78 results on '"Siddhartha Saha"'
Search Results
2. Adverse outcomes in patients hospitalized with pneumonia at age 60 or more: A prospective multi-centric hospital-based study in India.
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Suman Kanungo, Uttaran Bhattacharjee, Aslesh O Prabhakaran, Rakesh Kumar, Prabu Rajkumar, Sumit Dutt Bhardwaj, Alok Kumar Chakrabarti, Girish Kumar C P, Varsha Potdar, Byomkesh Manna, Ritvik Amarchand, Avinash Choudekar, Giridara Gopal, Krishna Sarda, Kathryn E Lafond, Eduardo Azziz-Baumgartner, Siddhartha Saha, Lalit Dar, and Anand Krishnan
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Medicine ,Science - Abstract
BackgroundLimited data exists regarding risk factors for adverse outcomes in older adults hospitalized with Community-Acquired Pneumonia (CAP) in low- and middle-income countries such as India. This multisite study aimed to assess outcomes and associated risk factors among adults aged ≥60 years hospitalized with pneumonia.MethodsBetween December 2018 and March 2020, we enrolled ≥60-year-old adults admitted within 48 hours for CAP treatment across 16 public and private facilities in four sites. Clinical data and nasal/oropharyngeal specimens were collected by trained nurses and tested for influenza, respiratory syncytial virus (RSV), and other respiratory viruses (ORV) using the qPCR. Participants were evaluated regularly until discharge, as well as on the 7th and 30th days post-discharge. Outcomes included ICU admission and in-hospital or 30-day post-discharge mortality. A hierarchical framework for multivariable logistic regression and Cox proportional hazard models identified risk factors (e.g., demographics, clinical features, etiologic agents) associated with critical care or death.FindingsOf 1,090 CAP patients, the median age was 69 years; 38.4% were female. Influenza viruses were detected in 12.3%, RSV in 2.2%, and ORV in 6.3% of participants. Critical care was required for 39.4%, with 9.9% in-hospital mortality and 5% 30-day post-discharge mortality. Only 41% of influenza CAP patients received antiviral treatment. Admission factors independently associated with ICU admission included respiratory rate >30/min, blood urea nitrogen>19mg/dl, altered sensorium, anemia, oxygen saturation ConclusionHigh ICU admission and 30-day mortality rates were observed among older adults with pneumonia, with a significant proportion linked to influenza and RSV infections. Comprehensive guidelines for CAP prevention and management in older adults are needed, especially with the co-circulation of SARS-CoV-2.
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- 2024
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3. Cost of acute respiratory illness episode and its determinants among community-dwelling older adults: a four-site cohort study from India
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Prabu Rajkumar, Lalit Dar, Ritvik Amarchand, Aslesh Ottapura Prabhakaran, Suman Kanungo, Sumit Dutt Bhardwaj, Avinash Choudekar, Varsha Potdar, Alok Kumar Chakrabarti, Byomkesh Manna, Kathryn E Lafond, Eduardo Azziz-Baumgartner, Siddhartha Saha, Kusum Shekhawat, Ismael R Ortega-Sanchez, Giridara Gopal, Girish Kumar Chethrapilly Purushothaman, Radhika Gharpure, and Uttaran Bhattacharjee
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Public aspects of medicine ,RA1-1270 - Abstract
Introduction Advocacy for the provision of public health resources, including vaccine for the prevention of acute respiratory illnesses (ARIs) among older adults in India, needs evidence on costs and benefits. Using a cohort of community-dwelling adults aged 60 years and older in India, we estimated the cost of ARI episode and its determinants.Methods We enrolled 6016 participants in Ballabgarh, Chennai, Kolkata and Pune from July 2018 to March 2020. They were followed up weekly to identify ARI and classified them as acute upper respiratory illness (AURI) or pneumonia based on clinical features based on British Thoracic Society guidelines. All pneumonia and 20% of AURI cases were asked about the cost incurred on medical consultation, investigation, medications, transportation, food and lodging. The cost of services at public facilities was supplemented by WHO-Choosing Interventions that are Cost-Effective(CHOICE) estimates for 2019. Indirect costs incurred by the affected participant and their caregivers were estimated using human capital approach. We used generalised linear model with log link and gamma family to identify the average marginal effect of key determinants of the total cost of ARI.Results We included 2648 AURI and 1081 pneumonia episodes. Only 47% (range 36%–60%) of the participants with pneumonia sought care. The mean cost of AURI episode was US$13.9, while that of pneumonia episode was US$25.6, with indirect costs comprising three-fourths of the total. The cost was higher among older men by US$3.4 (95% CI: 1.4 to 5.3), those with comorbidities by US$4.3 (95% CI: 2.8 to 5.7) and those who sought care by US$17.2 (95% CI: 15.1 to 19.2) but not by influenza status. The mean per capita annual cost of respiratory illness was US$29.5.Conclusion Given the high community disease and cost burden of ARI, intensifying public health interventions to prevent and mitigate ARI among this fast-growing older adult population in India is warranted.
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- 2023
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4. Leveraging International Influenza Surveillance Systems and Programs during the COVID-19 Pandemic
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Perrine Marcenac, Margaret McCarron, William Davis, Ledor S. Igboh, Joshua A. Mott, Kathryn E. Lafond, Weigong Zhou, Marjorie Sorrells, Myrna D. Charles, Philip Gould, Carmen Sofia Arriola, Vic Veguilla, Erica Guthrie, Vivien G. Dugan, Rebecca Kondor, Eric Gogstad, Timothy M. Uyeki, Sonja J. Olsen, Gideon O. Emukule, Siddhartha Saha, Carolyn Greene, Joseph S. Bresee, John Barnes, David E. Wentworth, Alicia M. Fry, Daniel B. Jernigan, and Eduardo Azziz-Baumgartner
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influenza ,COVID-19 ,coronavirus disease ,SARS-CoV-2 ,severe acute respiratory syndrome coronavirus 2 ,viruses ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
A network of global respiratory disease surveillance systems and partnerships has been built over decades as a direct response to the persistent threat of seasonal, zoonotic, and pandemic influenza. These efforts have been spearheaded by the World Health Organization, country ministries of health, the US Centers for Disease Control and Prevention, nongovernmental organizations, academic groups, and others. During the COVID-19 pandemic, the US Centers for Disease Control and Prevention worked closely with ministries of health in partner countries and the World Health Organization to leverage influenza surveillance systems and programs to respond to SARS-CoV-2 transmission. Countries used existing surveillance systems for severe acute respiratory infection and influenza-like illness, respiratory virus laboratory resources, pandemic influenza preparedness plans, and ongoing population-based influenza studies to track, study, and respond to SARS-CoV-2 infections. The incorporation of COVID-19 surveillance into existing influenza sentinel surveillance systems can support continued global surveillance for respiratory viruses with pandemic potential.
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- 2022
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5. Gerbode defect – Percutaneous closure of three cases and a brief review of literature
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Mahua Roy, Debasree Gangopadhyay, Siddhartha Saha, Sushil Sukla, and Pooja Sinha
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gerbode defect ,percutenous closure ,open heart surgery ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Gerbode defect is very rare cardiac abnormality accounting for
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- 2022
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6. Genetic evaluation of Frieswal cattle for first lactation milk yield from smallholder dairy production systems in Kerala, India
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A K DAS, ABHIJIT MITRA, RAVINDER KUMAR, UMESH SINGH, SUSHIL KUMAR, T V RAJA, RANI ALEX, K ANIL KUMAR, A S SIROHI, and SIDDHARTHA SAHA
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Frieswal ,First lactation milk yield ,Field progeny testing ,Genetic evaluation ,Animal culture ,SF1-1100 - Abstract
The present investigation was undertaken to determine the genetic worth of Frieswal (62.5% HF × 37.5% Sahiwal) young bulls through progeny testing under field conditions in Kerala state, India. A total of 65 Frieswal bulls were evaluated based on 1037 first lactation records of their daughters calved over a period of 15 years from 1995 to 2010 were used for the study. The overall average breeding value for the first lactation 305-days milk yield was estimated as 2229.19±50.91 kg with a range of 2193.74±66.59 to 2280.62±66.59 kg. Out of 65 bulls inducted in 7 different sets, 33 bulls (50.7%) had breeding values higher than the herd average (2229.19 kg). The number of daughters per bull varied from 7 to 51 whereas the average number of daughters per bull was 16. The genetic superiority and percentage genetic superiority of the top 25 bulls (38.46%) over population ranged from 6.26 to 51.43 and 0.28 to 2.30, respectively. The least squares analysis of variance revealed that the year of calving had a significant effect on the first lactation milk yield of daughters. The increasing trend of first lactation milk yield over year / bull set observed in the present study indicates the successful implementation of large-scale progeny testing programme under field conditions.
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- 2023
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7. What do pregnant women think about influenza disease and vaccination practices in selected countries
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Carmen S. Arriola, Piyarat Suntarattiwong, Fatimah S. Dawood, Giselle Soto, Prabir Das, Danielle R. Hunt, Chalinthorn Sinthuwattanawibool, Kunal Kurhe, Mark G. Thompson, Meredith G. Wesley, Siddhartha Saha, Danielle Hombroek, Tana Brummer, Wanitchaya Kittikraisak, Surasak Kaoiean, Joan Neyra, Candice Romero, Archana Patel, Savita Bhargav, Vaishali Khedikar, Shikha Garg, Joshua A Mott, Oswaldo Gonzales, Santiago Cabrera, Richard Florian, Seema Parvekar, Krissada Tomyabatra, Amber Prakash, and Yeny O. Tinoco
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pregnant women ,influenza ,influenza vaccination ,knowledge ,attitudes ,practices ,Immunologic diseases. Allergy ,RC581-607 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Introduction: We evaluated knowledge, attitudes, and practices (KAP) related to influenza and influenza vaccination among pregnant women in three selected countries. Methods: During 2017, pregnant women seeking antenatal care at hospitals at participating sites were enrolled. We described characteristics and responses to KAP questions. We also evaluated predictors associated with influenza vaccination during pregnancy at sites with substantial influenza vaccine uptake by multivariable logistic regression. Results: Overall, 4,648 pregnant women completed the survey. There were substantial differences among the three survey populations; only 8% of the women in Nagpur had heard of influenza, compared to 90% in Lima and 96% in Bangkok (p-value
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- 2021
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8. Multisite surveillance for influenza and other respiratory viruses in India: 2016-2018.
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Mandeep Chadha, Aslesh Ottapura Prabhakaran, Manohar Lal Choudhary, Dipankar Biswas, Parvaiz Koul, K Kaveri, Lalit Dar, Chawla Sarkar Mamta, Santosh Jadhav, Sumit Dutt Bhardwaj, Kayla Laserson, Siddhartha Saha, and Varsha Potdar
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Public aspects of medicine ,RA1-1270 - Abstract
There is limited surveillance and laboratory capacity for non-influenza respiratory viruses in India. We leveraged the influenza sentinel surveillance of India to detect other respiratory viruses among patients with acute respiratory infection. Six centers representing different geographic areas of India weekly enrolled a convenience sample of 5-10 patients with acute respiratory infection (ARI) and severe acute respiratory infection (SARI) between September 2016-December 2018. Staff collected nasal and throat specimens in viral transport medium and tested for influenza virus, respiratory syncytial virus (RSV), parainfluenza virus (PIV), human meta-pneumovirus (HMPV), adenovirus (AdV) and human rhinovirus (HRV) by reverse transcription polymerase chain reaction (RT-PCR). Phylogenetic analysis of influenza and RSV was done. We enrolled 16,338 including 8,947 ARI and 7,391 SARI cases during the study period. Median age was 14.6 years (IQR:4-32) in ARI cases and 13 years (IQR:1.3-55) in SARI cases. We detected respiratory viruses in 33.3% (2,981) of ARI and 33.4% (2,468) of SARI cases. Multiple viruses were co-detected in 2.8% (458/16,338) specimens. Among ARI cases influenza (15.4%) were the most frequently detected viruses followed by HRV (6.2%), RSV (5%), HMPV (3.4%), PIV (3.3%) and AdV (3.1%),. Similarly among SARI cases, influenza (12.7%) were most frequently detected followed by RSV (8.2%), HRV (6.1%), PIV (4%), HMPV (2.6%) and AdV (2.1%). Our study demonstrated the feasibility of expanding influenza surveillance systems for surveillance of other respiratory viruses in India. Influenza was the most detected virus among ARI and SARI cases.
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- 2022
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9. Social contact patterns and implications for infectious disease transmission – a systematic review and meta-analysis of contact surveys
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Andria Mousa, Peter Winskill, Oliver John Watson, Oliver Ratmann, Mélodie Monod, Marco Ajelli, Aldiouma Diallo, Peter J Dodd, Carlos G Grijalva, Moses Chapa Kiti, Anand Krishnan, Rakesh Kumar, Supriya Kumar, Kin O Kwok, Claudio F Lanata, Olivier Le Polain de Waroux, Kathy Leung, Wiriya Mahikul, Alessia Melegaro, Carl D Morrow, Joël Mossong, Eleanor FG Neal, D James Nokes, Wirichada Pan-ngum, Gail E Potter, Fiona M Russell, Siddhartha Saha, Jonathan D Sugimoto, Wan In Wei, Robin R Wood, Joseph Wu, Juanjuan Zhang, Patrick Walker, and Charles Whittaker
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social contact patterns ,pathogen transmission ,contact surveys ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Background: Transmission of respiratory pathogens such as SARS-CoV-2 depends on patterns of contact and mixing across populations. Understanding this is crucial to predict pathogen spread and the effectiveness of control efforts. Most analyses of contact patterns to date have focused on high-income settings. Methods: Here, we conduct a systematic review and individual-participant meta-analysis of surveys carried out in low- and middle-income countries and compare patterns of contact in these settings to surveys previously carried out in high-income countries. Using individual-level data from 28,503 participants and 413,069 contacts across 27 surveys, we explored how contact characteristics (number, location, duration, and whether physical) vary across income settings. Results: Contact rates declined with age in high- and upper-middle-income settings, but not in low-income settings, where adults aged 65+ made similar numbers of contacts as younger individuals and mixed with all age groups. Across all settings, increasing household size was a key determinant of contact frequency and characteristics, with low-income settings characterised by the largest, most intergenerational households. A higher proportion of contacts were made at home in low-income settings, and work/school contacts were more frequent in high-income strata. We also observed contrasting effects of gender across income strata on the frequency, duration, and type of contacts individuals made. Conclusions: These differences in contact patterns between settings have material consequences for both spread of respiratory pathogens and the effectiveness of different non-pharmaceutical interventions. Funding: This work is primarily being funded by joint Centre funding from the UK Medical Research Council and DFID (MR/R015600/1).
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- 2021
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10. Cohort profile: Indian Network of Population-Based Surveillance Platforms for Influenza and Other Respiratory Viruses among the Elderly (INSPIRE)
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Rakesh Kumar, Anand Krishnan, Cp Girish Kumar, Prabu Rajkumar, Lalit Dar, Ritvik Amarchand, Aslesh Ottapura Prabhakaran, Suman Kanungo, Sumit Dutt Bhardwaj, Avinash Choudekar, Varsha Potdar, Alok Kumar Chakrabarti, Giridara Gopal Parameswaran, Shivram Dhakad, Byomkesh Manna, Ashish Choudhary, Kathryn E Lafond, Eduardo Azziz-Baumgartner, and Siddhartha Saha
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Medicine - Abstract
Purpose We describe here a multicentric community-dwelling cohort of older adults (>60 years of age) established to estimate incidence, study risk factors, healthcare utilisation and economic burden associated with influenza and respiratory syncytial virus (RSV) in India.Participants The four sites of this cohort are in northern (Ballabgarh), southern (Chennai), eastern (Kolkata) and western (Pune) parts of India. We enrolled 5336 participants across 4220 households and began surveillance in July 2018 for viral respiratory infections with additional participants enrolled annually. Trained field workers collected data about individual-level and household-level risk factors at enrolment and quarterly assessed frailty and grip strength. Trained nurses surveilled weekly to identify acute respiratory infections (ARI) and clinically assessed individuals to diagnose acute lower respiratory infection (ALRI) as per protocol. Nasal and oropharyngeal swabs are collected from all ALRI cases and one-fifth of the other ARI cases for laboratory testing. Cost data of the episode are collected using the WHO approach for estimating the economic burden of seasonal influenza. Handheld tablets with Open Data Kit platform were used for data collection.Findings to date The attrition of 352 participants due to migration and deaths was offset by enrolling 680 new entrants in the second year. All four sites reported negligible influenza vaccination uptake (0.1%–0.4%), low health insurance coverage (0.4%–22%) and high tobacco use (19%–52%). Ballabgarh had the highest proportion (54.4%) of households in the richest wealth quintile, but reported high solid fuel use (92%). Frailty levels were highest in Kolkata (11.3%) and lowest in Pune (6.8%). The Chennai cohort had highest self-reported morbidity (90.1%).Future plans The findings of this cohort will be used to inform prioritisation of strategies for influenza and RSV control for older adults in India. We also plan to conduct epidemiological studies of SARS-CoV-2 using this platform.
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- 2021
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11. Efficacy of live attenuated and inactivated influenza vaccines among children in rural India: A 2-year, randomized, triple-blind, placebo-controlled trial.
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Anand Krishnan, Lalit Dar, Siddhartha Saha, Venkatesh Vinayak Narayan, Rakesh Kumar, Ramesh Kumar, Ritvik Amarchand, Shivram Dhakad, Reshmi Chokker, Avinash Choudekar, Giridara Gopal, Aashish Choudhary, Varsha Potdar, Mandeep Chadha, Kathryn E Lafond, Stephen Lindstrom, Marc-Alain Widdowson, and Seema Jain
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Medicine - Abstract
BackgroundInfluenza is a cause of febrile acute respiratory infection (FARI) in India; however, few influenza vaccine trials have been conducted in India. We assessed absolute and relative efficacy of live attenuated influenza vaccine (LAIV) and inactivated influenza vaccine (IIV) among children aged 2 to 10 years in rural India through a randomized, triple-blind, placebo-controlled trial conducted over 2 years.Methods and findingsIn June 2015, children were randomly allocated to LAIV, IIV, intranasal placebo, or inactivated polio vaccine (IPV) in a 2:2:1:1 ratio. In June 2016, vaccination was repeated per original allocation. Overall, 3,041 children received LAIV (n = 1,015), IIV (n = 1,010), nasal placebo (n = 507), or IPV (n = 509). Mean age of children was 6.5 years with 20% aged 9 to 10 years. Through weekly home visits, nasal and throat swabs were collected from children with FARI and tested for influenza virus by polymerase chain reaction. The primary outcome was laboratory-confirmed influenza-associated FARI; vaccine efficacy (VE) was calculated using modified intention-to-treat (mITT) analysis by Cox proportional hazards model (PH) for each year. In Year 1, VE was 40.0% (95% confidence interval (CI) 25.2 to 51.9) for LAIV and 59.0% (95% CI 47.8 to 67.9) for IIV compared with controls; relative efficacy of LAIV compared with IIV was -46.2% (95% CI -88.9 to -13.1). In Year 2, VE was 51.9% (95% CI 42.0 to 60.1) for LAIV and 49.9% (95% CI 39.2 to 58.7) for IIV; relative efficacy of LAIV compared with IIV was 4.2% (95% CI -19.9 to 23.5). No serious adverse vaccine-attributable events were reported. Study limitations include differing dosage requirements for children between nasal and injectable vaccines (single dose of LAIV versus 2 doses of IIV) in Year 1 and the fact that immunogenicity studies were not conducted.ConclusionsIn this study, we found that LAIV and IIV vaccines were safe and moderately efficacious against influenza virus infection among Indian children.Trial registrationClinical Trials Registry of India CTRI/2015/06/005902.
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- 2021
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12. Global burden of influenza-associated lower respiratory tract infections and hospitalizations among adults: A systematic review and meta-analysis.
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Kathryn E Lafond, Rachael M Porter, Melissa J Whaley, Zhou Suizan, Zhang Ran, Mohammad Abdul Aleem, Binay Thapa, Borann Sar, Viviana Sotomayor Proschle, Zhibin Peng, Luzhao Feng, Daouda Coulibaly, Edith Nkwembe, Alfredo Olmedo, William Ampofo, Siddhartha Saha, Mandeep Chadha, Amalya Mangiri, Vivi Setiawaty, Sami Sheikh Ali, Sandra S Chaves, Dinagul Otorbaeva, Onechanh Keosavanh, Majd Saleh, Antonia Ho, Burmaa Alexander, Hicham Oumzil, Kedar Prasad Baral, Q Sue Huang, Adedeji A Adebayo, Idris Al-Abaidani, Marta von Horoch, Cheryl Cohen, Stefano Tempia, Vida Mmbaga, Malinee Chittaganpitch, Mariana Casal, Duc Anh Dang, Paula Couto, Harish Nair, Joseph S Bresee, Sonja J Olsen, Eduardo Azziz-Baumgartner, J Pekka Nuorti, Marc-Alain Widdowson, and Global Respiratory Hospitalizations–Influenza Proportion Positive (GRIPP) Working Group
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Medicine - Abstract
BackgroundInfluenza illness burden is substantial, particularly among young children, older adults, and those with underlying conditions. Initiatives are underway to develop better global estimates for influenza-associated hospitalizations and deaths. Knowledge gaps remain regarding the role of influenza viruses in severe respiratory disease and hospitalizations among adults, particularly in lower-income settings.Methods and findingsWe aggregated published data from a systematic review and unpublished data from surveillance platforms to generate global meta-analytic estimates for the proportion of acute respiratory hospitalizations associated with influenza viruses among adults. We searched 9 online databases (Medline, Embase, CINAHL, Cochrane Library, Scopus, Global Health, LILACS, WHOLIS, and CNKI; 1 January 1996-31 December 2016) to identify observational studies of influenza-associated hospitalizations in adults, and assessed eligible papers for bias using a simplified Newcastle-Ottawa scale for observational data. We applied meta-analytic proportions to global estimates of lower respiratory infections (LRIs) and hospitalizations from the Global Burden of Disease study in adults ≥20 years and by age groups (20-64 years and ≥65 years) to obtain the number of influenza-associated LRI episodes and hospitalizations for 2016. Data from 63 sources showed that influenza was associated with 14.1% (95% CI 12.1%-16.5%) of acute respiratory hospitalizations among all adults, with no significant differences by age group. The 63 data sources represent published observational studies (n = 28) and unpublished surveillance data (n = 35), from all World Health Organization regions (Africa, n = 8; Americas, n = 11; Eastern Mediterranean, n = 7; Europe, n = 8; Southeast Asia, n = 11; Western Pacific, n = 18). Data quality for published data sources was predominantly moderate or high (75%, n = 56/75). We estimate 32,126,000 (95% CI 20,484,000-46,129,000) influenza-associated LRI episodes and 5,678,000 (95% CI 3,205,000-9,432,000) LRI hospitalizations occur each year among adults. While adults ConclusionsIn this meta-analysis, we estimated that influenza viruses are associated with over 5 million hospitalizations worldwide per year. Inclusion of both published and unpublished findings allowed for increased power to generate stratified estimates, and improved representation from lower-income countries. Together, the available data demonstrate the importance of influenza viruses as a cause of severe disease and hospitalizations in younger and older adults worldwide.
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- 2021
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13. Carriage rates and antimicrobial sensitivity of pneumococci in the upper respiratory tract of children less than ten years old, in a north Indian rural community.
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Sambuddha Kumar, Debjani Ram Purakayastha, Arti Kapil, Siddhartha Saha, Fatimah S Dawood, Bimal Kumar Das, Ritvik Amarchand, Rakesh Kumar, Kathryn E Lafond, Seema Jain, and Anand Krishnan
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Medicine ,Science - Abstract
Pneumococcal carriage studies are important for vaccine introduction and treatment strategies. Pneumococcal carriage rates estimated in this cohort study among children in a rural community of northern India. Between August 2012 and August 2014, trained nurses made weekly home visits to screen enrolled children aged
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- 2021
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14. Challenges in conducting a community-based influenza vaccine trial in a rural community in northern India
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Rakesh Kumar, Ritvik Amarchand, Venkatesh Vinayak Narayan, Siddhartha Saha, Kathryn E. Lafond, Suresh K. Kapoor, Lalit Dar, Seema Jain, and Anand Krishnan
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challenges ,influenza ,low and middle income countries ,vaccine trial ,Immunologic diseases. Allergy ,RC581-607 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Evidence on influenza vaccine effectiveness from low and middle countries (LMICs) is limited due to limited institutional capacities; lack of adequate resources; and lack of interest by ministries of health for influenza vaccine introduction. There are concerns that the highest ethical standards will be compromised during trials in LMICs leading to mistrust of clinical trials. These factors pose regulatory and operational challenges to researchers in these countries. We conducted a community-based vaccine trial to assess the efficacy of live attenuated influenza vaccine and inactivated influenza vaccine in rural north India. Key regulatory challenges included obtaining regulatory approvals, reporting of adverse events, and compensating subjects for trial-related injuries; all of which were required to be completed in a timely fashion. Key operational challenges included obtaining audio-visual consent; maintaining a low attrition rate; and administering vaccines during a narrow time period before the influenza season, and under extreme heat. We overcame these challenges through advanced planning, and sustaining community engagement. We adapted the trial procedures to cope with field conditions by conducting mock vaccine camps; and planned for early morning vaccination to mitigate threats to the cold chain. These lessons may help investigators to confront similar challenges in other LMICs.
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- 2018
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15. Efficacy of inactivated trivalent influenza vaccine in rural India: a 3-year cluster-randomised controlled trial
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Wayne M Sullender, ProfMD, Karen B Fowler, Prof, Vivek Gupta, MD, Anand Krishnan, Debjani Ram Purakayastha, Raghuram Srungaram VLN, PhD, Kathryn E Lafond, MPH, Siddhartha Saha, MD, Francisco S Palomeque, MPH, Paul Gargiullo, PhD, Seema Jain, MD, Renu Lal, PhD, Marc-Alain Widdowson, VetMB, and Shobha Broor, ProfMD
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Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Paediatric vaccination against influenza can result in indirect protection, by reducing transmission to their unvaccinated contacts. We investigated whether influenza vaccination of children would protect them and their household members in a resource-limited setting. Methods: We did a cluster-randomised, blinded, controlled study in three villages in India. Clusters were defined as households (ie, dwellings that shared a courtyard), and children aged 6 months to 10 years were eligible for vaccination as and when they became age-eligible throughout the study. Households were randomly assigned (1:1) by a computer-based system to intramuscular trivalent inactivated influenza vaccine (IIV3) or a control of inactivated poliovirus vaccine (IPV) in the beginning of the study; vaccination occurred once a year for 3 years. The primary efficacy outcome was laboratory-confirmed influenza in a vaccinated child with febrile acute respiratory illness, analysed in the modified intention-to-treat population (ie, children who received at least one dose of vaccine, were under surveillance, and had not an influenza infection within 15 days of last vaccine dose). The secondary outcome for indirect effectiveness (surveillance study) was febrile acute respiratory illness in an unvaccinated household member of a vaccine study participant. Data from each year (year 1: November, 2009, to October, 2010; year 2: October, 2010, to October, 2011; and year 3: October, 2011, to May, 2012) were analysed separately. Safety was analysed among all participants who were vaccinated with at least one dose of the vaccine. This trial is registered with ClinicalTrials.gov, number NCT00934245. Findings: Between Nov 1, 2009, to May 1, 2012, we enrolled 3208 households, of which 1959 had vaccine-eligible children. 1010 households were assigned to IIV3 and 949 households were assigned to IPV. In 3 years, we vaccinated 4345 children (2132 with IIV3 and 2213 with IPV) from 1868 households (968 with IIV3 and 900 with IPV) with 10 813 unvaccinated household contacts. In year 1, influenza virus was detected in 151 (10%) of 1572 IIV3 recipients and 206 (13%) of 1633 of IPV recipients (total IIV3 vaccine efficacy 25·6% [95% CI 6·8–40·6]; p=0·010). In year 2, 105 (6%) of 1705 IIV3 recipients and 182 (10%) of 1814 IPV recipients had influenza (vaccine efficacy 41·0% [24·1–54·1]; p
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- 2019
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16. Strongly interacting spin-orbit coupled Bose-Einstein condensates in one dimension
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Siddhartha Saha, E. J. König, Junhyun Lee, and J. H. Pixley
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Physics ,QC1-999 - Abstract
We theoretically study dilute superfluidity of spin-1 bosons with antiferromagnetic interactions and synthetic spin-orbit coupling (SOC) in a one-dimensional lattice. Employing a combination of density matrix renormalization group and quantum field theoretical techniques we demonstrate the appearance of a robust superfluid spin-liquid phase in which the spin sector of this spinor Bose-Einstein condensate remains quantum disordered even after introducing quadratic Zeeman and helical magnetic fields. Despite remaining disordered, the presence of these symmetry-breaking fields lifts the perfect spin-charge separation and thus the nematic correlators obey power-law behavior. We demonstrate that, at strong coupling, the SOC induces a charge density wave state that is not accessible in the presence of linear and quadratic Zeeman fields alone. In addition, the SOC induces oscillations in the spin and nematic expectation values as well as the bosonic Green's function. These nontrivial effects of an SOC are suppressed under the application of a large quadratic Zeeman field. We discuss how our results could be observed in experiments on ultracold gases of ^{23}Na in an optical lattice.
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- 2020
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17. Estimation of community-level influenza-associated illness in a low resource rural setting in India.
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Siddhartha Saha, Vivek Gupta, Fatimah S Dawood, Shobha Broor, Kathryn E Lafond, Mandeep S Chadha, Sanjay K Rai, and Anand Krishnan
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Medicine ,Science - Abstract
To estimate rates of community-level influenza-like-illness (ILI) and influenza-associated ILI in rural north India.During 2011, we conducted household-based healthcare utilization surveys (HUS) for any acute medical illness (AMI) in preceding 14days among residents of 28villages of Ballabgarh, in north India. Concurrently, we conducted clinic-based surveillance (CBS) in the area for AMI episodes with illness onset ≤3days and collected nasal and throat swabs for influenza virus testing using real-time polymerase chain reaction. Retrospectively, we applied ILI case definition (measured/reported fever and cough) to HUS and CBS data. We attributed 14days of risk-time per person surveyed in HUS and estimated community ILI rate by dividing the number of ILI cases in HUS by total risk-time. We used CBS data on influenza positivity and applied it to HUS-based community ILI rates by age, month, and clinic type, to estimate the community influenza-associated ILI rates.The HUS of 69,369 residents during the year generated risk-time of 3945 person-years (p-y) and identified 150 (5%, 95%CI: 4-6) ILI episodes (38 ILI episodes/1,000 p-y; 95% CI 32-44). Among 1,372 ILI cases enrolled from clinics, 126 (9%; 95% CI 8-11) had laboratory-confirmed influenza (A (H3N2) = 72; B = 54). After adjusting for age, month, and clinic type, overall influenza-associated ILI rate was 4.8/1,000 p-y; rates were highest among children
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- 2018
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18. Differences in Influenza Seasonality by Latitude, Northern India
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Parvaiz A. Koul, Shobha Broor, Siddhartha Saha, John Barnes, Catherine Smith, Michael Shaw, Mandeep Chadha, and Renu B. Lal
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seasonal influenza ,India ,pandemic influenza ,influenza ,viruses ,latitude ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
The seasonality of influenza in the tropics complicates vaccination timing. We investigated influenza seasonality in northern India and found influenza positivity peaked in Srinagar (34.09°N) in January–March but peaked in New Delhi (28.66°N) in July–September. Srinagar should consider influenza vaccination in October–November, but New Delhi should vaccinate in May–June.
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- 2014
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19. Influenza seasonality and vaccination timing in tropical and subtropical areas of southern and south-eastern Asia
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Siddhartha Saha, Mandeep Chadha, Abdullah Al Mamun, Mahmudur Rahman, Katharine Sturm-Ramirez, Malinee Chittaganpitch, Sirima Pattamadilok, Sonja J Olsen, Ondri Dwi Sampurno, Vivi Setiawaty, Krisna Nur Andriana Pangesti, Gina Samaan, Sibounhom Archkhawongs, Phengta Vongphrachanh, Darouny Phonekeo, Andrew Corwin, Sok Touch, Philippe Buchy, Nora Chea, Paul Kitsutani, Le Quynh Mai, Vu Dinh Thiem, Raymond Lin, Constance Low, Chong Chee Kheong, Norizah Ismail, Mohd Apandi Yusof, Amado Tandoc III, Vito Roque Jr, Akhilesh Mishra, Ann C Moen, Marc-Alain Widdowson, Jeffrey Partridge, and Renu B Lal
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Public aspects of medicine ,RA1-1270 - Abstract
Objective To characterize influenza seasonality and identify the best time of the year for vaccination against influenza in tropical and subtropical countries of southern and south-eastern Asia that lie north of the equator. Methods Weekly influenza surveillance data for 2006 to 2011 were obtained from Bangladesh, Cambodia, India, Indonesia, the Lao People's Democratic Republic, Malaysia, the Philippines, Singapore, Thailand and Viet Nam. Weekly rates of influenza activity were based on the percentage of all nasopharyngeal samples collected during the year that tested positive for influenza virus or viral nucleic acid on any given week. Monthly positivity rates were then calculated to define annual peaks of influenza activity in each country and across countries. Findings Influenza activity peaked between June/July and October in seven countries, three of which showed a second peak in December to February. Countries closer to the equator had year-round circulation without discrete peaks. Viral types and subtypes varied from year to year but not across countries in a given year. The cumulative proportion of specimens that tested positive from June to November was > 60% in Bangladesh, Cambodia, India, the Lao People's Democratic Republic, the Philippines, Thailand and Viet Nam. Thus, these tropical and subtropical countries exhibited earlier influenza activity peaks than temperate climate countries north of the equator. Conclusion Most southern and south-eastern Asian countries lying north of the equator should consider vaccinating against influenza from April to June; countries near the equator without a distinct peak in influenza activity can base vaccination timing on local factors.
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- 2014
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20. Evaluation of case definitions for estimation of respiratory syncytial virus associated hospitalizations among children in a rural community of northern India
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Siddhartha Saha, Bharti Gaur Pandey, Avinash Choudeka, Anand Krishnan, Susan I. Gerber, Sanjay K. Ra, Pratibha Singh, Mandeep Chadha, Renu B. Lal, and Shobha Broor
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Case definitions ,RSV ,rural India ,Medicine ,Public aspects of medicine ,RA1-1270 - Abstract
The burden estimation studies for respiratory syncytial virus (RSV) have been based on varied case definitions, including case–definitions designed for influenza surveillance systems. We used all medical admissions among children aged 0–59 months to study the effect of case definitions on estimation of RSV–associated hospitalizations rates. The hospital–based daily surveillance enrolled children aged 0–59 months admitted with acute medical conditions from July 2009–December 2012, from a well–defined rural population in Ballabgarh in northern India. All study participants were examined and nasal and throat swabs taken for testing by real–time polymerase chain reaction (RT–PCR) for RSV and influenza virus. Clinical data were used to retrospectively evaluate World Health Organization (WHO) case definitions (2011) commonly used for surveillance of respiratory pathogens, ie, acute respiratory illness (WHO–ARI), severe ARI (SARI) and influenza–like illness (ILI), for determination of RSV–associated hospitalization. RSV–associated hospitalization rates adjusted for admissions at non–study hospitals were calculated. Out of 505 children enrolled, 82 (16.2%) tested positive for RSV. Annual incidence rates of RSV–associated hospitalization per 1000 children were highest among infants aged 0–5 months (15.2; 95% confidence interval (CI) 8.3–26.8), followed by ages 6–23 months (5.3, 95% CI 3.2–8.7) and lowest among children 24–59 months (0.5, 95% CI 0.1–1.5). The RSV positive children were more likely to have signs of respiratory distress like wheeze, chest in–drawing, tachypnea, and crepitation compared to RSV–negative based on bivariate comparisons. Other less commonly seen signs of respiratory distress, ie, nasal flaring, grunting, accessory muscle usage were also significantly associated with being RSV positive. Compared to the estimated RSV hospitalization rate based on all medical hospitalizations, the WHO–ARI case definition captured 86% of the total incidence, while case definitions requiring fever like ILI and SARI underestimated the incidence by 50–80%. Our study suggests that RSV is a substantial cause of hospitalization among children aged
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- 2015
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21. Dynamics of influenza seasonality at sub-regional levels in India and implications for vaccination timing.
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Mandeep S Chadha, Varsha A Potdar, Siddhartha Saha, Parvaiz A Koul, Shobha Broor, Lalit Dar, Mamta Chawla-Sarkar, Dipankar Biswas, Palani Gunasekaran, Asha Mary Abraham, Sunanda Shrikhande, Amita Jain, Balakrishnan Anukumar, Renu B Lal, and Akhilesh C Mishra
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Medicine ,Science - Abstract
Influenza surveillance is an important tool to identify emerging/reemerging strains, and defining seasonality. We describe the distinct patterns of circulating strains of the virus in different areas in India from 2009 to 2013.Patients in ten cities presenting with influenza like illness in out-patient departments of dispensaries/hospitals and hospitalized patients with severe acute respiratory infections were enrolled. Nasopharangeal swabs were tested for influenza viruses by real-time RT-PCR, and subtyping; antigenic and genetic analysis were carried out using standard assays.Of the 44,127 ILI/SARI cases, 6,193 (14.0%) were positive for influenza virus. Peaks of influenza were observed during July-September coinciding with monsoon in cities Delhi and Lucknow (north), Pune (west), Allaphuza (southwest), Nagpur (central), Kolkata (east) and Dibrugarh (northeast), whereas Chennai and Vellore (southeast) revealed peaks in October-November, coinciding with the monsoon months in these cities. In Srinagar (Northern most city at 34°N latitude) influenza circulation peaked in January-March in winter months. The patterns of circulating strains varied over the years: whereas A/H1N1pdm09 and type B co-circulated in 2009 and 2010, H3N2 was the predominant circulating strain in 2011, followed by circulation of A/H1N1pdm09 and influenza B in 2012 and return of A/H3N2 in 2013. Antigenic analysis revealed that most circulating viruses were close to vaccine selected viral strains.Our data shows that India, though physically located in northern hemisphere, has distinct seasonality that might be related to latitude and environmental factors. While cities with temperate seasonality will benefit from vaccination in September-October, cities with peaks in the monsoon season in July-September will benefit from vaccination in April-May. Continued surveillance is critical to understand regional differences in influenza seasonality at regional and sub-regional level, especially in countries with large latitude span.
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- 2015
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22. Informationally complete POVM-based shadow tomography.
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Atithi Acharya, Siddhartha Saha, and Anirvan M. Sengupta
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- 2021
23. Conceptual Model for the Use of Smart Glasses in Ubiquitous Teaching (u-teaching).
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Arzoo Atiq, Siddhartha Saha, and Farhaan Mirza
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- 2019
24. Clinical Significance of Fetal Echocardiography in Diagnosing Congenital Cardiac Anomalies: An Experience From Eastern India
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Nurul Islam, Siddhartha Saha, Tasdiqul Islam, Jheelam Mukherjee, and Mahua Roy
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General Medicine - Abstract
Background: The role of early diagnosis of fetal cardiac abnormalities (both structural and functional) on the postnatal outcome has been controversial in literature for decade. Our objective was to evaluate the role of fetal echocardiography (FE) as a diagnostic tool for early detection of fetal cardiac abnormalities and its appropriate management plan. Results: This is a cross-sectional analytical and descriptive study that included 4366 singleton pregnant women (4366 fetuses) referred for FE from 2014 to 2022. Indications for referral and perinatal risk factors were documented. FE and postnatal transthoracic echocardiography were done. Maximum number of fetal echo done for the indication of presence of ICEF (1538, 35.2%). Routine FE done in 1199 (27.5%) individual. In 501(11.5%) individual had bad obstetric history. Fetal cardiac abnormalities were detected in 175 fetuses (4%). CHDs in 149 (3.4%), fetal arrhythmia in 17 (0.4%)cardiomyopathy in 3 (0.07%) fetuses and cardiac mass (Rhabdomyoma) in 6 fetuses (0.14%). Of the structural CHDs, maximum number of cases were large VSD, found in 24 (13.7%) cases, Four cases with tiny muscular ventricular septal defects and two cases with coarctation of aorta, one case of TGA with IVS and one case of large VSD were missed by FE and were diagnosed postnatal. Six cases of critical congenital heart disease were underwent early lifesaving neonatal intervention. Conclusions: FE can accurately diagnose most of the cardiac anomalies though few errors remain challenging (aortic coarctation). It also offers a good chance for successful early life saving management of some types of cardiac lesions.
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- 2023
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25. Fast Buffer Memory with Deterministic Packet Departures.
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Mayank Kabra, Siddhartha Saha, and Bill Lin 0001
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- 2006
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26. Respiratory syncytial virus among children hospitalized with severe acute respiratory infection in Kashmir, a temperate region in northern India
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Parvaiz A Koul, Siddhartha Saha, Kaisar A Kaul, Hyder Mir, Varsha Potdar, Mandeep Chadha, Danielle Iuliano, Kathryn E Lafond, Renu B Lal, and Anand Krishnan
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Hospitalization ,Respiratory Syncytial Virus, Human ,Health Policy ,Influenza, Human ,Public Health, Environmental and Occupational Health ,Humans ,Infant ,Pneumonia ,Respiratory Syncytial Virus Infections ,Child ,Respiratory Tract Infections ,Phylogeny - Abstract
Severe acute respiratory infections (SARI) are a leading cause of hospitalizations in children, especially due to viral pathogens. We studied the prevalence of respiratory viruses among children aged5 years hospitalized with severe acute respiratory infections (SARI) in Kashmir, India.We conducted a prospective observational study in two tertiary care hospitals from October 2013 to September 2014, systematically enrolling two children aged5 years with SARI per day. We defined SARI as history of fever or measured fever (≥38°C) and cough with onset in the last 7 days requiring hospitalization for children aged 3-59 months and as physician-diagnosed acute lower respiratory infection for children aged3 months. Trained study staff screened children within 24 hours of hospitalization for SARI and collected clinical data and nasopharyngeal swabs from enrolled participants. We tested for respiratory syncytial virus (RSV) A and B, influenza viruses, rhinoviruses (HRV)/enteroviruses, adenovirus (AdV), bocavirus (BoV), human metapneumovirus (hMPV) A and B, coronaviruses (OC43, NL65, C229E), and parainfluenza viruses (PIV) 1, 2, 3 and 4 using standardized duplex real-time polymerase chain reaction.Among 4548 respiratory illness admissions screened from October 2013 to September 2014, 1026 met the SARI case definition, and 412 were enrolled (ages = 5 days to 58 months; median = 12 months). Among enrolees, 256 (62%) were positive for any virus; RSV was the most commonly detected (n = 118, 29%) followed by HRV/enteroviruses (n = 88, 21%), PIVs (n = 31, 8%), influenza viruses (n = 18, 4%), BoV (n = 15, 4%), coronaviruses (n = 16, 4%), AdV (n = 14, 3%), and hMPV (n = 9, 2%). Fifty-four children had evidence of virus co-detection. Influenza-associated SARI was more common among children aged 1-5 years (14/18, 78%) while most RSV detections occurred in children12 months (83/118, 70%). Of the RSV viruses typed (n = 116), the majority were type B (94, 80%). Phylogenetic analysis of G gene of RSV showed circulation of the BA9 genotype with 60bp nucleotide duplication.Respiratory viruses, especially RSV, contributed to a substantial proportion of SARI hospitalizations among children5 years in north India. These data can help guide clinicians on appropriate treatment and prevention strategies.
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- 2022
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27. An Extension of Scalable Global IP Anycasting for Load Balancing in the Internet.
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Siddhartha Saha, Kamalika Chaudhuri, and Dheeraj Sanghi
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- 2003
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28. Location determination of a mobile device using IEEE 802.11b access point signals.
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Siddhartha Saha, Kamalika Chaudhuri, Dheeraj Sanghi, and Pravin Bhagwat
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- 2003
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29. What do pregnant women think about influenza disease and vaccination practices in selected countries
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Yeny Tinoco, Carmen S. Arriola, Richard Florian, Siddhartha Saha, Surasak Kaoiean, Candice Romero, Joan Neyra, Tana Brummer, Piyarat Suntarattiwong, Archana Patel, Danielle R. Hunt, Wanitchaya Kittikraisak, Chalinthorn Sinthuwattanawibool, Prabir Kumar Das, Krissada Tomyabatra, Mark G. Thompson, Joshua A. Mott, Shikha Garg, Kunal Kurhe, Danielle Hombroek, Santiago Cabrera, Fatimah S. Dawood, Seema Parvekar, Giselle Soto, Savita Bhargav, Meredith G Wesley, Oswaldo Gonzales, Vaishali Khedikar, and Amber Prakash
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Health Knowledge, Attitudes, Practice ,knowledge ,medicine.medical_specialty ,practices ,030231 tropical medicine ,Immunology ,Disease ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Influenza, Human ,Humans ,Immunology and Allergy ,Medicine ,030212 general & internal medicine ,Pregnancy Complications, Infectious ,Child ,reproductive and urinary physiology ,Pharmacology ,attitudes ,business.industry ,Pregnant women ,Vaccination ,virus diseases ,Thailand ,influenza vaccination ,Cross-Sectional Studies ,Influenza Vaccines ,Family medicine ,Female ,influenza ,business ,Research Article ,Research Paper - Abstract
Introduction: We evaluated knowledge, attitudes, and practices (KAP) related to influenza and influenza vaccination among pregnant women in three selected countries. Methods: During 2017, pregnant women seeking antenatal care at hospitals at participating sites were enrolled. We described characteristics and responses to KAP questions. We also evaluated predictors associated with influenza vaccination during pregnancy at sites with substantial influenza vaccine uptake by multivariable logistic regression. Results: Overall, 4,648 pregnant women completed the survey. There were substantial differences among the three survey populations; only 8% of the women in Nagpur had heard of influenza, compared to 90% in Lima and 96% in Bangkok (p-value
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- 2021
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30. Unconventional use of NIH angiographic catheter in resource limited setup: A brief experience
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null Nurul Islam and null Siddhartha Saha
- Abstract
NIH (National Institute of Health) catheter is a side hole angiographic catheter. The angiographic catheter can be used equally well in both sampling and pressure recordings beyond angiography. Side hole catheter like NIH angiographic catheter is not used routinely for crossing stenotic valve with a wire through it. In a resource limited set up with less availability of catheters, NIH catheter can be used beyond the convention- to cross a stenotic valve through a J tip wire in it. In our Institution we have used NIH catheter with a J tip wire in multiple times, for crossing the stenosed pulmonary valve while doing Balloon pulmonary valvuloplasty. The rest of the procedure is done as per standard protocol. Though NIH catheter is having only side holes, it can also be used to cross a stenosed valve in difficult situation or resource limited set up.
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- 2022
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31. The need for a One Health approach for influenza surveillance
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Siddhartha Saha and William W Davis
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Population Surveillance ,Influenza, Human ,Humans ,General Medicine ,One Health - Published
- 2022
32. Social contact patterns and implications for infectious disease transmission – a systematic review and meta-analysis of contact surveys
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Oliver Ratmann, Claudio F. Lanata, David James Nokes, Joël Mossong, Andria Mousa, Kin On Kwok, Joseph T. Wu, Wan In Wei, Patrick G T Walker, Gail E. Potter, Aldiouma Diallo, Moses C. Kiti, Olivier le Polain de Waroux, Eleanor F. G. Neal, Anand Krishnan, Carl Morrow, Wirichada Pan-Ngum, Alessia Melegaro, Charles Whittaker, Robin Wood, Melodie Monod, Wiriya Mahikul, Marco Ajelli, Peter Winskill, Juanjuan Zhang, Supriya Kumar, Oliver J Watson, Rajesh Kumar, Siddhartha Saha, Carlos G. Grijalva, Fiona M. Russell, Peter J. Dodd, Jonathan D. Sugimoto, Kathy Leung, UK Research and Innovation, Imperial College London, Maladies infectieuses persistantes et émergentes en Afrique de l’Ouest [Dakar, Sénégal] (Equipe 3 - VITROME), Vecteurs - Infections tropicales et méditerranéennes (VITROME), and Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées [Brétigny-sur-Orge] (IRBA)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées [Brétigny-sur-Orge] (IRBA)
- Subjects
Male ,Psychological intervention ,0601 Biochemistry and Cell Biology ,GLOBAL HEALTH ,law.invention ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,social contact patterns ,law ,Epidemiology ,Global health ,EPIDEMIOLOGY, GLOBAL HEALTH, NONE ,EPIDEMIOLOGY ,Biology (General) ,pathogen transmission ,[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases ,Infectious disease transmission ,General Neuroscience ,General Medicine ,Middle Aged ,Respiratory pathogens ,Transmission (mechanics) ,Geography ,Meta-analysis ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,NONE ,Medicine ,contact surveys ,Female ,Research Article ,Adult ,2019-20 coronavirus outbreak ,medicine.medical_specialty ,Adolescent ,Social contact ,QH301-705.5 ,Science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Article ,General Biochemistry, Genetics and Molecular Biology ,Young Adult ,[SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system ,Disease Transmission, Infectious ,medicine ,Humans ,[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology ,Aged ,General Immunology and Microbiology ,SARS-CoV-2 ,COVID-19 ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Epidemiology and Global Health ,RA ,Demography - Abstract
Background: Transmission of respiratory pathogens such as SARS-CoV-2 depends on patterns of contact and mixing across populations. Understanding this is crucial to predict pathogen spread and the effectiveness of control efforts. Most analyses of contact patterns to date have focused on high-income settings. Methods: Here, we conduct a systematic review and individual-participant meta-analysis of surveys carried out in low- and middle-income countries and compare patterns of contact in these settings to surveys previously carried out in high-income countries. Using individual-level data from 28,503 participants and 413,069 contacts across 27 surveys, we explored how contact characteristics (number, location, duration, and whether physical) vary across income settings. Results: Contact rates declined with age in high- and upper-middle-income settings, but not in low-income settings, where adults aged 65+ made similar numbers of contacts as younger individuals and mixed with all age groups. Across all settings, increasing household size was a key determinant of contact frequency and characteristics, with low-income settings characterised by the largest, most intergenerational households. A higher proportion of contacts were made at home in low-income settings, and work/school contacts were more frequent in high-income strata. We also observed contrasting effects of gender across income strata on the frequency, duration, and type of contacts individuals made. Conclusions: These differences in contact patterns between settings have material consequences for both spread of respiratory pathogens and the effectiveness of different non-pharmaceutical interventions. Funding: This work is primarily being funded by joint Centre funding from the UK Medical Research Council and DFID (MR/R015600/1)., eLife digest Infectious diseases, particularly those caused by airborne pathogens like SARS-CoV-2, spread by social contact, and understanding how people mix is critical in controlling outbreaks. To explore these patterns, researchers typically carry out large contact surveys. Participants are asked for personal information (such as gender, age and occupation), as well as details of recent social contacts, usually those that happened in the last 24 hours. This information includes, the age and gender of the contact, where the interaction happened, how long it lasted, and whether it involved physical touch. These kinds of surveys help scientists to predict how infectious diseases might spread. But there is a problem: most of the data come from high-income countries, and there is evidence to suggest that social contact patterns differ between places. Therefore, data from these countries might not be useful for predicting how infections spread in lower-income regions. Here, Mousa et al. have collected and combined data from 27 contact surveys carried out before the COVID-19 pandemic to see how baseline social interactions vary between high- and lower-income settings. The comparison revealed that, in higher-income countries, the number of daily contacts people made decreased with age. But, in lower-income countries, younger and older individuals made similar numbers of contacts and mixed with all age groups. In higher-income countries, more contacts happened at work or school, while in low-income settings, more interactions happened at home and people were also more likely to live in larger, intergenerational households. Mousa et al. also found that gender affected how long contacts lasted and whether they involved physical contact, both of which are key risk factors for transmitting airborne pathogens. These findings can help researchers to predict how infectious diseases might spread in different settings. They can also be used to assess how effective non-medical restrictions, like shielding of the elderly and workplace closures, will be at reducing transmissions in different parts of the world.
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- 2022
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33. Shadow tomography based on informationally complete positive operator-valued measure
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Atithi Acharya, Anirvan M. Sengupta, and Siddhartha Saha
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Physics ,Operator (computer programming) ,business.industry ,Shadow ,Measure (physics) ,Computer vision ,Tomography ,Artificial intelligence ,business - Published
- 2021
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34. Author response: Social contact patterns and implications for infectious disease transmission – a systematic review and meta-analysis of contact surveys
- Author
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Andria Mousa, Peter Winskill, Oliver John Watson, Oliver Ratmann, Mélodie Monod, Marco Ajelli, Aldiouma Diallo, Peter J Dodd, Carlos G Grijalva, Moses Chapa Kiti, Anand Krishnan, Rakesh Kumar, Supriya Kumar, Kin O Kwok, Claudio F Lanata, Olivier Le Polain de Waroux, Kathy Leung, Wiriya Mahikul, Alessia Melegaro, Carl D Morrow, Joël Mossong, Eleanor FG Neal, D James Nokes, Wirichada Pan-ngum, Gail E Potter, Fiona M Russell, Siddhartha Saha, Jonathan D Sugimoto, Wan In Wei, Robin R Wood, Joseph Wu, Juanjuan Zhang, Patrick Walker, and Charles Whittaker
- Published
- 2021
- Full Text
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35. Efficacy of inactivated trivalent influenza vaccine in rural India: a 3-year cluster-randomised controlled trial
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Anand Krishnan, Wayne M. Sullender, Marc-Alain Widdowson, Paul Gargiullo, Shobha Broor, Karen B. Fowler, Debjani Ram Purakayastha, Siddhartha Saha, Seema Jain, Vivek Gupta, Francisco S. Palomeque, Raghuram Srungaram Vln, Renu B. Lal, and Kathryn E. Lafond
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Adult ,Male ,Rural Population ,Trivalent influenza vaccine ,Pediatrics ,medicine.medical_specialty ,Adolescent ,Influenza vaccine ,030231 tropical medicine ,Population ,India ,Article ,law.invention ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,Influenza, Human ,medicine ,Cluster Analysis ,Humans ,030212 general & internal medicine ,Child ,education ,Adverse effect ,Developing Countries ,Aged ,education.field_of_study ,business.industry ,lcsh:Public aspects of medicine ,Vaccination ,Infant ,lcsh:RA1-1270 ,General Medicine ,Middle Aged ,Vaccine efficacy ,Treatment Outcome ,Vaccines, Inactivated ,Influenza Vaccines ,Child, Preschool ,Inactivated Poliovirus Vaccine ,Immunization ,Female ,business - Abstract
Summary: Background: Paediatric vaccination against influenza can result in indirect protection, by reducing transmission to their unvaccinated contacts. We investigated whether influenza vaccination of children would protect them and their household members in a resource-limited setting. Methods: We did a cluster-randomised, blinded, controlled study in three villages in India. Clusters were defined as households (ie, dwellings that shared a courtyard), and children aged 6 months to 10 years were eligible for vaccination as and when they became age-eligible throughout the study. Households were randomly assigned (1:1) by a computer-based system to intramuscular trivalent inactivated influenza vaccine (IIV3) or a control of inactivated poliovirus vaccine (IPV) in the beginning of the study; vaccination occurred once a year for 3 years. The primary efficacy outcome was laboratory-confirmed influenza in a vaccinated child with febrile acute respiratory illness, analysed in the modified intention-to-treat population (ie, children who received at least one dose of vaccine, were under surveillance, and had not an influenza infection within 15 days of last vaccine dose). The secondary outcome for indirect effectiveness (surveillance study) was febrile acute respiratory illness in an unvaccinated household member of a vaccine study participant. Data from each year (year 1: November, 2009, to October, 2010; year 2: October, 2010, to October, 2011; and year 3: October, 2011, to May, 2012) were analysed separately. Safety was analysed among all participants who were vaccinated with at least one dose of the vaccine. This trial is registered with ClinicalTrials.gov, number NCT00934245. Findings: Between Nov 1, 2009, to May 1, 2012, we enrolled 3208 households, of which 1959 had vaccine-eligible children. 1010 households were assigned to IIV3 and 949 households were assigned to IPV. In 3 years, we vaccinated 4345 children (2132 with IIV3 and 2213 with IPV) from 1868 households (968 with IIV3 and 900 with IPV) with 10 813 unvaccinated household contacts. In year 1, influenza virus was detected in 151 (10%) of 1572 IIV3 recipients and 206 (13%) of 1633 of IPV recipients (total IIV3 vaccine efficacy 25·6% [95% CI 6·8–40·6]; p=0·010). In year 2, 105 (6%) of 1705 IIV3 recipients and 182 (10%) of 1814 IPV recipients had influenza (vaccine efficacy 41·0% [24·1–54·1]; p
- Published
- 2019
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36. Use of TaqMan Array card for the detection of respiratory viral pathogens in children under 5 years old hospitalised with acute medical illness in Ballabgarh, Haryana, India
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A. Danielle Iuliano, Brett Whitaker, Siddhartha Saha, Bharti Gaur, Shobha Broor, Sanjay K Rai, Jonas M. Winchell, Renu B. Lal, Seema Jain, and Anand Krishnan
- Subjects
0301 basic medicine ,viruses ,lcsh:QR1-502 ,specificity ,medicine.disease_cause ,lcsh:Microbiology ,law.invention ,0302 clinical medicine ,Immunology and Microbiology (miscellaneous) ,law ,Lab-On-A-Chip Devices ,Immunology and Allergy ,030212 general & internal medicine ,Monoplex ,Respiratory Tract Infections ,Micro-fluidic card ,Polymerase chain reaction ,biology ,virus diseases ,Microfluidic Analytical Techniques ,Infectious Diseases ,Molecular Diagnostic Techniques ,Child, Preschool ,Viruses ,Rhinovirus ,Microbiology (medical) ,030106 microbiology ,Immunology ,India ,Real-Time Polymerase Chain Reaction ,Microbiology ,Sensitivity and Specificity ,Virus ,viral pathogen diagnosis ,03 medical and health sciences ,Human metapneumovirus ,stomatognathic system ,medicine ,TaqMan ,Humans ,General Immunology and Microbiology ,business.industry ,Infant, Newborn ,Outbreak ,Infant ,biology.organism_classification ,sensitivity ,Virology ,Reverse transcriptase ,business - Abstract
Historical specimens collected from hospitalized children were tested for the following 13 viruses: influenza A and B; respiratory syncytial virus (RSV); parainfluenza viruses 1–3; human metapneumovirus; rhinovirus; coronaviruses 229E, OC43, NL63 and HKU1 and Adenovirus using monoplex real-time reverse transcriptase polymerase chain reaction (rRT-PCR). They were retested using TaqMan Array Card (TAC), a micro-fluidic system, capable of simultaneous multi-pathogen testing, to evaluate its sensitivity and specificity against monoplex rRT-PCR. TAC showed high sensitivity (71%–100%) and specificity (98%–100%) for these viruses in comparison to monoplex rRT-PCR. Multi-specimen detection with high sensitivity and specificity makes TAC a potentially useful tool for both surveillance and outbreak investigations.
- Published
- 2019
37. Incidence, risk factors, and viral etiology of community-acquired acute lower respiratory tract infection among older adults in rural north India
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Rajesh Kumar, Debjani Ram Purakayastha, Giridara Gopal, Shivram Dhakad, Aashish Choudhary, Anand Krishnan, Lalit Dar, Avinash Choudekar, Reshmi Chhokar, Siddhartha Saha, Ritvik Amarchand, Stephen Lindstrom, Brett Whitaker, Ramesh Kumar, Kathryn E. Lafond, Venkatesh Vinayak Narayan, Abhishek Wahi, and Aparajit Ballav Dey
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medicine.medical_specialty ,Chronic bronchitis ,030231 tropical medicine ,India ,Respiratory Syncytial Virus Infections ,Rate ratio ,03 medical and health sciences ,0302 clinical medicine ,Human metapneumovirus ,Risk Factors ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Risk factor ,Respiratory Tract Infections ,Aged ,biology ,business.industry ,Health Policy ,Incidence (epidemiology) ,Incidence ,Public Health, Environmental and Occupational Health ,Infant ,Odds ratio ,Articles ,biology.organism_classification ,respiratory tract diseases ,Respiratory Syncytial Virus, Human ,Cohort ,Etiology ,business - Abstract
Background There are limited data on incidence, risk factors and etiology of acute lower respiratory tract infection (LRTI) among older adults in low- and middle-income countries. Methods We established a cohort of community dwelling older adults ≥60 years and conducted weekly follow-up for acute respiratory infections (ARI) during 2015-2017. Nurses assessed ARI cases for LRTI, collecting combined nasal/throat swabs from all LRTI cases and an equal number of age- and sex-matched asymptomatic neighbourhood controls. Swabs were tested for influenza viruses, respiratory syncytial virus (RSV), human metapneumovirus (hMPV), and parainfluenza viruses (PIV) using polymerase chain reaction. LRTI and virus-specific LRTI incidence was calculated per 1000 person-years. We estimated adjusted incidence rate ratios (IRR) for risk factors using Poisson regression and calculated etiologic fractions (EF) using adjusted odds ratios for detection of viral pathogens in LRTI cases vs controls. Results We followed 1403 older adults for 2441 person-years. LRTI and LRTI-associated hospitalization incidences were 248.3 (95% confidence interval (CI) = 229.3-268.8) and 12.7 (95% CI = 8.9-18.1) per 1000 person-years. Persons with pre-existing chronic bronchitis as compared to those without (incidence rate ratio (IRR) = 4.7, 95% CI = 3.9-5.6); aged 65-74 years (IRR = 1.6, 95% CI = 1.3-2.0) and ≥75 years (IRR = 1.8, 95% CI = 1.4-2.4) as compared to 60-64 years; and persons in poorest wealth quintile (IRR = 1.4, 95% CI = 1.1-1.8); as compared to those in wealthiest quintile were at higher risk for LRTI. Virus was detected in 10.1% of LRTI cases, most commonly influenza (3.8%) and RSV (3.0%). EF for RSV and influenza virus was 83.9% and 83.6%, respectively. Conclusion In this rural cohort of older adults, the incidence of LRTI was substantial. Chronic bronchitis was an important risk factor; influenza virus and RSV were major viral pathogens.
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- 2021
38. Efficacy of live attenuated and inactivated influenza vaccines among children in rural India: A 2-year, randomized, triple-blind, placebo-controlled trial
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Venkatesh Vinayak Narayan, Kathryn E. Lafond, Ramesh Kumar, Shivram Dhakad, Seema Jain, Lalit Dar, Siddhartha Saha, Ritvik Amarchand, Stephen Lindstrom, Giridara Gopal, Aashish Choudhary, Marc-Alain Widdowson, Rajesh Kumar, Varsha Potdar, Mandeep S. Chadha, Avinash Choudekar, Reshmi Chokker, and Anand Krishnan
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Male ,Rural Population ,RNA viruses ,Viral Diseases ,Influenza Viruses ,Placebo-controlled study ,Pathology and Laboratory Medicine ,Geographical Locations ,Medical Conditions ,0302 clinical medicine ,Medicine and Health Sciences ,Live attenuated influenza vaccine ,Medicine ,Public and Occupational Health ,030212 general & internal medicine ,Child ,Vaccines ,Attenuated vaccine ,Viral Vaccine ,Vaccination ,Respiratory infection ,General Medicine ,Vaccination and Immunization ,Infectious Diseases ,Influenza Vaccines ,Medical Microbiology ,Child, Preschool ,Viral Pathogens ,Viruses ,Female ,Pathogens ,Research Article ,Attenuated Vaccines ,medicine.medical_specialty ,Asia ,Infectious Disease Control ,Influenza vaccine ,Immunology ,030231 tropical medicine ,India ,Vaccines, Attenuated ,Microbiology ,03 medical and health sciences ,Virology ,Internal medicine ,Influenza, Human ,Vaccine Development ,Humans ,Microbial Pathogens ,Administration, Intranasal ,business.industry ,Organisms ,Biology and Life Sciences ,Viral Vaccines ,Vaccine efficacy ,Influenza ,Vaccines, Inactivated ,Age Groups ,People and Places ,Population Groupings ,Preventive Medicine ,business ,Orthomyxoviruses - Abstract
Background Influenza is a cause of febrile acute respiratory infection (FARI) in India; however, few influenza vaccine trials have been conducted in India. We assessed absolute and relative efficacy of live attenuated influenza vaccine (LAIV) and inactivated influenza vaccine (IIV) among children aged 2 to 10 years in rural India through a randomized, triple-blind, placebo-controlled trial conducted over 2 years. Methods and findings In June 2015, children were randomly allocated to LAIV, IIV, intranasal placebo, or inactivated polio vaccine (IPV) in a 2:2:1:1 ratio. In June 2016, vaccination was repeated per original allocation. Overall, 3,041 children received LAIV (n = 1,015), IIV (n = 1,010), nasal placebo (n = 507), or IPV (n = 509). Mean age of children was 6.5 years with 20% aged 9 to 10 years. Through weekly home visits, nasal and throat swabs were collected from children with FARI and tested for influenza virus by polymerase chain reaction. The primary outcome was laboratory-confirmed influenza-associated FARI; vaccine efficacy (VE) was calculated using modified intention-to-treat (mITT) analysis by Cox proportional hazards model (PH) for each year. In Year 1, VE was 40.0% (95% confidence interval (CI) 25.2 to 51.9) for LAIV and 59.0% (95% CI 47.8 to 67.9) for IIV compared with controls; relative efficacy of LAIV compared with IIV was −46.2% (95% CI −88.9 to −13.1). In Year 2, VE was 51.9% (95% CI 42.0 to 60.1) for LAIV and 49.9% (95% CI 39.2 to 58.7) for IIV; relative efficacy of LAIV compared with IIV was 4.2% (95% CI −19.9 to 23.5). No serious adverse vaccine-attributable events were reported. Study limitations include differing dosage requirements for children between nasal and injectable vaccines (single dose of LAIV versus 2 doses of IIV) in Year 1 and the fact that immunogenicity studies were not conducted. Conclusions In this study, we found that LAIV and IIV vaccines were safe and moderately efficacious against influenza virus infection among Indian children. Trial registration Clinical Trials Registry of India CTRI/2015/06/005902., Anand Krishnan and co-workers study the efficacy and safety of influenza vaccines for children in India., Author summary Why was this study done? In recent years, 2 community-based trials of the single-dose Russian-backbone live attenuated influenza vaccine (LAIV) in low- and middle-income countries (LMIC) have been published, with contrasting results. In Senegal, LAIV vaccine efficacy (VE) was demonstrated to be 0.0% (95% confidence interval (CI) −26.4 to 20.9), and in Bangladesh, LAIV VE was demonstrated to be 41.0% (95% CI 28.0 to 51.6) against all influenza virus strains. In addition, observational studies for VE of LAIV such as in the United States and Europe have also shown mixed results. While the World Health Organization (WHO) continues to recommend LAIV use in children, conflicting data on LAIV have led countries to review and reconsider national preferential recommendations for LAIV use in children. Given these gaps in evidence and the potential for indigenously produced LAIV to be used for prevention of influenza virus infection in Indian children, we evaluated the absolute efficacy of LAIV and inactivated influenza vaccine (IIV) and relative efficacy of LAIV versus IIV among children aged 2 to 10 years in rural India. What did the researchers do and find? We conducted a 2-year, triple (participant–observer–analyst) blind, community-based vaccine trial. We randomly assigned 3,041 children aged 2 to 10 years to receive age appropriate doses of LAIV, IIV, or a control vaccine. In Year 1, VE was 40.0% (95% CI 25.2 to 51.9) for LAIV and 59.0% (95% CI 47.8 to 67.9) for IIV compared with controls; relative efficacy of LAIV compared with IIV was −46.2% (95% CI −88.9 to −13.1). In Year 2, VE was 51.9% (95% CI 42.0 to 60.1) for LAIV and 49.9% (95% CI 39.2 to 58.7) for IIV; relative efficacy of LAIV compared with IIV was 4.2% (95% CI −19.9 to 23.5). We found that LAIV and IIV were safe and moderately efficacious against laboratory-confirmed influenza virus infection. In Year 1, LAIV, as a single dose in a vaccine-naïve population, was significantly less efficacious than IIV, whereas in Year 2, VE for LAIV and IIV was similar. This was the first randomized controlled trial to our knowledge in a developing country setting that compared LAIV efficacy with IIV and provided VE by age group and influenza type/subtype across seasons spanning 2 consecutive years. Importantly, during both years, LAIV and IIV were protective against influenza A(H3N2) viruses. However, LAIV had limited efficacy against influenza A(H1N1)pdm09 for both years. What do these findings mean? Influenza vaccination is an important tool for preparedness and response against seasonal epidemics and pandemics. However, decisions on specific vaccine introductions into national immunization platforms depend on multiple factors including effectiveness, presence of existing immunization platforms and cold chain infrastructure, cost, and local production of the vaccines. Availability of indigenous, safe, and moderately efficacious influenza vaccines, including LAIV, should initiate discussion on the optimal use of vaccines for the national strategy for influenza prevention and control in India.
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- 2021
39. Carriage rates and antimicrobial sensitivity of pneumococci in the upper respiratory tract of children less than ten years old, in a north Indian rural community
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Fatimah S. Dawood, Debjani Ram Purakayastha, Ritvik Amarchand, Sambuddha Kumar, Seema Jain, Bimal Kumar Das, Rakesh Kumar, Siddhartha Saha, Arti Kapil, Kathryn E. Lafond, and Anand Krishnan
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Male ,Rural Population ,Pulmonology ,Artificial Gene Amplification and Extension ,Pathology and Laboratory Medicine ,Polymerase Chain Reaction ,Pneumococcal conjugate vaccine ,Cohort Studies ,Pneumococcal Vaccines ,Geographical Locations ,Medical Conditions ,Antibiotics ,Medicine and Health Sciences ,Medicine ,Child ,Vaccines ,Multidisciplinary ,Antimicrobials ,Drugs ,Pneumococcus ,Anti-Bacterial Agents ,Bacterial Pathogens ,medicine.anatomical_structure ,Streptococcus pneumoniae ,Infectious Diseases ,Medical Microbiology ,Child, Preschool ,Female ,medicine.symptom ,Pathogens ,Cohort study ,medicine.drug ,Research Article ,medicine.medical_specialty ,Asia ,Infectious Disease Control ,Science ,Erythromycin ,India ,Research and Analysis Methods ,Asymptomatic ,Microbiology ,Pneumococcal Infections ,Respiratory Disorders ,Throat ,Internal medicine ,Microbial Control ,Humans ,Molecular Biology Techniques ,Microbial Pathogens ,Molecular Biology ,Pharmacology ,Bacteria ,business.industry ,Organisms ,Biology and Life Sciences ,Streptococcus ,Penicillin ,Carriage ,Pneumococcal vaccine ,Conjugate Vaccines ,People and Places ,Respiratory Infections ,Antimicrobial Resistance ,business - Abstract
Pneumococcal carriage studies are important for vaccine introduction and treatment strategies. Pneumococcal carriage rates estimated in this cohort study among children in a rural community of northern India. Between August 2012 and August 2014, trained nurses made weekly home visits to screen enrolled children aged
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- 2020
40. Performance of Symptom-Based Case Definitions to Identify Influenza Virus Infection Among Pregnant Women in Middle-Income Countries: Findings From the Pregnancy and Influenza Multinational Epidemiologic (PRIME) Study
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Kunal Kurhe, Danielle Hombroek, Yeny Tinoco, Mark G. Thompson, Fatimah S. Dawood, Danielle R. Hunt, Chalinthorn Sinthuwattanawibool, Archana Patel, Shikha Garg, Oswaldo Gonzales, Joshua A. Mott, Carmen S. Arriola, Savita Bhargav, Parker Malek, Siddhartha Saha, Santiago Cabrera, Wanitchaya Kittikraisak, Tana Brummer, Amber Prakash, Richard Florian, Giselle Soto, Prabir Kumar Das, Edwin Llajaruna, Piyarat Suntarratiwong, Meredith G Wesley, and Eduardo Azziz-Baumgartner
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Microbiology (medical) ,myalgia ,medicine.medical_specialty ,business.industry ,Public health ,Odds ratio ,Orthomyxoviridae ,Confidence interval ,Infectious Diseases ,Pregnancy ,Internal medicine ,Cohort ,Influenza, Human ,medicine ,Sore throat ,Global health ,Humans ,Chills ,Female ,Pregnant Women ,medicine.symptom ,Pregnancy Complications, Infectious ,business ,Developing Countries - Abstract
Background The World Health Organization (WHO) recommends case definitions for influenza surveillance that are also used in public health research, although their performance has not been assessed in many risk groups, including pregnant women in whom influenza may manifest differently. We evaluated the performance of symptom-based definitions to detect influenza in a cohort of pregnant women in India, Peru, and Thailand. Methods In 2017 and 2018, we contacted 11 277 pregnant women twice weekly during the influenza season to identify illnesses with new or worsened cough, runny nose, sore throat, difficulty breathing, or myalgia and collected data on other symptoms and nasal swabs for influenza real-time reverse transcription–polymerase chain reaction (rRT-PCR) testing. We calculated sensitivity, specificity, positive-predictive value, and negative-predictive value of each symptom predictor, WHO respiratory illness case definitions, and a de novo definition derived from results of multivariable modeling. Results Of 5444 eligible illness episodes among 3965 participants, 310 (6%) were positive for influenza. In a multivariable model, measured fever ≥38°C (adjusted odds ratio [95% confidence interval], 4.6 [3.1–6.8]), myalgia (3.0 [2.2–4.0]), cough (2.7 [1.9–3.9]), and chills (1.6 [1.1–2.4]) were independently associated with influenza illness. A definition based on these 4 (measured fever, cough, chills, or myalgia) was 95% sensitive and 27% specific. The WHO influenza-like illness (ILI) definition was 16% sensitive and 98% specific. Conclusions The current WHO ILI case definition was highly specific but had low sensitivity. The intended use of case definitions should be considered when evaluating the tradeoff between sensitivity and specificity.
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- 2020
41. Burden of influenza-associated respiratory and circulatory mortality in India, 2010-2013
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Joseph S. Bresee, Rajeev Kumar, Venkatesh Vinayak Narayan, Vishnubhatla Sreenivas, Anand Krishnan, Katherine Roguski, Mandeep S. Chadha, A. Danielle Iuliano, Shashi Kant, Siddhartha Saha, Partha Haldar, Seema Jain, and Rohit Bhardwaj
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Adult ,Male ,Adolescent ,030231 tropical medicine ,Population ,Respiratory Tract Diseases ,Developing country ,India ,Cardiovascular System ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Cause of Death ,Influenza prevention ,Influenza, Human ,Medicine ,Humans ,030212 general & internal medicine ,Respiratory system ,Young adult ,education ,Child ,Cause of death ,Aged ,education.field_of_study ,business.industry ,Health Policy ,Mortality rate ,Public Health, Environmental and Occupational Health ,Age Factors ,Infant ,Articles ,Middle Aged ,Confidence interval ,Child, Preschool ,Female ,Seasons ,business ,Demography - Abstract
Background Influenza causes substantial morbidity and mortality worldwide, however, reliable burden estimates from developing countries are limited, including India. We aimed to quantify influenza-associated mortality for India utilizing 2010-2013 nationally representative data sources for influenza virus circulation and deaths. Methods Virological data were obtained from the influenza surveillance network of 10 laboratories led by National Institute of Virology, Pune covering eight states from 2010-2013. Death data were obtained from the nationally representative Sample Registration System for the same time period. Generalized linear regression with negative binomial distribution was used to model weekly respiratory and circulatory deaths by age group and proportion of specimens positive for influenza by subtype; excess deaths above the seasonal baseline were taken as an estimate of influenza-associated mortality counts and rates. Annual excess death rates and the 2011 India Census data were used to estimate national influenza-associated deaths. Results Estimated annual influenza-associated respiratory mortality rates were highest for those ≥65 years (51.1, 95% confidence interval (CI) = 9.2-93.0 deaths/100 000 population) followed by those
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- 2020
42. Cohort profile: Indian Network of Population-Based Surveillance Platforms for Influenza and Other Respiratory Viruses among the Elderly (INSPIRE)
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Aslesh Ottapura Prabhakaran, Rajesh Kumar, Sumit D Bhardwaj, Varsha Potdar, Anand Krishnan, Cp Girish Kumar, Prabu Rajkumar, Suman Kanungo, Eduardo Azziz-Baumgartner, Avinash Choudekar, Ashish Choudhary, Kathryn E. Lafond, Ritvik Amarchand, Lalit Dar, Shivram Dhakad, Byomkesh Manna, Alok Kumar Chakrabarti, Giridara Gopal Parameswaran, and Siddhartha Saha
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medicine.medical_specialty ,Epidemiology ,India ,Respiratory Syncytial Virus Infections ,infectious diseases ,Environmental health ,Influenza, Human ,Health care ,medicine ,Humans ,Respiratory Tract Infections ,Aged ,Respiratory tract infections ,SARS-CoV-2 ,business.industry ,Incidence (epidemiology) ,Public health ,public health ,COVID-19 ,Infant ,General Medicine ,Vaccination ,Open data ,Respiratory Syncytial Virus, Human ,Viruses ,Cohort ,Medicine ,business - Abstract
PurposeWe describe here a multicentric community-dwelling cohort of older adults (>60 years of age) established to estimate incidence, study risk factors, healthcare utilisation and economic burden associated with influenza and respiratory syncytial virus (RSV) in India.ParticipantsThe four sites of this cohort are in northern (Ballabgarh), southern (Chennai), eastern (Kolkata) and western (Pune) parts of India. We enrolled 5336 participants across 4220 households and began surveillance in July 2018 for viral respiratory infections with additional participants enrolled annually. Trained field workers collected data about individual-level and household-level risk factors at enrolment and quarterly assessed frailty and grip strength. Trained nurses surveilled weekly to identify acute respiratory infections (ARI) and clinically assessed individuals to diagnose acute lower respiratory infection (ALRI) as per protocol. Nasal and oropharyngeal swabs are collected from all ALRI cases and one-fifth of the other ARI cases for laboratory testing. Cost data of the episode are collected using the WHO approach for estimating the economic burden of seasonal influenza. Handheld tablets with Open Data Kit platform were used for data collection.Findings to dateThe attrition of 352 participants due to migration and deaths was offset by enrolling 680 new entrants in the second year. All four sites reported negligible influenza vaccination uptake (0.1%–0.4%), low health insurance coverage (0.4%–22%) and high tobacco use (19%–52%). Ballabgarh had the highest proportion (54.4%) of households in the richest wealth quintile, but reported high solid fuel use (92%). Frailty levels were highest in Kolkata (11.3%) and lowest in Pune (6.8%). The Chennai cohort had highest self-reported morbidity (90.1%).Future plansThe findings of this cohort will be used to inform prioritisation of strategies for influenza and RSV control for older adults in India. We also plan to conduct epidemiological studies of SARS-CoV-2 using this platform.
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- 2021
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43. Evaluation of data sources and approaches for estimation of influenza‐associated mortality in India
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Katherine Roguski, Anand Krishnan, Sanjay Zodpey, Shashi Kant, Partha Haldar, Angela D. Iuliano, Vishnubhatla Sreenivas, Chandrakant S Pandav, Seema Jain, Siddhartha Saha, and Venkatesh Vinayak Narayan
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Pulmonary and Respiratory Medicine ,Epidemiology ,030231 tropical medicine ,India ,Representativeness heuristic ,03 medical and health sciences ,Survey methodology ,symbols.namesake ,0302 clinical medicine ,Risk Factors ,Environmental health ,Influenza, Human ,Medicine ,Humans ,030212 general & internal medicine ,Poisson regression ,Registries ,Disease Notification ,Cause of death ,business.industry ,Public Health, Environmental and Occupational Health ,Absolute risk reduction ,Regression analysis ,Original Articles ,Verbal autopsy ,mortality ,Infectious Diseases ,Sample size determination ,Population Surveillance ,symbols ,Regression Analysis ,Original Article ,business ,influenza - Abstract
Background No estimates of influenza-associated mortality exist for India. Objective To evaluate national mortality and viral surveillance data from India for assessing their appropriateness in estimating influenza-associated mortality using varied analytic approaches. Methods We reviewed influenza virus surveillance data from a national influenza surveillance network. We also reviewed national mortality data from Civil Registration System (CRS), Medical Certification of Cause of Death (MCCD) and the Sample Registration System (SRS). We compared and scored the different sources of mortality data using specific criteria, including the process of cause of death assignment, sample size, proportion of ill-defined deaths, representativeness and availability of time series data. Each of these 5 parameters was scored on a scale from 1 to 5. To evaluate how to generate an influenza-associated mortality estimate for India, we also reviewed 4 methodologic approaches to assess the appropriateness of their assumptions and requirements for these data sets. Results The influenza virus surveillance data included year-round sample testing for influenza virus and was found to be suitable for influenza mortality estimation modelling. Based on scoring for the 5 mortality data criteria, the SRS data had the highest score with 20 of 25 possible score, whereas MCCD and CRS scored 16 and 12, respectively. The SRS which used verbal autopsy survey methods was determined to be nationally representative and thus adequate for estimating influenza-associated mortality. Evaluation of the modelling methods demonstrated that Poisson regression, risk difference and mortality multiplier methods could be applied to the Indian setting. Conclusion Despite significant challenges, it is possible to estimate influenza-associated mortality in India.
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- 2017
44. Strongly interacting spin-orbit coupled Bose-Einstein condensates in one dimension
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Siddhartha Saha, Elio J. König, Junhyun Lee, and Jedediah Pixley
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Physics ,Condensed Matter::Quantum Gases ,Optical lattice ,Strongly Correlated Electrons (cond-mat.str-el) ,Condensed matter physics ,FOS: Physical sciences ,law.invention ,Superfluidity ,Condensed Matter - Strongly Correlated Electrons ,Quantum Gases (cond-mat.quant-gas) ,law ,Lattice (order) ,Antiferromagnetism ,Condensed Matter::Strongly Correlated Electrons ,Condensed Matter - Quantum Gases ,Charge density wave ,Bose–Einstein condensate ,Boson - Abstract
We theoretically study dilute superfluidity of spin-1 bosons with antiferromagnetic interactions and synthetic spin-orbit coupling (SOC) in a one-dimensional lattice. Employing a combination of density matrix renormalization group and quantum field theoretical techniques we demonstrate the appearance of a robust superfluid spin-liquid phase in which the spin-sector of this spinor Bose-Einstein condensate remains quantum disordered even after introducing quadratic Zeeman and helical magnetic fields. Despite remaining disordered, the presence of these symmetry breaking fields lifts the perfect spin-charge separation and thus the nematic correlators obey power-law behavior. We demonstrate that, at strong coupling, the SOC induces a charge density wave state that is not accessible in the presence of linear and quadratic Zeeman fields alone. In addition, the SOC induces oscillations in the spin and nematic expectation values as well as the bosonic Green's function. These non-trivial effects of a SOC are suppressed under the application of a large quadratic Zeeman field. We discuss how our results could be observed in experiments on ultracold gases of $^{23}$Na in an optical lattice., 17 pages, 15 figures
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- 2019
45. Epidemiology of viral acute lower respiratory infections in a community-based cohort of rural north Indian children
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Anand Krishnan, Siddhartha Saha, Vishnubhatla Sreenivas, Rakesh Kumar, Marc-Alain Widdowson, Bharti Gaur Pandey, Kathryn E. Lafond, Avinash Choudekar, Shobha Broor, Seema Jain, Brett Whitaker, Venkatesh Vinayak Narayan, Sushil K. Kabra, Debjani R Purkayastha, Giridara Gopal, Ritvik Amarchand, and Stephen Lindstrom
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Male ,Rural Population ,medicine.medical_specialty ,030231 tropical medicine ,India ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Human metapneumovirus ,Internal medicine ,Throat ,Epidemiology ,Sore throat ,Humans ,Medicine ,030212 general & internal medicine ,Child ,Respiratory Tract Infections ,2. Zero hunger ,biology ,business.industry ,Incidence ,Health Policy ,Incidence (epidemiology) ,Public Health, Environmental and Occupational Health ,Infant ,Articles ,Odds ratio ,biology.organism_classification ,3. Good health ,medicine.anatomical_structure ,Child, Preschool ,Acute Disease ,Cohort ,Female ,medicine.symptom ,business ,Cohort study - Abstract
Background In India, community-based acute lower respiratory infections (ALRI) burden studies are limited, hampering development of prevention and control strategies. Methods We surveyed children
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- 2019
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46. Characterization of the mast cell surface proteome leads to the identification of CD98hc as a critical surface molecule for optimal mast cell function
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Adrian Martin Piliponsky, Siddhartha Saha, Nyssa Samanas, Nicholas J Shubin, Kerri Niino, Gauri Bhise, Manasa Acharya, Albert Seo, Nathan Camp, Gail Deutsch, and Richard James
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Immunology ,Immunology and Allergy - Abstract
Mast cells are known for their involvement in many distinct pathological conditions, suggesting that mast cells recognize and respond to various stimuli and thus require a rich cell surface protein repertoire. Mast cell surface proteomes have not been comprehensively characterized. In this study, we aimed to further characterize the mast cell surface proteome to obtain a better understanding of how mast cells function in health and disease. We enriched for glycosylated surface proteins expressed in murine bone marrow-derived mast cells (BMCMCs) and identified them using mass spectrometry analysis. This approach resulted in the identification of 1270 proteins in BMCMCs, 403 of which were localized to the plasma membrane. The most common protein classes among plasma membrane proteins are represented by small GTPases, receptors and transporters. Novel surface proteins in mast cells was validated by qPCR and flow cytometry analysis in BMCMCs and peritoneal mast cells (PMCs). Among the novel surface proteins, we found that CD98 heavy chain (CD98hc) encoded by the Slc3a2 gene, was highly expressed in mast cells. Slc3a2 gene disruption by CRISPR/Cas9 gene editing resulted in a significant reduction in CD98hc expression, mast cell degranulation, adhesion and proliferation. Our study indicates that we can use glycoprotein enrichment coupled with mass spectrometry to identify novel surface molecules in mast cells. Moreover, we found that CD98hc plays an important role in mast cell function.
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- 2021
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47. Evidence for sexual dimorphism in mast cell-mediated innate immune response against Group B Streptococcus
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Adrian Martin Piliponsky, Claire Gendrin, Phoenicia Quach, Eric Guga, Gauri Bhise, Siddhartha Saha, Alyssa Brokaw, Adam Moeser, and Lakshmi Rajagopal
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Immunology ,Immunology and Allergy - Abstract
Mast cell response to stimuli was recently described to be sexually dimorphic with female mast cells exhibiting increased ability to produce and release mediators upon activation. This suggests that female mast cells may have evolutionary advantages and an important role in innate immunity. In fact, sexual dimorphism of mast cell innate immune function may be particularly relevant to our understanding of mast cell contribution to host immunity against Group B Streptococcus, a bacterial pathogen associated with pre-term birth. This hypothesis is supported by our published studies, which indicate that mast cells contribute to host defense against systemic GBS infection and our observations that female mice are more efficient in their ability to limit systemic GBS infection than male mice. The contribution of individual sexually dimorphic factors to the immune response against GBS is unknown. Here, we show that female mice produce higher amounts of pre-formed coagulation factor XIIIA (FXIIIA) when compared to corresponding male mice, and that female bone marrow-derived cultured mast cells contain higher amounts of FXIIIA than male mast cells. We used FXIII-deficient mice to show that FXIIIA decreases the severity of systemic GBS infections. Moreover, our studies indicate that FXIIIA limits GBS dissemination by enhancing bacteria entrapment within fibrin clots. Together, these studies have the potential to provide novel mechanistic understanding into how female mast cells contribute towards defense against GBS infection and promote successful pregnancies via the release of FXIIIA.
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- 2020
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48. Respiratory viruses in returning Hajj & Umrah pilgrims with acute respiratory illness in 2014-2015
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Renu B. Lal, Varsha Potdar, Mandeep S. Chadha, Marc-Alain Widdowson, Anand Krishnan, Siddhartha Saha, Parvaiz A Koul, and Hyder Mir
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Adult ,Male ,Acute respiratory infection - coronavirus - Hajj pilgrims - influenza virus - respiratory syncytial virus - respiratory viruses ,0301 basic medicine ,Oseltamivir ,medicine.medical_specialty ,Middle East respiratory syndrome coronavirus ,respiratory syncytial virus ,viruses ,030106 microbiology ,coronavirus ,India ,lcsh:Medicine ,Religious Missions ,medicine.disease_cause ,influenza virus ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,respiratory viruses ,Internal medicine ,Disease Transmission, Infectious ,medicine ,Humans ,Infection control ,030212 general & internal medicine ,Respiratory Tract Infections ,Coronavirus ,Hajj pilgrims ,Travel ,Respiratory tract infections ,Transmission (medicine) ,business.industry ,lcsh:R ,General Medicine ,Middle Aged ,Orthomyxoviridae ,3. Good health ,chemistry ,Acute respiratory infection ,Respiratory Syncytial Virus, Human ,Communicable Disease Control ,Original Article ,Female ,Hajj ,Public Health ,Rhinovirus ,business - Abstract
Background & objectives: Respiratory tract infections are common among Hajj and Umrah pilgrims which pose a public health risk of spread of respiratory infections. Influenza has been reported from Indian Hajj and Umrah returning pilgrims, but data on other respiratory pathogens are sparse in India. Here we report the presence of common respiratory viral pathogens in returning Hajj and Umrah pilgrims suffering from acute respiratory illness (ARI) in 2014-2015. Methods: Respiratory specimens (nasopharyngeal and throat swabs) were collected from 300 consenting pilgrims with ARI in the past one week and tested for influenza and Middle East Respiratory Syndrome coronavirus (MERS-CoV) and other respiratory viruses using in-house standardized quantitative real-time reverse-transcription polymerase chain reaction. Clinical features among the pathogen positive and negative patients were compared. The patients received symptomatic treatment and antivirals where appropriate and were followed telephonically to collect data on illness outcome. Results: Ninety seven (32.3%) of the 300 participants were tested positive for any virus, most common being influenza viruses (n=33, 11%). Other respiratory viruses that were detected included human coronaviruses [n=26, 8.7%; OC43 (n=19, 6.3%) and C229E (n=7, 2.3%)], rhinovirus (n=20, 6%), adenoviruses (n=8, 2.6%), parainfluenza viruses (n=7, 2.3%), respiratory syncytial virus (n=3, 1%) and bocaviruses (n=2, 0.6%). Clinical features observed in pathogen positive and pathogen negative patients did not differ significantly. Eighteen influenza positive patients were treated with oseltamivir. Interpretation & conclusions: Pilgrims returning from mass gatherings are often afflicted with respiratory pathogens with a potential to facilitate transmission of respiratory pathogens across international borders. The study reinforces the need for better infection prevention and control measures such as vaccination, health education on cough etiquette and hand hygiene.
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- 2018
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49. STATIC STRUCTURAL ANALYSIS OF SUSPENSION ARM USING FINITE ELEMENT METHOD
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Jagwinder Singh and Siddhartha Saha
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Engineering ,business.industry ,Structural engineering ,Finite element method ,Stress (mechanics) ,Vibration ,Vehicle frame ,Knuckle ,medicine.anatomical_structure ,Control arm ,medicine ,business ,Suspension (vehicle) ,Size effect on structural strength - Abstract
The function of suspension system is to absorb vibrations due to rough terrains or road disturbances and to provide stability under circumstances like accelerating, cornering, uneven road, braking, loading and unloading etc. Control arm is one of the most important part of the suspension system, as it joins the steering knuckle to the vehicle frame. Also suspension arm is responsible for up and down movement of wheels when hitting bumps. It is also designed to maximize the friction between tire contacts, patch the road surface to provide vehicle stability under any circumstances. It can be seen in many types of the suspensions like wishbone or double wishbone suspensions. Many times it is also called as A-type control arm. In this study control arm was reverse engineered. Reverse engineering refers to the process of obtaining a CAD model from an existing physical part. CAD model was prepared using CATIA v5 software and finite element analysis was done using ANSYS 14.5 software by importing the parasolid file to ANSYS. The model is subjected to loading and boundary conditions and then analyzed using the FEA techniques. The static structural analysis was done to find out the stress, deformation and safety factor of component. The model was meshed using 10-noded tetrahedral elements. Result obtained from the analysis were studied to check whether the design is safe or not. In some cases the stresses becomes more than safe limit. In that case optimization approach is carried out to increase the structural strength of the component. In this case maximum von-misses stress is 211 MPa which is below the yield strength of the material.
- Published
- 2015
- Full Text
- View/download PDF
50. Differences in Influenza Seasonality by Latitude, Northern India
- Author
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Renu B. Lal, Shobha Broor, Catherine B. Smith, Siddhartha Saha, Parvaiz A Koul, Michael W. Shaw, John R. Barnes, and Mandeep S. Chadha
- Subjects
Microbiology (medical) ,pandemic influenza ,Epidemiology ,030231 tropical medicine ,India ,lcsh:Medicine ,geography ,Latitude ,lcsh:Infectious and parasitic diseases ,New Delhi ,03 medical and health sciences ,0302 clinical medicine ,Influenza, Human ,medicine ,Humans ,viruses ,lcsh:RC109-216 ,030212 general & internal medicine ,Socioeconomics ,seasonality ,Srinagar ,lcsh:R ,Dispatch ,Tropics ,virus diseases ,latitude ,Seasonality ,medicine.disease ,Virology ,3. Good health ,Vaccination ,Infectious Diseases ,Geography ,New delhi ,seasonal influenza ,Seasons ,influenza ,Differences in Influenza Seasonality by Latitude, Northern India ,geographic locations - Abstract
The seasonality of influenza in the tropics complicates vaccination timing. We investigated influenza seasonality in northern India and found influenza positivity peaked in Srinagar (34.09°N) in January-March but peaked in New Delhi (28.66°N) in July-September. Srinagar should consider influenza vaccination in October-November, but New Delhi should vaccinate in May-June.
- Published
- 2014
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