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In this contribution, new data concerning the distribution of native vascular flora in Italy are presented. It includes new records, confirmations, and exclusions to the Italian administrative regions for taxa in the genera Anacyclus, Anthyllis, Bolboschoenus, Catapodium, Festuca, Hordeum, Lavandula, Ophrys, Pseudopodospermum, Rosa, Sorbus and Spergula. Nomenclatural and distribution updates, published elsewhere, and corrigenda are provided as Suppl. material 1.

The identification, classification and mapping of different plant communities and habitats is of fundamental importance for defining biodiversity monitoring and conservation strategies. Today, the availability of high temporal, spatial and spectral data from remote sensing platforms provides dense time series over different spectral bands. In the case of supervised mapping, time series based on classical vegetation indices (e.g., NDVI, GNDVI, …) are usually input characteristics, but the selection of the best index or set of indices (which guarantees the best performance) is still based on human experience and is also influenced by the study area. In this work, several different time series, based on Sentinel-2 images, were created exploring new combinations of bands that extend the classic basic formulas as the normalized difference index. Multivariate Functional Principal Component Analysis (MFPCA) was used to contemporarily decompose the multiple time series. The principal multivariate seasonal spectral variations identified (MFPCA scores) were classified by using a Random Forest (RF) model. The MFPCA and RF classifications were nested into a forward selection strategy to identify the proper and minimum set of indices’ (dense) time series that produced the most accurate supervised classification of plant communities and habitat. The results we obtained can be summarized as follows: (i) the selection of the best set of time series is specific to the study area and the habitats involved; (ii) well-known and widely used indices such as the NDVI are not selected as the indices with the best performance; instead, time series based on original indices (in terms of formula or combination of bands) or underused indices (such as those derivable with the visible bands) are selected; (iii) MFPCA efficiently reduces the dimensionality of the data (multiple dense time series) providing ecologically interpretable results representing an important tool for habitat modelling outperforming conventional approaches that consider only discrete time series.

Onopordum tauricum Willd., a species distributed in Eastern Europe, has been the subject of various research endeavors aimed at assessing its suitability for extracting vegetable rennet for use in the production of local cheeses as a substitute for animal-derived rennet. In Italy, the species has an extremely fragmented and localized distribution in six locations scattered across the central-northern Apennines and some areas of southern Italy. In this study, both the morphology and genetic diversity of the six known Italian populations were investigated to detect putative ecotypes. To this end, 33 morphological traits were considered for morphometric measurements, while genetic analysis was conducted on the entire genome using the ddRAD-Seq method. Both analyses revealed significant differences among the Apennine populations (SOL, COL, and VIS) and those from southern Italy (ROT, PES, and LEC). Specifically, the southern Italian populations appear to deviate significantly in some characteristics from the typical form of the species. Therefore, its attribution to O. tauricum is currently uncertain, and further genetic and morphological analyses are underway to ascertain its systematic placement within the genus Onopordum.

The main purpose of the 92/43/EEC Habitats Directive is to contribute to the conservation of biodiversity, understood as habitat types and species of the flora and fauna of the European Union. To achieve this goal, natural and semi-natural biodiversity as a whole must be recognized and included in its annexes. As for the conservation of biotopes, named habitat types, Italy is unfortunately lacking as it the Annex I does not include important ecosystems that are typical of its territory, rare for biogeographical reasons or threatened. Therefore, the opportunity to identify a first list of significant habitats for central Italy is discussed here. For each of the new proposed types (new habitats or new subtypes) a sheet has been prepared to highlight their salient characteristics. The new proposals concern seven habitat types and one subtype: sedge and reeds formations (Freshwater large sedge and reed beds), willow shrublands (Shrubby willow formations of river banks and fens), Apennine garrigues (Apennine hilly and montane garrigues), a new subtype of Annex I Habitat 6130 (Communities of herbaceous and dwarf shrub-suffrutescent plants of Italian ultramafic substrates), ancient olive groves ("Centuries-old olive groves" with evergreen Quercus spp. and arborescent matorral), secondary meadows (Italian submontane and montane pastured meadows dominated by Cynosurus cristatus), badlands (Pioneer halophilous and sub-halophilous communities of “calanchi” and “biancane” badlands) and hop-hornbeam woods (Italian-Balkan hop-hornbeam woods).

The mapping and monitoring of natural and semi-natural habitats are crucial activities and are regulated by European policies and regulations, such as the 92/43/EEC. In the Mediterranean area, which is characterized by high vegetational and environmental diversity, the mapping and monitoring of habitats are particularly difficult and often exclusively based on in situ observations. In this scenario, it is necessary to automate the generation of updated maps to support the decisions of policy makers. At present, the availability of high spatiotemporal resolution data provides new possibilities for improving the mapping and monitoring of habitats. In this work, we present a methodology that, starting from remotely sensed time-series data, generates habitat maps using supervised classification supported by Functional Data Analysis. We constructed the methodology using Sentinel-2 data in the Mediterranean Special Area of Conservation “Gola di Frasassi” (Code: IT5320003). In particular, the training set uses 308 field plots with 11 target classes (five forests, two shrubs, one grassland, one mosaic, one extensive crop, and one urban land). Starting from vegetation index time-series data, Functional Principal Component Analysis was applied to derive FPCA scores and components. In particular, in the classification stage, the FPCA scores are considered as features. The obtained results out-performed a previous map derived from photo-interpretation by domain experts. We obtained an overall accuracy of 85.58% using vegetation index time-series, topography, and lithology data. The main advantages of the proposed approach are the capability to efficiently compress high dimensional data (dense remote-sensing time series) providing results in a compact way (e.g., FPCA scores and mean seasonal time profiles) that: (i) facilitate the link between remote sensing with habitat mapping and monitoring and their ecological interpretation and (ii) could be complementary to species-based approaches in plant community ecology and phytosociology.

The Worldwide Bioclimatic Classification System according to Rivas-Martínez (WBCS) is a bioclimatic classification that is widely used in vegetation science, geobotany, and landscape ecology. To date, only one complete WBCS map has been produced for Italy at the national scale. Here, we define two major updates to the WBCS map of Italy: improvements to the surface spatial accuracy for the climate, especially for precipitation; and detailed mapping of the Submediterraneity Index and its levels, which mainly characterize the ecotone area between the Mediterranean and the Temperate macrobioclimates. Finally, all WBCS units (i.e. macrobioclimates, bioclimatic variants, bioclimates, continentality types, bioclimatic belts) and the Submediterraneity Index are mapped on a scale of 1:2,500,000. These maps and the bioclimatic indices and monthly climatic surfaces are available here as raster data-sets (resolution, 900 m) and are useful for accurate bioclimatic diagnosis for the entire Italian territory. They will also support vegetation–environment relationship analysis, ecological modeling, and applied studies of climate change at the national scale.

Phytosociology is a reference method to classify vegetation that relies on field data. Its classification in hierarchical vegetation units, from plant associations to class level, hierarchically reflects the floristic similarity between different sites on different spatial scales. The development of remotely sensed multispectral platforms as satellites enormously contributes to the detection and mapping of vegetation on all scales. However, the integration between phytosociology and remotely sensed data is rather difficult and little practiced despite being a goal for the modern science of vegetation. In this study, we demonstrate how normalized difference vegetation index (NDVI) time series with functional principal component analysis (FPCA) could support the analyses of phytosociologists. The approach supports the recognition and characterization of forest plant communities identified on the ground by the phytosociological approach by using NDVI time series that encode phenological behaviors. The methodology was evaluated in two study areas of central Italy, and it could characterize and discriminate six different forest plant associations that have similar dominant tree species but distinct specific composition: three dominated by black hornbeam (Ostrya carpinifolia) and three dominated by holm oak (Quercus ilex). The methodology was also able to optimize the ground data collection of unexplored areas (from a phytosociological point of view) by using a phenoclustering approach. The obtained results confirmed that by using remote sensing, it is possible to separate and distinguish plant communities in an objective/instrumental way, thus overcoming the subjectivity intrinsic to the phytosociological method. In particular, FPCA functional components (NDVI seasonalities) were significantly correlated with vegetation abundance data variation (Mantel r = 0.76, p < 0.001).

The classification of plant associations and their mapping play a key role in defining habitat biodiversity management, monitoring, and conservation strategies. In this work we present a methodological framework to map Mediterranean forest plant associations and habitats that relies on the application of the Functional Principal Component Analysis (FPCA) to the remotely sensed Normalized Difference Vegetation Index (NDVI) time series. FPCA, considering the chronological order of the data, reduced the NDVI time series data complexity and provided (as FPCA scores) the main seasonal NDVI phenological variations of the forests. We performed a supervised classification of the FPCA scores combined with topographic and lithological features of the study area to map the forest plant associations. The supervised mapping achieved an overall accuracy of 87.5%. The FPCA scores contributed to the global accuracy of the map much more than the topographic and lithological features. The results showed that (i) the main seasonal phenological variations (FPCA scores) are effective spatial predictors to obtain accurate plant associations and habitat maps; (ii) the FPCA is a suitable solution to simultaneously express the relationships between remotely sensed and ecological field data, since it allows us to integrate these two different perspectives about plant associations in a single graph. The proposed approach based on the FPCA is useful for forest habitat monitoring, as it can contribute to produce periodically detailed vegetation-based habitat maps that reflect the “current” status of vegetation and habitats, also supporting the study of plant associations.

The main goal of the SIT-REM project is the design and the development of an interoperable web-GIS environment for the information retrieval and data editing/updating of the geobotanical and wildlife map of Marche Region. The vegetation, plant landscape and faunistic analysis allow the realization of a regional information system for wildlife-geobotanical data. A main characteristic of the SIT-REM is its flexibility and interoperability, in particular, its ability to be easily updated with the insertion of new types of environmental, faunal or socio-economic data and to generate analyses at any geographical (from regional to local) or quantitative level of detail. Different query levels obtain the latter: spatial queries, hybrid query builder and WMSs usable by means of a GIS. SIT-REM has been available online for more than a year and its use over this period has produced extensive data about users’ experiences.