189 results on '"Silvia Jimenez"'
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2. P1264: A PREDEFINED STRATEGY AIMED TO REDUCE ANTIBIOTIC EXPOSURE OF SCT RECIPIENTS PRESERVES DIVERSITY AND COMPOSITION OF INTESTINAL MICROBIOTA AND REDUCES THE INCIDENCE OF ACUTE-GVHD WITHOUT SIDE EFFECTS
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Ildefonso Espigado, Nancy Rodríguez-Torres, Silvia Jimenez-Jorge, Lucrecia Yáñez Sansegundo, Lourdes Vázquez López, Carlos Solano, MI Kwon, Manuela Aguilar-Guisado, Sara Fernández-Luis, Alejandro Avendaño Pita, Ariadna Perez-Martinez, Rebeca Bailén, Gema Labrador Herrera, Nazaret Domínguez-Velasco, Laura de la Torre-Corona, Francisco José Márquez-Malaver, Carmen Limón Ramos, Julio Cerrillo Matilla, Clara María Rosso-Fernández, Claudio Alba, Jose Antonio Pérez-Simón, and María Eugenia Pachón Ibáñez
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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3. Extended Weighted ABG: A Robust Non-Linear ABG-Based Approach for Optimal Combination of ABG Path-Loss Propagation Models
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David Casillas-Perez, Daniel Merino-Perez, Silvia Jimenez-Fernandez, Jose A. Portilla-Figueras, and Sancho Salcedo-Sanz
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5G ,path-loss ,mmWave ,ABG propagation models ,non-linear models combination ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
This paper proposes a robust non-linear generalized path-loss propagation model, the Extended Weighted ABG (EWABG), which efficiently allows generating a path-loss propagation model by combining several available path-loss datasets (from measurements campaigns) and other previously proposed state-of-the-art 5G path-loss propagation models. The EWABG model works by integrating individual path-loss models into one single model in the least-squares sense, allowing to extend knowledge from frequencies and distances covered by path-loss datasets or path-loss propagation models. The proposed EWABG model is the first non-linear extension of the common ABG-based approach, which surpasses the non-uniformity problem between the low and high 5G frequencies (as most measurements campaigns have taken place in low frequencies). The EWABG also addresses the problem of removing outlier measurements, a step not included in previous propagation path-loss models. In this case, we have compared the most recent techniques for avoiding outliers, and we have adopted the Theil-Sen method, due to its strong robustness demonstrated in the experiments carried out. In addition, the proposed model specifically considers non-linear attenuation by atmospheric gases, in order to improve its estimations. The good performance of the proposed EWABG model has been tested and compared against recent 5G propagation path-loss models including the ABG and WABG models. The exhaustive experimentation carried out includes the 5G non-line-of-sight environment in different 5G scenarios, UMiSC, UMiOS and UMa. The proposed EWABG obtains the best accuracy, specially in noisy environments with outliers, reporting negligible increment error rates (with respect to the non-outliers situation), lower than 1%, compared to the ABG and WABG.
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- 2022
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4. An Improved C-DEEPSO Algorithm for Optimal Active-Reactive Power Dispatch in Microgrids With Electric Vehicles
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Carolina Gil Marcelino, Gabriel Matos Cardoso Leite, Silvia Jimenez-Fernandez, and Sancho Salcedo-Sanz
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Energy efficiency ,optimal power flow ,microgrids ,swarm intelligence ,C-DEEPSO ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
In the last years, our society’s high energy demand has led to the proposal of novel ways of consuming and producing electricity. In this sense, many countries have encouraged micro generation, including the use of renewable sources such as solar irradiation and wind generation, or considering the insertion of electric vehicles as dispatchable units on the grid. This work addresses the Optimal active–reactive power dispatch (OARPD) problem (a type of optimal power flow (OPF) task) in microgrids considering electric vehicles. We used the modified IEEE 57 and IEEE 118 bus-systems test scenarios, in which thermoelectric generators were replaced by renewable generators. In particular, under the IEEE 118 bus system, electric vehicles were integrated into the grid. To solve the OARDP problem, we proposed the use and improvement of the Canonical Differential Evolutionary Particle Swarm Optimization (C-DEEPSO) algorithm. For further refinement in the search space, C-DEEPSO relies on local search operators. The results indicated that the proposed improved C-DEEPSO was able to show generation savings (in terms of millions of dollars) acting as a dispatch controller against two algorithms based on swarm intelligence.
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- 2022
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5. Adolescencia y violencia de género en línea: revisión comparativa entre Costa Rica, México y España
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Amaia García Andrés, Fannella Giusti Minotre, and Silvia Jimenez Mata
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Adolescencia ,Violencia ,Tecnología de la comunicación ,Feminismo ,Sociology (General) ,HM401-1281 - Abstract
Las personas adolescentes son susceptibles a los cambios que introdujo la revolución tecnológica. Desde temprana edad incorporan el uso de las TICs en su cotidianidad, convirtiéndose en uno de los principales medios para comunicarse, socializar y explorar, en ocasiones en condiciones peligrosas. Así, empiezan a establecer sus primeras relaciones de pareja en las que en ocasiones trasladan al espacio virtual comportamientos que son expresiones de la violencia estructural de género. Los avances en la comprensión de esta forma de violencia son limitados, es por ello que con este artículo se busca visibilizar los alcances y vacíos en el reconocimiento de la violencia de género en línea (VGL), por medio de la revisión de fuentes secundarias y tomando como referencia las líneas de investigación y abordajes normativos y formativos en tres países: Costa Rica, México y España. Esta investigación se realiza en el marco del proyecto “Tecnologías y violencia de género en las relaciones de pareja de adolescentes” del Instituto de Estudios de la Mujer, Universidad Nacional de Costa Rica (UNA). Dentro de los hallazgos se evidencia que la violencia de género en línea es un problema que se reconoce recientemente, aunque en la región latinoamericana no ha ido acompañado de la definición de políticas públicas claras que orienten su abordaje.
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- 2022
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6. NK cells with decreased expression of multiple activating receptors is a dominant phenotype in pediatric patients with acute lymphoblastic leukemia
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Lucero Valenzuela-Vázquez, Juan Carlos Nuñez-Enriquez, Jacqueline Sánchez-Herrera, Aurora Medina-Sanson, María Luisa Pérez-Saldivar, Elva Jiménez-Hernández, Jorge Alfonso Martiín-Trejo, María de Los Ángeles Del Campo-Martínez, Janet Flores-Lujano, Raquel Amador-Sánchez, Félix Gustavo Mora-Ríos, José Gabriel Peñaloza-González, David Aldebarán Duarte-Rodríguez, José Refugio Torres-Nava, Rosa Martha Espinosa-Elizondo, Beatriz Cortés-Herrera, Luz Victoria Flores-Villegas, Laura Elizabeth Merino-Pasaye, Carolina Almeida-Hernández, Rosario Ramírez-Colorado, Karina Anastacia Solís-Labastida, Francisco Medrano-López, Jessica Arleet Pérez-Gómez, Martha Margarita Velázquez-Aviña, Annel Martínez-Ríos, Antonio Aguilar-De los Santos, Jessica Denisse Santillán-Juárez, Alma Gurrola-Silva, Alejandra Jimena García-Velázquez, Minerva Mata-Rocha, Gabriela Alicia Hernández-Echáurregui, Omar Alejandro Sepúlveda-Robles, Haydeé Rosas-Vargas, Ismael Mancilla-Herrera, Silvia Jimenez-Morales, Alfredo Hidalgo-Miranda, Ivan Martinez-Duncker, Jeremy D. Waight, Kenneth W. Hance, Kevin P. Madauss, Juan Manuel Mejía-Aranguré, and Mario Ernesto Cruz-Munoz
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NK cells ,acute lymphoblastic leukemia ,immunooncology ,cancer ,immune system ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
NK cells have unique attributes to react towards cells undergoing malignant transformation or viral infection. This reactivity is regulated by activating or inhibitory germline encoded receptors. An impaired NK cell function may result from an aberrant expression of such receptors, a condition often seen in patients with hematological cancers. Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer worldwide and NK cells have emerged as crucial targets for developing immunotherapies. However, there are important gaps concerning the phenotype and behavior of NK cells during emergence of ALL. In this study we analyze the phenotype and function of NK cells from peripheral blood in pediatric patients with ALL at diagnosis. Our results showed that NK cells exhibited an altered phenotype highlighted by a significant reduction in the overall expression and percent representation of activating receptors compared to age-matched controls. No significant differences were found for the expression of inhibitory receptors. Moreover, NK cells with a concurrent reduced expression in various activating receptors, was the dominant phenotype among patients. An alteration in the relative frequencies of NK cells expressing NKG2A and CD57 within the mature NK cell pool was also observed. In addition, NK cells from patients displayed a significant reduction in the ability to sustain antibody-dependent cellular cytotoxicity (ADCC). Finally, an aberrant expression of activating receptors is associated with the phenomenon of leukemia during childhood.
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- 2022
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7. Weighted ABG: A General Framework for Optimal Combination of ABG Path-Loss Propagation Models
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David Casillas-Perez, Carlos Camacho-Gomez, Silvia Jimenez-Fernandez, Jose A. Portilla-Figueras, and Sancho Salcedo-Sanz
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5G ,path-loss ,mmWave ,ABG propagation models ,models combination ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
In this paper we propose a novel path-loss model, the Weighted ABG (WABG), which suitably allows integrating or combine different available datasets, or previously proposed 5G propagation path-loss models from the state-of-the-art. Our proposal is therefore a new ABG-based approach which integrates other existing models, leading to the best possible approximation in least-square sense, considering different weighting policies. We evaluate the performance of the WABG in several 5G scenarios, and we carry out a complete comparison of the proposed method against several recently published ABG models, showing that the WABG obtains the best results in terms of model's accuracy.
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- 2020
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8. Homogenization of high-contrast dielectric elastomer composites
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Dang, Thuyen, Gorb, Yuliya, and Bolaños, Silvia Jiménez
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Mathematics - Analysis of PDEs ,35B27, 35J47, 74A40, 74F15 - Abstract
This paper focuses on the homogenization of high-contrast dielectric elastomer composites, materials that deform in response to electrical stimulation. The considered heterogeneous material consisting of an ambient material with inserted particles is described by a weakly coupled system of an electrostatic equation with an elastic equation enriched with electrostriction. It is assumed that particles gradually become rigid as the fine-scale parameter approaches zero. This study demonstrates that the effective response of this system entails a homogeneous dielectric elastomer, described by a weakly coupled system of PDEs. The coefficients of the homogenized equations are dependent on various factors, including the composite's geometry, the original microstructure's periodicity, and the coefficients characterizing the initial heterogeneous material. Particularly, these coefficients are significantly influenced by the high-contrast nature of the fine-scale problem's coefficients. Consequently, as anticipated, the high-contrast coefficients of the original yield non-local effects in the homogenized response., Comment: arXiv admin note: text overlap with arXiv:2304.01033
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- 2024
9. Explicit corrector in homogenization of monotone operators and its application to nonlinear dielectric elastomer composites
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Dang, Thuyen, Gorb, Yuliya, and Bolanos, Silvia Jimenez
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Mathematics - Analysis of PDEs ,35B27, 74E30, 74F10, 76M50, 78M40 - Abstract
This paper concerns the rigorous periodic homogenization for a weakly coupled electroelastic system of a nonlinear electrostatic equation with an elastic equation enriched with electrostriction. Such coupling is employed to describe dielectric elastomers or deformable (elastic) dielectrics. It is shown that the effective response of the system consists of a homogeneous dielectric elastomer described by a nonlinear weakly coupled system of PDEs whose coefficients depend on the coefficients of the original heterogeneous material, the geometry of the composite and the periodicity of the original microstructure. The approach developed here for this nonlinear problem allows obtaining an explicit corrector result for the homogenization of monotone operators with minimal regularity assumptions. Two $L^p-$gradient estimates for elastic systems with discontinuous coefficients are also obtained., Comment: We provide a new proof to extend the explicit first-order corrector result in the first version of this paper. The new explicit corrector result (cf. Theorem 1) holds globally and unifies the previous classical correct results in homogenization of the divergence equation (both linear and nonlinear). New references are added. Comments are welcome!
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- 2023
10. Reduced prevalence of oral human papillomavirus (HPV) 4 years after bivalent HPV vaccination in a randomized clinical trial in Costa Rica.
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Rolando Herrero, Wim Quint, Allan Hildesheim, Paula Gonzalez, Linda Struijk, Hormuzd A Katki, Carolina Porras, Mark Schiffman, Ana Cecilia Rodriguez, Diane Solomon, Silvia Jimenez, John T Schiller, Douglas R Lowy, Leen-Jan van Doorn, Sholom Wacholder, Aimée R Kreimer, and CVT Vaccine Group
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Medicine ,Science - Abstract
Human papillomavirus (HPV) infection, particularly with type 16, causes a growing fraction of oropharyngeal cancers, whose incidence is increasing, mainly in developed countries. In a double-blind controlled trial conducted to investigate vaccine efficacy (VE) of the bivalent HPV 16/18 vaccine against cervical infections and lesions, we estimated VE against prevalent oral HPV infections 4 years after vaccination.A total of 7,466 women 18-25 years old were randomized (1∶1) to receive the HPV16/18 vaccine or hepatitis A vaccine as control. At the final blinded 4-year study visit, 5,840 participants provided oral specimens (91·9% of eligible women) to evaluate VE against oral infections. Our primary analysis evaluated prevalent oral HPV infection among all vaccinated women with oral and cervical HPV results. Corresponding VE against prevalent cervical HPV16/18 infection was calculated for comparison. Oral prevalence of identifiable mucosal HPV was relatively low (1·7%). Approximately four years after vaccination, there were 15 prevalent HPV16/18 infections in the control group and one in the vaccine group, for an estimated VE of 93·3% (95% CI = 63% to 100%). Corresponding efficacy against prevalent cervical HPV16/18 infection for the same cohort at the same visit was 72·0% (95% CI = 63% to 79%) (p versus oral VE = 0·04). There was no statistically significant protection against other oral HPV infections, though power was limited for these analyses.HPV prevalence four years after vaccination with the ASO4-adjuvanted HPV16/18 vaccine was much lower among women in the vaccine arm compared to the control arm, suggesting that the vaccine affords strong protection against oral HPV16/18 infection, with potentially important implications for prevention of increasingly common HPV-associated oropharyngeal cancer. ClinicalTrials.gov, Registry number NCT00128661.
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- 2013
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11. Homogenization of a non-linear strongly coupled model of magnetorheological fluids
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Dang, Thuyen, Gorb, Yuliya, and Bolaños, Silvia Jiménez
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Mathematics - Analysis of PDEs ,35B27, 74E30, 74F10, 76M50, 78M40 - Abstract
This paper concerns the rigorous periodic homogenization for a non-linear strongly coupled system, which models a suspension of magnetizable rigid particles in a non-conducting carrier viscous Newtonian fluid. The fluid drags the particles, thus alters the magnetic field. Vice versa, the magnetic field acts on the particles, which in turn affect the fluid via the no-slip boundary condition. As the size of the particles approaches zero, it is shown that the suspension's behavior is governed by a generalized magnetohydrodynamic system, where the fluid is modeled by a stationary Navier-Stokes system, while the magnetic field is modeled by Maxwell equations. A corrector result from the theory of two-scale convergence allows us to obtain the limit of the product of several weakly convergent sequences, where the div-curl lemma, which is a typical tool in these types of problems, is not applicable., Comment: Fix typos, and improve exposition
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- 2021
12. Homogenization for a Variational Problem with a Slip Interface Condition
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Ou, Miao-jung Yvonne and Bolaños, Silvia Jiménez
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Mathematics - Analysis of PDEs - Abstract
Inspired by applications, we study the effect of interface slip on the effective wave propagation in poroelastic composites. The current literature on the homogenization for the poroelastic wave equations are all based on the no-slip interface condition posed on the micro-scale. However, for certain pore fluids, the no-slip conditions are known to be physically invalid. Even though there are results in a few papers regarding porous media with slip condition on the interface, they are for porous media with rigid solid matrix rather than an elastic one. For the former case, the equations for the micro-scale are posed only in the pore space and the slip on the interface involves only the fluid velocity and the fluid stress. For the latter case, both the fluid equations and the elastic equations are posed in the respective phases and the slip conditions involve the velocities on both sides of the interface, rather than just the fluid side. With this slip condition, a variational boundary value problem governing the small vibrations of a periodic mixture of an elastic solid and a slightly viscous fluid is studied in the paper. The method of two-scale convergence is used to obtain the macroscopic behavior of the solution and to identify the role played by the slip interface condition.
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- 2021
13. Bloch Waves in High Contrast Electromagnetic Crystals
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Lipton, Robert, Viator, Robert, Bolanos, Silvia Jimenez, and Adili, Abiti
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Mathematics - Analysis of PDEs ,Physics - Optics - Abstract
Analytic representation formulas and power series are developed describing the band structure inside non-magnetic periodic photonic three-dimensional crystals made from high dielectric contrast inclusions. Central to this approach is the identification and utilization of a resonance spectrum for quasiperiodic source-free modes. These modes are used to represent solution operators associated with electromagnetic and acoustic waves inside periodic high contrast media. A convergent power series for the Bloch wave spectrum is recovered from the representation formulas. Explicit conditions on the contrast are found that provide lower bounds on the convergence radius. These conditions are sufficient for the separation of spectral branches of the dispersion relation for any fixed quasi-momentum., Comment: arXiv admin note: text overlap with arXiv:1512.06062, arXiv:1607.02365, arXiv:2110.08405
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- 2021
14. Análisis y detección de adulteraciones en algunas drogas en polvo comerciales
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Silvia Jimenez R., Maria Rubiela Uribe, Gilma N. Ruiz, and Rosa E. Restrepo
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Food processing and manufacture ,TP368-456 ,Pharmaceutical industry ,HD9665-9675 - Published
- 2009
15. Global gradient estimate for a divergence problem and its application to the homogenization of a magnetic suspension
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Dang, Thuyen, Gorb, Yuliya, and Bolanos, Silvia Jimenez
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Mathematics - Analysis of PDEs - Abstract
This paper generalizes the results obtained by the authors in \cite{dangHomogenizationNondiluteSuspension2021} concerning the homogenization of a non-dilute suspension of magnetic particles in a viscous flow. More specifically, in this paper, a restrictive assumption on the coefficients of the coupled equation, made in \cite{dangHomogenizationNondiluteSuspension2021}, that significantly narrowed the applicability of the homogenization results obtained, is relaxed and a new regularity of the solution of the fine-scale problem is proven. In particular, we obtain a global $L^{\infty}$-bound for the gradient of the solution of the scalar equation $-\mathrm{div} \left[ \mathbf{a} \left( x/\varepsilon \right)\nabla \varphi^{\varepsilon}(x) \right] = f(x)$, uniform with respect to microstructure scale parameter $\varepsilon\ll 1$ in a small interval $(0,\varepsilon_0)$, where the coefficient $\mathbf{a}$ is only \emph{piecewise} H\"{o}lder continuous. Thenceforth, this regularity is used in the derivation of the effective response of the given suspension discussed in \cite{dangHomogenizationNondiluteSuspension2021}., Comment: 24 pages, 2 figures, accepted version
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- 2021
16. Homogenization of Non-dilute Suspension of Viscous Fluid with Magnetic Particles
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Dang, Thuyen, Gorb, Yuliya, and Bolanos, Silvia Jimenez
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Mathematics - Analysis of PDEs - Abstract
This paper seeks to carry out the rigorous homogenization of a particulate flow consisting of a non-dilute suspension of a viscous Newtonian fluid with magnetizable particles. The fluid is assumed to be described by the Stokes flow, while the particles are either paramagnetic or diamagnetic, for which the magnetization field is a linear function of the magnetic field. The coefficients of the corresponding partial differential equations are locally periodic. A one-way coupling between the fluid domain and the particles is also assumed. The homogenized or effective response of such a suspension is derived, and the mathematical justification of the obtained asymptotics is carried out. The two-scale convergence method is adopted for the latter. As a consequence, the presented result provides a justification for the formal asymptotic analysis of L\'{e}vy and Sanchez-Palencia for particulate steady-state Stokes flows., Comment: 21 pages, minor revision based on reviewers' comments
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- 2021
17. Antibiotic use and outcome in patients with negative blood cultures, a new target population for antimicrobial stewardship interventions: A prospective multicentre cohort (NO-BACT)
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Girón-Ortega, José Antonio, Fernández-Guerrero, Raquel, de Oca Arjona, Montserrat Montes, Galán-Sanchez, Fátima, Sagastizábal, Galadriel Pellejero, Romea, Elena Morte, de Cueto, Marina, Garcia, Margarita Beltrán, Palacios-Baena, Zaira, Jorge, Silvia Jiménez, Rodríguez-Baño, Jesús, and Retamar-Gentil, Pilar
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- 2024
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18. Dimension reduction for thin films prestrained by shallow curvature
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Bolanos, Silvia Jimenez and Lewicka, Marta
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Mathematics - Analysis of PDEs - Abstract
We are concerned with the dimension reduction analysis for thin three-dimensional elastic films, prestrained via Riemannian metrics with weak curvatures. For the prestrain inducing the incompatible version of the F\"oppl-von K\'arm\'an equations, we find the $\Gamma$-limits of the rescaled energies, identify the optimal energy scaling laws, and display the equivalent conditions for optimality in terms of both the prestrain components and the curvatures of the related Riemannian metrics. When the stretching-inducing prestrain carries no in-plane modes, we discover similarities with the previously described shallow shell models. In higher prestrain regimes, we prove new energy upper bounds by constructing deformations as the Kirchhoff-Love extensions of the highly perturbative, H\"older-regular solutions to the Monge-Ampere equation obtained by means of convex integration.
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- 2020
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19. Thermochemical valorization of greenhouse cucumber, tomato and pepper as biofuel
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Pinna-Hernández, M. Guadalupe, Díaz Villanueva, Manuel J., Cortés-Izurdiaga, Manuel, Becker, Silvia Jiménez, Casas López, José Luis, and Acien Fernández, Francisco Gabriel
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- 2023
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20. Relative Bending Energy for Weakly Prestrained Shells
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Bolanos, Silvia Jimenez and Zemlaynova, Anna
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Mathematics - Analysis of PDEs - Abstract
In this paper, we derive a dimensionally reduced model for a thin film prestrained with a given incompatible Riemannian metric: $$G^h(x',x_3)=I_3+2h^{\gamma}\,S(x')+2h^{\gamma/2}\,x_3B(x')+h.o.t, \,\,\,\gamma>2,$$ where $0
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- 2019
21. Global Gradient Estimate for a Divergence Problem and Its Application to the Homogenization of a Magnetic Suspension
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Dang, Thuyen, Gorb, Yuliya, Bolaños, Silvia Jiménez, Lauter, Kristin, Series Editor, Español, Malena I., editor, Lewicka, Marta, editor, Scardia, Lucia, editor, and Schlömerkemper, Anja, editor
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- 2022
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22. Blue Brain Knowledge Graph: Leveraging Semantic Web Technologies for Simulation Neuroscience.
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Cristina E. Gonzalez-Espinoza, Anna-Kristin Kaufmann, Eugenia Oshurko, Alejandra Garcia Rojas Martinez, Sarah Mouffok, Konstantinos Platis, Jonathan Lurie, Jayakrishnan Nair, Patrycja Lurie, Silvia Jimenez, Pierre-Alexandre Fonta, Huanxiang Lu, Nabil Alibou, Mohameth-François Sy, Bogdan Roman, Samuel Kerrien, Henry Markram, and Sean L. Hill
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- 2023
23. On the Dimension Reduction in Prestrained Elasticity (Survey)
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Bolaños, Silvia Jiménez, Lauter, Kristin, Series Editor, Acu, Bahar, editor, Danielli, Donatella, editor, Lewicka, Marta, editor, Pati, Arati, editor, Saraswathy RV, editor, and Teboh-Ewungkem, Miranda, editor
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- 2020
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24. Nonlinear Neutral Inclusions: Assemblages of Coated Ellipsoids
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Bolaños, Silvia Jiménez and Vernescu, Bogdan
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Mathematics - Analysis of PDEs - Abstract
The problem of determining nonlinear neutral inclusions in (electrical or thermal)conductivity is considered. Neutral inclusions, inserted in a matrix containing a uniform applied electric field, do not disturb the field outside the inclusions. The well known Hashin coated sphere construction is an example of a neutral inclusion. In this paper, we consider the problem of constructing neutral inclusions from nonlinear materials. In particular, we discuss assemblages of coated ellipsoids.
- Published
- 2014
25. Blue Brain Nexus: An open, secure, scalable system for knowledge graph management and data-driven science
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Mohameth François Sy, Bogdan Roman, Samuel Kerrien, Didac Montero Mendez, Henry Genet, Wojciech Wajerowicz, Michaël Dupont, Ian Lavriushev, Julien Machon, Kenneth Pirman, Dhanesh Neela Mana, Natalia Stafeeva, Anna-Kristin Kaufmann, Huanxiang Lu, Jonathan Lurie, Pierre-Alexandre Fonta, Alejandra Garcia Rojas Martinez, Alexander D. Ulbrich, Carolina Lindqvist, Silvia Jimenez, David Rotenberg, Henry Markram, and Sean L. Hill
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Computer Networks and Communications ,Computer Science Applications ,Information Systems - Abstract
Modern data-driven science often consists of iterative cycles of data discovery, acquisition, preparation, analysis, model building and validation leading to knowledge discovery as well as dissemination at scale. The unique challenges of building and simulating the whole rodent brain in the Swiss EPFL Blue Brain Project (BBP) required a solution to managing large-scale highly heterogeneous data, and tracking their provenance to ensure quality, reproducibility and attribution throughout these iterative cycles. Here, we describe Blue Brain Nexus (BBN), an ecosystem of open source, domain agnostic, scalable, extensible data and knowledge graph management systems built by BBP to address these challenges. BBN builds on open standards and interoperable semantic web technologies to enable the creation and management of secure RDF-based knowledge graphs validated by W3C SHACL. BBN supports a spectrum of (meta)data modeling and representation formats including JSON and JSON-LD as well as more formally specified SHACL-based schemas enabling domain model-driven runtime API. With its streaming event-based architecture, BBN supports asynchronous building and maintenance of multiple extensible indices to ensure high performance search capabilities and enable analytics. We present four use cases and applications of BBN to large-scale data integration and dissemination challenges in computational modeling, neuroscience, psychiatry and open linked data.
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- 2023
26. TUBERCULOUS PERICARDITIS: A RACE AGAINST TIME
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Chavez, Raul, primary, Toledo, Enma, additional, Flores, David Francisco Hernandez, additional, Becerra, Silvia Jimenez, additional, Alexandro, Franco Estrada, additional, and Rangel, Pamela Ramirez, additional
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- 2023
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27. Chlamydomonas sp. extract meliorates the growth and physiological responses of ‘Camarosa’ strawberry (Fragaria × ananassa Duch) under salinity stress
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Sahar Jalalian, Asghar Ebrahimzadeh, Seyed Morteza Zahedi, Silvia Jiménez Becker, Faezeh Hayati, Mohammad Bagher Hassanpouraghdam, and Farzad Rasouli
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Algae extract ,Foliar application ,Fruit quality ,Strawberry ,Stress tolerance ,Yield ,Medicine ,Science - Abstract
Abstract Microalgae like Chlamydomonas are beneficial organisms employed as biological stimulants to improve plants’ growth, fruit quality, and stress tolerance. In the current study, the effects of Chlamydomonas sp. foliar spraying (0, 20, and 40 ml L−1) were assayed on Camarosa strawberry plants under salinity stress (0, 40, and 80 mM NaCl). The results showed that the foliar application of Chlamydomonas extract influenced strawberry’s morphological, physiological, and biochemical characteristics under salinity stress. Foliar treatment of Chlamydomonas extract with and without salinity stress increased the leaf number and leaf area, the leaf relative water content, and photosynthetic pigments content. Moreover, the foliar application of Chlamydomonas extract decreased lipid peroxidation and hydrogen peroxide content and, on the other hand, enhanced the antioxidant enzymes activity (superoxide dismutase, guaiacol peroxidase, and peroxidase), phenolics, flavonoids, and anthocyanins content under salinity stress. For instance, the highest total antioxidant capacity was found in the plants foliar treated with 40 ml L−1 of Chlamydomonas algae extract under 80 mM salinity stress, which increased by 102.4% compared to the controls, as well as the highest total phenolic compounds and anthocyanin’s content were 30.22, and 7.2% more than the control plants, respectively. Overall, the foliar application of Chlamydomonas algae extracts, especially at a concentration of 20 ml L−1 enhanced the strawberry’s growth, yield, and physiological traits under saline conditions. The results with more detailed evaluations will be advisable for the pioneer farmers and extension section.
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- 2024
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28. Cost per response for abatacept versus adalimumab in rheumatoid arthritis by ACPA subgroups in Germany, Italy, Spain, US and Canada
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Weijers, Laure, Baerwald, Christoph, Mennini, Francesco S., Rodríguez-Heredia, José M., Bergman, Martin J., Choquette, Denis, Herrmann, Kirsten H., Attinà, Giulia, Nappi, Carmela, Merino, Silvia Jimenez, Patel, Chad, Mtibaa, Mondher, and Foo, Jason
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- 2017
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29. Comparing relative model fit of several species-accumulation functions to local Papilionoidea and Hesperioidea butterfly inventories of Mediterranean habitats
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Jiménez-Valverde, Alberto, Mendoza, Silvia Jiménez, Cano, José Martín, Munguira, Miguel L., Hawksworth, David L., editor, and Bull, Alan T., editor
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- 2006
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30. Solving the Optimal Active–Reactive Power Dispatch Problem in Smart Grids with the C-DEEPSO Algorithm
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Carolina G. Marcelino, Elizabeth F. Wanner, Flavio V. C. Martins, Jorge Perez-Aracil, Silvia Jimenez-Fernandez, and Sancho Salcedo-Sanz
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- 2022
31. TUBERCULOUS PERICARDITIS: A RACE AGAINST TIME
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Raul Chavez, Enma Toledo, David Francisco Hernandez Flores, Silvia Jimenez Becerra, Franco Estrada Alexandro, and Pamela Ramirez Rangel
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Cardiology and Cardiovascular Medicine - Published
- 2023
32. Whole Transcriptome Analysis in Mexican Children with High-Risk Acute Lymphoblastic Leukemia: A Preliminary Report from the Migiccl
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Diego Alberto Barcenas-Lopez, Juan Carlos Nuñez-Enriquez, Laura Lucila Gomez-Romero, Hugo Antonio Tovar-Romero, Elva Jimenez-Hernandez, Aurora Medina-Sanson, Jose Gabriel Peñaloza-Gonzalez, Luz Victoria Flores Villegas, Minerva Mata-Rocha, Haydee Rosas-Vargas, Alfredo Hidalgo-Miranda, Juan Manuel Mejia-Arangure, and Silvia Jimenez-Morales
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Published
- 2022
33. A Multi-objective Approach for the Menu Planning Problem: A Brazilian Case Study
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Rafaela P. C. Moreira, Carolina G. Marcelino, Flávio V. C. Martins, Elizabeth F. Wanner, Silvia Jimenez-Fernandez, and Sancho Salcedo-Sanz
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- 2022
34. Active GA Accelerated by Simulated Annealing to Solve SPP in Packet Networks
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Daniel S. Fonseca, Elizabeth F. Wanner, Carolina G. Marcelino, Gabriel P. Silva, Silvia Jimenez-Fernandez, and Sancho Salcedo-Sanz
- Published
- 2022
35. Giant right ventricle infiltrative lipoma—a surgical success report
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Mario Gómez-Sánchez, Michelle Mizrahi, Silvia Jimenez-Becerra, and Guillermo E Castro-Lozano
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Pulmonary and Respiratory Medicine ,Surgical resection ,medicine.medical_specialty ,Heart Ventricles ,030204 cardiovascular system & hematology ,Asymptomatic ,Resection ,Heart Neoplasms ,Young Adult ,03 medical and health sciences ,Heart neoplasms ,0302 clinical medicine ,medicine ,Humans ,Cardiac Surgical Procedures ,business.industry ,Lipoma ,medicine.disease ,medicine.anatomical_structure ,030228 respiratory system ,Ventricle ,Female ,Surgery ,Infiltrative lipoma ,Radiology ,Presentation (obstetrics) ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,business - Abstract
Benign primary cardiac tumours are rare, with lipomas accounting for
- Published
- 2020
36. TSHβX1 Splice Variant Expression and D2 Thr92Ala Polymorphism Analysis in Pregnant Women with Thyroid Diseases
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Maria Magdalena Garcia Fabila, Carlos Jhovani Perez Amado, Silvia Jimenez Morales, Araceli Amaya Chávez, Hugo Mendieta Zerón, and Yesica Maria Rodriguez Cortes
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business.industry ,Thyroid disease ,Thyroid ,Alternative splicing ,DIO2 ,Physiology ,medicine.disease ,medicine.anatomical_structure ,medicine ,TaqMan ,Polymorphism analysis ,Allele ,business ,Gene - Abstract
Thyroid diseases are pathologies that frequently affect pregnant women. The objective was to find out whether the expression of TSHβX1 splice variant and D2 Thr92Ala polymorphism in the DIO2 gene are associated with thyroid disease in pregnant women. It was a comparative, prospective clinical, and cross-sectional study. Ninety-two pregnant patients, of which 38 were normothyroid and 54 had thyroid disease, were included. The expression of the TSHβX1 splice variant was quantified by real-time PCR and the D2 Thr92Ala (rs225014 CT) polymorphism was genotyped using TaqMan probes. The TSHβX1 splice variant was detected in both groups without significant differences in the relative expression. The T allele was associated with the thyroid dysfunction (OR = 2.117, p = 0.0339). We confirmed the presence of the predicted TSHβX1, and our results suggest that 92Thr (rs225017T) allele is a risk factor to thyroid dysfunction in pregnant women.
- Published
- 2019
37. LncRNA SOX9-AS1 triggers a transcriptional program involved in lipid metabolic reprogramming, cell migration and invasion in triple-negative breast cancer
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Mireya Cisneros-Villanueva, Marco Antonio Fonseca-Montaño, Magdalena Ríos-Romero, César López-Camarillo, Silvia Jiménez-Morales, Elizabeth Langley, Alan Sajid Rosette-Rueda, Alberto Cedro-Tanda, Daniel Hernández-Sotelo, and Alfredo Hidalgo-Miranda
- Subjects
Medicine ,Science - Abstract
Abstract At the molecular level, triple-negative breast cancer (TNBC) is frequently categorized as PAM50 basal-like subtype, but despite the advances in molecular analyses, the clinical outcome for these subtypes is uncertain. Long non-coding RNAs (lncRNAs) are master regulators of genes involved in hallmarks of cancer, which makes them suitable biomarkers for breast cancer (BRCA) diagnosis and prognosis. Here, we evaluated the regulatory role of lncRNA SOX9-AS1 in these subtypes. Using the BRCA-TCGA cohort, we observed that SOX9-AS1 was significantly overexpressed in basal-like and TNBC in comparison with other BRCA subtypes. Survival analyzes showed that SOX9-AS1 overexpression was associated with a favorable prognosis in TNBC and basal-like patients. To study the functions of SOX9-AS1, we determined the expression levels in a panel of nine BRCA cell lines finding increased levels in MDA-MB-468 and HCC1187 TNBC. Using subcellular fractionation in these cell lines, we ascertained that SOX9-AS1 was located in the cytoplasmic compartment. In addition, we performed SOX9-AS1 gene silencing using two short-harping constructs, which were transfected in both cell models and performed a genome-wide RNA-seq analysis. Data showed that 351 lncRNAs and 740 mRNAs were differentially expressed in MDA-MB-468 while 56 lncRNAs and 100 mRNAs were modulated in HCC1187 cells (Log2FC 1.5, p.adj value
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- 2024
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38. Statistical analysis plan for the multicenter, open, randomized controlled clinical trial to assess the efficacy and safety of intravenous tirofiban vs aspirin in acute ischemic stroke due to tandem lesion, undergoing recanalization therapy by endovascular treatment (ATILA trial)
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Elena Zapata-Arriaza, Manuel Medina-Rodríguez, Francisco Moniche Álvarez, Asier de Albóniga-Chindurza, Marta Aguilar-Pérez, Leire Ainz-Gómez, Pablo Baena-Palomino, Aynara Zamora, Blanca Pardo-Galiana, Fernando Delgado-Acosta, Roberto Valverde Moyano, Elvira Jiménez-Gómez, Isabel Bravo Rey, Rafael Oteros Fernández, Irene Escudero-Martínez, Isabel Vielba-Gomez, Lluis Morales Caba, Jose Díaz Pérez, Estefania García Molina, Sonia Mosteiro, María del Mar Castellanos Rodrigo, Laura Amaya Pascasio, Carlos Hidalgo, María del Mar Freijo Guerrero, Eva González Díaz, Jose María Ramírez Moreno, Luis Fernández Prudencio, Mikel Terceño Izaga, Saima Bashir Viturro, Miguel Ángel Gamero-García, Silvia Jiménez Jorge, Clara Rosso Fernández, Joan Montaner, and Alejandro González García
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Protocol ,Stroke ,Tandem occlusion ,Statistics ,Antiplatelet therapy ,Medicine (General) ,R5-920 - Abstract
Abstract Rationale In-stent reocclusion after endovascular therapy has a negative impact on outcomes in acute ischemic stroke (AIS) due to tandem lesions (TL). Optimal antiplatelet therapy approach in these patients to avoid in-stent reocclusion is yet to be elucidated. Aims To assess efficacy and safety of intravenous tirofiban versus intravenous aspirin in patients undergoing MT plus carotid stenting in the setting of AIS due to TL. Sample size estimates Two hundred forty patients will be enrolled, 120 in every treatment arm. Methods and design A multicenter, prospective, randomized, controlled (aspirin group), assessor-blinded clinical trial will be conducted. Patients fulfilling the inclusion criteria will be randomized at MT onset to the experimental or control group (1:1). Intravenous aspirin will be administered at a 500-mg single dose and tirofiban at a 500-mcg bolus followed by a 200-mcg/h infusion during the first 24 h. All patients will be followed for up to 3 months. Study outcomes Primary efficacy outcome will be the proportion of patients with carotid in-stent thrombosis within the first 24 h after MT. Primary safety outcome will be the rate of symptomatic intracranial hemorrhage. Discussion This will be the first clinical trial to assess the best antiplatelet therapy to avoid in-stent thrombosis after MT in patients with TL. Trial registration The trial is registered as NCT05225961. February, 7th, 2022.
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- 2024
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39. Shiver Motion and Core Body Temperature Classification for Wearable Soldier Health Monitoring Systems.
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Michael Sung, Richard W. DeVaul, Silvia Jimenez, Jonathan Gips, and Alex Pentland
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- 2004
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40. Temas actuales en psicoanálisis contemporáneo
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Alejandro Ávila Espada, María D. Cabrelles Sanz, Luis Raimundo Guerra Cid, Silvia Jiménez Torres, Carlos Rodríguez Sutil, Francesc Sáinz Bermejo, Sandra Toribio Caballero, Rosa Velasco, Alejandro Ávila Espada, María D. Cabrelles Sanz, Luis Raimundo Guerra Cid, Silvia Jiménez Torres, Carlos Rodríguez Sutil, Francesc Sáinz Bermejo, Sandra Toribio Caballero, and Rosa Velasco
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- Psychoanalysis
- Abstract
Durante más de un siglo, el psicoanálisis ha evolucionado en el conocimiento del ser humano progresando en sus principios teóricos y terapéuticos. Del mismo modo, cada vez es una disciplina más integrativa teniendo en cuenta los desarrollos de paradigmas como las neurociencias, la psicología, la sociología o la antropología cultural. Temas actuales como el género, las nuevas perspectivas en trauma, la subjetividad de paciente y terapeuta o el campo neurocientífico son abordados actualmente desde una perspectiva contemporánea del psicoanálisis, con una actitud abierta y dinámica no conocida hasta ahora. El lector encontrará estas conexiones a través de los coautores que redactan esta obra, reconocidos profesionales con décadas de experiencia clínica y docente. Esta experiencia y la integración de conocimientos pueden verse a través de los múltiples casos expuestos que harán llegar al lector a la comprensión de la psicoterapia psicoanalítica contemporánea.
- Published
- 2022
41. El habitus académico de los estudiantes en el sistema de bachillerato mexicano
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Alim Getze Mani Eden Vasquez Feria, José Luis Suárez Domínguez, and Silvia Jiménez García
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enseñanza secundaria ,estudiante de secundaria ,fin de escuela secundaria ,prácticas en enseñanza ,reforma educativa ,habitus académico ,Education - Abstract
En el 2008, el nivel educativo medio superior mexicano fue objeto de una reforma educativa que buscó asentar un modelo curricular basado en competencias. Para lograr lo anterior, se consideró central el cambio de las prácticas de enseñanza de los docentes. Desde una perspectiva estructural constructivista, se usó el concepto de habitus académico para realizar una aproximación sobre los cambios y persistencias en las prácticas de enseñanza comúnmente empleadas por los docentes, y la manera en cómo estas son percibidas por los estudiantes. Por medio del Paquete Estadístico para las Ciencias Sociales (SPSS por sus siglas en inglés), se empleó el cálculo de medias, además de pruebas de correlación para el procesamiento de la información procedente de 1033 estudiantes de recién ingreso —en el 2018— a trece facultades de la Universidad Veracruzana. Se presentan los resultados en dos secciones analíticas, exposición e incorporación. En la primera se detalla que la mayoría de los estudiantes fueron expuestos a prácticas educativas de tipo tradicional. En la segunda se describe la relación de esas prácticas con la forma en que los estudiantes clasifican y jerarquizan las prácticas de enseñanza. Considerando la información expuesta, se discuten los resultados tratando de dar cuenta tanto de los cambios como de las persistencias del habitus en el bachillerato. Se identifica una relación positiva entre el uso frecuente de prácticas de instrucción y de evaluación, con la forma en que los estudiantes clasificaban y jerarquizaban valorativamente las prácticas educativas.
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- 2024
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42. IKZF1plus is a frequent biomarker of adverse prognosis in Mexican pediatric patients with B-acute lymphoblastic leukemia
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Joaquin Garcia-Solorio, Juan Carlos Núñez-Enriquez, Marco Jiménez-Olivares, Janet Flores-Lujano, Fernanda Flores-Espino, Carolina Molina-Garay, Alejandra Cervera, Diana Casique-Aguirre, José Gabriel Peñaloza-Gonzalez, Ma. Del Rocío Baños-Lara, Ángel García-Soto, César Alejandro Galván-Díaz, Alberto Olaya-Vargas, Hilario Flores Aguilar, Minerva Mata-Rocha, Miguel Ángel Garrido-Hernández, Juan Carlos Solís-Poblano, Nuria Citlalli Luna-Silva, Lena Sarahi Cano-Cuapio, Pierre Mitchel Aristil-Chery, Fernando Herrera-Quezada, Karol Carrillo-Sanchez, Anallely Muñoz-Rivas, Luis Leonardo Flores-Lagunes, Elvia Cristina Mendoza-Caamal, Beatriz Eugenia Villegas-Torres, Vincent González-Osnaya, Elva Jiménez-Hernández, José Refugio Torres-Nava, Jorge Alfonso Martín-Trejo, María de Lourdes Gutiérrez-Rivera, Rosa Martha Espinosa-Elizondo, Laura Elizabeth Merino-Pasaye, María Luisa Pérez-Saldívar, Silvia Jiménez-Morales, Everardo Curiel-Quesada, Haydeé Rosas-Vargas, Juan Manuel Mejía-Arangure, and Carmen Alaez-Verson
- Subjects
IKZF1plus ,IKZF1 gene mutation ,CDKN2A/2B gene mutation ,PAX5 gene mutation ,PAR1 deletions ,pediatric B-ALL ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundRecurrent genetic alterations contributing to leukemogenesis have been identified in pediatric B-cell Acute Lymphoblastic Leukemia (B-ALL), and some are useful for refining classification, prognosis, and treatment selection. IKZF1plus is a complex biomarker associated with a poor prognosis. It is characterized by IKZF1 deletion coexisting with PAX5, CDKN2A/2B, or PAR1 region deletions. The mutational spectrum and clinical impact of these alterations have scarcely been explored in Mexican pediatric patients with B-ALL. Here, we report the frequency of the IKZF1plus profile and the mutational spectrum of IKZF1, PAX5, CDKN2A/2B, and ERG genes and evaluate their impact on overall survival (OS) in a group of patients with B-ALL.MethodsA total of 206 pediatric patients with de novo B-ALL were included. DNA was obtained from bone marrow samples at diagnosis before treatment initiation. A custom-designed next-generation sequencing panel was used for mutational analysis. Kaplan-Meier analysis was used for OS estimation.ResultsWe identified the IKZF1plus profile in 21.8% of patients, which was higher than that previously reported in other studies. A significantly older age (p=0.04), a trend toward high-risk stratification (p=0.06), and a decrease in 5-year Overall Survival (OS) (p=0.009) were observed, although heterogeneous treatment protocols in our cohort would have impacted OS. A mutation frequency higher than that reported was found for IKZF1 (35.9%) and CDKN2A/2B (35.9%) but lower for PAX5 (26.6%). IKZF1MUT group was older at diagnosis (p=0.0002), and most of them were classified as high-risk (73.8%, p=0.02), while patients with CDKN2A/2BMUT had a higher leukocyte count (p=0.01) and a tendency toward a higher percentage of blasts (98.6%, >50% blasts, p=0.05) than the non-mutated patients. A decrease in OS was found in IKZF1MUT and CDKN2A/2BMUT patients, but the significance was lost after IKZF1plus was removed.DiscussionOur findings demonstrated that Mexican patients with B-ALL have a higher prevalence of genetic markers associated with poor outcomes. Incorporating genomic methodologies into the diagnostic process, a significant unmet need in low- and mid-income countries, will allow a comprehensive identification of relevant alterations, improving disease classification, treatment selection, and the general outcome.
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- 2024
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43. Exploring the metabolic and antioxidant potential of solergy: Implications for enhanced animal production
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Pamela Olivares-Ferretti, Viviana Chavez, Ekaitz Maguregui, Silvia Jiménez, Octavi Colom, and Jorge Parodi
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Cells ,Animal production ,Antioxidante ,Glcogen ,Metabolism ,Biotechnology ,TP248.13-248.65 - Abstract
Cell models are indispensable tools in biotechnology when investigating the functional properties of organic compounds. The emergence of various additives designed to enhance animal production has introduced the need for in-depth evaluations, which are often hindered by the complexities of in vivo testing. In this study, we harnessed cell-based models to scrutinize the impact of Solergy as a regulator of cellular metabolism with a particular focus on its modulation of glycogen and antioxidant effects. Our experiment was designed to include assessments of the influence of Solergy on the viability of both terrestrial and aquatic vertebrate cell models, which revealed the benign nature of Solergy and its lack of adverse effects. Furthermore, we examined the capacity of Solergy to modulate intracellular ATP concentrations and enhance glycogen accumulation. Notably, the antioxidant potential of Solergy and its ability to mitigate cellular aging were evaluated within the same cellular frameworks. The outcomes of our investigation suggest that Solergy is a potent metabolic regulator that elevates cellular activity while exerting an antioxidant effect. Importantly, our study demonstrates that Solergy does not induce changes in membrane oxidation. These findings indicate the potential of using Solergy to regulate glycogen synthesis, intracellular ATP concentrations, and oxidative stress in production animals. The multifaceted effects of this additive, which acts as both a metabolism enhancer and an antioxidant, open doors to the creation of custom diets tailored to meet specific production needs while maintaining stable production parameters.
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- 2024
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44. Dapagliflozin Monotherapy in Type 2 Diabetic Patients With Inadequate Glycemic Control by Diet and Exercise: A randomized, double-blind, placebo-controlled, phase 3 trial
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Ferrannini, Ele, Ramos, Silvia Jimenez, Salsali, Afshin, Tang, Weihua, and List, James F.
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- 2010
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45. Cost per response for abatacept versus adalimumab in rheumatoid arthritis by ACPA subgroups in Germany, Italy, Spain, US and Canada
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Chad Patel, Silvia Jimenez Merino, M Mtibaa, Carmela Nappi, Francesco Saverio Mennini, Giulia Attinà, Jason Foo, Kirsten H Herrmann, Martin J. Bergman, Christoph Baerwald, Denis Choquette, José Manuel Rodriguez-Heredia, and Laure Weijers
- Subjects
Time Factors ,Biologic ,Cost-Benefit Analysis ,Anti-Citrullinated Protein Antibodies ,law.invention ,Arthritis, Rheumatoid ,0302 clinical medicine ,Randomized controlled trial ,Quality of life ,immune system diseases ,law ,Immunology and Allergy ,030212 general & internal medicine ,Settore SECS-P/01 - Economia Politica ,skin and connective tissue diseases ,biology ,Remission Induction ,Anti–citrullinated protein antibody ,Cost-consequence analysis ,Europe ,Models, Economic ,Treatment Outcome ,Antirheumatic Agents ,Rheumatoid arthritis ,Public Health ,medicine.drug ,musculoskeletal diseases ,Canada ,medicine.medical_specialty ,Biomarker/prognostic factors ,Clinical Decision-Making ,Immunology ,Subgroup analysis ,Drug Costs ,Decision Support Techniques ,Abatacept ,03 medical and health sciences ,Incremental cost analysis ,Rheumatology ,Cost Savings ,Internal medicine ,medicine ,Adalimumab ,Humans ,030203 arthritis & rheumatology ,business.industry ,medicine.disease ,United States ,Disease-modifying antirheumatic drugs ,biology.protein ,Physical therapy ,business ,Biomarkers - Abstract
Rheumatoid arthritis (RA) is a chronic inflammatory disorder leading to disability and reduced quality of life. Effective treatment with biologic DMARDs poses a significant economic burden. The Abatacept versus Adalimumab Comparison in Biologic-Naïve RA Subjects with Background Methotrexate (AMPLE) trial was a head-to-head, randomized study comparing abatacept in serum anti-citrullinated protein antibody (ACPA)-positive patients, with increasing efficacy across ACPA quartile levels. The aim of this study was to evaluate the cost per response accrued using abatacept versus adalimumab in ACPA-positive and ACPA-negative patients with RA from the health care perspective in Germany, Italy, Spain, the US and Canada. A cost-consequence analysis (CCA) was designed to compare the monthly costs per responding patient/patient in remission. Efficacy, safety and resource use inputs were based on the AMPLE trial. A one-way deterministic sensitivity analysis (OWSA) was also performed to assess the impact of model inputs on the results for total incremental costs. Cost per response in ACPA-positive patients favoured abatacept compared with adalimumab (ACR20, ACR90 and HAQ-DI). Subgroup analysis favoured abatacept with increasing stringency of response criteria and serum ACPA levels. Cost per remission (DAS28-CRP) favoured abatacept in ACPA-negative patients, while cost per CDAI and SDAI favoured abatacept in ACPA-positive patients. Abatacept was consistently favoured in ACPA-Q4 patients across all outcomes and countries. Cost savings were greater with abatacept when more stringent response criteria were applied and also with increasing ACPA levels, which could lead to a lower overall health care budget impact with abatacept compared with adalimumab.
- Published
- 2017
46. Alterations in the Growth Responses of Pelargonium × hortorum Irrigated with Microalgae Production Wastewater
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Alejandro Rápalo-Cruz, Cintia Gómez-Serrano, Cynthia Victoria González-López, Mohammad Bagher Hassanpouraghdam, and Silvia Jiménez-Becker
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treated water ,salinity ,irrigation ,nutrients ,ornamental plants ,Plant culture ,SB1-1110 - Abstract
The utilization of treated wastewater can enhance the crops’ irrigation efficacy by offering an extra source of water and nutrients for agricultural purposes. This methodology helps alleviate the pressure on conventional water resources and can be a sustainable strategy to address the challenges of water scarcity. However, it is essential to ensure that wastewater is properly treated to meet quality and safety standards before its application to agricultural crops. This study focuses on exploring the reuse of wastewater from microalgae production and its impact on Pelargonium × hortorum growth during two seasons (autumn and spring). The established treatments were as follows: tap water (control 1); 100% IW—inlet wastewater (control 2); 100% OW—outlet from the reactor; 75% OW + 25% W—75% outlet from the reactor and 25% tap water; and 50% OW + 50%W—50% outlet from the reactor and 50% tap water. Irrigation with wastewater in autumn did not have a significant negative effect (p > 0.05) on plant height, plant diameter, leaf dry weight, roots, or total dry weight, and it was comparable to the control in all applied percentages. On the other hand, wastewater irrigation during spring had a meaningful positive (p < 0.05) impact on plant growth compared to the control. These wastewater resources have a high concentration of nutrients, making them a valuable source of essential and/or beneficial elements. The levels of nutrients such as NO3− range from 144.08 ppm to 82.10 ppm, PO43− ranges from 14.14 ppm to 7.11 ppm, and K+ ranges from 36.83 ppm to 29.71 ppm. Therefore, the obtained results support the viability and effectiveness of using wastewater after microalgae production in agriculture to reduce water demand, mitigate water pollution, and substitute chemical fertilizer input, contributing to more sustainable agricultural practices. These results, with more detailed evaluations, would be applicable to other related plant species and are even applicable to the commercial production sectors.
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- 2024
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47. Epidemiology of childhood acute leukemias in marginalized populations of the central-south region of Mexico: results from a population-based registry
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Janet Flores-Lujano, Aldo Allende-López, David Aldebarán Duarte-Rodríguez, Erika Alarcón-Ruiz, Lizbeth López-Carrillo, Teresa Shamah-Levy, Mariano E. Cebrián, Ma. del Rocío Baños-Lara, Diana Casique-Aguirre, Jesús Elizarrarás-Rivas, Javier Antonio López-Aquino, Miguel Ángel Garrido-Hernández, Daniela Olvera-Caraza, Vanessa Terán-Cerqueda, Karina Beatriz Martínez-José, Pierre Mitchel Aristil-Chery, Enoch Alvarez-Rodríguez, Wilfrido Herrera-Olivares, Guillermo J. Ruíz-Arguelles, Lénica Anahí Chavez-Aguilar, Aquilino Márquez-Toledo, Lena Sarahi Cano-Cuapio, Nuria Citlalli Luna-Silva, Maria Angélica Martínez-Martell, Anabel Beatriz Ramirez-Ramirez, Laura Elizabeth Merino-Pasaye, César Alejandro Galván-Díaz, Aurora Medina-Sanson, Maria de Lourdes Gutiérrez-Rivera, Jorge Alfonso Martín-Trejo, Emmanuel Rodriguez-Cedeño, Vilma Carolina Bekker-Méndez, María de los Ángeles Romero-Tlalolini, Astin Cruz-Maza, Gerardo Juárez-Avendaño, Sonia Mayra Pérez-Tapia, Juan Carlos Rodríguez-Espinosa, Miriam Carmina Suárez-Aguirre, Fernando Herrera-Quezada, Anahí Hernández-Díaz, Lizbeth Alondra Galván-González, Minerva Mata-Rocha, Amanda Idaric Olivares-Sosa, Haydeé Rosas-Vargas, Silvia Jiménez-Morales, Mariana Cárdenas-González, María Elena Álvarez-Buylla Roces, Célida Duque-Molina, Rosana Pelayo, Juan Manuel Mejía-Aranguré, and Juan Carlos Núñez-Enriquez
- Subjects
incidence ,child ,lymphoid leukemia ,myeloid leukemia ,registries ,epidemiology ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionAcute leukemias (AL) are the main types of cancer in children worldwide. In Mexico, they represent one of the main causes of death in children under 20 years of age. Most of the studies on the incidence of AL in Mexico have been developed in the urban context of Greater Mexico City and no previous studies have been conducted in the central-south of the country through a population-based study. The aim of the present work was to identify the general and specific incidence rates of pediatric AL in three states of the south-central region of Mexico considered as some of the marginalized populations of Mexico (Puebla, Tlaxcala, and Oaxaca).MethodsA population-based study was conducted. Children aged less than 20 years, resident in these states, and newly diagnosed with AL in public/private hospitals during the period 2021-2022 were identified. Crude incidence rates (cIR), standardized incidence rates (ASIRw), and incidence rates by state subregions (ASIRsr) were calculated. Rates were calculated using the direct and indirect method and reported per million children under 20 years of age. In addition, specific rates were calculated by age group, sex, leukemia subtype, and immunophenotype.ResultsA total of 388 cases with AL were registered. In the three states, the ASIRw for AL was 51.5 cases per million (0-14 years); in Puebla, it was 53.2, Tlaxcala 54.7, and Oaxaca de 47.7. In the age group between 0-19 years, the ASIRw were 44.3, 46.4, 48.2, and 49.6, in Puebla, Tlaxcala, and Oaxaca, respectively. B-cell acute lymphoblastic leukemia was the most common subtype across the three states.ConclusionThe incidence of childhood AL in the central-south region of Mexico is within the range of rates reported in other populations of Latin American origin. Two incidence peaks were identified for lymphoblastic and myeloid leukemias. In addition, differences in the incidence of the disease were observed among state subregions which could be attributed to social factors linked to the ethnic origin of the inhabitants. Nonetheless, this hypothesis requires further investigation.
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- 2024
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48. Evidence of spatial clustering of childhood acute lymphoblastic leukemia cases in Greater Mexico City: report from the Mexican Inter-Institutional Group for the identification of the causes of childhood leukemia
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David Aldebarán Duarte-Rodríguez, Janet Flores-Lujano, Richard J. Q. McNally, María Luisa Pérez-Saldivar, Elva Jiménez-Hernández, Jorge Alfonso Martín-Trejo, Laura Eugenia Espinoza-Hernández, Aurora Medina-Sanson, Rogelio Paredes-Aguilera, Laura Elizabeth Merino-Pasaye, Martha Margarita Velázquez-Aviña, José Refugio Torres-Nava, Rosa Martha Espinosa-Elizondo, Raquel Amador-Sánchez, Juan José Dosta-Herrera, Javier Anastacio Mondragón-García, Juana Esther González-Ulibarri, Sofía Irene Martínez-Silva, Gilberto Espinoza-Anrubio, María Minerva Paz-Bribiesca, Perla Salcedo-Lozada, Rodolfo Ángel Landa-García, Rosario Ramírez-Colorado, Luis Hernández-Mora, Marlene Santamaría-Ascencio, Anselmo López-Loyola, Arturo Hermilo Godoy-Esquivel, Luis Ramiro García-López, Alison Ireri Anguiano-Ávalos, Karina Mora-Rico, Alejandro Castañeda-Echevarría, Roberto Rodríguez-Jiménez, José Alberto Cibrian-Cruz, Karina Anastacia Solís-Labastida, Rocío Cárdenas-Cardos, Norma López-Santiago, Luz Victoria Flores-Villegas, José Gabriel Peñaloza-González, Ana Itamar González-Ávila, Martin Sánchez-Ruiz, Roberto Rivera-Luna, Luis Rodolfo Rodríguez-Villalobos, Francisco Hernández-Pérez, Jaime Ángel Olvera-Durán, Luis Rey García-Cortés, Minerva Mata-Rocha, Omar Alejandro Sepúlveda-Robles, Vilma Carolina Bekker-Méndez, Silvia Jiménez-Morales, Jorge Meléndez-Zajgla, Haydée Rosas-Vargas, Elizabeth Vega, Juan Carlos Núñez-Enríquez, and Juan Manuel Mejía-Aranguré
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leukemia ,child ,spatial clustering ,SaTScan software to analyze spatial ,electromagnetic fields ,environmental exposure ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundA heterogeneous geographic distribution of childhood acute lymphoblastic leukemia (ALL) cases has been described, possibly, related to the presence of different environmental factors. The aim of the present study was to explore the geographical distribution of childhood ALL cases in Greater Mexico City (GMC).MethodsA population-based case-control study was conducted. Children
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- 2024
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49. Editorial: Decoding the genome of acute lymphoblastic leukemia through genomic and transcriptomic approaches
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Silvia Jiménez-Morales, Augusto Rojas-Martinez, and Gisela Barbany
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acute lymphoblastic leukemia ,RNA-Seq - RNA sequencing ,iAMP21 ,whole exome sequencing ,fusion genes ,fish ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2024
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50. Association between genetic variants of membrane transporters and the risk of high-grade hematologic adverse events in a cohort of Mexican children with B-cell acute lymphoblastic leukemia
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Deyanira Escalante-Bautista, Doris Cerecedo, Elva Jiménez-Hernández, Carolina González-Torres, Javier Gaytán-Cervantes, Juan Carlos Núñez-Enríquez, Omar Alejandro Sepúlveda-Robles, Marlon De Ita, Silvia Jiménez-Morales, José Manuel Sánchez-López, Minerva Mata-Rocha, José Refugio Torres-Nava, Jorge Alfonso Martín-Trejo, Luz Victoria Flores-Villegas, María de Lourdes Gutiérrez-Rivera, Laura Elizabeth Merino-Pasaye, Karina Anastacia Solís-Labastida, María Raquel Miranda-Madrazo, Gabriela Alicia Hernández-Echáurregui, Darío Orozco-Ruíz, Janet Flores-Lujano, María Luisa Pérez-Saldívar, Juan Manuel Mejía-Aranguré, and Haydeé Rosas-Vargas
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pharmacogenomics ,membrane transporters ,toxicity ,acute lymphoblastic leukemia ,ATP-binding cassette transporter ,solute carrier family ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundAdvances in the understanding of the pathobiology of childhood B-cell acute lymphoblastic leukemia (B-ALL) have led towards risk-oriented treatment regimens and markedly improved survival rates. However, treatment-related toxicities remain a major cause of mortality in developing countries. One of the most common adverse effects of chemotherapy in B-ALL is the hematologic toxicity, which may be related to genetic variants in membrane transporters that are critical for drug absorption, distribution, and elimination. In this study we detected genetic variants present in a selected group genes of the ABC and SLC families that are associated with the risk of high-grade hematologic adverse events due to chemotherapy treatment in a group of Mexican children with B-ALL.MethodsNext generation sequencing (NGS) was used to screen six genes of the ABC and seven genes of the SLC transporter families, in a cohort of 96 children with B-ALL. The grade of hematologic toxicity was classified according to the National Cancer Institute’s Common Terminology Criteria for Adverse Events (CTCAE) version 5.0, Subsequently, two groups of patients were formed: the null/low-grade (grades 1 and 2) and the high-grade (grades 3 to 5) adverse events groups. To determine whether there is an association between the genetic variants and high-grade hematologic adverse events, logistic regression analyses were performed using co-dominant, dominant, recessive, overdominant and log-additive inheritance models. Odds ratio (OR) and 95% confidence intervals (95% CI) were calculated.ResultsWe found two types of associations among the genetic variants identified as possible predictor factors of hematologic toxicity. One group of variants associated with high-grade toxicity risk: ABCC1 rs129081; ABCC4 rs227409; ABCC5 rs939338, rs1132776, rs3749442, rs4148575, rs4148579 and rs4148580; and another group of protective variants that includes ABCC1 rs212087 and rs212090; SLC22A6 rs4149170, rs4149171 and rs955434.ConclusionThere are genetic variants in the SLC and ABC transporter families present in Mexican children with B-ALL that can be considered as potential risk markers for hematologic toxicity secondary to chemotherapeutic treatment, as well as other protective variants that may be useful in addition to conventional risk stratification for therapeutic decision making in these highly vulnerable patients.
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- 2024
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