39 results on '"Shpak, B."'
Search Results
2. Isolation of luminescence system from the luminescent fungus Neonothopanus nambi
- Author
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Bondar, V. S., Puzyr’, A. P., Purtov, K. V., Petunin, A. I., Burov, A. E., Rodicheva, E. K., Medvedeva, S. E., Shpak, B. A., Tyaglik, A. B., Shimomura, O., and Gitel’zon, I. I.
- Published
- 2014
- Full Text
- View/download PDF
3. Hygienic substantiation of calculating models for predicting toxicity of different classes insecticides (first part).
- Author
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Antonenko, A. M., primary, Vavrinevych, O. P., additional, Omelchuk, S. T., additional, and Shpak, B. I., additional
- Published
- 2019
- Full Text
- View/download PDF
4. HYGIENIC EVALUATION OF THE MOST COMMON METHODS OF AGRICULTURAL CROPS TREATMENT WITH CHEMICAL PROTECTION PRODUCTS (literature review).
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Borysenko, А. А., Antonenko, А. М., Shpak, B. I., Omelchuk, S. Т., and Bardov, V. G.
- Subjects
CROPS ,PLANT products ,PLANT protection ,PREVENTIVE medicine - Abstract
Global strategies, including application of chemical plant protection products, are important in the cultivation of safe corps and preservation of human health. A promising area of preventive medicine, agronomy, agroecology and agroengineering is the optimization of methods of pesticide formulations application. The aim of the work was a hygienic assessment of the most common and latest methods of crops treatment with chemical pesticides. Results. The biological effectiveness of different types of pesticides is achieved by different application rates of the working solution. The most common method of pesticide application is spraying, which ensures the application of pesticides in the drop-liquid state and is characterized by low consumption of active substance per unit area, variablecontrolled distribution on the treatment surface, provides good adhesion and retention on facilities, allows the use of combined formulations. One of the most effective ways to minimize the negative impact of chemical plant protection products and achieve economic success is a rational approach to the choice of pesticide application, as it takes into account the hazard class of pesticides, the presence of water protection zones, the sensitivity of target crops, etc. Conclusion. Rational application of pesticides includes minimizing the overall effect of pesticides on human health and the environment and achieving high-targeted biological efficiency. Adherence to the methodology of choosing the type of pesticide application and selection of the type of spray is a key point in optimizing the rational use of chemical plant protection products, which requires a detailed study from the standpoint of both efficiency and safety. Control over compliance with the recommendations should be included in sanitary-hygienic and sanitary-ecological monitoring. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
5. G-EYE colonoscopy is superior to standard colonoscopy for increasing adenoma detection rate: an international randomized controlled trial (with videos)
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Shirin, H., Shpak, B., Epshtein, J., Karstensen, J.G., Hoffman, A., Ridder, R. de, Testoni, P.A., Ishaq, S., Reddy, D.N., Gross, S.A., Neumann, H., Goetz, M., Abramowich, D., Moshkowitz, M., Mizrahi, M., Vilmann, P., Rey, J.W., Sanduleanu-Dascalescu, S., Viale, E., Chaudhari, H., Pochapin, M.B., Yair, M., Shnell, M., Yaari, S., Hendel, J.W., Teubner, D., Bogie, R.M.M., Notaristefano, C., Simantov, R., Gluck, N., Israeli, E., Stigaard, T., Matalon, S., Vilkin, A., Benson, A., Sloth, S., Maliar, A., Waizbard, A., Jacob, H., Thielsen, P., Shachar, E., Rochberger, S., Hershcovici, T., Plougmann, J.I., Braverman, M., Tsvang, E., Abedi, A.A., Brachman, Y., Siersema, P.D., Kiesslich, R., Shirin, H., Shpak, B., Epshtein, J., Karstensen, J.G., Hoffman, A., Ridder, R. de, Testoni, P.A., Ishaq, S., Reddy, D.N., Gross, S.A., Neumann, H., Goetz, M., Abramowich, D., Moshkowitz, M., Mizrahi, M., Vilmann, P., Rey, J.W., Sanduleanu-Dascalescu, S., Viale, E., Chaudhari, H., Pochapin, M.B., Yair, M., Shnell, M., Yaari, S., Hendel, J.W., Teubner, D., Bogie, R.M.M., Notaristefano, C., Simantov, R., Gluck, N., Israeli, E., Stigaard, T., Matalon, S., Vilkin, A., Benson, A., Sloth, S., Maliar, A., Waizbard, A., Jacob, H., Thielsen, P., Shachar, E., Rochberger, S., Hershcovici, T., Plougmann, J.I., Braverman, M., Tsvang, E., Abedi, A.A., Brachman, Y., Siersema, P.D., and Kiesslich, R.
- Abstract
Contains fulltext : 205162.pdf (publisher's version ) (Open Access), BACKGROUND AND AIMS: Colorectal cancer (CRC) is largely preventable with routine screening and surveillance colonoscopy; however, interval cancers arising from precancerous lesions missed by standard colonoscopy still occur. An increased adenoma detection rate (ADR) has been found to be inversely associated with interval cancers. The G-EYE device includes a reusable balloon integrated at the distal tip of a standard colonoscope, which flattens haustral folds, centralizes the colonoscope's optics, and reduces bowel slippage. The insufflated balloon also aims to enhance visualization of the colon during withdrawal, thereby increasing the ADR. METHODS: In this randomized, controlled, international, multicenter study (11 centers), patients (aged >/=50 years) referred to colonoscopy for screening, surveillance, or changes in bowel habits were randomized to undergo either balloon-assisted colonoscopy by using an insufflated balloon during withdrawal or standard high-definition colonoscopy. The primary endpoint was the ADR. RESULTS: One thousand patients were enrolled between May 2014 and September 2016 to undergo colonoscopy by experienced endoscopists; 803 were finally analyzed (standard colonoscopy n = 396; balloon-assisted colonoscopy n = 407). Baseline parameters were similar in both groups. Balloon-assisted colonoscopy provided a 48.0% ADR compared with 37.5% in the standard colonoscopy group (28% increase; P = .0027). Additionally, balloon-assisted colonoscopy provided for a significant increase in detection of advanced (P = .0033) flat adenomas (P < .0001) and sessile serrated adenomas/polyps (P = .0026). CONCLUSION: Balloon-assisted colonoscopy yielded a higher ADR and increased the detection of advanced, flat, and sessile serrated adenomas/polyps when compared with standard colonoscopy. Improved detection by the G-EYE device could impact the quality of CRC screening by reducing miss rates and consequently reducing interval cancer incidence. (Clinical trial regist
- Published
- 2019
6. Hygienic substantiation of calculating models for predicting toxicity of different classes insecticides (first part).
- Author
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Antonenko, A. M., Vavrinevych, O. P., Omelchuk, S. T., Shpak, B. I., Antonenko, A. M., Vavrinevych, O. P., Omelchuk, S. T., and Shpak, B. I.
- Abstract
This work is the first part of our study to develop alternative experimental mathematic models for predicting toxicity of insecticides. In the first stage, calculations will be carried out and the most reliable models will be proposed. In the second – a statistical analysis and comparative estimation of the toxicometric parameters obtained experimentally and calculated according to the proposed equations. The purpose of the research is the scientific substantiation of the calculation models for predicting toxicity of insecticides of different classes. Data on the physico-chemical properties and toxicometry parameters of fungicides are taken from the PPDB pesticides database. Insecticides of such chemical classes as derivatives of tetram and tetronic acids, benzoylureas, carbamates, neonicotinoids, pyrethroids, organophosphorus compounds, avermectins were selected for analysis. It has been established that there is a significant positive correlation between NO(A)EL in the chronic experiment of all insecticides, the median lethal doses at oral administration (LD50 per os) of pyrithoids and neonicotinoids, and the molecular weight (at p<0.05). There is a significant negative correlation between the toxicometry parameters of all insecticides and their individual groups (pyrithoids, neonicotinoids, organophosphorus compounds) and melting temperature and the octanol-water partition coefficient, log Po/w (at p<0.05). It is proved that the proposed calculation models for predicting insecticide hazards are adequate according to Fisher's criterion, and the coefficients of regression equations are reliable according to Student's criterion (p<0,05).
- Published
- 2019
7. HYGIENIC SUBSTANTIATION OF CALCULATING MODELS FOR PROGNOSIS OF TOXICITY OF DIFFERENT CLASSES INSECTICIDES (SECOND PART).
- Author
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Vavrinevych, O. P., Shpak, B. I., Antonenko, A. M., Omelchuk, S. T., and Zinchenko, T. I.
- Subjects
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INSECTICIDES , *ORGANOPHOSPHORUS pesticides , *ORGANOPHOSPHORUS compounds , *CRONBACH'S alpha , *NONLINEAR regression - Abstract
This work is the second part of our study to develop alternative experimental mathematic models for predecting toxicity of insecticides, where we carried out a statistical analysis and comparative estimation of the toxicometric parameters obtained experimentally and calculated according to the proposed equations. In the first stage calculations were carried out and the most reliable models were proposed. The purpose of the research is the scientific substantiation and statistical analysis of the calculation models for predicting the toxicity of insecticides of different classes. For research we took the insecticides of the following chemical classes: neonicotinoids, pyrethroids, organophosphorus compounds. Statistical analysis of the linear and nonlinear regression equations obtained for insecticides was conducted. The equations described the dependence of subthreshold doses in the chronic experiment of all insecticides, the median lethal doses at oral admission of pyrithoids and neonicotinoids from molecular weight; and toxicometry parameters of all insecticides and their individual groups (pyrithoids, neonicotinoids, organophosphorus compounds) on melting temperature and the octanol-water partition coefficient. On the basis of a comparison of the toxicometry parameters obtained experimentally (actual parameters) and calculated according to the proposed equations checking of possibility of using of the calculating models for predicting the danger of the investigated groups of insecticides was performed. For substantiated pairs of resultant and factorial variables for pyrethroids, neonicotinoids, and organophosphorus pesticides a reliable correlation was established (ractucal> rtable at p = 0.05) or trend (ractucal> rtable at p = 0.1). A good and very good consistency of the features selected for the calculations according to the Cronbach’s alpha (index ranged from 0.8 and above) was indicated. The developed algorithm makes it possible to significantly simplify the conduction of toxicological studies of the studied classes of insecticides. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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8. Fast gene set enrichment analysis
- Author
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Alexey Sergushichev, Sukhov, Shpak B, Korotkevich G, Budin N, and Maxim N. Artyomov
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Set (abstract data type) ,Computer science ,Gene ,Polynomial algorithm ,Algorithm ,Interpretation (model theory) - Abstract
Gene set enrichment analysis (GSEA) is an ubiquitously used tool for evaluating pathway enrichment in transcriptional data. Typical experimental design consists in comparing two conditions with several replicates using a differential gene expression test followed by preranked GSEA performed against a collection of hundreds and thousands of pathways. However, the reference implementation of this method cannot accurately estimate small P-values, which significantly limits its sensitivity due to multiple hypotheses correction procedure.Here we present FGSEA (Fast Gene Set Enrichment Analysis) method that is able to estimate arbitrarily low GSEA P-values with a high accuracy in a matter of minutes or even seconds. To confirm the accuracy of the method, we also developed an exact algorithm for GSEA P-values calculation for integer gene-level statistics. Using the exact algorithm as a reference we show that FGSEA is able to routinely estimate P-values up to 10−100 with a small and predictable estimation error. We systematically evaluate FGSEA on a collection of 605 datasets and show that FGSEA recovers much more statistically significant pathways compared to other implementations.FGSEA is open source and available as an R package in Bioconductor (http://bioconductor.org/packages/fgsea/) and on GitHub (https://github.com/ctlab/fgsea/).
- Published
- 2016
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9. Peculiarities of toxicodynamics and evaluation of hazard of the new avermectin class insecticides–abamectin and emamectin.
- Author
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Shpak, B. I., Antonenko, A. M., Korshun, M. M., Shpak, B. I., Antonenko, A. M., and Korshun, M. M.
- Abstract
Based on the expert-analytical study of literature and websites on the results of toxicological experiments of varying duration, a hygienic evaluation of the new class of insecticides – macrocyclic lactones: abamectin and emamectin was done. It was found that by the parameters of acute oral and inhalation toxicity abamectin isreferred to a highly dangerous pesticides (class 1), by acute percutaneous toxicity – to moderately dangerous (3), by irritating and allergenic action – to low dangerous (4). According to LD50 emamectin in single administration into the stomach and on the skin belongs to class 3, by acute inhalation toxicity and irritation of the mucous membranes – to class 2 (dangerous), by skin irritation – to 3-4 class, having allergenic potential – 4 class of danger. CF-1 mice are animals most sensitive to the effects of avermectins due to polymorphism of their mdr 1a gene, coding P-glycoprotein. The main target organ to avermectin action was recognized to be the central nervous system. ADI of abamectin for humans was established at the level of 0,0002 mg/kg (the lowest NOAEL by systemic toxicity for parent and offspring generation was set in the experiment studying reproductive toxicity on rats – 0,12 mg/kg, a safety factor – 600) and emamectin – 0,001 mg/kg (the lowest NOEL was established in 16-day experiment on CF-1 mice – 0,1 mg/kg and a safety factor – 100).
- Published
- 2014
10. Peculiarities of toxicodynamics and evaluation of hazard of the new avermectin class insecticides–abamectin and emamectin.
- Author
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Shpak, B. I., primary, Antonenko, A. M., additional, and Korshun, M. M., additional
- Published
- 2014
- Full Text
- View/download PDF
11. Enrichment medium for isolation of Campylobacter jejuni-Campylobacter coli
- Author
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Rogol, M, primary, Shpak, B, additional, Rothman, D, additional, and Sechter, I, additional
- Published
- 1985
- Full Text
- View/download PDF
12. G-EYE colonoscopy is superior to standard colonoscopy for increasing adenoma detection rate
- Author
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Jakob Hendel, Mati Shnell, Johannes W. Rey, Helmut Neumann, Shmuel Rochberger, Rogier de Ridder, Daniel Teubner, Seth A. Gross, Meir Mizrahi, Alexander Vilkin, Michael Yair, Yuri Brachman, Silvia Sanduleanu-Dascalescu, Armita Armina Abedi, Eran Israeli, Shaul Yaari, John Gásdal Karstensen, Chiara Notaristefano, Beni Shpak, Peter Thielsen, Arthur Hoffman, Harold Jacob, Menachem Moshkowitz, Amit Maliar, D. Nageshwar Reddy, Martin Goetz, Pier Alberto Testoni, Julie Isabelle Plougmann, Trine Stigaard, Dov Abramowich, Hrushikesh Chaudhari, Haim Shirin, Sauid Ishaq, Ariel A. Benson, Peter D. Siersema, Michal Braverman, Edi Viale, Stine Sloth, Tiberiu Hershcovici, Nathan Gluck, Shay Matalon, Roel M M Bogie, Ralf Kiesslich, Amir Waizbard, Eyal Shachar, Peter Vilmann, Mark Pochapin, Roman Simantov, Julia Epshtein, Eduard Tsvang, Interne Geneeskunde, MUMC+: MA Maag Darm Lever (9), Promovendi ODB, MUMC+: MA Med Staf Artsass Interne Geneeskunde (9), RS: GROW - R3 - Innovative Cancer Diagnostics & Therapy, Shirin, H., Shpak, B., Epshtein, J., Karstensen, J. G., Hoffman, A., de Ridder, R., Testoni, P. A., Ishaq, S., Reddy, D. N., Gross, S. A., Neumann, H., Goetz, M., Abramowich, D., Moshkowitz, M., Mizrahi, M., Vilmann, P., Rey, J. W., Sanduleanu-Dascalescu, S., Viale, E., Chaudhari, H., Pochapin, M. B., Yair, M., Shnell, M., Yaari, S., Hendel, J. W., Teubner, D., Bogie, R. M. M., Notaristefano, C., Simantov, R., Gluck, N., Israeli, E., Stigaard, T., Matalon, S., Vilkin, A., Benson, A., Sloth, S., Maliar, A., Waizbard, A., Jacob, H., Thielsen, P., Shachar, E., Rochberger, S., Hershcovici, T., Plougmann, J. I., Braverman, M., Tsvang, E., Abedi, A. A., Brachman, Y., Siersema, P. D., and Kiesslich, R.
- Subjects
Male ,Colorectal cancer ,MULTICENTER ,Colonoscopy ,Aftercare ,Colorectal Neoplasm ,Balloon ,law.invention ,Tumours of the digestive tract Radboud Institute for Health Sciences [Radboudumc 14] ,Adenomatous Polyps ,Feces ,Hemoglobins ,0302 clinical medicine ,Randomized controlled trial ,law ,Clinical endpoint ,Early Detection of Cancer ,ENDOCUFF-ASSISTED COLONOSCOPY ,medicine.diagnostic_test ,Colonoscopes ,Incidence (epidemiology) ,Immunochemistry ,Gastroenterology ,Adenomatous Polyp ,Middle Aged ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Female ,Radiology ,Colorectal Neoplasms ,Human ,Adenoma ,medicine.medical_specialty ,Colonic Polyps ,03 medical and health sciences ,COLORECTAL-CANCER INCIDENCE ,SURVEILLANCE ,medicine ,Humans ,INTERVAL ,Radiology, Nuclear Medicine and imaging ,BALLOON COLONOSCOPE ,Hemoglobin ,TANDEM COLONOSCOPY ,Colonoscope ,Aged ,LESIONS ,SOCIETY TASK-FORCE ,business.industry ,medicine.disease ,Clinical trial ,Colonic Polyp ,MISS RATE ,Fece ,business - Abstract
Contains fulltext : 205162.pdf (Publisher’s version ) (Open Access) BACKGROUND AND AIMS: Colorectal cancer (CRC) is largely preventable with routine screening and surveillance colonoscopy; however, interval cancers arising from precancerous lesions missed by standard colonoscopy still occur. An increased adenoma detection rate (ADR) has been found to be inversely associated with interval cancers. The G-EYE device includes a reusable balloon integrated at the distal tip of a standard colonoscope, which flattens haustral folds, centralizes the colonoscope's optics, and reduces bowel slippage. The insufflated balloon also aims to enhance visualization of the colon during withdrawal, thereby increasing the ADR. METHODS: In this randomized, controlled, international, multicenter study (11 centers), patients (aged >/=50 years) referred to colonoscopy for screening, surveillance, or changes in bowel habits were randomized to undergo either balloon-assisted colonoscopy by using an insufflated balloon during withdrawal or standard high-definition colonoscopy. The primary endpoint was the ADR. RESULTS: One thousand patients were enrolled between May 2014 and September 2016 to undergo colonoscopy by experienced endoscopists; 803 were finally analyzed (standard colonoscopy n = 396; balloon-assisted colonoscopy n = 407). Baseline parameters were similar in both groups. Balloon-assisted colonoscopy provided a 48.0% ADR compared with 37.5% in the standard colonoscopy group (28% increase; P = .0027). Additionally, balloon-assisted colonoscopy provided for a significant increase in detection of advanced (P = .0033) flat adenomas (P < .0001) and sessile serrated adenomas/polyps (P = .0026). CONCLUSION: Balloon-assisted colonoscopy yielded a higher ADR and increased the detection of advanced, flat, and sessile serrated adenomas/polyps when compared with standard colonoscopy. Improved detection by the G-EYE device could impact the quality of CRC screening by reducing miss rates and consequently reducing interval cancer incidence. (Clinical trial registration number: NCT01917513.).
- Published
- 2019
- Full Text
- View/download PDF
13. Comprehensive peripheral blood immunoprofiling reveals five immunotypes with immunotherapy response characteristics in patients with cancer.
- Author
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Dyikanov D, Zaitsev A, Vasileva T, Wang I, Sokolov AA, Bolshakov ES, Frank A, Turova P, Golubeva O, Gantseva A, Kamysheva A, Shpudeiko P, Krauz I, Abdou M, Chasse M, Conroy T, Merriam NR, Alesse JE, English N, Shpak B, Shchetsova A, Tikhonov E, Filatov I, Radko A, Bolshakova A, Kachalova A, Lugovykh N, Bulahov A, Kilina A, Asanbekov S, Zheleznyak I, Skoptsov P, Alekseeva E, Johnson JM, Curry JM, Linnenbach AJ, South AP, Yang E, Morozov K, Terenteva A, Nigmatullina L, Fastovetz D, Bobe A, Balabanian L, Nomie K, Yong ST, Davitt CJH, Ryabykh A, Kudryashova O, Tazearslan C, Bagaev A, Fowler N, Luginbuhl AJ, Ataullakhanov RI, and Goldberg MF
- Subjects
- Humans, Flow Cytometry methods, Transcriptome, Prognosis, Gene Expression Profiling methods, Female, Biomarkers, Tumor blood, Biomarkers, Tumor genetics, Biomarkers, Tumor immunology, Neoplasms immunology, Neoplasms therapy, Neoplasms blood, Immunotherapy methods
- Abstract
The lack of comprehensive diagnostics and consensus analytical models for evaluating the status of a patient's immune system has hindered a wider adoption of immunoprofiling for treatment monitoring and response prediction in cancer patients. To address this unmet need, we developed an immunoprofiling platform that uses multiparameter flow cytometry to characterize immune cell heterogeneity in the peripheral blood of healthy donors and patients with advanced cancers. Using unsupervised clustering, we identified five immunotypes with unique distributions of different cell types and gene expression profiles. An independent analysis of 17,800 open-source transcriptomes with the same approach corroborated these findings. Continuous immunotype-based signature scores were developed to correlate systemic immunity with patient responses to different cancer treatments, including immunotherapy, prognostically and predictively. Our approach and findings illustrate the potential utility of a simple blood test as a flexible tool for stratifying cancer patients into therapy response groups based on systemic immunoprofiling., Competing Interests: Declaration of interests This research was funded by BostonGene, Corp. N.F. is the Chief Medical Officer of BostonGene, Corp., and all authors affiliated with BostonGene, Corp. were employees thereof at the time the study was performed. M.F.G., A.Bagaev, D.D., A.Z., B.S., E.T., P.T., and A.A.S. are inventors on patents related to this work., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
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14. Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes.
- Author
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Zaitsev A, Chelushkin M, Dyikanov D, Cheremushkin I, Shpak B, Nomie K, Zyrin V, Nuzhdina E, Lozinsky Y, Zotova A, Degryse S, Kotlov N, Baisangurov A, Shatsky V, Afenteva D, Kuznetsov A, Paul SR, Davies DL, Reeves PM, Lanuti M, Goldberg MF, Tazearslan C, Chasse M, Wang I, Abdou M, Aslanian SM, Andrewes S, Hsieh JJ, Ramachandran A, Lyu Y, Galkin I, Svekolkin V, Cerchietti L, Poznansky MC, Ataullakhanov R, Fowler N, and Bagaev A
- Subjects
- Algorithms, CD8-Positive T-Lymphocytes, Humans, Machine Learning, RNA-Seq, Sequence Analysis, RNA, Tumor Microenvironment genetics, Neoplasms genetics, Transcriptome
- Abstract
Cellular deconvolution algorithms virtually reconstruct tissue composition by analyzing the gene expression of complex tissues. We present the decision tree machine learning algorithm, Kassandra, trained on a broad collection of >9,400 tissue and blood sorted cell RNA profiles incorporated into millions of artificial transcriptomes to accurately reconstruct the tumor microenvironment (TME). Bioinformatics correction for technical and biological variability, aberrant cancer cell expression inclusion, and accurate quantification and normalization of transcript expression increased Kassandra stability and robustness. Performance was validated on 4,000 H&E slides and 1,000 tissues by comparison with cytometric, immunohistochemical, or single-cell RNA-seq measurements. Kassandra accurately deconvolved TME elements, showing the role of these populations in tumor pathogenesis and other biological processes. Digital TME reconstruction revealed that the presence of PD-1-positive CD8
+ T cells strongly correlated with immunotherapy response and increased the predictive potential of established biomarkers, indicating that Kassandra could potentially be utilized in future clinical applications., Competing Interests: Declaration of interests N.F. is the Chief Medical Officer of BostonGene, Corp. and a professor at the University of Texas MD Anderson Cancer Center. A. Zaitsev, M. Chelushkin, V.Z., B.S., D.D., E. Nuzhdina, A. Bagaev, and R.A. are inventors on patent applications related to Kassandra. All other authors declare no competing interests., (Copyright © 2022 Elsevier Inc. All rights reserved.)- Published
- 2022
- Full Text
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15. Microbiome-mediated incapacitation of interferon lambda production in the oral mucosa.
- Author
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Rodriguez-Hernandez CJ, Sokoloski KJ, Stocke KS, Dukka H, Jin S, Metzler MA, Zaitsev K, Shpak B, Shen D, Miller DP, Artyomov MN, Lamont RJ, and Bagaitkar J
- Subjects
- Animals, Cell Line, Gingiva metabolism, Humans, Mice, Primary Cell Culture, Gingiva immunology, Host-Pathogen Interactions immunology, Interferons metabolism, Interleukins metabolism, Microbiota, Porphyromonas gingivalis physiology
- Abstract
Here, we show that Porphyromonas gingivalis ( Pg ), an endogenous oral pathogen, dampens all aspects of interferon (IFN) signaling in a manner that is strikingly similar to IFN suppression employed by multiple viral pathogens. Pg suppressed IFN production by down-regulating several IFN regulatory factors (IRFs 1, 3, 7, and 9), proteolytically degrading STAT1 and suppressing the nuclear translocation of the ISGF3 complex, resulting in profound and systemic repression of multiple interferon-stimulated genes. Pg -induced IFN paralysis was not limited to murine models but was also observed in the oral tissues of human periodontal disease patients, where overabundance of Pg correlated with suppressed IFN generation. Mechanistically, multiple virulence factors and secreted proteases produced by Pg transcriptionally suppressed IFN promoters and also cleaved IFN receptors, making cells refractory to exogenous IFN and inducing a state of broad IFN paralysis. Thus, our data show a bacterial pathogen with equivalence to viruses in the down-regulation of host IFN signaling., Competing Interests: The authors declare no competing interest.
- Published
- 2021
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16. A novel prepless X-ray imaging capsule for colon cancer screening.
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Gluck N, Shpak B, Brun R, Rösch T, Arber N, and Moshkowitz M
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- Aged, Animals, Capsule Endoscopy methods, Early Detection of Cancer methods, Healthy Volunteers, Humans, Imaging, Three-Dimensional instrumentation, Imaging, Three-Dimensional methods, Middle Aged, Pilot Projects, Radiography, Swine, Adenoma diagnostic imaging, Capsule Endoscopes, Capsule Endoscopy instrumentation, Colonic Neoplasms diagnostic imaging, Early Detection of Cancer instrumentation
- Published
- 2016
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17. Comparison of adenoma detection and miss rates between a novel balloon colonoscope and standard colonoscopy: a randomized tandem study.
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Halpern Z, Gross SA, Gralnek IM, Shpak B, Pochapin M, Hoffman A, Mizrahi M, Rochberger YS, Moshkowitz M, Santo E, Melhem A, Grinshpon R, Pfefer J, and Kiesslich R
- Published
- 2015
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18. Effects of purified endogenous inhibitor of the Na+/Ca2+ exchanger on ouabain-induced arrhythmias in the atria and ventricle strips of guinea pig.
- Author
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Shpak B, Gofman Y, Shpak C, Hiller R, Boyman L, and Khananshvili D
- Subjects
- Animals, Arrhythmias, Cardiac chemically induced, Dose-Response Relationship, Drug, Guinea Pigs, Heart Atria drug effects, Heart Ventricles drug effects, Lidocaine pharmacology, Myocardial Contraction drug effects, Strophanthidin, Thiourea analogs & derivatives, Thiourea pharmacology, Anti-Arrhythmia Agents pharmacology, Arrhythmias, Cardiac prevention & control, Cardiotonic Agents, Heart drug effects, Ouabain, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
Previous studies demonstrated that the purified endogenous inhibitor (NCX(IF)) of the cardiac Na(+)/Ca(2+) exchanger (NCX1) has the capacity to modulate cardiac muscle contractility. Here, we tested the effects of purified NCX(IF) on arrhythmias induced by ouabain in the atria and ventricle strips of guinea pig. For the sake of comparison NCX(IF) was compared to lidocaine and KB-R7943. In the ventricle strip, NCX(IF) ( approximately 10 U/ml) results in rapid, complete and stable inhibition of ouabain-induced arrhythmias (the inhibition of arrhythmia is not followed by revival of irregular contractions). Under similar experimental conditions the atria strips require somewhat higher doses of NCX(IF) (25-50 U/ml) for complete suppression of arrhythmia. In the atria strip, NCX(IF) (10-25 U/ml) increases the threshold dose (1 microM) of ouabain for arrhythmia onset 2.2+/-0.5-fold (n=5, p<0.05) as well as prolongs the lag-phase for arrhythmia appearance 4.0+/-0.5-fold (n=5, p<0.01). The lag period for arrhythmia onset was also lengthened (2.0+/-0.4-fold) by NCX(IF) in the ventricle strips (n=6, p<0.002). At low frequency of pacing (1 Hz), all three tested substances, lidocaine, KB-R7943, and NCX(IF) can effectively suppress the ouabain-induced arrhythmia. However, at higher frequency (2 Hz), lidocaine is ineffective in suppressing arrhythmia, whereas KB-R7943 becomes pro-arrhythmic. In contrast to reference drugs, NCX(IF) retains its anti-arrhythmic capacity at high frequencies, either in the atria (n=6, p<0.01) or ventricle (n=5, p<0.05) strips. In conclusion, NCX(IF) results in rapid, effective and stable suppression of arrhythmia both in the atria and ventricle preparations under conditions at which the reference drugs become ineffective.
- Published
- 2006
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19. Advanced procedures for separation and analysis of low molecular weight inhibitor (NCXIF) of the cardiac sodium-calcium exchanger.
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Boyman L, Hiller R, Shpak B, Yomtov E, Shpak C, and Khananshvili D
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- Animals, Cattle, Cells, Cultured, Molecular Weight, Biological Factors chemistry, Biological Factors isolation & purification, Chromatography, High Pressure Liquid methods, Heart Ventricles metabolism, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
A low molecular weight inhibitor (NCX(IF)) of the cardiac Na/Ca exchanger, isolated from the calf ventricle tissue, is capable of regulating the muscle strip's contractility and relaxation without involving the beta-activation pathway. The structural analysis of NCX(IF) requires highly purified preparations that fulfill the demanding requirements for mass spectra and NMR analyses. No such preparation is yet available. To this end, new HPLC procedures were developed by a combination of the reverse phase, normal phase, and HILIC (hydrophilic liquid chromatography) techniques. The specific activity of NCX(IF) is 10(5) times higher in the purified preparations (as compared to the crude extract) showing a 2-5% yield of total inhibitory activity and 20-100 microg content of final material. The purification yield reveals that 1 kg ventricle muscle contains 0.1-0.2 mg NCX(IF), meaning that the tissue concentrations of NCX(IF) may reach 10(-7)-10(-6) M. The diode-array scanning of purified preparations of NCX(IF) shows a homogeneous 3D peak with a maximal absorption at 202 nm. These spectral properties may represent a five-membered ring (e.g., proline, histidine) and/or simple chemical groups (like amine, carbonyl, ester, etc.), but not an aromatic ring or complex conjugates (alkyne, alkene, aldehyde, etc.). NCX(IF) does not respond to phenol/sulfur reagent, suggesting that it lacks reducing (aldo) sugar. NCX(IF) shows a faint response to fluorescamine, meaning that it may contain an amino group (or its derivative). It is believed that a combination of presently developed procedures with LC/MS and LC/MS/MS may provide a useful tool for structural analysis of NCX(IF).
- Published
- 2005
- Full Text
- View/download PDF
20. The low molecular weight inhibitor of NCX1 interacts with a cytosolic domain that differs from the ion-transport site of the Na/Ca exchanger.
- Author
-
Shpak C, Hiller R, Shpak B, Boyman L, and Khananshvili D
- Subjects
- Animals, Calcium metabolism, Cattle, Cytosol metabolism, Ion Transport, Protein Structure, Tertiary, Sarcolemma metabolism, Sodium-Calcium Exchanger chemistry, Biological Factors pharmacology, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
The endogenous inhibitory factor (NCX(IF)) of the cardiac Na/Ca exchanger (NCX1) is a low molecular weight substance, which has a strong capacity to modulate the ventricle muscle contractility. Previously, we have shown that NCX(IF) can completely inhibit either the forward (Na(i)-dependent Ca-uptake) or reverse (Na(o)-dependent Ca-release) mode of Na/Ca exchange as well as its partial reaction, the Ca/Ca exchange. Although the preliminary studies have shown that NCX(IF) can rapidly (within few milliseconds) interact with a putative inhibitory site of the Na/Ca exchanger protein (or within its vicinity), it was not clear whether the NCX(IF) can directly interact with the ion transport sites of the exchanger protein or the interaction site of NCX(IF) is distinct from the ion-binding/transport site of NCX1. In order to segregate between these possibilities the NCX(IF) was tested for its capacity to compete with Ca at the cytosolic side by using the preparation of sarcolemma vesicles having predominantly the inside-out orientation. For this goal, the initial rates of Na(i)-dependent (45)Ca-uptake were measured in the presence of extravesicular (cytosolic) NCX(IF) under conditions in which the concentration of extravesicular Ca was varied (2-200 microM) and intravesicular Na was kept fixed at saturating concentration (160 mM). Under these conditions the NCX(IF) results in several fold decrease in V(max) values, while having no significant effect on the K(m). Taking into account the molecular weight of 350-550 Da (derived from the gel-filtration and mass-spectra data), the experimentally measured inhibitory potency of NCX(IF) can be estimated as the IC(50) = 0.3-0.6 microM. Therefore, it is concluded that the NCX(IF) is reasonably potent blocker, which interacts with cytosolic domain thereby preventing the ion-translocation (and not ion-binding) events.
- Published
- 2004
- Full Text
- View/download PDF
21. Inotropic and lusitropic effects induced by the inhibitory factor of the Na/Ca exchanger are not mediated by the beta-adrenergic activation.
- Author
-
Shpak B, Shpak C, Hiller R, Boyman L, and Khananshvili D
- Subjects
- Adrenergic beta-1 Receptor Antagonists, Adrenergic beta-Agonists pharmacology, Adrenergic beta-Antagonists administration & dosage, Adrenergic beta-Antagonists pharmacology, Animals, Atrial Function drug effects, Dose-Response Relationship, Drug, Guinea Pigs, In Vitro Techniques, Isometric Contraction drug effects, Isoproterenol pharmacology, Myocardial Contraction drug effects, Rats, Receptors, Adrenergic, beta-1 physiology, Sarcolemma drug effects, Sarcolemma physiology, Sodium-Calcium Exchanger pharmacology, Sodium-Calcium Exchanger physiology, Species Specificity, Stimulation, Chemical, Ventricular Function, Adrenergic beta-1 Receptor Agonists, Myocardial Contraction physiology, Propranolol pharmacology, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
Recently, an endogenous inhibitory factor (NCXIF) of the cardiac Na/Ca exchanger (NCX1) has been isolated, purified, and preliminary characterized. Here, we demonstrate that low doses of NCXIF (10(-7)10(-8) M) induce strong inotropic effects in the guinea and rat ventricle strips, while having no detectable effects in the atria even at 10(-5) M. The inotropic effects of NCXIF are species-specific; the rat ventricle muscle is 20 to 50 times more sensitive to varying doses of NCXIF than the guinea pig. On the other hand the extent of maximal inotropic response is more prominent in the guinea pig model (up to 6-fold enhancement) than in the rat (up to 2-fold enhancement). The NCXIF accelerates the single-twitch relaxation (lusitropic effect) in dose-dependent manner, reaching approximately 2-fold shortening of twitch width at saturating doses. The dose-dependence curves of lusitropic and inotropic effects exhibit a reciprocal relationship, meaning that these two effects might share common mechanisms. To test a possible involvement of catecholamines, the effects of NCXIF were examined in the presence or absence of beta-adrenergic blocker, deralin. The saturating doses of deralin (1- 3 microM) do not alter either the NCXIF-induced acceleration of relaxation or twitch enhancement, meaning that the NCXIF effects cannot be mediated by occasional release of endogenous catecholamines. The capacity of NCXIF to modulate the ventricle contractility unconnectedly to the beta-adrenergic activation may provide new rational clues for future pharmacological interventions.
- Published
- 2004
- Full Text
- View/download PDF
22. The endogenous inhibitor of NCX1 does not resemble the properties of digitalis compound.
- Author
-
Shpak C, Hiller R, Shpak B, and Khananshvili D
- Subjects
- Animals, Cattle, Chromatography, High Pressure Liquid, In Vitro Techniques, Sodium-Potassium-Exchanging ATPase antagonists & inhibitors, Digitalis chemistry, Plant Extracts pharmacology, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
In our previous study, we ware successful in isolation and purification of an endogenous inhibitor of the Na/Ca exchanger (NCX1) from the calf ventricle extracts. The purified factor has characterized to have strong positive inotropic effect on isometric contractions of isolated ventricle strips of guinea pig. A possibility is that besides the NCX1 the endogenous factor may also interact with other ion-transport systems (e.g., Na,K-ATPase) involved in modulation of muscle contractility-relaxation. Therefore, a primary goal of the present study was to detect a possible effect of newly found NCX1 inhibitor on Na,K-ATPase and Ca-ATPase activities. The preparations of isolated sarcolemma vesicles were used for this goal. Although the crude extracts of calf ventricles can inhibit both the Na/Ca exchange and Na,K-ATPase, these two inhibitory activities can be separated on the Sephadex G-10 column, meaning that different molecular entities might be responsible for inhibition of Na/Ca exchange and Na,K-ATPase. Addition of 100 U of purified endogenous factor to the assay medium results in nearly complete inhibition of forward (Na(i)-dependent Ca-uptake) and reverse (Na(o)-dependent Ca-efflux) modes of Na/Ca exchange. On the other hand, no effect was detected on activities of Na,K-ATPase and Ca-ATPase even in the presence of 500 U of purified factor in the assay medium. In light of the present data, it is concluded that the endogenous inhibitor of NCX1 does not resemble the targeting properties of digitalis like compound. Obviously, more systematic studies are required in the future for resolving a possible interaction of the endogenous inhibitor of NCX1 with other ion-transport systems involved in calcium homeostasis and action potential.
- Published
- 2003
- Full Text
- View/download PDF
23. An unknown endogenous inhibitor of Na/Ca exchange can enhance the cardiac muscle contractility.
- Author
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Hiller R, Shpak C, Shavit G, Shpak B, and Khananshvili D
- Subjects
- Aniline Compounds, Animals, Biological Factors chemistry, Calcium metabolism, Cardiotonic Agents chemistry, Cattle, Cell Extracts chemistry, Chromatography, Chromatography, High Pressure Liquid, Fluorometry, Guinea Pigs, Heart Ventricles chemistry, In Vitro Techniques, Kinetics, Mass Spectrometry, Molecular Weight, Sodium-Calcium Exchanger metabolism, Xanthenes, Biological Factors isolation & purification, Biological Factors pharmacology, Cardiotonic Agents isolation & purification, Cardiotonic Agents pharmacology, Isometric Contraction drug effects, Sodium-Calcium Exchanger antagonists & inhibitors
- Abstract
The cardiac sarcolemma Na/Ca exchanger is a key system for controlling the intracellular calcium levels during the excitation-contraction coupling. Here, we test the hypothesis that the heart tissue contains a putative endogenous factor having a capacity to modulate the Na/Ca exchanger and muscle contractility. The concentrated cardiac extracts inhibit the Na(i)- or Ca(i)-dependent (45)Ca uptakes in isolated cardiac sarcolemma vesicles as well as the Na(o)-dependent Ca efflux, monitored by extravesicular Ca probe fluo-3. The inhibitory activity has been purified approximately 2000-fold by normal and reversed-phase HPLC procedures. The inhibitory activity is eluted from the Sephadex G-10 in the range of 350-550 Da, suggesting that the inhibitory factor is a low-molecular-weight substance. The mass spectra analysis shows a number of signals within m/z 380-560; however, it is not clear at this moment whether these recordings represent the mass of putative inhibitory factor or irrelevant impurities. The endogenous inhibitory factor of Na/Ca exchange does not resemble the properties (HPLC retention time, mass spectra, amino acid analysis, etc.) of autoinhibitory XIP peptide. The addition of inhibitory factor to muscle strip of guinea pig ventricles induces 2- to 5-fold enhancement of isometric contractions, thereby exhibiting a strong positive inotropic effect. This effect is a dose-dependent phenomenon, which can be reversed by washing the inhibitory factor from the organ bath. Assuming a molecular weight of 350-550 Da, the effective concentrations of putative inhibitor must be <10(-6) M. Therefore, the present findings demonstrate that the mammalian heart contains a low-molecular-weight factor that can inhibit Na/Ca exchange and enhance the cardiac contractility., (Copyright 2000 Academic Press.)
- Published
- 2000
- Full Text
- View/download PDF
24. [A thermostable toxin-producing E. coli and infantile diarrhea].
- Author
-
Wolk M, Gluskin I, Ohad E, and Shpak B
- Subjects
- Bacterial Toxins metabolism, Enterotoxins metabolism, Escherichia coli metabolism, Escherichia coli Proteins, Humans, Infant, Infant, Newborn, Infant, Premature, Diseases microbiology, Diarrhea, Infantile microbiology, Escherichia coli isolation & purification, Escherichia coli Infections microbiology
- Abstract
An E. coli strain producing only a thermostable toxin (ST) and belonging to serogroup 0153 (ETEC 0153; ST) was isolated from the stools of 9 infants with diarrhea, 4 of them premature, during the last half of August, 1988. All the 4 prematures passed frequent fluid stools. In 5 of the 9 infants, other pathogens were found in addition to the ETEC strain, including rotavirus, Plesiomonas and Shigella sonnei. Until recently, ETEC strains like that described were considered rare all over the world. During the past 2 years ETEC strains belonging to that serogroup and toxin type were reported as a major cause for infantile diarrhea in Spain in 5 outbreaks. Infantile diarrhea caused by an ETEC strain in Israel is reported here for the first time.
- Published
- 1990
25. [Effect of orcomin on clinico-pathochemical aspects of copper metabolism in acute pneumonia].
- Author
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Shpak BIu and Neĭko EM
- Subjects
- Acute Disease, Humans, Pneumonia drug therapy, Copper metabolism, Pneumonia metabolism, Trace Elements therapeutic use
- Published
- 1978
26. [Use of orcomin in combined treatment of acute pneumonia].
- Author
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Shpak BIu, Zapadniuk VI, and Neĭko EM
- Subjects
- Acute Disease, Cobalt therapeutic use, Copper therapeutic use, Drug Combinations, Female, Humans, Iron therapeutic use, Magnesium therapeutic use, Male, Manganese therapeutic use, Zinc therapeutic use, Pneumonia drug therapy, Trace Elements therapeutic use
- Published
- 1976
27. [Balance of serveral trace elements and activity of metal enzymes in patients with acute pneumonia].
- Author
-
Shpak BIu
- Subjects
- Acute Disease, Humans, Pneumonia blood, Pneumonia enzymology, Carbonic Anhydrases blood, Pneumonia metabolism, Trace Elements blood
- Published
- 1979
28. [Urolesan in the treatment of stenocardia patients].
- Author
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Neĭko EM, Duma ZV, Del'va IuV, Shpak BIu, and Debenko MV
- Subjects
- Angina Pectoris physiopathology, Chronic Disease, Coronary Disease drug therapy, Coronary Disease physiopathology, Dipyridamole therapeutic use, Drug Evaluation, Drug Therapy, Combination, Humans, Physical Exertion, Angina Pectoris drug therapy, Plant Extracts therapeutic use
- Abstract
Urolesan was used in the treatment of patients with chronic ischemic heart disease. It was established that urolesan favours improvement of the state of the vascular component of microcirculation, aggregation of erythrocytes, increase of the peripheral circulation, normalization of the blood coagulation system, optimization of external respiration, normalization of the activity of serum aminotransferases. These changes were particularly pronounced in exertion stenocardia.
- Published
- 1989
29. [Effect of orkomin on the dynamics of the external respiration function in acute pneumonia].
- Author
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Shpak BIu, Neĭko EM, Vandzhura IP, Debenko MV, and Shpil'chak MM
- Subjects
- Acute Disease, Drug Combinations, Humans, Minerals, Pneumonia physiopathology, Pneumonia drug therapy, Respiration drug effects, Trace Elements therapeutic use
- Published
- 1981
30. [Premorbid conditions in workers in the manufacture of polyethylene polyamine].
- Author
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Shpak BIu
- Subjects
- Bronchial Diseases diagnosis, Female, Humans, Lung Diseases diagnosis, Male, Occupational Diseases diagnosis, Risk Factors, Ukraine, Bronchial Diseases chemically induced, Chemical Industry, Lung Diseases chemically induced, Occupational Diseases chemically induced, Polyamines adverse effects, Polyethylenes adverse effects
- Published
- 1988
31. [Zinc metabolism and carbonic activity anhydrase in patients with acute pneumonia].
- Author
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Shpak BIu and Neĭko EM
- Subjects
- Acute Disease, Adult, Female, Humans, Male, Middle Aged, Carbonic Anhydrases metabolism, Pneumonia metabolism, Zinc metabolism
- Published
- 1977
32. [Effect of fenicaberan and xavin on peripheral hemodynamic and blood coagulability indices in patients with chronic ischemic heart disease].
- Author
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Shpak BIu, Neĭko EM, Debenklo MV, Lazho AS, and Duma ZV
- Subjects
- Chronic Disease, Coronary Disease blood, Coronary Disease physiopathology, Drug Evaluation, Drug Therapy, Combination, Female, Hemodynamics drug effects, Humans, Male, Benzofurans therapeutic use, Blood Coagulation drug effects, Coronary Disease drug therapy, Theophylline analogs & derivatives, Xanthinol Niacinate therapeutic use
- Published
- 1988
33. [Lymphoblastic lymphoma at extragonadal sites].
- Author
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Shpak BIu and Neĭko EM
- Subjects
- Adolescent, Diagnostic Errors, Humans, Male, Lymphoma, Non-Hodgkin diagnosis
- Published
- 1986
34. [A case of visceral thromboangiitis associated with congenital mitral valve defect].
- Author
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Shpak BIu, Neĭko EM, Vandzhura IP, Del'va IuV, and Glushko LB
- Subjects
- Coronary Disease diagnosis, Humans, Male, Middle Aged, Thromboangiitis Obliterans diagnosis, Coronary Disease complications, Mitral Valve abnormalities, Pulmonary Artery, Thromboangiitis Obliterans complications
- Published
- 1985
35. [A case of asymmetrical obstructive cardiomyopathy associated with other congenital anomalies].
- Author
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Shpak BIu, Glushko LV, and Visitskaia NI
- Subjects
- Adult, Female, Humans, Abnormalities, Multiple complications, Bronchi abnormalities, Cardiomyopathy, Hypertrophic complications, Heart Defects, Congenital complications
- Published
- 1987
36. [Role of trace elements in diagnosis of acute pneumonia].
- Author
-
Shpak BIu and Neĭko EM
- Subjects
- Acute Disease, Humans, Pneumonia blood, Pneumonia diagnosis, Trace Elements blood
- Published
- 1978
37. [Effect of urolesan on the hemodynamics of patients with chronic ischemic heart disease].
- Author
-
Del'va IuV, Neĭko EM, and Shpak BIu
- Subjects
- Adult, Aged, Hemodynamics, Humans, Middle Aged, Coronary Disease drug therapy, Plant Extracts therapeutic use
- Published
- 1986
38. [Clinico-pathochemical parallels in acute pneumonia].
- Author
-
Shpak BIu, Neĭko EM, and Vakaliuk PM
- Subjects
- Acute Disease, Adult, Aged, Alpha-Globulins metabolism, Ceruloplasmin metabolism, Copper metabolism, Female, Humans, Male, Middle Aged, Pneumonia metabolism
- Published
- 1977
39. [Dynamics of metalloproteins and blood protein fractions in the course of treatment of patients with acute pneumonias].
- Author
-
Shpak BIu
- Subjects
- Acute Disease, Adolescent, Adult, Carbohydrate Metabolism, Ceruloplasmin metabolism, Female, Humans, Male, Middle Aged, Pneumonia therapy, Transferrin metabolism, Blood Proteins metabolism, Iron blood, Metalloproteins blood, Pneumonia blood
- Published
- 1976
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