10 results on '"Shucheng Shen"'
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2. Clinical Performance of Nanopore Targeted Sequencing for Diagnosing Infectious Diseases
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Yu Fu, Qingsong Chen, Mengyuan Xiong, Jin Zhao, Shucheng Shen, Liangjun Chen, Yunbao Pan, Zhiqiang Li, and Yirong Li
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clinical performance ,infectious diseases ,nanopore targeted sequencing ,polymerase chain reaction ,sanger sequencing ,sensitivity ,Microbiology ,QR1-502 - Abstract
ABSTRACT The gold standard for confirming bacterial infections is culture-positive, which has a long sample-to-result turnaround time and poor sensitivity for unculturable and fastidious pathogens; therefore, it is hard to guide early, targeted antimicrobial therapy and reduce overuse of broad-spectrum antibiotics. Nanopore targeted sequencing (NTS) is reported to be advantageous in detection speed and range over culture in prior published reports. However, investigation of the clinical performance of NTS is deficient at present. Thus, we assessed the feasibility of NTS for the first time with cohort and systematic comparisons with traditional culture assays and PCR followed by Sanger sequencing. This retrospective study was performed on 472 samples, including 6 specimen types from 436 patients, to evaluate the clinical performance of NTS designed for identifying the microbial composition of various infections. Of these samples, 86.7% were found to be NTS positive, which was significantly higher than culture-positive (26.7%). A total of 425 significant human opportunistic bacteria and fungi detected by NTS were selected to go through validation with PCR followed by Sanger sequencing. The average accuracy rate was 85.2% (maximum 100% created by Cryptococcus neoformans, the last one 66.7% provided by both Staphylococcus haemolyticus and Moraxella osloensis, minimum 0% produced by Burkholderia cepacia). The accuracy rate also varied with sample type; the highest accuracy rate was found in pleural and ascites fluid (95.8%) followed by bronchoalveolar lavage fluid (88.7%), urine (86.8%), and wound secretions (85.0%), while the lowest was present in cerebrospinal fluid (58.8%). NTS had a diagnostic sensitivity of 94.5% and specificity of 31.8%. The positive and negative predictive values of NTS were 79.9% and 66.7%, respectively. For diagnosis of infectious diseases, the sensitivity was greatly increased by 56.7% in NTS compared with culture (94.5% vs 37.8%). Therefore, NTS can accurately detect the causative pathogens in infectious samples, particularly in pleural and ascites fluid, bronchoalveolar lavage fluid, urine, and wound secretions, with a short turnaround time of 8–14 h, and might innovatively contribute to personalizing antibiotic treatments for individuals with standardized protocols in clinical practices. IMPORTANCE Nanopore targeted sequencing (NTS) is reported to be advantageous in detection speed and range over culture in prior published reports. Investigation of the clinical performance of NTS is deficient at present. In our study, cohort and systematic comparisons among three assays (culture, NTS, and Sanger sequencing) were analyzed retrospectively for the first time. We found that NTS undoubtedly has incomparable advantages in accurately detecting the causative pathogens in infectious samples, particularly in pleural and ascites fluid, bronchoalveolar lavage fluid, urine, and wound secretions, with a short turnaround time of 8–14 h. For sterile specimens like blood and cerebrospinal fluid (CSF), the NTS outcomes should be validated using other nucleic acid based detection technology. Overall, NTS might innovatively contribute to guiding early, targeted antimicrobial therapy with lower cost and reduce overuse of broad-spectrum antibiotics.
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- 2022
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3. ST7 Becomes One of the Most Common Staphylococcus aureus Clones After the COVID-19 Epidemic in the City of Wuhan, China
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Jihong Gu, Shucheng Shen, Mengyuan Xiong, Jin Zhao, Hongpan Tian, Xiao Xiao, and Yirong Li
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Pharmacology ,Infectious Diseases ,Infection and Drug Resistance ,Pharmacology (medical) - Abstract
Jihong Gu,1,* Shucheng Shen,1,* Mengyuan Xiong,1,2 Jin Zhao,1,2 Hongpan Tian,1 Xiao Xiao,1,3 Yirong Li1â 3 1Department of Laboratory Medicine, Zhongnan Hospital of Wuhan University, Wuhan, Peopleâs Republic of China; 2Wuhan Research Center for Infectious Diseases and Tumors of the Chinese Academy of Medical Sciences, Wuhan, Peopleâs Republic of China; 3Hubei Engineering Center for Infectious Disease Prevention, Control and Treatment, Wuhan, Peopleâs Republic of China*These authors contributed equally to this workCorrespondence: Yirong Li, Department of Laboratory Medicine, Zhongnan Hospital of Wuhan University, Wuhan, 430061, Peopleâs Republic of China, Tel +8618602718052, Email liyirong838@163.comBackground: Staphylococcus aureus (S. aureus) was able to rapidly evolve and adapt under the pressure of antibiotics, host immune and environmental change. After Corona Virus Disease 2019 (COVID-19) epidemic in Wuhan, China, a large number of disinfectants were used, which might result in rapid evolution of S. aureus.Methods: A total of 619 S. aureus isolates were collected from Zhongnan Hospital, Wuhan University from 2018 to 2021, including group BEFORE (309 strains collected before COVID-19 pandemic) and group AFTER (310 strains collected after COVID-19 pandemic), for comparing the changes of molecular epidemiology. The molecular characteristics of isolates were analyzed by Multi-locus sequence typing (MLST), spa, chromosomal cassette mec (SCCmec) typing, virulence genes were screened by the PCR, antibiotic susceptibility test was carried out by the VITEK system.Results: Thirty-six sequence types (STs) belonging to 14 clone complexes (CCs) were identified. ST5 was the most prevalent clone in both groups, and ST7, ranking the sixth in group BEFORE, became the second dominant clone in group AFTER (6.5% vs 10.0%), whereas ST239 decreased from the seventh to the fourteenth (5.8% vs 1.9%). ST7 in group AFTER had a higher positive rate of virulence genes, including hlb, fnbB, seb, lukDE, sdrE and the proportion of ST7-t091 MRSA strains increased from 19.1% to 50% compared with group BEFORE. Though no significant difference of MRSA proportion was found between two groups, SCCmec type-III in group AFTER decreased (p< 0.01). Though the rate of multidrug-resistance (MDR) decreased, the virulence genes hlb, hlg, fnbB, seb and pvl carrying rates were significantly elevated in MRSA strains of group AFTER.Conclusion: After COVID-19 pandemic, ST7 becomes one of the predominant S. aureus clones in Wuhan and the carrying rate of SCCmec and virulence genes is on the rise. Therefore, it is essential to strengthen the surveillance of ST7 S. aureus clone.Keywords: Staphylococcus aureus, molecular characterization, antimicrobial resistance, virulence gene, disinfectant
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- 2023
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4. Positive Strain Rate Sensitivity and Deformation Behavior of a Fe–29Mn–3Al–3Si TWIP Steel
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Shucheng Shen, Cuilan Wu, Pan Xie, and Yuanrui Liu
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Metals and Alloys ,Industrial and Manufacturing Engineering - Published
- 2022
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5. Unusual relationship between impact toughness and grain size in a high-manganese steel
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Pan Xie, Jianghua Chen, Jiehua Li, Cuilan Wu, and Shucheng Shen
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Toughness ,Structural material ,Materials science ,Polymers and Plastics ,Mechanical Engineering ,Metals and Alloys ,02 engineering and technology ,Plasticity ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Microstructure ,01 natural sciences ,Grain size ,0104 chemical sciences ,Mechanics of Materials ,Martensite ,Materials Chemistry ,Ceramics and Composites ,Deformation (engineering) ,Composite material ,0210 nano-technology ,Crystal twinning - Abstract
The high-manganese steels are important structural materials, owing to their excellent toughness at low temperatures. However, the microstructural causes for their unusual properties have not adequately been understood thus far. Here, we report a reversal relationship between impact toughness and grain size in a high-manganese steel and its unrevealed microscopic mechanisms, which result in an excellent low-temperature toughness of the steel. Our investigations show that with increasing grain size the impact toughness of the steel can be improved drastically, especially at low-temperatures. Advanced electron microscopy characterization reveals that the enhanced impact toughness of the coarse-grained steel is attributed to the twinning induced plasticity and transformation induced plasticity effects, which produce large quantities of deformation twins, ehcp-martensite and α′bcc-martensite. Inversely, in the fine-grained steels, the formation of deformation twins and martensite is significantly inhibited, leading to the decrease of impact toughness. Microstructural characterizations also indicate that ehcp-martensite becomes more stable than α′bcc-martensite with decreasing temperature, resulting in characteristic microstructures in the coarse-grained samples after impact deformation at liquid nitrogen temperature. In the coarse-grained samples under impact deformation at -80 °C, ehcp-martensite transformation, α′bcc-martensite transformation and deformation twinning all occur simultaneously, which greatly improves the toughness of the steel.
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- 2021
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6. Temperature dependence of mechanical properties and deformation mechanism of Fe–25Mn–3Al–3Si alloy at high strain rate
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Shucheng Shen, Pan Xie, and Cuilan Wu
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Published
- 2023
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7. Abnormal orientation relation between fcc and hcp structures revealed in a deformed high manganese steel
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Jianghua Chen, Cuilan Wu, Pan Xie, and Shucheng Shen
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Materials science ,Polymers and Plastics ,Condensed matter physics ,Plane (geometry) ,Mechanical Engineering ,Metals and Alloys ,chemistry.chemical_element ,02 engineering and technology ,Manganese ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Orientation (vector space) ,Condensed Matter::Materials Science ,Transformation (function) ,chemistry ,Intersection ,Mechanics of Materials ,Transmission electron microscopy ,Phase (matter) ,Materials Chemistry ,Ceramics and Composites ,Invariant (mathematics) ,0210 nano-technology - Abstract
The crystallography of phase transformation is an important issue for studying metallic alloys. Here, we demonstrate an abnormal orientation relation between face-centered cubic (fcc) and hexagonal close-packed (hcp) phases due to the intersection of two ehcp-martensite variants in a high manganese steel. The corresponding crystallographic characteristics, including invariant line, habit plane and atomic steps, have been characterized by transmission electron microscopy and the quasi-O-line model. In addition, the models of phase transformation about the intersection are proposed based on transmission mechanisms of dislocations. Our findings enrich the theories of phase transformation and implicate the possibility to fabricate stronger and tougher steel.
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- 2021
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8. Deformation behaviors of a Fe-20Mn-3Al-3Si TRIP steel under quasi-static compression and dynamic impact
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Chunyu Liu, Shucheng Shen, Pan Xie, and Cuilan Wu
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Published
- 2022
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9. Tungsten particles reinforced high-entropy alloy matrix composite prepared by in-situ reaction
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Luo Tao, Jixiang Zheng, Wei Xue, Xiaotian Tang, Gang Chen, Shucheng Shen, and Tao Tao
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Materials science ,Mechanical Engineering ,Composite number ,Metals and Alloys ,chemistry.chemical_element ,02 engineering and technology ,Tungsten ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Microstructure ,01 natural sciences ,Grain size ,0104 chemical sciences ,Compressive strength ,chemistry ,Mechanics of Materials ,Phase (matter) ,Volume fraction ,Materials Chemistry ,Particle ,Composite material ,0210 nano-technology - Abstract
In this paper, a new preparation method of metal matrix composites is presented. The W/FeNiMnAlW high-entropy alloy (HEA) matrix composite materials have been prepared by a simple and efficient technology. The HEA matrix consists of a face-centered cubic (FCC) phase, an ordered body-centered cubic (BCC) phase and W2C phase. The volume fraction and average grain size of the reinforcing phase W particles, uniformly distributed in the microstructure of HEA matrix, are 30.9% and 13.57 µm, respectively. Good metallurgical bonding between W particle and matrix is achieved, and the formation mechanism of near spherical tungsten particles is discussed, and the density of the composites is 10.55 g/cm3. The hardness of W-phase, B2 phase and FCC phase was 681.48 HV, 533.82 HV and 286.70 HV, respectively. The yield strength (σ0.2) of the W/FeNiMnAlW composites is 1241 MPa, the maximum compressive strength (σmax) and the maximum plastic strain (ep) are over 2530 MPa and 15% respectively, which showed superior mechanical properties. The effective combination of FCC phase and ordered BCC phase and the uniform distribution of W particles without edges are the main reasons for its good mechanical properties. The volume wear loss and wear rate of the W/FeNiMnAlW composites are respectively 0.42 mm3 and 4.95 × 10−3 mm3/N m, and the worn mechanism is mainly adhesive wear and abrasive wear.
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- 2021
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10. Microstructure and mechanical property of WC-10Co/RM80 steel dissimilar resistance spot welding joint
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Wei Xue, Shucheng Shen, Yuzhen Jia, Gang Chen, and Guoyue Liu
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Materials science ,020502 materials ,Mechanical Engineering ,02 engineering and technology ,Welding ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Microstructure ,law.invention ,0205 materials engineering ,Mechanics of Materials ,law ,Cemented carbide ,Fracture (geology) ,Shear strength ,General Materials Science ,Direct shear test ,Composite material ,0210 nano-technology ,Spot welding ,Joint (geology) - Abstract
In this work, resistance spot welding (RSW) was used to weld dissimilar metals of cemented carbide (WC–10Co) and high strength steel (RM80). The mechanical property and microstructure of welded joints were analyzed by shear test, scanning electron microscopy and micro X-ray diffraction, establishing the corresponding relationship between the mechanical property of welded joints and microstructure. The results show that with the increase of welding current, the shear strength of welded joints first increased and then decreased, the maximum of which under the optimal welding process was 924 MPa. The characteristics of five interface bonding types were clarified, whose proportion under different welding currents was calculated, and the contribution of each interface bonding type to the performance of welded joints was studied based on the mechanical property and fracture mechanism.
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- 2020
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