104 results on '"Shyuan T. Ngo"'
Search Results
2. A transient protein folding response targets aggregation in the early phase of TDP-43-mediated neurodegeneration
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Rebecca San Gil, Dana Pascovici, Juliana Venturato, Heledd Brown-Wright, Prachi Mehta, Lidia Madrid San Martin, Jemma Wu, Wei Luan, Yi Kit Chui, Adekunle T. Bademosi, Shilpa Swaminathan, Serey Naidoo, Britt A. Berning, Amanda L. Wright, Sean S. Keating, Maurice A. Curtis, Richard L. M. Faull, John D. Lee, Shyuan T. Ngo, Albert Lee, Marco Morsch, Roger S. Chung, Emma Scotter, Leszek Lisowski, Mehdi Mirzaei, and Adam K. Walker
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Science - Abstract
Abstract Understanding the mechanisms that drive TDP-43 pathology is integral to combating amyotrophic lateral sclerosis (ALS), frontotemporal lobar degeneration (FTLD) and other neurodegenerative diseases. Here we generated a longitudinal quantitative proteomic map of the cortex from the cytoplasmic TDP-43 rNLS8 mouse model of ALS and FTLD, and developed a complementary open-access webtool, TDP-map ( https://shiny.rcc.uq.edu.au/TDP-map/ ). We identified distinct protein subsets enriched for diverse biological pathways with temporal alterations in protein abundance, including increases in protein folding factors prior to disease onset. This included increased levels of DnaJ homolog subfamily B member 5, DNAJB5, which also co-localized with TDP-43 pathology in diseased human motor cortex. DNAJB5 over-expression decreased TDP-43 aggregation in cell and cortical neuron cultures, and knockout of Dnajb5 exacerbated motor impairments caused by AAV-mediated cytoplasmic TDP-43 expression in mice. Together, these findings reveal molecular mechanisms at distinct stages of ALS and FTLD progression and suggest that protein folding factors could be protective in neurodegenerative diseases.
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- 2024
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3. Generation of a human induced pluripotent stem cell line (UQi001-A-1) edited with the CRISPR-Cas9 system to carry the heterozygous TARDBP c.1144G > A (p.A382T) missense mutation
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Timothy J. Tracey, Leanne Jiang, Melinder K. Gill, Samara N. Ranie, Dmitry A. Ovchinnikov, Ernst J. Wolvetang, and Shyuan T. Ngo
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Biology (General) ,QH301-705.5 - Abstract
Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease in which the TDP-43 protein is believed to play a central role in disease pathophysiology. Using the CRISPR-Cas9 system, we introduced the heterozygous c.1144G > A (p.A382T) missense mutation in exon 6 of the TARDBP gene into an iPSC line derived from a healthy individual. These edited iPSCs displayed normal cellular morphology, expressed major pluripotency markers, were capable of tri-lineage differentiation, and possessed a normal karyotype.
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- 2023
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4. Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease
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Qiao Ding, Kaamini Kesavan, Kah Meng Lee, Elyse Wimberger, Thomas Robertson, Melinder Gill, Dominique Power, Jeryn Chang, Atefeh T. Fard, Jessica C. Mar, Robert D. Henderson, Susan Heggie, Pamela A. McCombe, Rosalind L. Jeffree, Michael J. Colditz, Massimo A. Hilliard, Dominic C. H. Ng, Frederik J. Steyn, William D. Phillips, Ernst J. Wolvetang, Shyuan T. Ngo, and Peter G. Noakes
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Amyotrophic Lateral Sclerosis ,ALS ,Neuromuscular junction ,MuSK ,Agrin ,Motor neurons ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract A central event in the pathogenesis of motor neuron disease (MND) is the loss of neuromuscular junctions (NMJs), yet the mechanisms that lead to this event in MND remain to be fully elucidated. Maintenance of the NMJ relies upon neural agrin (n-agrin) which, when released from the nerve terminal, activates the postsynaptic Muscle Specific Kinase (MuSK) signaling complex to stabilize clusters of acetylcholine receptors. Here, we report that muscle from MND patients has an increased proportion of slow fibers and muscle fibers with smaller diameter. Muscle cells cultured from MND biopsies failed to form large clusters of acetylcholine receptors in response to either non-MND human motor axons or n-agrin. Furthermore, levels of expression of MuSK, and MuSK-complex components: LRP4, Caveolin-3, and Dok7 differed between muscle cells cultured from MND patients compared to those from non-MND controls. To our knowledge, this is the first time a fault in the n-agrin-LRP4-MuSK signaling pathway has been identified in muscle from MND patients. Our results highlight the n-agrin-LRP4-MuSK signaling pathway as a potential therapeutic target to prolong muscle function in MND.
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- 2022
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5. Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1
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Restuadi Restuadi, Frederik J. Steyn, Edor Kabashi, Shyuan T. Ngo, Fei-Fei Cheng, Marta F. Nabais, Mike J. Thompson, Ting Qi, Yang Wu, Anjali K. Henders, Leanne Wallace, Chris R. Bye, Bradley J. Turner, Laura Ziser, Susan Mathers, Pamela A. McCombe, Merrilee Needham, David Schultz, Matthew C. Kiernan, Wouter van Rheenen, Leonard H. van den Berg, Jan H. Veldink, Roel Ophoff, Alexander Gusev, Noah Zaitlen, Allan F. McRae, Robert D. Henderson, Naomi R. Wray, Jean Giacomotto, and Fleur C. Garton
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Motor neurone disease ,MND ,Genome-wide association study ,Computational biology ,Zebrafish ,Neurodegenerative diseases ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Amyotrophic lateral sclerosis (ALS) is a complex, late-onset, neurodegenerative disease with a genetic contribution to disease liability. Genome-wide association studies (GWAS) have identified ten risk loci to date, including the TNIP1/GPX3 locus on chromosome five. Given association analysis data alone cannot determine the most plausible risk gene for this locus, we undertook a comprehensive suite of in silico, in vivo and in vitro studies to address this. Methods The Functional Mapping and Annotation (FUMA) pipeline and five tools (conditional and joint analysis (GCTA-COJO), Stratified Linkage Disequilibrium Score Regression (S-LDSC), Polygenic Priority Scoring (PoPS), Summary-based Mendelian Randomisation (SMR-HEIDI) and transcriptome-wide association study (TWAS) analyses) were used to perform bioinformatic integration of GWAS data (N cases = 20,806, N controls = 59,804) with ‘omics reference datasets including the blood (eQTLgen consortium N = 31,684) and brain (N = 2581). This was followed up by specific expression studies in ALS case-control cohorts (microarray N total = 942, protein N total = 300) and gene knockdown (KD) studies of human neuronal iPSC cells and zebrafish-morpholinos (MO). Results SMR analyses implicated both TNIP1 and GPX3 (p < 1.15 × 10−6), but there was no simple SNP/expression relationship. Integrating multiple datasets using PoPS supported GPX3 but not TNIP1. In vivo expression analyses from blood in ALS cases identified that lower GPX3 expression correlated with a more progressed disease (ALS functional rating score, p = 5.5 × 10−3, adjusted R 2 = 0.042, B effect = 27.4 ± 13.3 ng/ml/ALSFRS unit) with microarray and protein data suggesting lower expression with risk allele (recessive model p = 0.06, p = 0.02 respectively). Validation in vivo indicated gpx3 KD caused significant motor deficits in zebrafish-MO (mean difference vs. control ± 95% CI, vs. control, swim distance = 112 ± 28 mm, time = 1.29 ± 0.59 s, speed = 32.0 ± 2.53 mm/s, respectively, p for all
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- 2022
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6. Meta-analysis of genome-wide DNA methylation identifies shared associations across neurodegenerative disorders
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Marta F. Nabais, Simon M. Laws, Tian Lin, Costanza L. Vallerga, Nicola J. Armstrong, Ian P. Blair, John B. Kwok, Karen A. Mather, George D. Mellick, Perminder S. Sachdev, Leanne Wallace, Anjali K. Henders, Ramona A. J. Zwamborn, Paul J. Hop, Katie Lunnon, Ehsan Pishva, Janou A. Y. Roubroeks, Hilkka Soininen, Magda Tsolaki, Patrizia Mecocci, Simon Lovestone, Iwona Kłoszewska, Bruno Vellas, the Australian Imaging Biomarkers and Lifestyle study, the Alzheimer’s Disease Neuroimaging Initiative, Sarah Furlong, Fleur C. Garton, Robert D. Henderson, Susan Mathers, Pamela A. McCombe, Merrilee Needham, Shyuan T. Ngo, Garth Nicholson, Roger Pamphlett, Dominic B. Rowe, Frederik J. Steyn, Kelly L. Williams, Tim J. Anderson, Steven R. Bentley, John Dalrymple-Alford, Javed Fowder, Jacob Gratten, Glenda Halliday, Ian B. Hickie, Martin Kennedy, Simon J. G. Lewis, Grant W. Montgomery, John Pearson, Toni L. Pitcher, Peter Silburn, Futao Zhang, Peter M. Visscher, Jian Yang, Anna J. Stevenson, Robert F. Hillary, Riccardo E. Marioni, Sarah E. Harris, Ian J. Deary, Ashley R. Jones, Aleksey Shatunov, Alfredo Iacoangeli, Wouter van Rheenen, Leonard H. van den Berg, Pamela J. Shaw, Cristopher E. Shaw, Karen E. Morrison, Ammar Al-Chalabi, Jan H. Veldink, Eilis Hannon, Jonathan Mill, Naomi R. Wray, and Allan F. McRae
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Neurodegenerative disorders ,DNA methylation ,Mixed-linear models ,Methylation profile score ,Out-of-sample classification ,Inflammatory markers ,Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract Background People with neurodegenerative disorders show diverse clinical syndromes, genetic heterogeneity, and distinct brain pathological changes, but studies report overlap between these features. DNA methylation (DNAm) provides a way to explore this overlap and heterogeneity as it is determined by the combined effects of genetic variation and the environment. In this study, we aim to identify shared blood DNAm differences between controls and people with Alzheimer’s disease, amyotrophic lateral sclerosis, and Parkinson’s disease. Results We use a mixed-linear model method (MOMENT) that accounts for the effect of (un)known confounders, to test for the association of each DNAm site with each disorder. While only three probes are found to be genome-wide significant in each MOMENT association analysis of amyotrophic lateral sclerosis and Parkinson’s disease (and none with Alzheimer’s disease), a fixed-effects meta-analysis of the three disorders results in 12 genome-wide significant differentially methylated positions. Predicted immune cell-type proportions are disrupted across all neurodegenerative disorders. Protein inflammatory markers are correlated with profile sum-scores derived from disease-associated immune cell-type proportions in a healthy aging cohort. In contrast, they are not correlated with MOMENT DNAm-derived profile sum-scores, calculated using effect sizes of the 12 differentially methylated positions as weights. Conclusions We identify shared differentially methylated positions in whole blood between neurodegenerative disorders that point to shared pathogenic mechanisms. These shared differentially methylated positions may reflect causes or consequences of disease, but they are unlikely to reflect cell-type proportion differences.
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- 2021
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7. CNS glucose metabolism in Amyotrophic Lateral Sclerosis: a therapeutic target?
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Tesfaye Wolde Tefera, Frederik J. Steyn, Shyuan T. Ngo, and Karin Borges
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Amyotrophic lateral sclerosis ,Brain energy metabolism ,Glucose metabolism ,Glycolysis ,Pentose phosphate pathway ,TCA cycle ,Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 ,Biochemistry ,QD415-436 - Abstract
Abstract Amyotrophic lateral sclerosis (ALS) is a fatal progressive neurodegenerative disorder primarily characterized by selective degeneration of both the upper motor neurons in the brain and lower motor neurons in the brain stem and the spinal cord. The exact mechanism for the selective death of neurons is unknown. A growing body of evidence demonstrates abnormalities in energy metabolism at the cellular and whole-body level in animal models and in people living with ALS. Many patients with ALS exhibit metabolic changes such as hypermetabolism and body weight loss. Despite these whole-body metabolic changes being observed in patients with ALS, the origin of metabolic dysregulation remains to be fully elucidated. A number of pre-clinical studies indicate that underlying bioenergetic impairments at the cellular level may contribute to metabolic dysfunctions in ALS. In particular, defects in CNS glucose transport and metabolism appear to lead to reduced mitochondrial energy generation and increased oxidative stress, which seem to contribute to disease progression in ALS. Here, we review the current knowledge and understanding regarding dysfunctions in CNS glucose metabolism in ALS focusing on metabolic impairments in glucose transport, glycolysis, pentose phosphate pathway, TCA cycle and oxidative phosphorylation. We also summarize disturbances found in glycogen metabolism and neuroglial metabolic interactions. Finally, we discuss options for future investigations into how metabolic impairments can be modified to slow disease progression in ALS. These investigations are imperative for understanding the underlying causes of metabolic dysfunction and subsequent neurodegeneration, and to also reveal new therapeutic strategies in ALS.
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- 2021
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8. Altered TDP-43 Structure and Function: Key Insights into Aberrant RNA, Mitochondrial, and Cellular and Systemic Metabolism in Amyotrophic Lateral Sclerosis
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Leanne Jiang and Shyuan T. Ngo
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amyotrophic lateral sclerosis ,ALS ,TDP-43 ,RNA ,autoregulation ,splicing ,Microbiology ,QR1-502 - Abstract
Amyotrophic lateral sclerosis (ALS) is a progressive and fatal neuromuscular disorder with no cure available and limited treatment options. ALS is a highly heterogeneous disease, whereby patients present with vastly different phenotypes. Despite this heterogeneity, over 97% of patients will exhibit pathological TAR-DNA binding protein-43 (TDP-43) cytoplasmic inclusions. TDP-43 is a ubiquitously expressed RNA binding protein with the capacity to bind over 6000 RNA and DNA targets—particularly those involved in RNA, mitochondrial, and lipid metabolism. Here, we review the unique structure and function of TDP-43 and its role in affecting the aforementioned metabolic processes in ALS. Considering evidence published specifically in TDP-43-relevant in vitro, in vivo, and ex vivo models we posit that TDP-43 acts in a positive feedback loop with mRNA transcription/translation, stress granules, cytoplasmic aggregates, and mitochondrial proteins causing a relentless cycle of disease-like pathology eventuating in neuronal toxicity. Given its undeniable presence in ALS pathology, TDP-43 presents as a promising target for mechanistic disease modelling and future therapeutic investigations.
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- 2022
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9. Skeletal-Muscle Metabolic Reprogramming in ALS-SOD1G93A Mice Predates Disease Onset and Is A Promising Therapeutic Target
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Silvia Scaricamazza, Illari Salvatori, Giacomo Giacovazzo, Jean Philippe Loeffler, Frederique Renè, Marco Rosina, Cyril Quessada, Daisy Proietti, Constantin Heil, Simona Rossi, Stefania Battistini, Fabio Giannini, Nila Volpi, Frederik J. Steyn, Shyuan T. Ngo, Elisabetta Ferraro, Luca Madaro, Roberto Coccurello, Cristiana Valle, and Alberto Ferri
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Drugs ,Molecular Neuroscience ,Cellular Neuroscience ,Science - Abstract
Summary: Patients with ALS show, in addition to the loss of motor neurons in the spinal cord, brainstem, and cerebral cortex, an abnormal depletion of energy stores alongside hypermetabolism. In this study, we show that bioenergetic defects and muscle remodeling occur in skeletal muscle of the SOD1G93A mouse model of ALS mice prior to disease onset and before the activation of muscle denervation markers, respectively. These changes in muscle physiology were followed by an increase in energy expenditure unrelated to physical activity. Finally, chronic treatment of SOD1G93A mice with Ranolazine, an FDA-approved inhibitor of fatty acid β-oxidation, led to a decrease in energy expenditure in symptomatic SOD1G93A mice, and this occurred in parallel with a robust, albeit temporary, recovery of the pathological phenotype.
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- 2020
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10. Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis
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Beben Benyamin, Ji He, Qiongyi Zhao, Jacob Gratten, Fleur Garton, Paul J. Leo, Zhijun Liu, Marie Mangelsdorf, Ammar Al-Chalabi, Lisa Anderson, Timothy J. Butler, Lu Chen, Xiang-Ding Chen, Katie Cremin, Hong-Weng Deng, Matthew Devine, Janette Edson, Jennifer A. Fifita, Sarah Furlong, Ying-Ying Han, Jessica Harris, Anjali K. Henders, Rosalind L. Jeffree, Zi-Bing Jin, Zhongshan Li, Ting Li, Mengmeng Li, Yong Lin, Xiaolu Liu, Mhairi Marshall, Emily P. McCann, Bryan J. Mowry, Shyuan T. Ngo, Roger Pamphlett, Shu Ran, David C. Reutens, Dominic B. Rowe, Perminder Sachdev, Sonia Shah, Sharon Song, Li-Jun Tan, Lu Tang, Leonard H. van den Berg, Wouter van Rheenen, Jan H. Veldink, Robyn H. Wallace, Lawrie Wheeler, Kelly L. Williams, Jinyu Wu, Xin Wu, Jian Yang, Weihua Yue, Zong-Hong Zhang, Dai Zhang, Peter G. Noakes, Ian P. Blair, Robert D. Henderson, Pamela A. McCombe, Peter M. Visscher, Huji Xu, Perry F. Bartlett, Matthew A. Brown, Naomi R. Wray, and Dongsheng Fan
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Science - Abstract
Amyotrophic lateral sclerosis (ALS) is a rapidly progressing neurodegenerative disease. Here, Wray and colleagues identify association of the GPX3-TNIP1 locus with ALS using cross-ethnic meta-analyses.
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- 2017
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11. Biomarkers of Metabolism in Amyotrophic Lateral Sclerosis
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Siobhan E. Kirk, Timothy J. Tracey, Frederik J. Steyn, and Shyuan T. Ngo
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amyotrophic lateral sclerosis ,ALS ,metabolism ,biomarker ,motor neurone disease ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disorder characterized by the deterioration of motor neurons. However, this complex disease extends beyond the boundaries of the central nervous system, with metabolic alterations being observed at the systemic and cellular level. While the number of studies that assess the role and impact of metabolic perturbations in ALS is rapidly increasing, the use of metabolism biomarkers in ALS remains largely underinvestigated. In this review, we discuss current and potential metabolism biomarkers in the context of ALS. Of those for which data does exist, there is limited insight provided by individual markers, with specificity for disease, and lack of reproducibility and efficacy in informing prognosis being the largest drawbacks. However, given the array of metabolic markers available, the potential exists for a panel of metabolism biomarkers, which may complement other current biomarkers (including neurophysiology, imaging, as well as CSF, blood and urine markers) to overturn these limitations and give rise to new diagnostic and prognostic indicators.
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- 2019
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12. Skeletal Muscle Metabolism: Origin or Prognostic Factor for Amyotrophic Lateral Sclerosis (ALS) Development?
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Cyril Quessada, Alexandra Bouscary, Frédérique René, Cristiana Valle, Alberto Ferri, Shyuan T. Ngo, and Jean-Philippe Loeffler
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skeletal muscle ,ALS ,neuromuscular junction ,hypermetabolism ,PDK4 ,metabolic imbalance ,Cytology ,QH573-671 - Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by progressive and selective loss of motor neurons, amyotrophy and skeletal muscle paralysis usually leading to death due to respiratory failure. While generally considered an intrinsic motor neuron disease, data obtained in recent years, including our own, suggest that motor neuron protection is not sufficient to counter the disease. The dismantling of the neuromuscular junction is closely linked to chronic energy deficit found throughout the body. Metabolic (hypermetabolism and dyslipidemia) and mitochondrial alterations described in patients and murine models of ALS are associated with the development and progression of disease pathology and they appear long before motor neurons die. It is clear that these metabolic changes participate in the pathology of the disease. In this review, we summarize these changes seen throughout the course of the disease, and the subsequent impact of glucose–fatty acid oxidation imbalance on disease progression. We also highlight studies that show that correcting this loss of metabolic flexibility should now be considered a major goal for the treatment of ALS.
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- 2021
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13. Neuronal Lipid Metabolism: Multiple Pathways Driving Functional Outcomes in Health and Disease
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Timothy J. Tracey, Frederik J. Steyn, Ernst J. Wolvetang, and Shyuan T. Ngo
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lipid metabolism ,neuronal metabolism ,amyotrophic lateral sclerosis ,mitochondria ,glycosphingolipid ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Lipids are a fundamental class of organic molecules implicated in a wide range of biological processes related to their structural diversity, and based on this can be broadly classified into five categories; fatty acids, triacylglycerols (TAGs), phospholipids, sterol lipids and sphingolipids. Different lipid classes play major roles in neuronal cell populations; they can be used as energy substrates, act as building blocks for cellular structural machinery, serve as bioactive molecules, or a combination of each. In amyotrophic lateral sclerosis (ALS), dysfunctions in lipid metabolism and function have been identified as potential drivers of pathogenesis. In particular, aberrant lipid metabolism is proposed to underlie denervation of neuromuscular junctions, mitochondrial dysfunction, excitotoxicity, impaired neuronal transport, cytoskeletal defects, inflammation and reduced neurotransmitter release. Here we review current knowledge of the roles of lipid metabolism and function in the CNS and discuss how modulating these pathways may offer novel therapeutic options for treating ALS.
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- 2018
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14. Use of hip- versus wrist-based actigraphy for assessing functional decline and disease progression in patients with motor neuron disease
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Cory J. Holdom, Jordi W. J. van Unnik, Ruben P. A. van Eijk, Leonard H. van den Berg, Robert D. Henderson, Shyuan T. Ngo, and Frederik J. Steyn
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Neurology ,Neurology (clinical) - Abstract
Background Actigraphy has been proposed as a measure for tracking functional decline and disease progression in patients with Motor Neuron Disease (MND). There is, however, little evidence to show that wrist-based actigraphy measures correlate with functional decline, and no consensus on how best to implement actigraphy. We report on the use of wrist actigraphy to show decreased activity in patients compared to controls, and compared the utility of wrist- and hip-based actigraphy for assessing functional decline in patients with MND. Methods In this multi-cohort, multi-centre, natural history study, wrist- and hip-based actigraphy were assessed in 139 patients with MND (wrist, n = 97; hip, n = 42) and 56 non-neurological control participants (wrist, n = 56). For patients with MND, longitudinal measures were contrasted with clinical outcomes commonly used to define functional decline. Results Patients with MND have reduced wrist-based actigraphy scores when compared to controls (median differences: prop. active = − 0.053 [− 0.075, − 0.026], variation axis 1 = − 0.073 [− 0.112, − 0.021]). When comparing wrist- and hip-based measures, hip-based accelerometery had stronger correlations with disease progression (prop. active: τ = 0.20 vs 0.12; variation axis 1: τ = 0.33 vs 0.23), whereas baseline wrist-based accelerometery was better related with future decline in fine-motor function (τ = 0.14–0.23 vs 0.06–0.16). Conclusions Actigraphy outcomes measured from the wrist are more variable than from the hip and present differing sensitivity to specific functional outcomes. Outcomes and analysis should be carefully constructed to maximise benefit, should wrist-worn devices be used for at-home monitoring of disease progression in patients with MND.
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- 2023
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15. Muscle and Its Neuromuscular Synapse – Players in the Pathogenesis of Motor Neuron Disease
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Peter G. Noakes, William D. Phillips, Rosalind L. Jeffree, Frederik J. Steyn, Ernst J. Wolvetang, Rob D. Henderson, Pamela A. McCombe, and Shyuan T. Ngo
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Research and Theory ,Leadership and Management ,Review and Exam Preparation ,Fundamentals and skills ,Pharmacology (nursing) ,General Medicine ,LPN and LVN ,General Nursing ,Education - Published
- 2023
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16. RNA-seq analysis of skeletal muscle in motor neurone disease cases and controls
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Anna Freydenzon, Shivangi Wani, Vanda Bharti, Leanne M. Wallace, Anjali K. Henders, Pamela A. McCombe, Robert D. Henderson, Frederik J. Steyn, Naomi R. Wray, Shyuan T. Ngo, and Allan F. McRae
- Abstract
BackgroundAmyotrophic lateral sclerosis (ALS), the most predominant form of Motor Neuron Disease (MND), is a progressive and fatal neurodegenerative condition that spreads throughout the neuromotor system by afflicting upper and lower motor neurons. Lower motor neurons project from the central nervous system and innervate muscle fibres at motor endplates, which degrade over the course of the disease leading to muscle weakness. The direction of neurodegeration from or to the point of neuromuscular junctions and the role of muscle itself in pathogenesis has continued to be a topic of debate in ALS research.MethodsTo assess the variation in gene expression between affected and nonaffected muscle tissue that might lead to this local degeneration of motor units, we generated RNA-seq skeletal muscle transcriptomes from 28 MND cases and 18 healthy controls and conducted differential expression analyses on gene-level counts, as well as an isoform switching analysis on isoform-level counts.ResultsWe identified 52 differentially-expressed genes (Benjamini-Hochberg-adjustedp< 0.05) within this comparison, including 38 protein coding, 9 long non-coding RNA, and 5 pseudogenes. Of protein-coding genes, 31 were upregulated in cases including with notable genes including the collagenicCOL25A1(p= 3.1 × 10−10),SAA1which is released in response to tissue injury (p= 3.6 × 10−5) as well as others of the SAA family, and the actin-encodingACTC1(p= 2.3 × 10−5). Additionally, we identified 17 genes which exhibited a functional isoform switch with likely functional consequences between cases and controls.ConclusionsOur analyses provide evidence of increased tissue generation in MND cases, which likely serve to compensate for the degeneration of motor units and skeletal muscle.
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- 2023
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17. Low plasma hyaluronan is associated with faster functional decline in patients with amyotrophic lateral sclerosis
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Cory J Holdom, Shyuan T. Ngo, Pamela A. McCombe, Frederik J. Steyn, and Robert D. Henderson
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Oncology ,medicine.medical_specialty ,Predictive marker ,integumentary system ,business.industry ,Amyotrophic Lateral Sclerosis ,Prognosis ,medicine.disease ,Pathophysiology ,carbohydrates (lipids) ,Glycosaminoglycan ,Extracellular matrix ,Neurology ,Internal medicine ,Disease Progression ,medicine ,Humans ,Biomarker (medicine) ,In patient ,Longitudinal Studies ,Neurology (clinical) ,Hyaluronic Acid ,Functional decline ,Amyotrophic lateral sclerosis ,business - Abstract
Objective: Hyaluronan, a glycosaminoglycan that forms a major constituent of the extracellular matrix, has been shown to be increased in the serum of patients with amyotrophic lateral sclerosis (ALS) with longer disease duration. We sought to determine whether measures of venous hyaluronan may serve as a predictive marker for disease progression in patients with ALS. Methods: Sixty-two patients with ALS, and 59 healthy control participants provided a plasma sample for the assessment of hyaluronan. Hyaluronan was compared against functional measures of disability, disease progression, and survival. Results: Hyaluronan was lower in patients with ALS when compared to healthy controls. Plasma hyaluronan was positively correlated with the change in the revised ALS functional rating scale, ΔFRS. Hyaluronan was also found to improve the prognostic power of the ΔFRS. Conclusion: Hyaluronan may serve as a predictive marker for functional decline in patients with ALS. Longitudinal studies are needed to fully explore the prognostic value of hyaluronan as a biomarker for disease progression, and to improve our understanding of components of the extracellular matrix specific to the pathophysiology of ALS.
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- 2021
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18. Lower hypothalamic volume with lower body mass index is associated with shorter survival in patients with amyotrophic lateral sclerosis
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Jeryn, Chang, Thomas B, Shaw, Cory J, Holdom, Pamela A, McCombe, Robert D, Henderson, Jurgen, Fripp, Markus, Barth, Christine C, Guo, Shyuan T, Ngo, and Frederik J, Steyn
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Neurology ,Amyotrophic Lateral Sclerosis ,Weight Loss ,Disease Progression ,Humans ,Neurology (clinical) ,Body Mass Index ,Proportional Hazards Models - Abstract
Weight loss in patients with amyotrophic lateral sclerosis (ALS) is associated with faster disease progression and shorter survival. Decreased hypothalamic volume is proposed to contribute to weight loss due to loss of appetite and/or hypermetabolism. We aimed to investigate the relationship between hypothalamic volume and body mass index (BMI) in ALS and Alzheimer's disease (AD), and the associations of hypothalamic volume with weight loss, appetite, metabolism and survival in patients with ALS.We compared hypothalamic volumes from magnetic resonance imaging scans with BMI for patients with ALS (n = 42), patients with AD (n = 167) and non-neurodegenerative disease controls (n = 527). Hypothalamic volumes from patients with ALS were correlated with measures of appetite and metabolism, and change in anthropomorphic measures and disease outcomes.Lower hypothalamic volume was associated with lower and higher BMI in ALS (quadratic association; probability of direction = 0.96). This was not observed in AD patients or controls. Hypothalamic volume was not associated with loss of appetite (p = 0.58) or hypermetabolism (p = 0.49). Patients with lower BMI and lower hypothalamic volume tended to lose weight (p = 0.08) and fat mass (p = 0.06) over the course of their disease, and presented with an increased risk of earlier death (hazard ratio [HR] 3.16, p = 0.03). Lower hypothalamic volume alone trended for greater risk of earlier death (HR 2.61, p = 0.07).These observations suggest that lower hypothalamic volume in ALS contributes to positive and negative energy balance, and is not universally associated with loss of appetite or hypermetabolism. Critically, lower hypothalamic volume with lower BMI was associated with weight loss and earlier death.
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- 2022
19. Profound lipid dysregulation in mutant TDP-43 mice is ameliorated by the glucocerebrosidase 2 inhibitor ambroxol
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Sophia Luikinga, Alexandre Henriques, Shyuan T. Ngo, Thusi Rapasinghe, Jean-Philippe Loeffler, Michael Spedding, and Bradley J. Turner
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The importance of dyslipidemia in amyotrophic lateral sclerosis (ALS) patients is increasingly recognised as a potential key mechanism driving disease onset, progression and survival. Evidence in familial ALS models suggests that lipid composition is significantly affected, however clinically relevant models have yet to be investigated. Using a powerful lipidomic approach, we uncover significant dysregulation of glycosphingolipid (GSL) metabolism in both the spinal cord and skeletal muscles of transgenic TDP-43Q331K mice. Treatment with the selective glucocerebrosidase 2 (GBA2) inhibitor ambroxol at symptom onset significantly improved motor and gait functions in TDP-43Q331K mice. Ambroxol treatment preserved motor neurons and neuromuscular junctions which was associated with modulation of GSL metabolism. Our study establishes significant lipid dysregulation in a clinically relevant model of ALS. Importantly, we show positive therapeutic outcomes in a mouse model of TDP-43 proteinopathy, suggesting that ambroxol may be a promising candidate to treat underlying dyslipidemia and symptoms of ALS.
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- 2022
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20. Patient perspectives on digital healthcare technology in care and clinical trials for motor neuron disease : an international survey
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Jochem Helleman, Barbara Johnson, Cory Holdom, Esther Hobson, Deirdre Murray, Frederik J. Steyn, Shyuan T. Ngo, Anjali Henders, Madhura B. Lokeshappa, Johanna M. A. Visser-Meily, Leonard H. van den Berg, Orla Hardiman, Anita Beelen, Chris McDermott, and Ruben P. A. van Eijk
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Technology ,Neurology ,Surveys and Questionnaires ,Amyotrophic Lateral Sclerosis ,Humans ,Neurology (clinical) ,Motor Neuron Disease ,Delivery of Health Care ,Monitoring, Physiologic - Abstract
Introduction To capture the patient’s attitude toward remote monitoring of motor neuron disease (MND) in care and clinical trials, and their concerns and preferences regarding the use of digital technology. Methods We performed an international multi-centre survey study in three MND clinics in The Netherlands, the United Kingdom, and Australia. The survey was co-developed by investigators and patients with MND, and sent to patients by e-mail or postal-mail. The main topics included: patients’ attitude towards remote care, participating in decentralized clinical trials, and preferences for and concerns with digital technology use. Results In total, 332 patients with MND participated. A majority of patients indicated they would be happy to self-monitor their health from home (69%), be remotely monitored by a multidisciplinary care team (75%), and would be willing to participate in clinical trials from home (65%). Patients considered respiratory function and muscle strength most valuable for home-monitoring. The majority of patients considered the use of at least three devices/apps (75%) once a week (61%) to be acceptable for home-monitoring. Fifteen percent of patients indicated they would not wish to perform home-measurements; reporting concerns about the burden and distress of home-monitoring, privacy and data security. Conclusion Most patients with MND exhibited a positive attitude toward the use of digital technology in both care and clinical trial settings. A subgroup of patients reported concerns with home-monitoring, which should be addressed in order to improve widespread adoption of remote digital technology in clinical MND care.
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- 2022
21. Polygenic risk score analysis for amyotrophic lateral sclerosis leveraging cognitive performance, educational attainment and schizophrenia
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Anjali K. Henders, Pamela A. McCombe, Nigel G. Laing, Perminder S. Sachdev, Allan F. McRae, Garth A. Nicholson, Fleur C. Garton, Beben Benyamin, Wouter van Rheenen, Anna A. E. Vinkhuyzen, Frederik J. Steyn, Restuadi Restuadi, Leanne Wallace, Dominic B. Rowe, Susan Mathers, Robert D. Henderson, Zhihong Zhu, Shyuan T. Ngo, Kelly L. Williams, Tian Lin, Karen A. Mather, Ian P. Blair, Merrilee Needham, Naomi R. Wray, Roger Pamphlett, Peter M. Visscher, Restuadi, Restuadi, Garton, Fleur C, Benyamin, Beben, Lin, Tian, and McRae, Allan F
- Subjects
Oncology ,medicine.medical_specialty ,Genome-wide association study ,Disease ,Logistic regression ,Polymorphism, Single Nucleotide ,Genetic correlation ,Article ,03 medical and health sciences ,Cognition ,Risk Factors ,Internal medicine ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Effects of sleep deprivation on cognitive performance ,Amyotrophic lateral sclerosis ,Genetics (clinical) ,0303 health sciences ,business.industry ,Amyotrophic Lateral Sclerosis ,030305 genetics & heredity ,Australia ,Neurodegenerative Diseases ,medicine.disease ,Schizophrenia ,Cohort ,business ,Genome-Wide Association Study - Abstract
Amyotrophic Lateral Sclerosis (ALS) is recognised to be a complex neurodegenerative disease involving both genetic and non-genetic risk factors. The underlying causes and risk factors for the majority of cases remain unknown; however, ever-larger genetic data studies and methodologies promise an enhanced understanding. Recent analyses using published summary statistics from the largest ALS genome-wide association study (GWAS) (20,806 ALS cases and 59,804 healthy controls) identified that schizophrenia (SCZ), cognitive performance (CP) and educational attainment (EA) related traits were genetically correlated with ALS. To provide additional evidence for these correlations, we built single and multi-trait genetic predictors using GWAS summary statistics for ALS and these traits, (SCZ, CP, EA) in an independent Australian cohort (846 ALS cases and 665 healthy controls). We compared methods for generating the risk predictors and found that the combination of traits improved the prediction (Nagelkerke-R-2) of the case-control logistic regression. The combination of ALS, SCZ, CP, and EA, using the SBayesR predictor method gave the highest prediction (Nagelkerke-R-2) of 0.027 (P value = 4.6 x 10(-8)), with the odds-ratio for estimated disease risk between the highest and lowest deciles of individuals being 3.15 (95% CI 1.96-5.05). These results support the genetic correlation between ALS, SCZ, CP and EA providing a better understanding of the complexity of ALS. Refereed/Peer-reviewed
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- 2021
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22. Progression and survival of patients with motor neuron disease relative to their fecal microbiota
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Robert D. Henderson, Allan F McCrae, Frederik J. Steyn, Restuadi Restuadi, Shyuan T. Ngo, Ruben P A van Eijk, Pamela A. McCombe, Naomi R. Wray, and Fleur C. Garton
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biology ,Firmicutes ,Microbiota ,Amyotrophic Lateral Sclerosis ,Bacteroidetes ,Physiology ,Disease ,Gut flora ,biology.organism_classification ,medicine.disease ,Feces ,03 medical and health sciences ,0302 clinical medicine ,Neurology ,Metagenomics ,RNA, Ribosomal, 16S ,medicine ,Humans ,Neurology (clinical) ,Microbiome ,Motor Neuron Disease ,Amyotrophic lateral sclerosis ,030217 neurology & neurosurgery - Abstract
Gut microbiota studies have been well-investigated for neurodegenerative diseases such as Alzheimer's and Parkinson's disease, however, fewer studies have comprehensively examined the gut microbiome in Motor Neuron Disease (MND), with none examining its impact on disease prognosis. Here, we investigate MND prognosis and the fecal microbiota, using 16S rRNA case-control data from 100 individuals with extensive medical histories and metabolic measurements. We contrast the composition and diversity of fecal microbiome signatures from 49 MND and 51 healthy controls by combining current gold-standard 16S microbiome pipelines. Using stringent quality control thresholds, we conducted qualitative assessment approaches including; direct comparison of taxa, PICRUSt2 predicted metagenomics, Shannon and Chao1-index and Firmicutes/Bacteroidetes ratio. We show that the fecal microbiome of patients with MND is not significantly different from that of healthy controls that were matched by age, sex, and BMI, however there are distinct differences in Beta-diversity in some patients with MND. Weight, BMI, and metabolic and clinical features of disease in patients with MND were not related to the composition of their fecal microbiome, however, we observe a greater risk for earlier death in patients with MND with increased richness and diversity of the microbiome, and in those with greater Firmicutes to Bacteroidetes ratio. This was independent of anthropometric, metabolic, or clinical features of disease, and warrants support for further gut microbiota studies in MND. Given the disease heterogeneity in MND, and complexity of the gut microbiota, large studies are necessary to determine the detailed role of the gut microbiota and MND prognosis.
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- 2020
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23. Repurposing of Trimetazidine for Amyotrophic Lateral Sclerosis: a study in SOD1 G93A mice
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Michela Gloriani, Luisa Pieroni, Cristiana Valle, Cyril Quessada, Silvia Scaricamazza, Elisabetta Ferraro, Giacomo Giacovazzo, Gabriella Dobrowolny, Hao Wang, Valentina Nesci, Antonio Musarò, Niccolò Candelise, Cinzia Volonté, Illari Salvatori, Shyuan T. Ngo, Jean-Philippe Loeffler, Alberto Ferri, Frédérique René, Tesfaye Wolde Tefera, Susanna Amadio, Aniello Primiano, Andrea Urbani, Elisa Lepore, Alessio Torcinaro, Frederik J. Steyn, and Roberto Coccurello
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Pharmacology ,Hypermetabolism ,SOD1G93A mice ,Trimetazidine ,amyotrophic lateral sclerosis ,hypermetabolism ,mitochondria ,neurodegeneration ,business.industry ,Neurodegeneration ,Amyotrophic Lateral Sclerosis ,Skeletal muscle ,trimetazidine ,Motor neuron ,Spinal cord ,medicine.disease ,Mitochondria ,medicine.anatomical_structure ,medicine ,Amyotrophic lateral sclerosis ,business ,Neuroinflammation ,medicine.drug - Abstract
Background and purpose: Amyotrophic lateral sclerosis (ALS), a neurodegenerative disease characterized by the degeneration of upper and lower motor neurons, progressive wasting and paralysis of voluntary muscles is currently incurable despite intense research and numerous unsuccessful clinical trials. Although considered as a pure motor neuron disease, increasing evidence indicates that the sole protection of motor neurons by a single target drug is not sufficient to improve the pathological phenotype. We therefore evaluated the therapeutic potential of the multi-target drug, trimetazidine, in SOD1G93A mice. Experimental approach: Trimetazidine is an anti-ischemic drug used for the treatment of coronary artery disease. As a metabolic modulator, Trimetazidine improves glucose metabolism. Furthermore, Trimetazidine enhances mitochondrial metabolism and promotes nerve regeneration, exerting an anti-inflammatory and antioxidant effect. Here, we orally treated SOD1G93A mice with Trimetazidine, solubilized in drinking water at a dose of 20 mg/kg, from disease onset. We assessed the impact of Trimetazidine on disease progression by studying metabolic parameters, grip strength, and histological alterations in skeletal muscle, peripheral nerve and spinal cord. Key results: Trimetazidine administration delays motor function decline, improves muscle performance and metabolism, and significantly extends overall survival of SOD1G93A mice (increased median survival of 16 days and 12.5 days for male and female respectively). Moreover, Trimetazidine prevents the dismantlement of neuromuscular junctions, attenuates motor neuron loss and reduces neuroinflammation in the spinal cord and in peripheral nerves. Conclusion and implications: In SOD1G93A mice, therapeutic effect of Trimetazidine is underpinned by its action on mitochondrial function in skeletal muscle and spinal cord. Keywords: Amyotrophic Lateral Sclerosis; Hypermetabolism; Mitochondria; Neurodegeneration; SOD1G93A mice; Trimetazidine.
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- 2022
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24. Repurposing of Trimetazidine for amyotrophic lateral sclerosis: A study in SOD1
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Silvia, Scaricamazza, Illari, Salvatori, Susanna, Amadio, Valentina, Nesci, Alessio, Torcinaro, Giacomo, Giacovazzo, Aniello, Primiano, Michela, Gloriani, Niccolò, Candelise, Luisa, Pieroni, Jean-Philippe, Loeffler, Frederique, Renè, Cyril, Quessada, Tesfaye W, Tefera, Hao, Wang, Frederik J, Steyn, Shyuan T, Ngo, Gabriella, Dobrowolny, Elisa, Lepore, Andrea, Urbani, Antonio, Musarò, Cinzia, Volonté, Elisabetta, Ferraro, Roberto, Coccurello, Cristiana, Valle, and Alberto, Ferri
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Male ,Disease Models, Animal ,Mice ,Superoxide Dismutase-1 ,Superoxide Dismutase ,Amyotrophic Lateral Sclerosis ,Drug Repositioning ,Trimetazidine ,Animals ,Female ,Mice, Transgenic ,Neurodegenerative Diseases - Abstract
Amyotrophic lateral sclerosis (ALS), a neurodegenerative disease characterized by the degeneration of upper and lower motor neurons, progressive wasting and paralysis of voluntary muscles and is currently incurable. Although considered to be a pure motor neuron disease, increasing evidence indicates that the sole protection of motor neurons by a single targeted drug is not sufficient to improve the pathological phenotype. We therefore evaluated the therapeutic potential of the multi-target drug used to treatment of coronary artery disease, trimetazidine, in SOD1As a metabolic modulator, trimetazidine improves glucose metabolism. Furthermore, trimetazidine enhances mitochondrial metabolism and promotes nerve regeneration, exerting an anti-inflammatory and antioxidant effect. We orally treated SOD1Trimetazidine administration delays motor function decline, improves muscle performance and metabolism, and significantly extends overall survival of SOD1In SOD1
- Published
- 2021
25. Monocyte CD14 and HLA-DR expression increases with disease duration and severity in amyotrophic lateral sclerosis
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Frederik J. Steyn, Pamela A. McCombe, Trent M. Woodruff, Robert D. Henderson, Susan Heggie, Raquel B McGill, Shyuan T. Ngo, and Kathryn A Thorpe
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Myeloid ,CD14 ,Population ,Lipopolysaccharide Receptors ,CD16 ,Monocytes ,Immune system ,medicine ,HLA-DR ,Humans ,Longitudinal Studies ,Amyotrophic lateral sclerosis ,education ,education.field_of_study ,business.industry ,Monocyte ,Amyotrophic Lateral Sclerosis ,HLA-DR Antigens ,medicine.disease ,Flow Cytometry ,medicine.anatomical_structure ,Neurology ,Immunology ,Neurology (clinical) ,business ,Biomarkers - Abstract
Objective: To investigate changes in immune markers and frequencies throughout disease progression in patients with amyotrophic lateral sclerosis (ALS). Methods: In this longitudinal study, serial blood samples were collected from 21 patients with ALS over a time period of up to 16 months. Flow cytometry was used to quantitate CD14, HLA-DR, and CD16 marker expression on monocyte subpopulations and neutrophils, as well as their cell population frequencies. A Generalized Estimating Equation model was used to assess the association between changes in these immune parameters and disease duration and the Revised Amyotrophic Lateral Sclerosis Functional Rating Scale (ALSFRS-R). Results: CD14 expression on monocyte subpopulations increased with both disease duration and a decrease in ALSFRS-R score in patients with ALS. HLA-DR expression on monocyte subpopulations also increased with disease severity and/or duration. The expression of CD16 did not change relative to disease duration or ALSFRS-R. Finally, patients had a reduction in non-classical monocytes and an increase in the classical to non-classical monocyte ratio throughout disease duration. Conclusion: The progressive immunological changes observed in this study provide further support that monocytes are implicated in ALS pathology. Monocytic CD14 and HLA-DR surface proteins may serve as a therapeutic target or criteria for the recruitment of patients with ALS into clinical trials for immunomodulatory therapies.
- Published
- 2021
26. Gut microbiota in ALS: possible role in pathogenesis?
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Allan F. McRae, Trent M. Woodruff, Pamela A. McCombe, Robert D. Henderson, Naomi R. Wray, John D. Lee, Frederik J. Steyn, Aven Lee, Shyuan T. Ngo, and Restuadi Restuadi
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Context (language use) ,Gut flora ,Bioinformatics ,digestive system ,Pathogenesis ,03 medical and health sciences ,Human health ,0302 clinical medicine ,medicine ,Animals ,Humans ,Pharmacology (medical) ,Microbiome ,Amyotrophic lateral sclerosis ,biology ,General Neuroscience ,Amyotrophic Lateral Sclerosis ,digestive, oral, and skin physiology ,medicine.disease ,biology.organism_classification ,Gastrointestinal Microbiome ,030227 psychiatry ,Dysbiosis ,Neurology (clinical) ,Gut dysbiosis ,030217 neurology & neurosurgery - Abstract
Introduction: The gut microbiota has important roles in maintaining human health. The microbiota and its metabolic byproducts could play a role in the pathogenesis of neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS). Areas covered: The authors evaluate the methods of assessing the gut microbiota, and also review how the gut microbiota affects the various physiological functions of the gut. The authors then consider how gut dysbiosis could theoretically affect the pathogenesis of ALS. They present the current evidence regarding the composition of the gut microbiota in ALS and in rodent models of ALS. Finally, the authors review therapies that could improve gut dysbiosis in the context of ALS. Expert opinion: Currently reported studies suggest some instances of gut dysbiosis in ALS patients and mouse models; however, these studies are limited, and more information with well-controlled larger datasets is required to make a definitive judgment about the role of the gut microbiota in ALS pathogenesis. Overall this is an emerging field that is worthy of further investigation. The authors advocate for larger studies using modern metagenomic techniques to address the current knowledge gaps.
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- 2019
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27. Venous creatinine as a biomarker for loss of fat-free mass and disease progression in patients with amyotrophic lateral sclerosis
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Pamela A. McCombe, Ruben P A van Eijk, Robert D. Henderson, Leonard H. van den Berg, Mark R Janse van Mantgem, Frederik J. Steyn, Stephanie L Howe, Shyuan T. Ngo, and Cory J Holdom
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medicine.medical_specialty ,Creatinine ,business.industry ,Disease progression ,Amyotrophic Lateral Sclerosis ,Australia ,medicine.disease ,Gastroenterology ,chemistry.chemical_compound ,Neurology ,chemistry ,Fat free mass ,Internal medicine ,Cohort ,medicine ,Disease Progression ,Biomarker (medicine) ,Humans ,In patient ,Neurology (clinical) ,Amyotrophic lateral sclerosis ,business ,Natural history study ,Biomarkers - Abstract
To establish the utility of venous creatinine as a biomarker to monitor loss of fat-free mass in patients with amyotrophic lateral sclerosis (ALS).In this multicenter natural history study, body composition and venous creatinine were assessed in 107 patients with ALS and 52 healthy controls. Longitudinal patterns of venous creatinine and its association with the risk of death during follow-up were determined in a cohort of patients with ALS from Australia (n = 69) and the Netherlands (n = 38).The mean levels of venous creatinine were 75.78 ± 11.15 μmol/L for controls, 70.25 ± 12.81 μmol/L for Australian patients, and 59.95 ± 14.62 μmol/L for Dutch patients with ALS. The relationship between measures of venous creatinine and fat-free mass was similar between all groups (r = 0.36, p 0.001). Within patients, fat-free mass declined by 0.31 (95% confidence interval [CI]: 0.22-0.40) kg/month, and venous creatinine declined by 0.52 (95% CI: 0.38-0.66) μmol/L/month, with a longitudinal correlation of 0.57 (95% CI: 0.35-0.76, p 0.001). Lower levels of venous creatinine were associated with increased risk for earlier death in patients with ALS (hazard ratio = 0.94, 95% CI: 0.90-0.98, p = 0.007).Venous creatinine is decreased in ALS and declines alongside a decline in fat-free mass over the course of the disease, and may serve as a practical marker to monitor the change of fat-free mass in patients with ALS. This could inform clinical care and provide an alternative endpoint for the evaluation of therapeutic interventions that focus on slowing the loss of fat-free mass and disease progression in ALS.
- Published
- 2021
28. Skeletal Muscle Metabolism: Origin or Prognostic Factor for Amyotrophic Lateral Sclerosis (ALS) Development?
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Frédérique René, Alberto Ferri, Cristiana Valle, Cyril Quessada, Jean Philippe Loeffler, Shyuan T. Ngo, Alexandra Bouscary, Mécanismes Centraux et Périphériques de la Neurodégénérescence, Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Neuro-sys SAS [Gardanne], Fondazione Santa Lucia [IRCCS], Clinical and Behavioral Neurology [IRCCS Santa Lucia], University of Queensland [Brisbane], Neuro-sys, and Dieterle, Stéphane
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Male ,0301 basic medicine ,Prognostic factor ,Pathology ,medicine.medical_specialty ,Amyotrphic Lateral Sclerosis ,QH301-705.5 ,trimetazidine ,[SDV]Life Sciences [q-bio] ,Trimetazidine ,PDK4 ,Review ,Neuromuscular junction ,03 medical and health sciences ,Superoxide Dismutase-1 ,0302 clinical medicine ,hypermetabolism ,Animals ,Humans ,Medicine ,Biology (General) ,Amyotrophic lateral sclerosis ,skeletal muscle ,Muscle, Skeletal ,neuromuscular junction ,business.industry ,Amyotrophic Lateral Sclerosis ,Skeletal muscle ,General Medicine ,Metabolism ,medicine.disease ,3. Good health ,[SDV] Life Sciences [q-bio] ,030104 developmental biology ,medicine.anatomical_structure ,Hypermetabolism ,ALS ,business ,030217 neurology & neurosurgery ,metabolic imbalance ,medicine.drug - Abstract
International audience; Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by progressive and selective loss of motor neurons, amyotrophy and skeletal muscle paralysis usually leading to death due to respiratory failure. While generally considered an intrinsic motor neuron disease, data obtained in recent years, including our own, suggest that motor neuron protection is not sufficient to counter the disease. The dismantling of the neuromuscular junction is closely linked to chronic energy deficit found throughout the body. Metabolic (hypermetabolism and dyslipidemia) and mitochondrial alterations described in patients and murine models of ALS are associated with the development and progression of disease pathology and they appear long before motor neurons die. It is clear that these metabolic changes participate in the pathology of the disease. In this review, we summarize these changes seen throughout the course of the disease, and the subsequent impact of glucose–fatty acid oxidation imbalance on disease progression. We also highlight studies that show that correcting this loss of metabolic flexibility should now be considered a major goal for the treatment of ALS.
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- 2021
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29. Meta-analysis of genome-wide DNA methylation identifies shared associations across neurodegenerative disorders
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Simon J.G. Lewis, Jan H. Veldink, Iwona Kłoszewska, Jonathan Mill, Nicola J. Armstrong, Eilis Hannon, Allan F. McRae, Simon M. Laws, Pamela J. Shaw, Katie Lunnon, Pamela A. McCombe, Ammar Al-Chalabi, Anjali K. Henders, Marta F. Nabais, Alfredo Iacoangeli, Glenda M. Halliday, Susan Mathers, John B.J. Kwok, Ashley R. Jones, Anna J. Stevenson, Ian B. Hickie, Tian Lin, Cristopher E. Shaw, Ian P. Blair, Hilkka Soininen, Wouter van Rheenen, Karen E. Morrison, Jacob Gratten, Toni L. Pitcher, Ian J. Deary, Janou A. Y. Roubroeks, Shyuan T. Ngo, Tim J. Anderson, Sarah Furlong, Merrilee Needham, Peter M. Visscher, Peter A. Silburn, Ramona A. J. Zwamborn, Karen A. Mather, Patrizia Mecocci, Naomi R. Wray, Roger Pamphlett, Paul J. Hop, Garth A. Nicholson, John F. Pearson, Jian Yang, Simon Lovestone, Kelly L. Williams, Costanza L. Vallerga, Magda Tsolaki, Ehsan Pishva, Robert D. Henderson, Futao Zhang, Grant W. Montgomery, Bruno Vellas, Robert F. Hillary, Steven R. Bentley, John C. Dalrymple-Alford, Frederik J. Steyn, Riccardo E. Marioni, Dominic B. Rowe, Leanne Wallace, Leonard H. van den Berg, Aleksey Shatunov, Sarah E. Harris, Perminder S. Sachdev, Fleur C. Garton, George D. Mellick, Javed Fowder, Martin A. Kennedy, and Internal Medicine
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lcsh:QH426-470 ,Inflammatory markers ,Disease ,Biology ,Epigenesis, Genetic ,Genetic ,Methylation profile score ,Out-of-sample classification ,Genetic variation ,Mixed-linear models ,medicine ,Humans ,Genetic Predisposition to Disease ,Amyotrophic lateral sclerosis ,lcsh:QH301-705.5 ,Alleles ,Genetic association ,Genetics ,Blood Cells ,DNA methylation ,Genetic heterogeneity ,Research ,Gene Expression Profiling ,dNaM ,Neurodegenerative Diseases ,medicine.disease ,Human genetics ,lcsh:Genetics ,lcsh:Biology (General) ,Genetic Loci ,Case-Control Studies ,Neurodegenerative disorders ,Disease Susceptibility ,Biomarkers ,Epigenesis ,Genome-Wide Association Study - Abstract
Background People with neurodegenerative disorders show diverse clinical syndromes, genetic heterogeneity, and distinct brain pathological changes, but studies report overlap between these features. DNA methylation (DNAm) provides a way to explore this overlap and heterogeneity as it is determined by the combined effects of genetic variation and the environment. In this study, we aim to identify shared blood DNAm differences between controls and people with Alzheimer’s disease, amyotrophic lateral sclerosis, and Parkinson’s disease. Results We use a mixed-linear model method (MOMENT) that accounts for the effect of (un)known confounders, to test for the association of each DNAm site with each disorder. While only three probes are found to be genome-wide significant in each MOMENT association analysis of amyotrophic lateral sclerosis and Parkinson’s disease (and none with Alzheimer’s disease), a fixed-effects meta-analysis of the three disorders results in 12 genome-wide significant differentially methylated positions. Predicted immune cell-type proportions are disrupted across all neurodegenerative disorders. Protein inflammatory markers are correlated with profile sum-scores derived from disease-associated immune cell-type proportions in a healthy aging cohort. In contrast, they are not correlated with MOMENT DNAm-derived profile sum-scores, calculated using effect sizes of the 12 differentially methylated positions as weights. Conclusions We identify shared differentially methylated positions in whole blood between neurodegenerative disorders that point to shared pathogenic mechanisms. These shared differentially methylated positions may reflect causes or consequences of disease, but they are unlikely to reflect cell-type proportion differences.
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- 2021
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30. Lipids: Key players in central nervous system cell physiology and pathology
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Shyuan T. Ngo
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Cell physiology ,Central Nervous System ,Central nervous system ,Cell Biology ,Biology ,Lipids ,Cell Physiological Phenomena ,medicine.anatomical_structure ,Interneurons ,medicine ,Key (cryptography) ,Humans ,Neuroscience ,Developmental Biology - Published
- 2021
31. CNS glucose metabolism in Amyotrophic Lateral Sclerosis: a therapeutic target?
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Karin Borges, Tesfaye Wolde Tefera, Shyuan T. Ngo, and Frederik J. Steyn
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Bioenergetics ,lcsh:Biotechnology ,Review ,Oxidative phosphorylation ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,lcsh:Biochemistry ,lcsh:TP248.13-248.65 ,medicine ,lcsh:QD415-436 ,Glycolysis ,Motor neuron disease ,Neurodegeneration ,Amyotrophic lateral sclerosis ,Pentose phosphate pathway ,TCA cycle ,lcsh:QH301-705.5 ,Glucose metabolism ,business.industry ,Glucose transporter ,medicine.disease ,Brain energy metabolism ,Neuro-glial interactions ,lcsh:Biology (General) ,Hypermetabolism ,Mitochondrial dysfunction ,business ,Neuroscience ,Oxidative stress - Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal progressive neurodegenerative disorder primarily characterized by selective degeneration of both the upper motor neurons in the brain and lower motor neurons in the brain stem and the spinal cord. The exact mechanism for the selective death of neurons is unknown. A growing body of evidence demonstrates abnormalities in energy metabolism at the cellular and whole-body level in animal models and in people living with ALS. Many patients with ALS exhibit metabolic changes such as hypermetabolism and body weight loss. Despite these whole-body metabolic changes being observed in patients with ALS, the origin of metabolic dysregulation remains to be fully elucidated. A number of pre-clinical studies indicate that underlying bioenergetic impairments at the cellular level may contribute to metabolic dysfunctions in ALS. In particular, defects in CNS glucose transport and metabolism appear to lead to reduced mitochondrial energy generation and increased oxidative stress, which seem to contribute to disease progression in ALS. Here, we review the current knowledge and understanding regarding dysfunctions in CNS glucose metabolism in ALS focusing on metabolic impairments in glucose transport, glycolysis, pentose phosphate pathway, TCA cycle and oxidative phosphorylation. We also summarize disturbances found in glycogen metabolism and neuroglial metabolic interactions. Finally, we discuss options for future investigations into how metabolic impairments can be modified to slow disease progression in ALS. These investigations are imperative for understanding the underlying causes of metabolic dysfunction and subsequent neurodegeneration, and to also reveal new therapeutic strategies in ALS.
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- 2021
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32. Author response for 'Ghrelin as a treatment for amyotrophic lateral sclerosis'
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null Shyuan T. Ngo, null Hao Wang, null Robert D. Henderson, null Cyril Bowers, and null Frederik J. Steyn
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- 2021
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33. Ghrelin as a treatment for amyotrophic lateral sclerosis
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Robert D. Henderson, Shyuan T. Ngo, Cyril Y. Bowers, Hao Wang, and Frederik J. Steyn
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medicine.medical_specialty ,Anabolism ,Endocrinology, Diabetes and Metabolism ,media_common.quotation_subject ,030209 endocrinology & metabolism ,Disease ,Neuroprotection ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Endocrinology ,Internal medicine ,medicine ,Amyotrophic lateral sclerosis ,media_common ,Endocrine and Autonomic Systems ,business.industry ,digestive, oral, and skin physiology ,Appetite ,medicine.disease ,Growth hormone secretion ,Ghrelin ,business ,030217 neurology & neurosurgery ,Hormone - Abstract
Ghrelin is a gut hormone best known for its role in regulating appetite and stimulating the secretion of the anabolic hormone growth hormone (GH). However, there is considerable evidence to show wider-ranging biological actions of ghrelin that favour improvements in cellular and systemic metabolism, as well as neuroprotection. Activation of these ghrelin-mediated pathways may alleviate pathogenic processes that are assumed to contribute to accelerated progression of disease in patients with neurodegenerative disease. Here, we provide a brief overview on the history of discoveries that led to the identification of ghrelin. Focussing on the neurodegenerative disease amyotrophic lateral sclerosis (ALS), we also present an overview of emerging evidence that suggests that ghrelin and ghrelin mimetics may serve as potential therapies for the treatment of ALS. Given that ALS is a highly heterogeneous disease, where multiple disease mechanisms contribute to variability in disease onset and rate of disease progression, we speculate that the wide-ranging biological actions of ghrelin might offer therapeutic benefit through modulating multiple disease-relevant processes observed in ALS. Expanding on the well-known actions of ghrelin in regulating food intake and GH secretion, we consider the potential of ghrelin-mediated pathways in improving body weight regulation, metabolism and the anabolic and neuroprotective actions of GH and insulin-like growth factor-1 (IGF-1). This is of clinical significance because loss of body weight, impairments in systemic and cellular metabolism, and reductions in IGF-1 are associated with faster disease progression and worse disease outcome in patients with ALS.
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- 2021
34. A Road Map for Remote Digital Health Technology for Motor Neuron Disease
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Ruben P A van Eijk, Miguel Ángel Rubio Pérez, Angela Genge, Jochem Helleman, Frederik J. Steyn, Anita Beelen, Tom Burke, Deirdre Murray, Shyuan T. Ngo, Leonard H. van den Berg, Orla Hardiman, Ratko Radakovic, Kit C.B. Roes, John Eaglesham, Esther Hobson, Liam Knox, Evy Reviers, Esther T. Kruitwagen, and Christopher J McDermott
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Technology ,amyotrophic lateral sclerosis ,Process management ,business.industry ,Computer science ,Health Personnel ,Biomedical Technology ,Health Informatics ,Harmonization ,Disease ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Digital health ,Personalization ,Viewpoint ,All institutes and research themes of the Radboud University Medical Center ,Caregivers ,Health care ,digital health care technology ,Key (cryptography) ,Humans ,e-health ,Road map ,Motor Neuron Disease ,business ,Biomedical technology - Abstract
Despite recent and potent technological advances, the real-world implementation of remote digital health technology in the care and monitoring of patients with motor neuron disease has not yet been realized. Digital health technology may increase the accessibility to and personalization of care, whereas remote biosensors could optimize the collection of vital clinical parameters, irrespective of patients’ ability to visit the clinic. To facilitate the wide-scale adoption of digital health care technology and to align current initiatives, we outline a road map that will identify clinically relevant digital parameters; mediate the development of benefit-to-burden criteria for innovative technology; and direct the validation, harmonization, and adoption of digital health care technology in real-world settings. We define two key end products of the road map: (1) a set of reliable digital parameters to capture data collected under free-living conditions that reflect patient-centric measures and facilitate clinical decision making and (2) an integrated, open-source system that provides personalized feedback to patients, health care providers, clinical researchers, and caregivers and is linked to a flexible and adaptable platform that integrates patient data in real time. Given the ever-changing care needs of patients and the relentless progression rate of motor neuron disease, the adoption of digital health care technology will significantly benefit the delivery of care and accelerate the development of effective treatments.
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- 2021
35. Genome-wide study of DNA methylation in Amyotrophic Lateral Sclerosis identifies differentially methylated loci and implicates metabolic, inflammatory and cholesterol pathways
- Author
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Orla Hardiman, Karen E. Morrison, Johnathan Cooper-Knock, Susan Mathers, Matthieu Moisse, Kevin P. Kenna, Michal Zabari, Ruben J. Cauchi, Jonathan Mill, Maurizio Grassano, Paul J. Hop, de Carvalho M, Allan F. McRae, John Landers, Heiko Runz, Basak An, Lerner Y, Mònica Povedano, Drory, Patrick Vourc'h, Philippe Couratier, van Rheenen W, Jan H. Veldink, Denis Baird, Antonia Ratti, Van Damme P, Garth A. Nicholson, Andrea Calvo, van Vugt Jj, Nicola Ticozzi, Eilis Hannon, Antonio Canosa, Silani, Matthew C. Kiernan, Ian P. Blair, Guy A. Rouleau, Mitne Neto M, Kelly L. Williams, Christopher Shaw, Emma Walker, Markus Weber, Frederik J. Steyn, Anjali K. Henders, Peter M. Andersen, Marta F. Nabais, Henk-Jan Westeneng, Dominic B. Rowe, Ramona A. J. Zwamborn, Salas T, Susana Pinto, Shyuan T. Ngo, van den Berg Lh, Sarah Furlong, Adriano Chiò, Mora Pardina Js, Marc Gotkine, Leanne Wallace, Al Khleifat A, Naomi R. Wray, Tian Lin, Roger Pamphlett, Ellen A. Tsai, Alfredo Iacoangeli, Gijs H.P. Tazelaar, Robert D. Henderson, van Es Ma, Pamela J. Shaw, Annelot M. Dekker, Ammar Al-Chalabi, Pamela A. McCombe, Maura Brunetti, Merrilee Needham, Philippe Corcia, Karen A. Mather, Gemma Shireby, Jay P. Ross, Russell L. McLaughlin, Pasterkamp Rj, van Eijk Kr, Patrick A. Dion, Cristina Moglia, Perminder S. Sachdev, and Fleur C. Garton
- Subjects
Genetics ,Genome-wide association study ,Disease ,Biology ,medicine.disease ,Genome ,Blood cell ,medicine.anatomical_structure ,White blood cell ,DNA methylation ,Brain MEND Consortium ,medicine ,BIOS Consortium ,Amyotrophic lateral sclerosis ,Gene - Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with an estimated heritability of around 50%. DNA methylation patterns can serve as biomarkers of (past) exposures and disease progression, as well as providing a potential mechanism that mediates genetic or environmental risk. Here, we present a blood-based epigenome-wide association study (EWAS) meta-analysis in 10,462 samples (7,344 ALS patients and 3,118 controls), representing the largest case-control study of DNA methylation for any disease to date. We identified a total of 45 differentially methylated positions (DMPs) annotated to 42 genes, which are enriched for pathways and traits related to metabolism, cholesterol biosynthesis, and immunity. We show that DNA-methylation-based proxies for HDL-cholesterol, BMI, white blood cell (WBC) proportions and alcohol intake were independently associated with ALS. Integration of these results with our latest GWAS showed that cholesterol biosynthesis was causally related to ALS. Finally, we found that DNA methylation levels at several DMPs and blood cell proportion estimates derived from DNA methylation data, are associated with survival rate in patients, and could represent indicators of underlying disease processes.
- Published
- 2021
36. Disorders of sleep and wakefulness in amyotrophic lateral sclerosis (ALS): a systematic review
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Shyuan T. Ngo, D. Lucia, Pamela A. McCombe, and Robert D. Henderson
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Sleep Wake Disorders ,medicine.medical_specialty ,Polysomnography ,Excessive daytime sleepiness ,Disease ,Pittsburgh Sleep Quality Index ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Medicine ,Humans ,Amyotrophic lateral sclerosis ,Wakefulness ,medicine.diagnostic_test ,business.industry ,Epworth Sleepiness Scale ,Amyotrophic Lateral Sclerosis ,medicine.disease ,Sleep in non-human animals ,Neurology ,Neurology (clinical) ,medicine.symptom ,business ,Sleep ,030217 neurology & neurosurgery - Abstract
Disorders of sleep and wakefulness are common among neurodegenerative diseases. While amyotrophic lateral sclerosis (ALS) predominately manifests as motor symptoms, there is emerging evidence that disruptions to sleep and wakefulness also occur. This systematic review aims to report the most common disorders of sleep and wakefulness in ALS. We conducted a qualitative systematic review as per PRISMA guidelines and searched literature assessing the association between disorders of sleep and wakefulness with ALS using the PubMed and Medline database. Overall, 50-63% of patients with ALS have poor sleep quality as reported using the Pittsburgh Sleep Quality Index Questionnaire (PSQI). A higher proportion of ALS patients are categorized as poor sleepers, however there is conflicting evidence as to whether patients with ALS are more likely to exhibit excessive daytime sleepiness. Of the studies that utilized polysomnography, all reported various degrees of impairment to sleep microstructure and architecture among ALS patients. In future, longitudinal clinical studies will be essential for establishing the significance of impaired sleep in ALS. Future studies are also needed to establish whether the self-reported measures of poor sleep and impairment to sleep architecture occurs as a direct consequence of the disease, whether they are an early manifestation of the disease, and/or if they contribute to the neurodegenerative process.
- Published
- 2020
37. Drug repositioning in neurodegeneration: An overview of the use of ambroxol in neurodegenerative diseases
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Michael Spedding, Alexandre Henriques, Frédérique René, Cyril Quessada, Alexandra Bouscary, Jean-Philippe Loeffler, Shyuan T. Ngo, Mécanismes Centraux et Périphériques de la Neurodégénérescence, Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg (UNISTRA), Spedding Research Solutions SAS [Le Vesinet, France], Neuro-sys, University of Southern Queensland (USQ), Queensland Brain Institute, University of Queensland [Brisbane], Dieterle, Stéphane, and Neuro-sys SAS [Gardanne]
- Subjects
0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Ambroxol ,GBA2 ,Disease ,Bioinformatics ,Neurodegenerative disease ,MESH: Glucosylceramidase ,MESH: Nerve Degeneration ,MESH: Spinal Cord ,Superoxide Dismutase-1 ,0302 clinical medicine ,Medicine ,MESH: Animals ,Enzyme Inhibitors ,Amyotrophic lateral sclerosis ,MESH: Amyotrophic Lateral Sclerosis ,MESH: Superoxide Dismutase-1 ,beta-Glucosidase ,Neurodegeneration ,MESH: Neuroprotective Agents ,3. Good health ,[SDV] Life Sciences [q-bio] ,Drug repositioning ,Neuroprotective Agents ,medicine.anatomical_structure ,Spinal Cord ,MESH: Enzyme Inhibitors ,Disease Progression ,Glucosylceramidase ,MESH: Disease Progression ,MESH: Drug Repositioning ,medicine.drug ,MESH: Mutation ,03 medical and health sciences ,Animals ,Humans ,Pharmacology ,MESH: Ambroxol ,MESH: Humans ,business.industry ,Amyotrophic Lateral Sclerosis ,Drug Repositioning ,MESH: beta-Glucosidase ,Motor neuron ,medicine.disease ,Spinal cord ,Disease Models, Animal ,030104 developmental biology ,Mutation ,Nerve Degeneration ,Glucosylceramide ,ALS ,MESH: Disease Models, Animal ,business ,Glucocerebrosidase ,030217 neurology & neurosurgery - Abstract
International audience; Amyotrophic lateral sclerosis (ALS) is the most common motor neuron disease in adults. While it is primarily characterized by the death of upper and lower motor neurons, there is a significant metabolic component involved in the progression of the disease. Two-thirds of ALS patients have metabolic alterations that are associated with the severity of symptoms. In ALS, as in other neurodegenerative diseases, the metabolism of glycosphingolipids, a class of complex lipids, is strongly dysregulated. We therefore assume that this pathway constitutes an interesting avenue for therapeutic approaches. We have shown that the glucosylceramide degrading enzyme, glucocerebrosidase (GBA) 2 is abnormally increased in the spinal cord of the SOD1G86R mouse model of ALS. Ambroxol, a chaperone molecule that inhibits GBA2, has been shown to have beneficial effects by slowing the development of the disease in SOD1G86R mice. Currently used in clinical trials for Parkinson's and Gaucher disease, ambroxol could be considered as a promising therapeutic treatment for ALS.
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- 2020
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38. Genome-wide Meta-analysis Finds the ACSL5-ZDHHC6 Locus Is Associated with ALS and Links Weight Loss to the Disease Genetics
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Robert D. Henderson, Ashley R. Jones, Ian P. Blair, Stephen J. Newhouse, Tian Lin, Roger Pamphlett, Sarah Opie-Martin, Shyuan T. Ngo, Richard Dobson, Perminder S. Sachdev, Dominic B. Rowe, Pamela A. McCombe, Anjali K. Henders, Fleur C. Garton, Jonathan R. I. Coleman, Ammar Al-Chalabi, Aleksey Shatunov, Merilee Needham, Isabella Fogh, Karen A. Mather, Frederik J. Steyn, Alfredo Iacoangeli, Naomi R. Wray, Garth A. Nicholson, Restuadi Restuadi, Ahmad Al Khleifat, Kelly L. Williams, William Sproviero, David Schultz, Susan Mathers, and Petroula Proitsi
- Subjects
0301 basic medicine ,Longitudinal study ,amyotrophic lateral sclerosis ,Locus (genetics) ,Single-nucleotide polymorphism ,Genome-wide association study ,Biology ,Polymorphism, Single Nucleotide ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Weight loss ,Report ,Weight Loss ,medicine ,genomics ,Humans ,genetics ,Genetic Predisposition to Disease ,Allele ,Amyotrophic lateral sclerosis ,Genetics ,genome-wide association study ,eQTLs ,longitudinal study ,medicine.disease ,fat-free mass ,030104 developmental biology ,Cohort ,motor neuron disease ,cross-ethnic meta-analysis ,medicine.symptom ,030217 neurology & neurosurgery ,Acyltransferases - Abstract
Summary We meta-analyze amyotrophic lateral sclerosis (ALS) genome-wide association study (GWAS) data of European and Chinese populations (84,694 individuals). We find an additional significant association between rs58854276 spanning ACSL5-ZDHHC6 with ALS (p = 8.3 × 10−9), with replication in an independent Australian cohort (1,502 individuals; p = 0.037). Moreover, B4GALNT1, G2E3-SCFD1, and TRIP11-ATXN3 are identified using a gene-based analysis. ACSL5 has been associated with rapid weight loss, as has another ALS-associated gene, GPX3. Weight loss is frequent in ALS patients and is associated with shorter survival. We investigate the effect of the ACSL5 and GPX3 single-nucleotide polymorphisms (SNPs), using longitudinal body composition and weight data of 77 patients and 77 controls. In patients’ fat-free mass, although not significant, we observe an effect in the expected direction (rs58854276: −2.1 ± 1.3 kg/A allele, p = 0.053; rs3828599: −1.0 ± 1.3 kg/A allele, p = 0.22). No effect was observed in controls. Our findings support the increasing interest in lipid metabolism in ALS and link the disease genetics to weight loss in patients., Graphical Abstract, Highlights • Cross-ethnic meta-analysis finds an association between the ACSL5-ZDHHC6 locus and ALS • The ACSL5-ZDHHC6 association is replicated in an independent Australian cohort • ACSL5-ZDHHC6 lead SNP is in ACSL5 and is an eQTL of ZDHHC6 in brain tissues • ACSL5 SNPs might have an effect on fat-free mass in ALS patients, Using meta-analysis of European and Chinese ALS GWAS data, Iacoangeli et al. find an association between ACSL5-ZDHHC6 and ALS risk, with replication in an Australian cohort. They identify B4GALNT1, G2E3-SCFD1, and TRIP11-ATXN3 using a gene-based analysis. They also find a suggestive association between ACSL5 SNPs and lower fat-free mass in patients.
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- 2020
39. Altered skeletal muscle glucose–fatty acid flux in amyotrophic lateral sclerosis
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Robert D. Henderson, Sarah Chapman, Dean Kelk, Llion A. Roberts, W. Matthew Leevy, Cristiana Valle, Rui Li, Elyse Wimberger, Alberto Ferri, Frederik J. Steyn, Jeff S. Coombes, Pamela A. McCombe, Shyuan T. Ngo, T. Y. Xie, Tesfaye Wolde Tefera, Jean-Philippe Loeffler, Timothy J. Tracey, Frédérique René, Siobhan E Kirk, Fleur C. Garton, University of Southern Queensland (USQ), Royal Brisbane & Women's Hospital [Brisbane, Australia] (RBWH), The Wesley Hospital [Auchenflower, Australia] (TWH), Griffith University [Brisbane], University of Notre Dame [Indiana] (UND), Fondazione Santa Lucia [IRCCS], Clinical and Behavioral Neurology [IRCCS Santa Lucia], Institute of Translational Pharmacology - Istituto di Farmacologia Traslazionale [Roma] (IFT), Consiglio Nazionale delle Ricerche [Roma] (CNR), Mécanismes Centraux et Périphériques de la Neurodégénérescence, Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), and Dieterle, Stéphane
- Subjects
medicine.medical_specialty ,amyotrophic lateral sclerosis ,[SDV]Life Sciences [q-bio] ,Superoxide dismutase ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,hypermetabolism ,Glycolysis ,Amyotrophic lateral sclerosis ,skeletal muscle ,Beta oxidation ,fatty acid oxidation ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,AcademicSubjects/SCI01870 ,General Engineering ,Skeletal muscle ,Fatty acid ,glucose oxidation ,medicine.disease ,[SDV] Life Sciences [q-bio] ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Hypermetabolism ,biology.protein ,Original Article ,AcademicSubjects/MED00310 ,Flux (metabolism) ,030217 neurology & neurosurgery - Abstract
Amyotrophic lateral sclerosis is characterized by the degeneration of upper and lower motor neurons, yet an increasing number of studies in both mouse models and patients with amyotrophic lateral sclerosis suggest that altered metabolic homeostasis is also a feature of disease. Pre-clinical and clinical studies have shown that modulation of energy balance can be beneficial in amyotrophic lateral sclerosis. However, the capacity to target specific metabolic pathways or mechanisms requires detailed understanding of metabolic dysregulation in amyotrophic lateral sclerosis. Here, using the superoxide dismutase 1, glycine to alanine substitution at amino acid 93 (SOD1G93A) mouse model of amyotrophic lateral sclerosis, we demonstrate that an increase in whole-body metabolism occurs at a time when glycolytic muscle exhibits an increased dependence on fatty acid oxidation. Using myotubes derived from muscle of amyotrophic lateral sclerosis patients, we also show that increased dependence on fatty acid oxidation is associated with increased whole-body energy expenditure. In the present study, increased fatty acid oxidation was associated with slower disease progression. However, within the patient cohort, there was considerable heterogeneity in whole-body metabolism and fuel oxidation profiles. Thus, future studies that decipher specific metabolic changes at an individual patient level are essential for the development of treatments that aim to target metabolic pathways in amyotrophic lateral sclerosis., In superoxide dismutase 1, glycine to alanine substitution at amino acid 93 (SOD1G93A) mice, increased whole-body metabolism occurs alongside fat depletion and increased fatty acid oxidation in glycolytic muscle. Myotubes from patients with amyotrophic lateral sclerosis have increased fatty acid oxidation, and this is associated with increased whole-body energy expenditure. Increased fatty acid oxidation may sustain energy supply to slow disease., Graphical Abstract Graphical Abstract
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- 2020
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40. Sphingolipids metabolism alteration in the central nervous system: Amyotrophic lateral sclerosis (ALS) and other neurodegenerative diseases
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Alexandra Bouscary, Alexandre Henriques, Michael Spedding, Jean-Philippe Loeffler, Shyuan T. Ngo, Bradley J. Turner, Frédérique René, Cyril Quessada, Mécanismes Centraux et Périphériques de la Neurodégénérescence, Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg (UNISTRA), Spedding Research solutions SARL, University of Melbourne, Neuro-sys SAS [Gardanne], University of Queensland [Brisbane], Dieterle, Stéphane, and Neuro-sys
- Subjects
Glucocerebrosidase ,0301 basic medicine ,Nervous system ,Central Nervous System ,Therapeutic target ,[SDV]Life Sciences [q-bio] ,Central nervous system ,Disease ,Biology ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Amyotrophic lateral sclerosis ,Sphingolipids ,Amyotrophic Lateral Sclerosis ,Neurodegenerative Diseases ,Cell Biology ,Metabolism ,medicine.disease ,Lipid Metabolism ,Sphingolipid ,3. Good health ,[SDV] Life Sciences [q-bio] ,carbohydrates (lipids) ,Ambroxol ,030104 developmental biology ,medicine.anatomical_structure ,Glucosylceramide ,lipids (amino acids, peptides, and proteins) ,Altered metabolism ,Neuroscience ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
International audience; Sphingolipids are complex lipids. They play a structural role in neurons, but are also involved in regulating cellular communication, and neuronal differentiation and maturation. There is increasing evidence to suggest that dysregulated metabolism of sphingolipids is linked to neurodegenerative processes in amyotrophic lateral sclerosis (ALS), Parkinson's disease and Gaucher's disease. In this review, we provide an overview of the role of sphingolipids in the development and maintenance of the nervous system. We describe the implications of altered metabolism of sphingolipids in the pathophysiology of certain neurodegenerative diseases, with a primary focus on ALS. Finally, we provide an update of potential treatments that could be used to target the metabolism of sphingolipids in neurodegenerative diseases.
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- 2020
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41. The role of lipids in the central nervous system and their pathological implications in amyotrophic lateral sclerosis
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Siobhan E Kirk, Frederik J. Steyn, Timothy J. Tracey, and Shyuan T. Ngo
- Subjects
0301 basic medicine ,Central Nervous System ,Cell type ,Central nervous system ,Context (language use) ,Mitochondrion ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Organelle ,medicine ,Humans ,Amyotrophic lateral sclerosis ,Neurons ,Amyotrophic Lateral Sclerosis ,Lipid metabolism ,Cell Biology ,medicine.disease ,Sphingolipid ,Lipids ,Mitochondria ,030104 developmental biology ,medicine.anatomical_structure ,Astrocytes ,Neuroscience ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Lipids play an important role in the central nervous system (CNS). They contribute to the structural integrity and physical characteristics of cell and organelle membranes, act as bioactive signalling molecules, and are utilised as fuel sources for mitochondrial metabolism. The intricate homeostatic mechanisms underpinning lipid handling and metabolism across two major CNS cell types; neurons and astrocytes, are integral for cellular health and maintenance. Here, we explore the various roles of lipids in these two cell types. Given that changes in lipid metabolism have been identified in a number of neurodegenerative diseases, we also discuss changes in lipid handling and utilisation in the context of amyotrophic lateral sclerosis (ALS), in order to identify key cellular processes affected by the disease, and inform future areas of research.
- Published
- 2020
42. Prognostic value of weight loss in patients with amyotrophic lateral sclerosis
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Shyuan T. Ngo and Frederik J. Steyn
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Oncology ,Motor Neurons ,medicine.medical_specialty ,business.industry ,Amyotrophic Lateral Sclerosis ,Cognition ,Disease ,medicine.disease ,Prognosis ,Psychiatry and Mental health ,Weight loss ,Internal medicine ,Corticospinal tract ,Weight Loss ,medicine ,Humans ,Surgery ,In patient ,Neurology (clinical) ,Amyotrophic lateral sclerosis ,medicine.symptom ,business ,Pathological ,Median survival - Abstract
Amyotrophic lateral sclerosis (ALS) is an insidious disease. Diagnosis is made following observation of functional deficits that occur due to the death of upper and lower motor neurons. Pathological hallmarks of corticospinal tract involvement are almost always present, whereas upper motor neuron involvement could be subclinical.1 This complex clinicopathological phenotype is now recognised within a wide spectrum of disease that may include extramotor features such as cognitive and behavioural impairments.1 While median survival is currently 3 years following symptom onset, survival could become much longer. Superimposed on this elaborate canvas of presentation and progression is a range of factors thought to impact survival. Van Mantgem and colleagues …
- Published
- 2020
43. Altered skeletal muscle glucose-fatty acid flux in amyotrophic lateral sclerosis (ALS)
- Author
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W. Matthew Leevy, Elyse Wimberger, Sarah Chapman, Jean-Philippe Loeffler, Cristiana Valle, Frédérique René, Pamela A. McCombe, Siobhan E Kirk, Timothy J. Tracey, T. Y. Xie, Dean Kelk, Robert D. Henderson, Llion A. Roberts, Frederik J. Steyn, Shyuan T. Ngo, Alberto Ferri, Jeff S. Coombes, Fleur C. Garton, and Tesfaye Wolde Tefera
- Subjects
chemistry.chemical_classification ,0303 health sciences ,medicine.medical_specialty ,Fatty acid ,Skeletal muscle ,Metabolism ,medicine.disease ,03 medical and health sciences ,Metabolic pathway ,0302 clinical medicine ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Internal medicine ,medicine ,Glycolysis ,Amyotrophic lateral sclerosis ,Flux (metabolism) ,Beta oxidation ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Amyotrophic lateral sclerosis (ALS) is characterized by the degeneration of upper and lower motor neurons, yet an increasing number of studies in both mouse models and patients with ALS suggest that altered metabolic homeostasis is a feature of disease. Pre-clinical and clinical studies have shown that modulation of energy balance can be beneficial in ALS. However, our capacity to target specific metabolic pathways or mechanisms requires detailed understanding of metabolic dysregulation in ALS. Here, using the SOD1G93Amouse model of ALS, we demonstrate that an increase in whole-body metabolism occurs at a time when glycolytic muscle exhibits an increased dependence on fatty acid oxidation. Using myotubes derived from muscle of ALS patients, we also show that increased dependence on fatty acid oxidation is associated with increased whole-body energy expenditure. In the present study, increased fatty acid oxidation was associated with slower disease progression. However, we observed considerable heterogeneity in whole-body metabolism and fuel oxidation profiles across our patient cohort. Thus, future studies that decipher specific metabolic changes at an individual patient level are essential for the development of treatments that aim to target metabolic pathways in ALS.
- Published
- 2020
- Full Text
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44. Skeletal-Muscle Metabolic Reprogramming in ALS-SOD1G93A Mice Predates Disease Onset and Is A Promising Therapeutic Target
- Author
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Roberto Coccurello, Fabio Giannini, Constantin Heil, Jean Philippe Loeffler, Stefania Battistini, Illari Salvatori, Marco Rosina, Nila Volpi, Daisy Proietti, Silvia Scaricamazza, Luca Madaro, Giacomo Giacovazzo, Elisabetta Ferraro, Simona Rossi, Frederik J. Steyn, Shyuan T. Ngo, Alberto Ferri, Cristiana Valle, Cyril Quessada, Frédérique René, Fondazione Santa Lucia [IRCCS], Clinical and Behavioral Neurology [IRCCS Santa Lucia], Università degli Studi di Roma Tor Vergata [Roma], Mécanismes Centraux et Périphériques de la Neurodégénérescence, Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Institute of Translational Pharmacology - Istituto di Farmacologia Traslazionale [Roma] (IFT), Consiglio Nazionale delle Ricerche [Roma] (CNR), Università degli Studi di Siena = University of Siena (UNISI), University of Southern Queensland (USQ), University of Pisa - Università di Pisa, Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome] (UNIROMA), Dieterle, Stéphane, and Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome]
- Subjects
0301 basic medicine ,medicine.medical_specialty ,[SDV]Life Sciences [q-bio] ,Ranolazine ,02 engineering and technology ,Article ,03 medical and health sciences ,Cellular neuroscience ,Internal medicine ,medicine ,lcsh:Science ,Muscle Denervation ,Multidisciplinary ,business.industry ,Skeletal muscle ,Drugs ,cellular neuroscience ,drugs ,molecular neuroscience ,021001 nanoscience & nanotechnology ,Spinal cord ,3. Good health ,[SDV] Life Sciences [q-bio] ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,Cerebral cortex ,Cellular Neuroscience ,Hypermetabolism ,lcsh:Q ,Brainstem ,Molecular Neuroscience ,0210 nano-technology ,business ,medicine.drug - Abstract
Summary Patients with ALS show, in addition to the loss of motor neurons in the spinal cord, brainstem, and cerebral cortex, an abnormal depletion of energy stores alongside hypermetabolism. In this study, we show that bioenergetic defects and muscle remodeling occur in skeletal muscle of the SOD1G93A mouse model of ALS mice prior to disease onset and before the activation of muscle denervation markers, respectively. These changes in muscle physiology were followed by an increase in energy expenditure unrelated to physical activity. Finally, chronic treatment of SOD1G93A mice with Ranolazine, an FDA-approved inhibitor of fatty acid β-oxidation, led to a decrease in energy expenditure in symptomatic SOD1G93A mice, and this occurred in parallel with a robust, albeit temporary, recovery of the pathological phenotype., Graphical Abstract, Highlights • Metabolic switch use occurs early in the skeletal muscle of SOD1G93A mice • Mitochondrial impairment precedes locomotor deficits and evokes catabolic pathways • Sarcolipin upregulation in presymptomatic SOD1G93A mice precedes hypermetabolism • Pharmacological modulation of hypermetabolism improves locomotor performance, Drugs; Molecular Neuroscience; Cellular Neuroscience
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- 2020
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45. Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment
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Zewen K. Tuong, Renee Gloury, Graham R. Leggatt, Takumi Kobayashi, Valentine Murigneux, Maher K. Gandhi, Rui Li, Axel Kallies, Karolina Bednarska, Stephen R. Mattarollo, Joshua Tay, Shyuan T. Ngo, Gabrielle T. Belz, Hui Jiang, Michelle M. Hill, Pui Yeng Lam, and Nicolas Jacquelot
- Subjects
Immunology ,Cell ,Peroxisome proliferator-activated receptor ,Mice, Transgenic ,Biology ,Biochemistry ,Interferon-gamma ,Mice ,Interferon ,medicine ,Tumor Microenvironment ,Animals ,Humans ,Interferon gamma ,Receptor ,chemistry.chemical_classification ,Membrane Potential, Mitochondrial ,Tumor microenvironment ,Lipid metabolism ,Cell Biology ,Hematology ,Lipid Metabolism ,Neoplasm Proteins ,Killer Cells, Natural ,PPAR gamma ,medicine.anatomical_structure ,chemistry ,Apoptosis ,Cancer research ,Lymphoma, Large B-Cell, Diffuse ,medicine.drug - Abstract
Natural killer (NK) cells play critical roles in protection against hematological malignancies but can acquire a dysfunctional state, which limits antitumor immunity. However, the underlying reasons for this impaired NK cell function remain to be uncovered. We found that NK cells in aggressive B-cell lymphoma underwent substantial transcriptional reprogramming associated with increased lipid metabolism, including elevated expression of the transcriptional regulator peroxisome activator receptor-γ (PPAR-γ). Exposure to fatty acids in the lymphoma environment potently suppressed NK cell effector response and cellular metabolism. NK cells from both diffuse large B-cell lymphoma patients and Eµ-myc B-cell lymphoma-bearing mice displayed reduced interferon-γ (IFN-γ) production. Activation of PPAR-γ partially restored mitochondrial membrane potential and IFN-γ production. Overall, our data indicate that increased lipid metabolism, while impairing their function, is a functional adaptation of NK cells to the fatty-acid rich lymphoma environment.
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- 2020
46. Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis
- Author
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Anna A. E. Vinkhuyzen, Frederik J. Steyn, Beben Benyamin, Dominic B. Rowe, Tian Lin, Jan H. Veldink, Kelly L. Williams, Ian P. Blair, Merrilee Needham, Roger Pamphlett, Shyuan T. Ngo, Paul J. Hop, Anna Freydenzon, Allan F. McRae, Anjali K. Henders, Marta F. Nabais, Perminder S. Sachdev, Robert D. Henderson, Eilis Hannon, Futao Zhang, Naomi R. Wray, Pamela A. McCombe, Restuadi Restuadi, Matthew A. Brown, Fleur C. Garton, Nigel G. Laing, Peter M. Visscher, Jonathan Mill, Leanne Wallace, Matthew R. Robinson, Jacob Gratten, Garth A. Nicholson, Jian Yang, Susan Mathers, Karen A. Mather, Ramona A. J. Zwamborn, Costanza L. Vallerga, Nabais, Marta F, Lin, Tian, Benyamin, Beben, Williams, Kelly L, and Wray, Naomi R
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0301 basic medicine ,amyotrophic lateral sclerosis ,medicine.medical_specialty ,lcsh:QH426-470 ,lcsh:Medicine ,Predictive markers ,Gastroenterology ,Article ,03 medical and health sciences ,0302 clinical medicine ,single nucleotide polymorphism ,Internal medicine ,Genetics ,Medicine ,Amyotrophic lateral sclerosis ,Molecular Biology ,Genetics (clinical) ,DNA methylation ,business.industry ,lcsh:R ,Confounding ,Area under the curve ,Methylation ,cohort analysis ,medicine.disease ,lcsh:Genetics ,030104 developmental biology ,Out of sample ,Cohort ,business ,030217 neurology & neurosurgery - Abstract
We conducted DNA methylation association analyses using Illumina 450K data from whole blood for an Australian amyotrophic lateral sclerosis (ALS) case–control cohort (782 cases and 613 controls). Analyses used mixed linear models as implemented in the OSCA software. We found a significantly higher proportion of neutrophils in cases compared to controls which replicated in an independent cohort from the Netherlands (1159 cases and 637 controls). The OSCA MOMENT linear mixed model has been shown in simulations to best account for confounders. When combined in a methylation profile score, the 25 most-associated probes identified by MOMENT significantly classified case–control status in the Netherlands sample (area under the curve, AUC = 0.65, CI95% = [0.62–0.68], p = 8.3 × 10−22). The maximum AUC achieved was 0.69 (CI95% = [0.66–0.71], p = 4.3 × 10−34) when cell-type proportion was included in the predictor.
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- 2020
47. Monocytes and neutrophils are associated with clinical features in amyotrophic lateral sclerosis
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Kathryn A Thorpe, Frederik J. Steyn, Pamela A. McCombe, Susan Heggie, Shyuan T. Ngo, Robert D. Henderson, Raquel B McGill, Marc J. Ruitenberg, and Trent M. Woodruff
- Subjects
0301 basic medicine ,amyotrophic lateral sclerosis ,Myeloid ,business.industry ,bulbar and respiratory ,Monocyte ,General Engineering ,neutrophil ,Disease ,CD16 ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Immune system ,Severity of illness ,Immunology ,monocyte ,medicine ,Respiratory function ,Original Article ,Amyotrophic lateral sclerosis ,business ,030217 neurology & neurosurgery - Abstract
Immunity has emerged as a key player in neurodegenerative diseases such as amyotrophic lateral sclerosis, with recent studies documenting aberrant immune changes in patients and animal models. A challenging aspect of amyotrophic lateral sclerosis research is the heterogeneous nature of the disease. In this study, we investigate the associations between peripheral blood myeloid cell populations and clinical features characteristic of amyotrophic lateral sclerosis. Peripheral blood leukocytes from 23 healthy controls and 48 patients with amyotrophic lateral sclerosis were analysed to measure myeloid cell alterations. The proportion of monocytes (classical, intermediates and non-classical subpopulations) and neutrophils, as well as the expression of select surface markers, were quantitated using flow cytometry. Given the heterogeneous nature of amyotrophic lateral sclerosis, multivariable linear analyses were performed to investigate associations between patients’ myeloid profile and clinical features, such as the Revised Amyotrophic Lateral Sclerosis Functional Rating Scale, bulbar subscore of the Revised Amyotrophic Lateral Sclerosis Functional Rating Scale, change in Revised Amyotrophic Lateral Sclerosis Functional Rating Scale over disease duration and respiratory function. We demonstrate a shift in monocyte subpopulations in patients with amyotrophic lateral sclerosis, with the ratio of classical to non-classical monocytes increased compared with healthy controls. In line with this, patients with greater disease severity, as determined by a lower Revised Amyotrophic Lateral Sclerosis Functional Rating Scale score, had reduced non-classical monocytes. Interestingly, patients with greater bulbar involvement had a reduction in the proportions of classical, intermediate and non-classical monocyte populations. We also revealed several notable associations between myeloid marker expression and clinical features in amyotrophic lateral sclerosis. CD16 expression on neutrophils was increased in patients with greater disease severity and a faster rate of disease progression, whereas HLA-DR expression on all monocyte populations was elevated in patients with greater respiratory impairment. This study demonstrates that patients with amyotrophic lateral sclerosis with distinct clinical features have differential myeloid cell signatures. Identified cell populations and markers may be candidates for targeted mechanistic studies and immunomodulation therapies in amyotrophic lateral sclerosis., Monocyte and neutrophil frequencies and their expression markers were associated with bulbar symptoms, disease severity, rate of disease progression and respiratory impairment in patients with amyotrophic lateral sclerosis. Our study reveals that aberrant peripheral immunity is related to amyotrophic lateral sclerosis patient phenotype and supports the need for tailored therapies to modify the immune profile., Graphical Abstract
- Published
- 2020
48. Progression and survival of patients with motor neuron disease relative to their fecal microbiota
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Shyuan T. Ngo, Restuadi Restuadi, McCrae, Allan F., Van Eijk, Ruben P., Garton, Fleur, Henderson, Robert D., Wray, Naomi R., McCombe, Pamela A., and Steyn, Frederik J.
- Abstract
Gut microbiota studies have been well-investigated for neurodegenerative diseases such as Alzheimer’s and Parkinson’s disease, however, fewer studies have comprehensively examined the gut microbiome in Motor Neuron Disease (MND), with none examining its impact on disease prognosis. Here, we investigate MND prognosis and the fecal microbiota, using 16S rRNA case–control data from 100 individuals with extensive medical histories and metabolic measurements. We contrast the composition and diversity of fecal microbiome signatures from 49 MND and 51 healthy controls by combining current gold-standard 16S microbiome pipelines. Using stringent quality control thresholds, we conducted qualitative assessment approaches including; direct comparison of taxa, PICRUSt2 predicted metagenomics, Shannon and Chao1-index and Firmicutes/Bacteroidetes ratio. We show that the fecal microbiome of patients with MND is not significantly different from that of healthy controls that were matched by age, sex, and BMI, however there are distinct differences in Beta-diversity in some patients with MND. Weight, BMI, and metabolic and clinical features of disease in patients with MND were not related to the composition of their fecal microbiome, however, we observe a greater risk for earlier death in patients with MND with increased richness and diversity of the microbiome, and in those with greater Firmicutes to Bacteroidetes ratio. This was independent of anthropometric, metabolic, or clinical features of disease, and warrants support for further gut microbiota studies in MND. Given the disease heterogeneity in MND, and complexity of the gut microbiota, large studies are necessary to determine the detailed role of the gut microbiota and MND prognosis.
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- 2020
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49. Functional Characterisation of a GWAS Risk Locus Identifies GPX3 as a Lead Candidate Gene in ALS
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Michael J. Thompson, Noah Zaitlen, Edor Kabashi, Naomi R. Wray, Fei-Fei Cheng, Matthew C. Kiernan, Leanne Wallace, Shyuan T. Ngo, David Schultz, Robert D. Henderson, Susan Mathers, Merrilee Needham, Jean Giacomotto, Allan F. McRae, Christopher R. Bye, Leonard H. van den Berg, Bradley J. Turner, Anjali K. Henders, Restuadi Restuadi, Marta F. Nabais, Wouter van Rheenen, Frederik J. Steyn, Laura Ziser, Jan H. Veldink, Alexander Gusev, Ting Qi, Roel A. Ophoff, Pamela A. McCombe, and Fleur C. Garton
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Candidate gene ,Expression quantitative trait loci ,medicine ,Genome-wide association study ,Locus (genetics) ,Disease ,Computational biology ,Amyotrophic lateral sclerosis ,Biology ,medicine.disease ,Gene ,Genetic association - Abstract
Amyotrophic lateral sclerosis (ALS) is a complex late-onset, neurodegenerative disease with a genetic contribution to disease liability. Genome-wide association studies have identified eleven risk loci to date, including the TNIP1/GPX3 locus on chromosome five. Current association analysis data alone cannot determine the most plausible risk gene in this locus. Here, we undertake a comprehensive suite of studies to provide objective evidence to support or reject the relevance of these two genes. We use bioinformatic integration of genetic association data with omics reference data sets, in-vitro and in-vivo approaches to narrow down the likely candidate. TNIP1 and GPX3 are implicated in-silico (rs10463311 is an eQTL for these two genes). In-vivo expression analyses in ALS cases identify that GPX3 expression decreases with increased disability and rate of progression. Validation in-vivo, indicate GPX3 loss-of-function causes motor deficits in zebrafish embryos. Taken together, these results support GPX3 as being the ALS risk gene in this locus which has implications for understanding disease mechanisms and targeted therapeutic approaches.
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- 2020
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50. Dysregulation of microRNA biogenesis machinery and microRNA/RNA ratio in skeletal muscle of amyotrophic lateral sclerosis mice
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Justin J. Yerbury, Lobna Ghobrial, Séverine Lamon, Roger S. Chung, Evelyn Zacharewicz, Shyuan T. Ngo, and Aaron P. Russell
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0301 basic medicine ,Physiology ,Skeletal muscle ,RNA ,RNA-binding protein ,Biology ,Non-coding RNA ,medicine.disease ,Cell biology ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,030104 developmental biology ,medicine.anatomical_structure ,Tibialis anterior muscle ,Physiology (medical) ,microRNA ,medicine ,Neurology (clinical) ,Amyotrophic lateral sclerosis ,Drosha - Abstract
The pathology of amyotrophic lateral sclerosis (ALS) is associated with impaired RNA processing and miRNA dysregulation. Here we investigate the regulation of the members of the miRNA biogenesis pathways and total miRNA levels at different stages of the disease. Muscle, brain and spinal cord tissue were obtained from pre-symptomatic, symptomatic and end-stage SOD1G93A mice. miRNA and transcript levels were measured by qPCR. As the diseases progresses, several genes involved in miRNA biogenesis as well as the miRNA/total RNA ratio increased in the tibialis anterior muscle, but not in the soleus or in neural tissue. We propose that a dysregulation in the miRNA/total RNA ratio in the tibialis anterior muscle from SOD1G93A mice reflects a pathological increase in miRNA biogenesis machinery. Alterations in the miRNA/total RNA ratio influence the levels of reference ncRNAs and may therefore potentially compromise the accuracy of commonly used miRNA normalization strategies. This article is protected by copyright. All rights reserved.
- Published
- 2017
- Full Text
- View/download PDF
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