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In this study, the Senegal River, being the main source of water, plays a crucial role in the area's agricultural development. Irrigation on the M'Pourie plain using water from the Senegal River is carried out without any prior sanitation control. An evaluation of the quality of irrigation water and its impact on soil salinization in different agricultural plots soil salinity is crucial for the effective utilization of traditional irrigation water over extended periods. Comprehensive physico-chemical analyses were conducted across nine locations on the M'Pourie plain in Rosso during the dynamic seasons of 2021-2023. Nevertheless, a relatively small number of studies have employed soil salinity indexing methods to examine the consequences of river irrigation on soil salinity. The analysis and interpretation of the results obtained were based both on classic methods (average and correlations) and more advanced techniques such as principal component analysis (PCA) and the Piper diagram which allow characterization and a spatial typology of water. Analysis of the Piper diagram highlights the distinction between two groups of water, weakly and moderately mineralized, ranging from 52.22 µS.cm-1 in the dry season to 72.22 µS.cm-1 in the rainy season, presenting a sodium-potassium bicarbonate facies The variability of irrigation water supplies, proves to be important in the functioning of an agro-systems. Two modes of operation have become individualized: the dry phase mode, characterized by very strong mineralization of the water linked to a significant load of dissolved elements, and the wet phase mode, whose water quality is poorly mineralized but shows the impact that its irrigation water can represent in the loading of organic and mineral pollution and the need for strict control of these waters upstream before their agricultural use. The results of this study show the absence of risks of soil salinization in relation to the chemical nature of irrigation water and the impact of agriculture on the M'Pourie plain. [ABSTRACT FROM AUTHOR]

Abstract The RNA-dependent RNA polymerase (RdRp), 3C-like protease (3CLpro), and papain-like protease (PLpro) are pivotal components in the viral life cycle of SARS-CoV-2, presenting as promising therapeutic targets. Currently, all FDA-approved antiviral drugs against SARS-CoV-2 are RdRp or 3CLpro inhibitors. However, the mutations causing drug resistance have been observed in RdRp and 3CLpro from SARS-CoV-2, which makes it necessary to develop antivirals with novel mechanisms. Through the application of a structure-based drug design (SBDD) approach, we discover a series of novel potent non-covalent PLpro inhibitors with remarkable in vitro potency and in vivo PK properties. The co-crystal structures of PLpro with lead compounds reveal that the residues D164 and Q269 around the S2 site are critical for improving the inhibitor’s potency. The lead compound GZNL-P36 not only inhibits SARS-CoV-2 and its variants at the cellular level with EC50 ranging from 58.2 nM to 306.2 nM, but also inhibits HCoV-NL63 and HCoV-229E with EC50 of 81.6 nM and 2.66 μM, respectively. Oral administration of the GZNL-P36 results in significantly improved survival and notable reductions in lung viral loads and lesions in SARS-CoV-2 infection mouse model, consistent with RNA-seq data analysis. Our results indicate that PLpro inhibitors represent a promising SARS-CoV-2 therapy.

Ground observations are often considered as the most reliable and precise source of precipitation data. However, long-term precipitation data from ground observations are lacking in many parts of the world. Gridded precipitation products (GPPs) therefore have emerged as crucial alternatives to ground observations, but it is essential to assess their capability to accurately replicate precipitation patterns. This study aims to evaluate the performance of five GPPs, NASA POWER, TerraClimate, Climate Hazards Group Infrared Precipitation with Climate Data (CHIRPS), GPCC, and Climate Research Unit (CRU), in capturing precipitation and drought patterns from 1981 to 2021 in Yobe, Nigeria. The results indicate that GPCC had good performance at both monthly and annual scales, with high correlation coefficients and low error values. However, it tends to underestimate precipitation amounts in certain areas. Other products also exhibit satisfactory performance with moderate correlations with ground observations. Drought analysis indicates that GPCC outperforms other products in standardised precipitation index-6 calculations, while NASA POWER demonstrates inconsistencies with ground observations, particularly during the early 1980s and mid-2000s. In conclusion, GPCC is the most preferable GPP for precipitation and drought analysis in the Yobe State in Nigeria. HIGHLIGHTS Evaluation of five gridded precipitation products (GPPs) in northern Nigeria.; GPPs captured monthly precipitation better than annual precipitation.; GPPs underestimated precipitation in the western Yobe.; GPCC performed better than other GPPs in Kobe, Nigeria.; GPCC and Climate Research Unit are suitable for calculating the standardised precipitation index-6 index.;

Summary: Programmed cell death (PCD) is tightly orchestrated by molecularly defined executors and signaling pathways. NLRP6, a member of cytoplasmic pattern recognition receptors, has a multifaceted role in host resistance to bacterial infection. However, whether and how NLRP6 may contribute to regulate host PCD during Gram-negative bacterial infection remain to be illuminated. Here, we report that NLRP6 promotes RIP1 kinase-mediated necroptosis, a form of lytic PCD, in both an in vitro and in vivo model of Salmonella typhimurium infection. By downregulating TAK1-mediated p38MAPK/MK2 phosphorylation, NLRP6 decreased RIP1 phosphorylation at residue S321 and subsequently increased RIP1 kinase-dependent MLKL phosphorylation. Suppression of p38MAPK/MK2 cascade not only reduced the number of dead cells caused by NLRP6 but also decreased the systemic dissemination of S. typhimurium resulting from NLRP6. Taken together, our findings provide new insights into the role and regulatory mechanism of NLRP6-associated antimicrobial responses by revealing a function for NLRP6 in regulating necroptosis.

Non-typhoidal Salmonella infection is among the most frequent foodborne diseases threatening human health worldwide. The host circadian clock orchestrates daily rhythms to adapt to environmental changes, including coordinating immune function in response to potential infections. However, the molecular mechanisms underlying the interplay between the circadian clock and the immune system in modulating infection processes are incompletely understood. Here, we demonstrate that NLRP6, a novel nucleotide-oligomerization domain (NOD)-like receptor (NLR) family member highly expressed in the intestine, is closely associated with the differential day–night response to Salmonella infection. The core clock component REV-ERBα negatively regulates NLRP6 transcription, leading to the rhythmic expression of NLRP6 and the secretion of IL-18 in intestinal epithelial cells, playing a crucial role in mediating the differential day–night response to Salmonella infection. Activating REV-ERBα with agonist SR9009 in wild-type mice attenuated the severity of infection by decreasing the NLRP6 level in intestinal epithelial cells. Our findings provide new insights into the association between the host circadian clock and the immune response to enteric infections by revealing the regulation of Salmonella infection via the inhibitory effect of REV-ERBα on NLRP6 transcription. Targeting REV-ERBα to modulate NLRP6 activation may be a potential therapeutic strategy for bacterial infections.

Viral infection-induced cell death has long been considered as a double-edged sword in the inhibition or exacerbation of viral infections. Patients with severe Coronavirus Disease 2019 (COVID-19) are characterized by multiple organ dysfunction syndrome and cytokine storm, which may result from SARS-CoV-2-induced cell death. Previous studies have observed enhanced ROS level and signs of ferroptosis in SARS-CoV-2 infected cells or specimens of patients with COVID-19, but the exact mechanism is not clear yet. Here, we find SARS-CoV-2 ORF3a sensitizes cells to ferroptosis via Keap1-NRF2 axis. SARS-CoV-2 ORF3a promotes the degradation of NRF2 through recruiting Keap1, thereby attenuating cellular resistance to oxidative stress and facilitated cells to ferroptotic cell death. Our study uncovers that SARS-CoV-2 ORF3a functions as a positive regulator of ferroptosis, which might explain SARS-CoV-2-induced damage in multiple organs in COVID-19 patients and imply the potential of ferroptosis inhibition in COVID-19 treatment.

The narrow bandgap of the low-energy near-infrared (NIR) polymer would lead to overlap between adjacent energy levels, which is a major barrier to the preparation of Vis-NIR polymer bulk heterojunction (BHJ) photodetectors with small responsivity and photocurrent. In this study, a high-performance lateral inorganic-organic hybrid photodetector was constructed to eliminate this barrier by combining GaN nanowires (GaN-NWs) with PDPP3T:PC61BM-based BHJ. In stage one, high-quality GaN-NWs were synthesized by the catalyst-free CVD method. The mechanism for controlling GaN-NWs morphology by adjusting the NH3 flow rate was revealed. In stage two, the GaN-NWs with large electron mobility were used to accelerate the transfer of photogenerated carriers in the BHJ layer. Finally, compared with the BHJ device, the BHJ/GaN device demonstrated obvious improvements in responsivity and photocurrent at the wavelength between 400 and 1000 nm. The responsivity and photocurrent increased over 20-fold at the NIR band of 800–900 nm. Besides, owing to the energy level gradient effect, the BHJ/GaN device has a response speed of 7.8/

Classic studies of marine overexploitation traditionally analyze cases of “fishing down the food web”: turning to smaller species at lower trophic levels after depleting the larger top predators. Much less documented, however, is the preceding phase in which higher trophic level species, previously not exploited or consumed locally, are increasingly added to the catch. Worldwide, this phase happened centuries ago due to technological developments and thus passed before scientific scrutiny and conservation awareness arose, leaving it largely unstudied. Here, we combine a historical reconstruction of fishery with a relatively recent fishing monitoring program to document this early phase in the Parc National du Banc d’Arguin in Mauritania, a marine protected area in Mauritania, West Africa. Long-term trends in mean trophic level of exploited species and total catches provide evidence for an increasing fishing pressure toward the top of the food web, and suggest that the state of “fishing down the food web” is now happening in this ecosystem. This involves the recent intensive targeting of rays and sharks. We show that their contribution to the local economy is marginal compared with the traditionally fished species.

Abstract Salmonella is one of the most important worldwide zoonotic pathogens. After invading a host orally, the bacteria break through the intestinal epithelial barrier for further invasion. Intestinal epithelial cells (IECs) play a crucial role in maintaining the integrity of the intestinal epithelial barrier. Necroptosis is considered one of the virulence strategies utilized by invasive Salmonella. Our previous work has shown that SpvB, an effector encoded by S. Typhimurium virulence plasmid (pSLT), promotes bacterial translocation via the paracellular route. However, it is still unknown whether SpvB could promote bacterial invasion through disrupting the integrity of IECs. Here, we demonstrated that SpvB promoted necroptosis of IECs and contributed to the destruction of the intestinal barrier during Salmonella infection. We found that SpvB enhanced the protein level of receptor-interacting protein kinase 3 (RIPK3) through inhibiting K48-linked poly-ubiquitylation of RIPK3 and the degradation of the protein in an autophagy-dependent manner. The abundant accumulation of RIPK3 upregulated the phosphorylation of MLKL, which contributed to necroptosis. The damage to IECs ultimately led to the disruption of the intestinal barrier and aggravated infection. In vivo, SpvB promoted the pathogenesis of Salmonella, favoring intestinal injury and colonic necroptosis. Our findings reveal a novel function of Salmonella effector SpvB, which could facilitate salmonellosis by promoting necroptosis, and broaden our understanding of the molecular mechanisms of bacterial invasion.

This paper proposes an efficient method for active unsupervised texture segmentation. A new descriptor for texture features extractions based on Gaussian and mean curvature is constructed. Then the optimization of a functional who uses the R´enyi divergence measure and our descriptor is proposed in order to design an active contour model for texture segmentation. To get a global solution and efficient, fast algorithm, the optimization problem is redefined. The algorithm associated with this last optimization problem avoids local minimums and the run-time consuming compared to the level-set representation of our active contour model. In order to illustrate the performance of the technique, some results are presented showing the effectiveness and robustness of our approach.

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was initially described to target the respiratory system and now has been reported to infect a variety of cell types, including cardiomyocytes, neurons, hepatocytes, and gut enterocytes. However, it remains unclear whether the virus can directly infect human embryonic stem cells (hESCs) or early embryos. Herein, we sought to investigate this question in a cell-culture system of hESCs. Both the RNA and S protein of SARS-CoV-2 were detected in the infected hESCs and the formation of syncytium was observed. The increased level of subgenomic viral RNA and the presence of dsRNA indicate active replication of SARS-CoV-2 in hESCs. The increase of viral titers in the supernatants revealed virion release, further indicating the successful life cycle of SARS-CoV-2 in hESCs. Remarkably, immunofluorescence microscopy showed that only a small portion of hESCs were infected, which may reflect low expression of SARS-CoV-2 receptors. By setting |log2 (fold change)| > 0.5 as the threshold, a total of 1,566 genes were differentially expressed in SARS-CoV-2-infected hESCs, among which 17 interferon-stimulated genes (ISGs) were significantly upregulated. Altogether, our results provide novel evidence to support the ability of SARS-CoV-2 to infect and replicate in hESCs.

Maintaining host iron homeostasis is an essential component of nutritional immunity responsible for sequestrating iron from pathogens and controlling infection. Nucleotide-oligomerization domain-like receptors (NLRs) contribute to cytoplasmic sensing and antimicrobial response orchestration. However, it remains unknown whether and how NLRs may regulate host iron metabolism, an important component of nutritional immunity. Here, we demonstrated that NLRP6, a member of the NLR family, has an unconventional role in regulating host iron metabolism that perturbs host resistance to bacterial infection. NLRP6 deficiency is advantageous for maintaining cellular iron homeostasis in both macrophages and enterocytes through increasing the unique iron exporter ferroportin-mediated iron efflux in a nuclear factor erythroid-derived 2–related factor 2 (NRF2)-dependent manner. Additional studies uncovered a novel mechanism underlying NRF2 regulation and operating through NLRP6/AKT interaction and that causes a decrease in AKT phosphorylation, which in turn reduces NRF2 nuclear translocation. In the absence of NLRP6, increased AKT activation promotes NRF2/KEAP1 dissociation via increasing mTOR-mediated p62 phosphorylation and downregulates KEAP1 transcription by promoting FOXO3A phosphorylation. Together, our observations provide new insights into the mechanism of nutritional immunity by revealing a novel function of NLRP6 in regulating iron metabolism, and suggest NLRP6 as a therapeutic target for limiting bacterial iron acquisition.