40 results on '"Sinclair EA"'
Search Results
2. Seagrass Restoration Is Possible: Insights and Lessons From Australia and New Zealand
- Author
-
Tan, YM, Dalby, O, Kendrick, GA, Statton, J, Sinclair, EA, Fraser, MW, Macreadie, P, Gillies, CL, Coleman, RA, Waycott, M, van Dijk, KJ, Vergés, A, Ross, JD, Campbell, M, Matheson, FE, Jackson, EL, Irving, AD, Govers, LL, Connolly, RM, McLeod, IM, Rasheed, MA, Kirkman, H, Flindt, MR, Lange, T, Miller, Adam D., Sherman, Craig D. H., Tan, YM, Dalby, O, Kendrick, GA, Statton, J, Sinclair, EA, Fraser, MW, Macreadie, P, Gillies, CL, Coleman, RA, Waycott, M, van Dijk, KJ, Vergés, A, Ross, JD, Campbell, M, Matheson, FE, Jackson, EL, Irving, AD, Govers, LL, Connolly, RM, McLeod, IM, Rasheed, MA, Kirkman, H, Flindt, MR, Lange, T, Miller, Adam D., and Sherman, Craig D. H.
- Abstract
Seagrasses are important marine ecosystems situated throughout the world’s coastlines. They are facing declines around the world due to global and local threats such as rising ocean temperatures, coastal development and pollution from sewage outfalls and agriculture. Efforts have been made to reduce seagrass loss through reducing local and regional stressors, and through active restoration. Seagrass restoration is a rapidly maturing discipline, but improved restoration practices are needed to enhance the success of future programs. Major gaps in knowledge remain, however, prior research efforts have provided valuable insights into factors influencing the outcomes of restoration and there are now several examples of successful large-scale restoration programs. A variety of tools and techniques have recently been developed that will improve the efficiency, cost effectiveness, and scalability of restoration programs. This review describes several restoration successes in Australia and New Zealand, with a focus on emerging techniques for restoration, key considerations for future programs, and highlights the benefits of increased collaboration, Traditional Owner (First Nation) and stakeholder engagement. Combined, these lessons and emerging approaches show that seagrass restoration is possible, and efforts should be directed at upscaling seagrass restoration into the future. This is critical for the future conservation of this important ecosystem and the ecological and coastal communities they support.
- Published
- 2020
3. Assessing the effect of genetic diversity on the early establishment of the threatened seagrass Posidonia australis using a reciprocal-transplant experiment
- Author
-
Evans, SM, Sinclair, EA, Poore, AGB, Bain, KF, Vergés, A, Evans, SM, Sinclair, EA, Poore, AGB, Bain, KF, and Vergés, A
- Abstract
Two common goals for restoration are rapid plant establishment and long-term plant persistence. The success of transplanted populations may be jeopardized if the donor transplants are not genetically diverse, and/or poorly matched to their new environment. Here, we test the effects of local adaptation and plot-level genetic diversity on the early establishment phase of a threatened seagrass species, Posidonia australis, by performing a reciprocal transplant experiment across two genetically and geographically distinct populations in southeastern Australia. Posidonia australis is a long-lived, slow-growing species that has no seed bank, and the successful transplantation of live shoots and seedlings is the only available restoration method. Our results show a strong effect of local adaptation and genetic diversity on P. australis survivorship and performance over the first 6 months following transplantation. High-genetic diversity plots displayed higher survival rates and exhibited reduced productivity and increased carbohydrate reserves within the rhizome. This suggests that high-diversity plots included shoots that were conserving energy stores by actively reducing growth rates during the early stages of transplantation. The lowest diversity plots exhibited high leaf and root productivity and corresponding low carbohydrate reserves. This may be a sign of stress in the low-diversity transplants, potentially explaining the very low survival rate. We suggest that future restoration efforts source donor transplants from multiple local sources to ensure both local adaptation and sufficient genetic diversity to increase the likelihood of early establishment success.
- Published
- 2018
4. Identifying knowledge gaps in seagrass research and management: An Australian perspective
- Author
-
York, PH, Smith, TM, Coles, RG, McKenna, SA, Connolly, RM, Irving, AD, Jackson, EL, McMahon, K, Runcie, JW, Sherman, CDH, Sullivan, BK, Trevathan-Tackett, SM, Brodersen, KE, Carter, AB, Ewers, CJ, Lavery, PS, Roelfsema, CM, Sinclair, EA, Strydom, S, Tanner, JE, van Dijk, KJ, Warry, FY, Waycott, M, Whitehead, S, York, PH, Smith, TM, Coles, RG, McKenna, SA, Connolly, RM, Irving, AD, Jackson, EL, McMahon, K, Runcie, JW, Sherman, CDH, Sullivan, BK, Trevathan-Tackett, SM, Brodersen, KE, Carter, AB, Ewers, CJ, Lavery, PS, Roelfsema, CM, Sinclair, EA, Strydom, S, Tanner, JE, van Dijk, KJ, Warry, FY, Waycott, M, and Whitehead, S
- Abstract
© 2016 Elsevier Ltd Seagrass species form important marine and estuarine habitats providing valuable ecosystem services and functions. Coastal zones that are increasingly impacted by anthropogenic development have experienced substantial declines in seagrass abundance around the world. Australia, which has some of the world's largest seagrass meadows and is home to over half of the known species, is not immune to these losses. In 1999 a review of seagrass ecosystems knowledge was conducted in Australia and strategic research priorities were developed to provide research direction for future studies and management. Subsequent rapid evolution of seagrass research and scientific methods has led to more than 70% of peer reviewed seagrass literature being produced since that time. A workshop was held as part of the Australian Marine Sciences Association conference in July 2015 in Geelong, Victoria, to update and redefine strategic priorities in seagrass research. Participants identified 40 research questions from 10 research fields (taxonomy and systematics, physiology, population biology, sediment biogeochemistry and microbiology, ecosystem function, faunal habitats, threats, rehabilitation and restoration, mapping and monitoring, management tools) as priorities for future research on Australian seagrasses. Progress in research will rely on advances in areas such as remote sensing, genomic tools, microsensors, computer modeling, and statistical analyses. A more interdisciplinary approach will be needed to facilitate greater understanding of the complex interactions among seagrasses and their environment.
- Published
- 2017
5. The interaction of environment and genetic diversity within meadows of the seagrass Posidonia australis (Posidoniaceae)
- Author
-
Sinclair, EA, primary, Krauss, SL, additional, Anthony, J, additional, Hovey, R, additional, and Kendrick, GA, additional
- Published
- 2014
- Full Text
- View/download PDF
6. A framework for the practical science necessary to restore sustainable, resilient, and biodiverse ecosystems
- Author
-
Miller, BP, Sinclair, EA, Menz, Myles, Elliott, CP, Bunn, E, Commander, LE, Dalziell, E, David, E, Davis, B, Erickson, TE, Golos, P, Krauss, SL, Lewandrowski, L, Mayence, CE, Merino-Martín, L, Merritt, DJ, Nevill, P, Phillips, RD, Ritchie, AL, Ruoss, S, and Stevens, JC
- Subjects
13. Climate action ,570 Life sciences ,biology ,15. Life on land ,12. Responsible consumption - Abstract
Demand for restoration of resilient, self-sustaining, and biodiverse natural ecosystems as a conservation measure is increasing globally; however, restoration efforts frequently fail to meet standards appropriate for this objective. Achieving these standards requires management underpinned by input from diverse scientific disciplines including ecology, biotechnology, engineering, soil science, ecophysiology, and genetics. Despite increasing restoration research activity, a gap between the immediate needs of restoration practitioners and the outputs of restoration science often limits the effectiveness of restoration programs. Regrettably, studies often fail to identify the practical issues most critical for restoration success. We propose that part of this oversight may result from the absence of a considered statement of the necessary practical restoration science questions. Here we develop a comprehensive framework of the research required to bridge this gap and guide effective restoration. We structure questions in five themes: (1) setting targets and planning for success, (2) sourcing biological material, (3) optimizing establishment, (4) facilitating growth and survival, and (5) restoring resilience, sustainability, and landscape integration. This framework will assist restoration practitioners and scientists to identify knowledge gaps and develop strategic research focused on applied outcomes. The breadth of questions highlights the importance of cross-discipline collaboration among restoration scientists, and while the program is broad, successful restoration projects have typically invested in many or most of these themes. Achieving restoration ecology’s goal of averting biodiversity losses is a vast challenge: investment in appropriate science is urgently needed for ecological restoration to fulfill its potential and meet demand as a conservation tool.
7. A Donor Registry: Genomic Analyses of Posidonia australis Seagrass Meadows Identifies Adaptive Genotypes for Future-Proofing.
- Author
-
Nimbs MJ, Glasby TM, Sinclair EA, Swadling D, Davis TR, and Coleman MA
- Abstract
Globally, anthropogenic climate change has caused declines of seagrass ecosystems necessitating proactive restoration approaches that would ideally anticipate future climate scenarios, such as marine warming. In eastern Australia, estuaries with meadows of the endangered seagrass Posidonia australi s have warmed and acidified over the past decade, and seagrass communities have declined in some estuaries. Securing these valuable habitats will require proactive conservation and restoration efforts that could be augmented with restoration focussed on boosting resilience to future climate. Understanding patterns of selection and where seagrass meadows are adapted to particular environmental conditions is key for identifying optimal donor material for restoration. We used single nucleotide polymorphisms and genotype by environment analyses to identify candidate loci under putative selection to environmental stressors and assess genomic variation and allelic turnover along stressor gradients. The most important physicochemical variables driving selection were associated with temperature, water turbidity, and pH. We developed a preliminary 'donor registry' of pre-adapted P. australis genotypes by mapping the distribution of alleles to visualise allelic composition of each sampled seagrass meadow. The registry could be used as a first step to select source material for future-proofing restoration projects. A next step is to establish manipulative experiments that will be required to test whether pre-adapted genotypes confer increased resistance to multiple environmental stressors., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Author(s). Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
8. Comparative gene co-expression networks show enrichment of brassinosteroid and vitamin B processes in a seagrass under simulated ocean warming and extreme climatic events.
- Author
-
Booth MW, Sinclair EA, Jung EMU, Austin R, Bayer PE, Krauss SL, Breed MF, and Kendrick GA
- Abstract
Introduction: Ocean warming combined with extreme climatic events, such as marine heatwaves and flash flooding events, threaten seagrasses globally. How seagrasses cope with these challenges is uncertain, particularly for range-edge populations of species such as Posidonia australis in Shark Bay, Western Australia. Analyzing gene expression while manipulating multiple stressors provides insight into the genetic response and resilience of seagrasses to climate change. We conducted a gene expression study on a polyploid clone of P. australis during an 18-week mesocosm experiment to assess the responses to single and combined future climate change-associated stressors., Methods: Plants were exposed to (1) future ocean warming temperature (baseline +1.5°C) followed by a simulated marine heat wave (baseline +5.5°C), (2) light deprivation simulating observed marine heatwave driven turbidity (95% shade) at baseline temperatures, or (3) both stressors simultaneously. Basal leaf meristems were sampled for gene expression analysis using RNA-seq at four time points during the experiment. Weighted gene co-expression network analysis, GO term enrichment, and KEGG pathway enrichment analyses were used to identify stress responses., Results: Shaded plants showed specific gene enrichment for shade avoidance (programmed cell death) after three weeks of stress, and before any heated tanks showed a specific heat response. Shaded plants were positively correlated with programmed cell death and stress-related processes at the end of the experiment. Once ocean warming temperatures (+1.5°C) were in effect, gene enrichment for heat stress (e.g., ROS scavenging and polyamine metabolism) was present. Vitamin B processes, RNA polymerase II processes. and light-related meristematic phase changes were expressed with the addition of simulated MHW. Heated plants showed meristematic growth signatures as well as trehalose and salicylic acid metabolism. Brassinosteroid-related processes were significantly enriched in all stressor treatments at all time points, except for the isolated heat-stressed plants three weeks after stressor initiation., Discussion: Gene expression responses to the interaction between heat waves and turbidity-induced light reduction support the observed geographical scale mortality in seagrasses observed for P. australis in Shark Bay, suggesting that even this giant polyploid clone will be negatively impacted by more extreme climate change projections., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Booth, Sinclair, Jung, Austin, Bayer, Krauss, Breed and Kendrick.)
- Published
- 2024
- Full Text
- View/download PDF
9. Marine heatwave and reduced light scenarios cause species-specific metabolomic changes in seagrasses under ocean warming.
- Author
-
Jung EMU, Abdul Majeed NAB, Booth MW, Austin R, Sinclair EA, Fraser MW, Martin BC, Oppermann LMF, Bollen M, and Kendrick GA
- Subjects
- Ecosystem, Metabolomics, Oceans and Seas, Seawater, Alismatales metabolism
- Abstract
Climate change and extreme climatic events, such as marine heatwaves (MHWs), are threatening seagrass ecosystems. Metabolomics can be used to gain insight into early stress responses in seagrasses and help to develop targeted management and conservation measures. We used metabolomics to understand the temporal and mechanistic response of leaf metabolism in seagrasses to climate change. Two species, temperate Posidonia australis and tropical Halodule uninervis, were exposed to a combination of future warming, simulated MHW with subsequent recovery period, and light deprivation in a mesocosm experiment. The leaf metabolome of P. australis was altered under MHW exposure at ambient light while H. uninervis was unaffected. Light deprivation impacted both seagrasses, with combined effects of heat and low light causing greater alterations in leaf metabolism. There was no MHW recovery in P. australis. Conversely, the heat-resistant leaf metabolome of H. uninervis showed recovery of sugars and intermediates of the tricarboxylic acid cycle under combined heat and low light exposure, suggesting adaptive strategies to long-term light deprivation. Overall, this research highlights how metabolomics can be used to study the metabolic pathways of seagrasses, identifies early indicators of environmental stress and analyses the effects of environmental factors on plant metabolism and health., (© 2023 The Authors. New Phytologist © 2023 New Phytologist Foundation.)
- Published
- 2023
- Full Text
- View/download PDF
10. The cycle of seagrass life: From flowers to new meadows.
- Author
-
Kendrick GA, Cambridge ML, Orth RJ, Fraser MW, Hovey RK, Statton J, Pattiaratchi CB, and Sinclair EA
- Abstract
Understanding sexual reproduction and recruitment in seagrasses is crucial to their conservation and restoration. Flowering, seed production, seed recruitment, and seedling establishment data for the seagrass Posidonia australis was collected annually between 2013 and 2018 in meadows at six locations around Rottnest Island, Western Australia. Variable annual rates of flowering and seed production were observed among meadows between northern and southern sides of the island and among years. Meadows on the northern shore consistently flowered more intensely and produced more seeds across the years of the survey. Inter-site variation in clonal diversity and size of clones, seed production, wind and surface currents during pollen and seed release, and the large, but variable, impact of seed predation are likely the principal drivers of successful recruitment into established meadows and in colonizing unvegetated sands. The prolific but variable annual reproductive investment increases the probability of low levels of continuous recruitment from seed in this seagrass, despite high rates of abiotic and biotic disturbance at seedling, shoot, and patch scales. This strategy also imparts a level of ecological resilience to this long-lived and persistent species., (© 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2023
- Full Text
- View/download PDF
11. Historic and contemporary biogeographic perspectives on range-wide spatial genetic structure in a widespread seagrass.
- Author
-
Sinclair EA, Hovey RK, Krauss SL, Anthony JM, Waycott M, and Kendrick GA
- Abstract
Historical and contemporary processes drive spatial patterns of genetic diversity. These include climate-driven range shifts and gene flow mediated by biogeographical influences on dispersal. Assessments that integrate these drivers are uncommon, but critical for testing biogeographic hypotheses. Here, we characterize intraspecific genetic diversity and spatial structure across the entire distribution of a temperate seagrass to test marine biogeographic concepts for southern Australia. Predictive modeling was used to contrast the current Posidonia australis distribution to its historical distribution during the Last Glacial Maximum (LGM). Spatial genetic structure was estimated for 44 sampled meadows from across the geographical range of the species using nine microsatellite loci. Historical and contemporary distributions were similar, with the exception of the Bass Strait. Genetic clustering was consistent with the three currently recognized biogeographic provinces and largely consistent with the finer-scale IMCRA bioregions. Discrepancies were found within the Flindersian province and southwest IMCRA bioregion, while two regions of admixture coincided with transitional IMCRA bioregions. Clonal diversity was highly variable but positively associated with latitude. Genetic differentiation among meadows was significantly associated with oceanographic distance. Our approach suggests how shared seascape drivers have influenced the capacity of P. australis to effectively track sea level changes associated with natural climate cycles over millennia, and in particular, the recolonization of meadows across the Continental Shelf following the LGM. Genetic structure associated with IMCRA bioregions reflects the presence of stable biogeographic barriers, such as oceanic upwellings. This study highlights the importance of biogeography to infer the role of historical drivers in shaping extant diversity and structure., (© 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2023
- Full Text
- View/download PDF
12. Tissue-specific transcriptome profiles identify functional differences key to understanding whole plant response to life in variable salinity.
- Author
-
Booth MW, Breed MF, Kendrick GA, Bayer PE, Severn-Ellis AA, and Sinclair EA
- Subjects
- Gene Ontology, Humans, Photosynthesis, Plant Leaves genetics, Plant Leaves metabolism, Salinity, Transcriptome
- Abstract
Plants endure environmental stressors via adaptation and phenotypic plasticity. Studying these mechanisms in seagrasses is extremely relevant as they are important primary producers and functionally significant carbon sinks. These mechanisms are not well understood at the tissue level in seagrasses. Using RNA-seq, we generated transcriptome sequences from tissue of leaf, basal leaf meristem and root organs of Posidonia australis, establishing baseline in situ transcriptomic profiles for tissues across a salinity gradient. Samples were collected from four P. australis meadows growing in Shark Bay, Western Australia. Analysis of gene expression showed significant differences between tissue types, with more variation among leaves than meristem or roots. Gene ontology enrichment analysis showed the differences were largely due to the role of photosynthesis, plant growth and nutrient absorption in leaf, meristem and root organs, respectively. Differential gene expression of leaf and meristem showed upregulation of salinity regulation processes in higher salinity meadows. Our study highlights the importance of considering leaf meristem tissue when evaluating whole-plant responses to environmental change. This article has an associated First Person interview with the first author of the paper., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2022. Published by The Company of Biologists Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
13. Extensive polyploid clonality was a successful strategy for seagrass to expand into a newly submerged environment.
- Author
-
Edgeloe JM, Severn-Ellis AA, Bayer PE, Mehravi S, Breed MF, Krauss SL, Batley J, Kendrick GA, and Sinclair EA
- Subjects
- Animals, Diploidy, Ecosystem, Polyploidy, Alismatales, Sharks
- Abstract
Polyploidy has the potential to allow organisms to outcompete their diploid progenitor(s) and occupy new environments. Shark Bay, Western Australia, is a World Heritage Area dominated by temperate seagrass meadows including Poseidon's ribbon weed, Posidonia australis . This seagrass is at the northern extent of its natural geographic range and experiences extremes in temperature and salinity. Our genomic and cytogenetic assessments of 10 meadows identified geographically restricted, diploid clones (2 n = 20) in a single location, and a single widespread, high-heterozygosity, polyploid clone (2 n = 40) in all other locations. The polyploid clone spanned at least 180 km, making it the largest known example of a clone in any environment on earth. Whole-genome duplication through polyploidy, combined with clonality, may have provided the mechanism for P. australis to expand into new habitats and adapt to new environments that became increasingly stressful for its diploid progenitor(s). The new polyploid clone probably formed in shallow waters after the inundation of Shark Bay less than 8500 years ago and subsequently expanded via vegetative growth into newly submerged habitats.
- Published
- 2022
- Full Text
- View/download PDF
14. Profiling the cell walls of seagrasses from A (Amphibolis) to Z (Zostera).
- Author
-
Pfeifer L, van Erven G, Sinclair EA, Duarte CM, Kabel MA, and Classen B
- Subjects
- Alismatales genetics, Cell Wall genetics, Indian Ocean, Marine Biology, Mediterranean Sea, Plant Leaves genetics, Plant Roots genetics, Polysaccharides genetics, Species Specificity, Zosteraceae genetics, Adaptation, Biological genetics, Alismatales chemistry, Cell Wall chemistry, Plant Leaves chemistry, Plant Roots chemistry, Polysaccharides chemistry, Zosteraceae chemistry
- Abstract
Background: The polyphyletic group of seagrasses shows an evolutionary history from early monocotyledonous land plants to the marine environment. Seagrasses form important coastal ecosystems worldwide and large amounts of seagrass detritus washed on beaches might also be valuable bioeconomical resources. Despite this importance and potential, little is known about adaptation of these angiosperms to the marine environment and their cell walls., Results: We investigated polysaccharide composition of nine seagrass species from the Mediterranean, Red Sea and eastern Indian Ocean. Sequential extraction revealed a similar seagrass cell wall polysaccharide composition to terrestrial angiosperms: arabinogalactans, pectins and different hemicelluloses, especially xylans and/or xyloglucans. However, the pectic fractions were characterized by the monosaccharide apiose, suggesting unusual apiogalacturonans are a common feature of seagrass cell walls. Detailed analyses of four representative species identified differences between organs and species in their constituent monosaccharide composition and lignin content and structure. Rhizomes were richer in glucosyl units compared to leaves and roots. Enhalus had high apiosyl and arabinosyl abundance, while two Australian species of Amphibolis and Posidonia, were characterized by high amounts of xylosyl residues. Interestingly, the latter two species contained appreciable amounts of lignin, especially in roots and rhizomes whereas Zostera and Enhalus were lignin-free. Lignin structure in Amphibolis was characterized by a higher syringyl content compared to that of Posidonia., Conclusions: Our investigations give a first comprehensive overview on cell wall composition across seagrass families, which will help understanding adaptation to a marine environment in the evolutionary context and evaluating the potential of seagrass in biorefinery incentives., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
15. Restored and remnant Banksia woodlands elicit different foraging behavior in avian pollinators.
- Author
-
Ritchie AL, Elliott CP, Sinclair EA, and Krauss SL
- Abstract
Pollinators and the pollination services they provide are critical for seed set and self-sustainability of most flowering plants. Despite this, pollinators are rarely assessed in restored plant communities, where their services are largely assumed to re-establish. Bird-pollinator richness, foraging, and interaction behavior were compared between natural and restored Banksia woodland sites in Western Australia to assess their re-establishment in restored sites. These parameters were measured for natural communities of varying size and degree of fragmentation, and restored plant communities of high and low complexity for three years, in the summer and winter flowering of Banksia attenuata and B. menziesii , respectively. Bird visitor communities varied in composition, richness, foraging movement distances, and aggression among sites. Bird richness and abundance were lowest in fragmented remnants. Differences in the composition were associated with the size and degree of fragmentation in natural sites, but this did not differ between seasons. Restored sites and their adjacent natural sites had similar species composition, suggesting proximity supports pollinator re-establishment. Pollinator foraging movements were influenced by the territorial behavior of different species. Using a network analysis approach, we found foraging behavior varied, with more frequent aggressive chases observed in restored sites, resulting in more movements out of the survey areas, than observed in natural sites. Aggressors were larger-bodied Western Wattlebirds ( Anthochaera chrysoptera ) and New Holland Honeyeaters ( Phylidonyris novaehollandiae ) that dominated nectar resources, particularly in winter. Restored sites had re-established pollination services, albeit with clear differences, as the degree of variability in the composition and behavior of bird pollinators for Banksias in the natural sites created a broad completion target against which restored sites were assessed. The abundance, diversity, and behavior of pollinator services to remnant and restored Banksia woodland sites were impacted by the size and degree of fragmentation, which in turn influenced bird-pollinator composition, and were further influenced by seasonal changes between summer and winter. Consideration of the spatial and temporal landscape context of restored sites, along with plant community diversity, is needed to ensure the maintenance of the effective movement of pollinators between natural remnant woodlands and restored sites., (© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2021
- Full Text
- View/download PDF
16. Variation in reproductive effort, genetic diversity and mating systems across Posidonia australis seagrass meadows in Western Australia.
- Author
-
Sinclair EA, Edgeloe JM, Anthony JM, Statton J, Breed MF, and Kendrick GA
- Abstract
Populations at the edges of their geographical range tend to have lower genetic diversity, smaller effective population sizes and limited connectivity relative to centre of range populations. Range edge populations are also likely to be better adapted to more extreme conditions for future survival and resilience in warming environments. However, they may also be most at risk of extinction from changing climate. We compare reproductive and genetic data of the temperate seagrass, Posidonia australis on the west coast of Australia. Measures of reproductive effort (flowering and fruit production and seed to ovule ratios) and estimates of genetic diversity and mating patterns (nuclear microsatellite DNA loci) were used to assess sexual reproduction in northern range edge (low latitude, elevated salinities, Shark Bay World Heritage Site) and centre of range (mid-latitude, oceanic salinity, Perth metropolitan waters) meadows in Western Australia. Flower and fruit production were highly variable among meadows and there was no significant relationship between seed to ovule ratio and clonal diversity. However, Shark Bay meadows were two orders of magnitude less fecund than those in Perth metropolitan waters. Shark Bay meadows were characterized by significantly lower levels of genetic diversity and a mixed mating system relative to meadows in Perth metropolitan waters, which had high genetic diversity and a completely outcrossed mating system. The combination of reproductive and genetic data showed overall lower sexual productivity in Shark Bay meadows relative to Perth metropolitan waters. The mixed mating system is likely driven by a combination of local environmental conditions and pollen limitation. These results indicate that seagrass restoration in Shark Bay may benefit from sourcing plant material from multiple reproductive meadows to increase outcrossed pollen availability and seed production for natural recruitment., (© The Author(s) 2020. Published by Oxford University Press on behalf of the Annals of Botany Company.)
- Published
- 2020
- Full Text
- View/download PDF
17. Wide outcrossing provides functional connectivity for new and old Banksia populations within a fragmented landscape.
- Author
-
Ritchie AL, Dyer RJ, Nevill PG, Sinclair EA, and Krauss SL
- Subjects
- Gene Flow, Genetic Variation, Microsatellite Repeats, Pollination, Genetics, Population, Proteaceae
- Abstract
Habitat fragmentation affects landscape connectivity, the extent of which is influenced by the movement capacity of the vectors of seed and pollen dispersal for plants. Negative impacts of reduced connectivity can include reduced fecundity, increased inbreeding, genetic erosion and decreased long-term viability. These are issues for not only old (remnant) populations, but also new (restored) populations. We assessed reproductive and connective functionality within and among remnant and restored populations of a common tree, Banksia menziesii R.Br. (Proteaceae), in a fragmented urban landscape, utilising a genetic and graph theoretical approach. Adult trees and seed cohorts from five remnants and two restored populations were genotyped using microsatellite markers. Genetic variation and pollen dispersal were assessed using direct (paternity assignment) and indirect (pollination graphs and mating system characterisation) methods. Restored populations had greater allelic diversity (Ar = 8.08; 8.34) than remnant populations (Ar range = 6.49-7.41). Genetic differentiation was greater between restored and adjacent remnants (F
ST = 0.03 and 0.10) than all other pairwise comparisons of remnant populations (mean FST = 0.01 ± 0.01; n = 16 P = 0.001). All populations displayed low correlated paternity (rp = 0.06-0.16) with wide-ranging realised pollen dispersal distances (< 1.7 km) and well-connected pollen networks. Here, we demonstrate reproductive and connective functionality of old and new populations of B. menziesii within a fragmented landscape. Due to long-distance pollination events, the physical size of these sites underestimates their effective population size. Thus, they are functionally equivalent to large populations, integrated into a larger landscape matrix.- Published
- 2019
- Full Text
- View/download PDF
18. Seeds in motion: Genetic assignment and hydrodynamic models demonstrate concordant patterns of seagrass dispersal.
- Author
-
Sinclair EA, Ruiz-Montoya L, Krauss SL, Anthony JM, Hovey RK, Lowe RJ, and Kendrick GA
- Subjects
- Australia, Fruit, Genotype, Likelihood Functions, Microsatellite Repeats, Models, Theoretical, Oceans and Seas, Water Movements, Alismatales genetics, Genetics, Population, Hydrodynamics, Seed Dispersal
- Abstract
Movement is fundamental to the ecology and evolutionary dynamics within species. Understanding movement through seed dispersal in the marine environment can be difficult due to the high spatial and temporal variability of ocean currents. We employed a mutually enriching approach of population genetic assignment procedures and dispersal predictions from a hydrodynamic model to overcome this difficulty and quantify the movement of dispersing floating fruit of the temperate seagrass Posidonia australis Hook.f. across coastal waters in south-western Australia. Dispersing fruit cohorts were collected from the water surface over two consecutive years, and seeds were genotyped using microsatellite DNA markers. Likelihood-based genetic assignment tests were used to infer the meadow of origin for seed cohorts and individuals. A three-dimensional hydrodynamic model was coupled with a particle transport model to simulate the movement of fruit at the water surface. Floating fruit cohorts were mainly assigned genetically to the nearest meadow, but significant genetic differentiation between cohort and most likely meadow of origin suggested a mixed origin. This was confirmed by genetic assignment of individual seeds from the same cohort to multiple meadows. The hydrodynamic model predicted 60% of fruit dispersed within 20 km, but that fruit was physically capable of dispersing beyond the study region. Concordance between these two independent measures of dispersal provides insight into the role of physical transport for long distance dispersal of fruit and the consequences for spatial genetic structuring of seagrass meadows., (© 2018 John Wiley & Sons Ltd.)
- Published
- 2018
- Full Text
- View/download PDF
19. Bedless Psychiatry-Rebuilding Behavioral Health Service Capacity.
- Author
-
Sisti DA, Sinclair EA, and Sharfstein SS
- Subjects
- Ambulatory Care organization & administration, Ambulatory Care statistics & numerical data, Ambulatory Care trends, Antipsychotic Agents therapeutic use, Community Mental Health Services organization & administration, Community Mental Health Services statistics & numerical data, Community Mental Health Services trends, Cross-Sectional Studies, Forecasting, Health Policy trends, Health Services Accessibility trends, Health Services Needs and Demand organization & administration, Health Services Needs and Demand statistics & numerical data, Health Services Needs and Demand trends, Humans, Mental Disorders epidemiology, Mental Disorders therapy, Patient Advocacy statistics & numerical data, Patient Advocacy trends, Prisons statistics & numerical data, Prisons trends, Psychiatric Department, Hospital trends, Substance-Related Disorders epidemiology, Substance-Related Disorders therapy, United States, Health Services Accessibility organization & administration, Health Services Accessibility statistics & numerical data, Hospital Bed Capacity statistics & numerical data, Psychiatric Department, Hospital organization & administration, Psychiatric Department, Hospital statistics & numerical data
- Published
- 2018
- Full Text
- View/download PDF
20. Identifying knowledge gaps in seagrass research and management: An Australian perspective.
- Author
-
York PH, Smith TM, Coles RG, McKenna SA, Connolly RM, Irving AD, Jackson EL, McMahon K, Runcie JW, Sherman CDH, Sullivan BK, Trevathan-Tackett SM, Brodersen KE, Carter AB, Ewers CJ, Lavery PS, Roelfsema CM, Sinclair EA, Strydom S, Tanner JE, van Dijk KJ, Warry FY, Waycott M, and Whitehead S
- Subjects
- Australia, Alismatales, Conservation of Natural Resources methods, Ecosystem, Environmental Monitoring methods
- Abstract
Seagrass species form important marine and estuarine habitats providing valuable ecosystem services and functions. Coastal zones that are increasingly impacted by anthropogenic development have experienced substantial declines in seagrass abundance around the world. Australia, which has some of the world's largest seagrass meadows and is home to over half of the known species, is not immune to these losses. In 1999 a review of seagrass ecosystems knowledge was conducted in Australia and strategic research priorities were developed to provide research direction for future studies and management. Subsequent rapid evolution of seagrass research and scientific methods has led to more than 70% of peer reviewed seagrass literature being produced since that time. A workshop was held as part of the Australian Marine Sciences Association conference in July 2015 in Geelong, Victoria, to update and redefine strategic priorities in seagrass research. Participants identified 40 research questions from 10 research fields (taxonomy and systematics, physiology, population biology, sediment biogeochemistry and microbiology, ecosystem function, faunal habitats, threats, rehabilitation and restoration, mapping and monitoring, management tools) as priorities for future research on Australian seagrasses. Progress in research will rely on advances in areas such as remote sensing, genomic tools, microsensors, computer modeling, and statistical analyses. A more interdisciplinary approach will be needed to facilitate greater understanding of the complex interactions among seagrasses and their environment., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
21. Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses.
- Author
-
Kendrick GA, Orth RJ, Statton J, Hovey R, Ruiz Montoya L, Lowe RJ, Krauss SL, and Sinclair EA
- Subjects
- Gene Flow, Genetics, Population, Reproduction, Seeds, Genetic Variation, Magnoliopsida physiology
- Abstract
Accurate estimation of connectivity among populations is fundamental for determining the drivers of population resilience, genetic diversity, adaptation and speciation. However the separation and quantification of contemporary versus historical connectivity remains a major challenge. This review focuses on marine angiosperms, seagrasses, that are fundamental to the health and productivity of temperate and tropical coastal marine environments globally. Our objective is to understand better the role of sexual reproduction and recruitment in influencing demographic and genetic connectivity among seagrass populations through an integrated multidisciplinary assessment of our present ecological, genetic, and demographic understanding, with hydrodynamic modelling of transport. We investigate (i) the demographic consequences of sexual reproduction, dispersal and recruitment in seagrasses, (ii) contemporary transport of seagrass pollen, fruits and seed, and vegetative fragments with a focus on hydrodynamic and particle transport models, and (iii) contemporary genetic connectivity among seagrass meadows as inferred through the application of genetic markers. New approaches are reviewed, followed by a summary outlining future directions for research: integrating seascape genetic approaches; incorporating hydrodynamic modelling for dispersal of pollen, seeds and vegetative fragments; integrating studies across broader geographic ranges; and incorporating non-equilibrium modelling. These approaches will lead to a more integrated understanding of the role of contemporary dispersal and recruitment in the persistence and evolution of seagrasses., (© 2016 Cambridge Philosophical Society.)
- Published
- 2017
- Full Text
- View/download PDF
22. Genotypic richness predicts phenotypic variation in an endangered clonal plant.
- Author
-
Evans SM, Sinclair EA, Poore AG, Bain KF, and Vergés A
- Abstract
Declines in genetic diversity within a species can affect the stability and functioning of populations. The conservation of genetic diversity is thus a priority, especially for threatened or endangered species. The importance of genetic variation, however, is dependent on the degree to which it translates into phenotypic variation for traits that affect individual performance and ecological processes. This is especially important for predominantly clonal species, as no single clone is likely to maximise all aspects of performance. Here we show that intraspecific genotypic diversity as measured using microsatellites is a strong predictor of phenotypic variation in morphological traits and shoot productivity of the threatened, predominantly clonal seagrass Posidonia australis, on the east coast of Australia. Biomass and surface area variation was most strongly predicted by genotypic richness, while variation in leaf chemistry (phenolics and nitrogen) was unrelated to genotypic richness. Genotypic richness did not predict tissue loss to herbivores or epiphyte load, however we did find that increased herbivore damage was positively correlated with allelic richness. Although there was no clear relationship between higher primary productivity and genotypic richness, variation in shoot productivity within a meadow was significantly greater in more genotypically diverse meadows. The proportion of phenotypic variation explained by environmental conditions varied among different genotypes, and there was generally no variation in phenotypic traits among genotypes present in the same meadows. Our results show that genotypic richness as measured through the use of presumably neutral DNA markers does covary with phenotypic variation in functionally relevant traits such as leaf morphology and shoot productivity. The remarkably long lifespan of individual Posidonia plants suggests that plasticity within genotypes has played an important role in the longevity of the species. However, the strong link between genotypic and phenotypic variation suggests that a range of genotypes is still the best case scenario for adaptation to and recovery from predicted environmental change.
- Published
- 2016
- Full Text
- View/download PDF
23. Reproduction at the extremes: pseudovivipary, hybridization and genetic mosaicism in Posidonia australis (Posidoniaceae).
- Author
-
Sinclair EA, Statton J, Hovey R, Anthony JM, Dixon KW, and Kendrick GA
- Subjects
- Alismatales genetics, Alleles, Genetic Variation, Inflorescence physiology, Microsatellite Repeats, Western Australia, Alismatales physiology, Mosaicism, Reproduction physiology
- Abstract
Background and Aims: Organisms occupying the edges of natural geographical ranges usually survive at the extreme limits of their innate physiological tolerances. Extreme and prolonged fluctuations in environmental conditions, often associated with climate change and exacerbated at species' geographical range edges, are known to trigger alternative responses in reproduction. This study reports the first observations of adventitious inflorescence-derived plantlet formation in the marine angiosperm Posidonia australis, growing at the northern range edge (upper thermal and salinity tolerance) in Shark Bay, Western Australia. These novel plantlets are described and a combination of microsatellite DNA markers and flow cytometry is used to determine their origin., Methods: Polymorphic microsatellite DNA markers were used to generate multilocus genotypes to determine the origin of the adventitious inflorescence-derived plantlets. Ploidy and genome size were estimated using flow cytometry., Key Results: All adventitious plantlets were genetically identical to the maternal plant and were therefore the product of a novel pseudoviviparous reproductive event. It was found that 87 % of the multilocus genotypes contained three alleles in at least one locus. Ploidy was identical in all sampled plants. The genome size (2 C value) for samples from Shark Bay and from a separate site much further south was not significantly different, implying they are the same ploidy level and ruling out a complete genome duplication (polyploidy)., Conclusions: Survival at range edges often sees the development of novel responses in the struggle for survival and reproduction. This study documents a physiological response at the trailing edge, whereby reproductive strategy can adapt to fluctuating conditions and suggests that the lower-than-usual water temperature triggered unfertilized inflorescences to 'switch' to growing plantlets that were adventitious clones of their maternal parent. This may have important long-term implications as both genetic and ecological constraints may limit the ability to adapt or range-shift; this seagrass meadow in Shark Bay already has low genetic diversity, no sexual reproduction and no seedling recruitment., (© The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2016
- Full Text
- View/download PDF
24. Acute Vilazodone Toxicity in a Pediatric Patient.
- Author
-
Acker EC, Sinclair EA, Beardsley AL, Ahmed SS, and Froberg BA
- Subjects
- Benzodiazepines therapeutic use, Cyproheptadine therapeutic use, Female, Humans, Infant, Poisoning therapy, Selective Serotonin Reuptake Inhibitors poisoning, Vilazodone Hydrochloride poisoning
- Abstract
Background: Vilazodone is a selective serotonin reuptake inhibitor and 5HT1A agonist recently approved to treat depression in adults. To date, there are minimal data available regarding the expected course and treatment of acute vilazodone ingestions., Case Report: We report a case of a previously healthy 19-month-old girl who presented after an acute ingestion of an estimated 37 mg/kg vilazodone. She was taken to an outside emergency department approximately 1 h after an unwitnessed ingestion. Initially, the patient was noted to have decreased responsiveness, sluggish but reactive pupils, altered mental status, and reported seizure activity. She was given intravenous lorazepam for seizure control, intubated, and transferred to a pediatric tertiary care facility, where she continued to show signs of serotonin toxicity and received treatment with benzodiazepines and cyproheptadine. Despite vilazodone's long half-life and the large amount ingested, the patient was extubated within 10 h of presentation, had returned to baseline mental status by 22 h, and was discharged home approximately 57 h after ingestion. WHY SHOULD AN EMERGENCY PHYSICIAN BE AWARE OF THIS?: Accidental ingestions are common in the pediatric population. Emergency physicians need to be aware of the signs and symptoms of acute medication toxicities, the expected clinical course, and the necessary supportive measures used to treat these patients. Because vilazodone is a recently approved medication, there is little experience with acute vilazodone ingestions. This report considerably increases the understanding of vilazodone's effects in the setting of an acute ingestion., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
25. Implementation of a diuretic stewardship program in a pediatric cardiovascular intensive care unit to reduce medication expenditures.
- Author
-
Thomas CA, Morris JL, Sinclair EA, Speicher RH, Ahmed SS, and Rotta AT
- Subjects
- Administration, Intravenous, Cardiac Surgical Procedures economics, Cardiac Surgical Procedures methods, Child, Chlorothiazide economics, Cost Savings, Diuretics economics, Ethacrynic Acid economics, Humans, Length of Stay, Program Development, Program Evaluation, Retrospective Studies, Ventilators, Mechanical statistics & numerical data, Chlorothiazide administration & dosage, Diuretics administration & dosage, Ethacrynic Acid administration & dosage, Intensive Care Units, Pediatric economics
- Abstract
Purpose: The implementation of a diuretic stewardship program in a pediatric cardiovascular intensive care unit (ICU) is described., Methods: This retrospective study compared the use of i.v. chlorothiazide and i.v. ethacrynic acid in pediatric cardiovascular surgery patients before and after implementation of a diuretic stewardship program. All pediatric patients admitted to the pediatric cardiovascular service were included. The cardiovascular surgery service was educated on formal indications for specific diuretic agents, and the diuretic stewardship program was implemented on January 1, 2013. Under the stewardship program, i.v. ethacrynic acid was indicated in patients with a sulfonamide allergy, and i.v. chlorothiazide was considered appropriate in patients receiving maximized i.v. loop diuretic doses. A detailed review of the pharmacy database and medical records was performed for each patient to determine i.v. chlorothiazide and i.v. ethacrynic acid use and expenditures, appropriateness of use, days using a ventilator, and cardiovascular ICU length of stay., Results: After implementation of diuretic stewardship, the use of i.v. chlorothiazide decreased by 74% (531 fewer doses) while i.v. ethacrynic acid use decreased by 92% (47 fewer doses), resulting in a total reduction of $91,398 in expenditures on these diuretics over the six-month study period and an estimated annual saving of over $182,000. The median number of days using a ventilator and the length of ICU stay did not differ significantly during the study period., Conclusion: Implementation of a diuretic stewardship program reduced the use of i.v. chlorothiazide and i.v. ethacrynic acid without adversely affecting clinical outcomes such as ventilator days and length of stay in a pediatric cardiovascular ICU., (Copyright © 2015 by the American Society of Health-System Pharmacists, Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
26. Antimicrobial prophylaxis for external ventricular drains in pediatric neurosurgical patients.
- Author
-
Ifeachor AP, Nichols KR, Morris JL, Cox EG, Smith JL, and Sinclair EA
- Subjects
- Anti-Bacterial Agents therapeutic use, Central Nervous System Infections prevention & control, Child, Child, Preschool, Female, Humans, Male, Retrospective Studies, Anti-Bacterial Agents administration & dosage, Antibiotic Prophylaxis methods, Cerebrospinal Fluid Shunts
- Abstract
Background: Our goal was to describe the use of antibiotics for surgical prophylaxis of external ventricular drains (EVDs) in a pediatric neurosurgical population and determine the incidence of EVD-related infections among different antimicrobial prophylaxis strategies., Main Outcome Measures: This retrospective chart review included patients up to 18 years old who underwent EVD insertion at either of two tertiary care academic hospitals in the same health system between August 1, 2008, and July 31, 2012. Patients were included if they received at least one dose of antibiotics before EVD insertion. Patients who received only perioperative antibiotics were compared with those who also received antibiotics after this period. The primary endpoint was incidence of EVD-related infection. Descriptive statistics were used to summarize baseline characteristics and compare antibiotic regimens between groups. Pearson's chi square and Mann Whitney U tests compared nonparametric data., Results: A total of 182 EVD insertions were documented, and 88 included in the study. Of these 88, 27 were associated only with perioperative doses of antibiotics, and 61 with prolonged antibiotic use. Baseline characteristics and antibiotic choices were similar between the groups. At least 55 (63%) catheters were antibiotic-impregnated, but types of catheters couldn't be compared between groups due to insufficient data. No central nervous system infections were identified in either group, so the primary objective could not be evaluated statistically., Conclusion: No infections were identified in any study subjects during EVD treatment. An adequately powered, multi-center prospective study should be performed to determine if prolonged use of antibiotics beyond the perioperative period is of benefit.
- Published
- 2015
- Full Text
- View/download PDF
27. Characterization of dexmedetomidine dosing and safety in neonates and infants.
- Author
-
Estkowski LM, Morris JL, and Sinclair EA
- Abstract
Objectives: To describe and compare off-label use and cardiovascular (CV) adverse effects of dexmedetomidine in neonates and infants in the pediatric intensive care unit (PICU)., Methods: Patients younger than 12 months with corrected gestational ages of at least 37 weeks who were receiving continuous infusion of dexmedetomidine at a tertiary pediatric referral center between October 2007 and August 2012 were assessed retrospectively. Patients were excluded if dexmedetomidine was used for procedural sedation, postoperative CV surgery, or if postanesthesia infusion weaning orders existed at the time of PICU admission., Results: The median minimum dexmedetomidine dose was similar between infants and neonates at 0.2 mcg/kg/hr (IQR, 0.17-0.3) versus 0.29 mcg/kg/hr (IQR, 0.2-0.31), p = 0.35. The median maximum dose was higher for infants than neonates (0.6 mcg/kg/hr [IQR, 0.4-0.8] vs. 0.4 mcg/kg/hr [IQR, 0.26-0.6], p < 0.01). Additional sedative use was more common in infants than neonates (75/99 [76%] vs. 15/28 [54%], p = 0.02). At least 1 episode of hypotension was noted in 34/127 (27%) patients and was similar between groups. An episode of bradycardia was identified more frequently in infants than neonates (55/99 [56%] vs. 2/28 [7%], p < 0.01). Significant reduction in heart rate and systolic blood pressure was noted when comparing baseline vital signs to lowest heart rate and systolic blood pressure during infusion (p < 0.01)., Conclusions: Dexmedetomidine dose ranges were similar to US Food and Drug Administration-labeled dosages for intensive care unit sedation in adults. More infants than neonates experienced a bradycardia episode, but infants were also more likely to receive higher dosages of dexmedetomidine and additional sedatives.
- Published
- 2015
- Full Text
- View/download PDF
28. Factors associated with acute kidney injury in children receiving vancomycin.
- Author
-
Sinclair EA, Yenokyan G, McMunn A, Fadrowski JJ, Milstone AM, and Lee CK
- Subjects
- Academic Medical Centers, Acute Kidney Injury epidemiology, Adolescent, Child, Child, Preschool, Female, Hospitals, Pediatric, Humans, Incidence, Infant, Male, Odds Ratio, Retrospective Studies, Risk Factors, Tertiary Care Centers, Acute Kidney Injury chemically induced, Anti-Bacterial Agents adverse effects, Vancomycin adverse effects
- Abstract
Background: As higher vancomycin doses have been used in children, concern for acute kidney injury (AKI) has increased. Data describing factors associated with AKI, particularly dose-related factors, are limited., Objective: To determine the incidence of AKI in children receiving intravenous vancomycin and to identify factors associated with increased odds of AKI., Methods: A retrospective review of patients admitted to a tertiary academic pediatric hospital from February 2009 to September 2010 was performed. Patients 3 months to <19 years old with normal kidney function, receiving vancomycin for at least 48 hours were included. Incidence of AKI was assessed as defined by the Pediatric-Modified RIFLE criteria. Patients with and without AKI were compared to determine factors associated with increased odds of AKI, focusing on vancomycin dose., Results: Of 175 patients included, 24 (13.7%) met AKI criteria. In a multivariate regression, likelihood of AKI increased with each 5 mg/kg increase in vancomycin dose (odds ratio [OR] = 1.16; 95% CI = 1.01-1.33). Odds of AKI increased with each additional day of therapy (OR = 1.11; 95% CI = 1.01-1.22) and use of concomitant nephrotoxic medications (OR = 5.02; 95% CI = 1.09-23.19). The study was limited by small sample size and retrospective design., Conclusions: AKI was common in children receiving vancomycin. Higher doses of vancomycin were associated with increased odds of AKI. The risks and benefits of higher vancomycin dosing should be considered for each patient. Patients should be monitored closely for AKI, especially with higher doses, extended durations of therapy, or concomitant use of nephrotoxic medications., (© The Author(s) 2014.)
- Published
- 2014
- Full Text
- View/download PDF
29. Against the odds: complete outcrossing in a monoecious clonal seagrass Posidonia australis (Posidoniaceae).
- Author
-
Sinclair EA, Gecan I, Krauss SL, and Kendrick GA
- Subjects
- Alismatales genetics, Alismatales metabolism, Polymerase Chain Reaction, Reproduction, Sequence Analysis, DNA, Western Australia, Alismatales physiology, Genetic Variation, Inbreeding
- Abstract
Background and Aims: Seagrasses are marine, flowering plants with a hydrophilous pollination strategy. In these plants, successful mating requires dispersal of filamentous pollen grains through the water column to receptive stigmas. Approximately 40 % of seagrass species are monoecious, and therefore little pollen movement is required if inbreeding is tolerated. Outcrossing in these species is further impacted by clonality, which is variable, but can be extensive in large, dense meadows. Despite this, little is known about the interaction between clonal structure, genetic diversity and mating systems in hydrophilous taxa., Methods: Polymorphic microsatellite DNA markers were used to characterize genetic diversity, clonal structure, mating system and realized pollen dispersal in two meadows of the temperate, monoecious seagrass, Posidonia australis, in Cockburn Sound, Western Australia., Key Results: Within the two sampled meadows, genetic diversity was moderate among the maternal shoots (R = 0·45 and 0·64) and extremely high in the embryos (R = 0·93-0·97). Both meadows exhibited a highly clumping (or phalanx) structure among clones, with spatial autocorrelation analysis showing significant genetic structure among shoots and embryos up to 10-15 m. Outcrossing rates were not significantly different from one. Pollen dispersal distances inferred from paternity assignment averaged 30·8 and 26·8 m, which was larger than the mean clone size (12·8 and 13·8 m)., Conclusions: These results suggest highly effective movement of pollen in the water column. Despite strong clonal structure and moderate genetic diversity within meadows, hydrophilous pollination is an effective vector for completely outcrossed offspring. The different localized water conditions at each site (highly exposed conditions vs. weak directional flow) appear to have little influence on the success and pattern of successful pollination in the two meadows., (© The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2014
- Full Text
- View/download PDF
30. Phylogenetic relationships within the lizard clade Xantusiidae: using trees and divergence times to address evolutionary questions at multiple levels.
- Author
-
Noonan BP, Pramuk JB, Bezy RL, Sinclair EA, de Queiroz K, and Sites JW Jr
- Subjects
- Animals, Bayes Theorem, Body Size, California, Cuba, DNA, Mitochondrial genetics, Genetic Variation, Genetics, Population, Lizards genetics, Phylogeography, Population Dynamics, Sequence Analysis, DNA, Time Factors, Cell Nucleus genetics, DNA, Mitochondrial classification, Genetic Speciation, Lizards classification, Phylogeny
- Abstract
Xantusiidae (night lizards) is a clade of small-bodied, cryptic lizards endemic to the New World. The clade is characterized by several features that would benefit from interpretation in a phylogenetic context, including: (1) monophyletic status of extant taxa Cricosaura, Lepidophyma, and Xantusia; (2) a species endemic to Cuba (Cricosaura typica) of disputed age; (3) origins of the parthenogenetic species of Lepidophyma; (4) pronounced micro-habitat differences accompanied by distinct morphologies in both Xantusia and Lepidophyma; and (5) placement of Xantusia riversiana, the only vertebrate species endemic to the California Channel Islands, which is highly divergent from its mainland relatives. This study incorporates extensive new character data from multiple gene regions to investigate the phylogeny of Xantusiidae using the most comprehensive taxonomic sampling available to date. Parsimony and partitioned Bayesian analyses of more than 7 kb of mitochondrial and nuclear sequence data from 11 loci all confirm that Xantusiidae is monophyletic, and comprises three well-supported clades: Cricosaura, Xantusia, and Lepidophyma. The Cuban endemic Cricosaura typica is well supported as the sister to all other xantusiids. Estimates of divergence time indicate that Cricosaura diverged from the (Lepidophyma+Xantusia) clade ≈ 81 million years ago (Ma), a time frame consistent with the separation of the Antilles from North America. Our results also confirm and extend an earlier study suggesting that parthenogenesis has arisen at least twice within Lepidophyma without hybridization, that rock-crevice ecomorphs evolved numerous times (>9) within Xantusia and Lepidophyma, and that the large-bodied Channel Island endemic X. riversiana is a distinct, early lineage that may form the sister group to the small-bodied congeners of the mainland., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
31. An ecological genetic delineation of local seed-source provenance for ecological restoration.
- Author
-
Krauss SL, Sinclair EA, Bussell JD, and Hobbs RJ
- Abstract
An increasingly important practical application of the analysis of spatial genetic structure within plant species is to help define the extent of local provenance seed collection zones that minimize negative impacts in ecological restoration programs. Here, we derive seed sourcing guidelines from a novel range-wide assessment of spatial genetic structure of 24 populations of Banksia menziesii (Proteaceae), a widely distributed Western Australian tree of significance in local ecological restoration programs. An analysis of molecular variance (AMOVA) of 100 amplified fragment length polymorphism (AFLP) markers revealed significant genetic differentiation among populations (ΦPT = 0.18). Pairwise population genetic dissimilarity was correlated with geographic distance, but not environmental distance derived from 15 climate variables, suggesting overall neutrality of these markers with regard to these climate variables. Nevertheless, Bayesian outlier analysis identified four markers potentially under selection, although these were not correlated with the climate variables. We calculated a global R-statistic using analysis of similarities (ANOSIM) to test the statistical significance of population differentiation and to infer a threshold seed collection zone distance of ∼60 km (all markers) and 100 km (outlier markers) when genetic distance was regressed against geographic distance. Population pairs separated by >60 km were, on average, twice as likely to be significantly genetically differentiated than population pairs separated by <60 km, suggesting that habitat-matched sites within a 30-km radius around a restoration site genetically defines a local provenance seed collection zone for B. menziesii. Our approach is a novel probability-based practical solution for the delineation of a local seed collection zone to minimize negative genetic impacts in ecological restoration.
- Published
- 2013
- Full Text
- View/download PDF
32. Low molecular weight fibroblast growth factor-2 signals via protein kinase C and myofibrillar proteins to protect against postischemic cardiac dysfunction.
- Author
-
Manning JR, Perkins SO, Sinclair EA, Gao X, Zhang Y, Newman G, Pyle WG, and Schultz Jel J
- Subjects
- Actomyosin metabolism, Animals, Blotting, Western, Ca(2+) Mg(2+)-ATPase metabolism, Female, Fibroblast Growth Factor 2 genetics, Fibroblast Growth Factor 2 metabolism, L-Lactate Dehydrogenase metabolism, Male, Mice, Mice, Knockout, Molecular Weight, Myocardial Contraction physiology, Myocardial Reperfusion Injury physiopathology, Phosphorylation physiology, Receptors, Fibroblast Growth Factor metabolism, Troponin I metabolism, Troponin T metabolism, Fibroblast Growth Factor 2 physiology, Myocardial Ischemia drug therapy, Myocardial Ischemia physiopathology, Myofibrils metabolism, Protein Kinase C physiology
- Abstract
Among its many biological roles, fibroblast growth factor-2 (FGF2) acutely protects the heart from dysfunction associated with ischemia/reperfusion (I/R) injury. Our laboratory has demonstrated that this is due to the activity of the low molecular weight (LMW) isoform of FGF2 and that FGF2-mediated cardioprotection relies on the activity of protein kinase C (PKC); however, which PKC isoforms are responsible for LMW FGF2-mediated cardioprotection, and their downstream targets, remain to be elucidated. To identify the PKC pathway(s) that contributes to postischemic cardiac recovery by LMW FGF2, mouse hearts expressing only LMW FGF2 (HMWKO) were bred to mouse hearts not expressing PKCα (PKCαKO) or subjected to a selective PKCε inhibitor (εV(1-2)) before and during I/R. Hearts only expressing LMW FGF2 showed significantly improved postischemic recovery of cardiac function following I/R (P < 0.05), which was significantly abrogated in the absence of PKCα (P < 0.05) or presence of PKCε inhibition (P < 0.05). Hearts only expressing LMW FGF2 demonstrated differences in actomyosin ATPase activity as well as increases in the phosphorylation of troponin I and T during I/R compared with wild-type hearts; several of these effects were dependent on PKCα activity. This evidence indicates that both PKCα and PKCε play a role in LMW FGF2-mediated protection from cardiac dysfunction and that PKCα signaling to the contractile apparatus is a key step in the mechanism of LMW FGF2-mediated protection against myocardial dysfunction.
- Published
- 2013
- Full Text
- View/download PDF
33. Ecological specialization in mycorrhizal symbiosis leads to rarity in an endangered orchid.
- Author
-
Swarts ND, Sinclair EA, Francis A, and Dixon KW
- Subjects
- Conservation of Natural Resources, DNA, Fungal genetics, Germination, Orchidaceae growth & development, Phylogeny, Sequence Analysis, DNA, Species Specificity, Western Australia, Mycorrhizae genetics, Orchidaceae microbiology, Symbiosis
- Abstract
Terrestrial orchid germination, growth and development are closely linked to the establishment and maintenance of a relationship with a mycorrhizal fungus. Mycorrhizal dependency and specificity varies considerably between orchid taxa but the degree to which this underpins rarity in orchids is unknown. In the context of examining orchid rarity, large scale in vitro and in situ germination trials complemented by DNA sequencing were used to investigate ecological specialization in the mycorrhizal interaction of the rare terrestrial orchid Caladenia huegelii. Common and widespread sympatric orchid congeners were used for comparative purposes. Germination trials revealed an absolute requirement for mycorrhisation with compatibility barriers to germination limiting C. huegelii to a highly specific and range limited, efficacious mycorrhizal fungus. DNA sequencing confirmed fidelity between orchid and fungus across the distribution range of C. huegelii and at key life history stages within its life cycle. It was also revealed that common congeners could swap or share fungal partners including the fungus associated with the rare orchid but not vice versa. Data from this study provides evidence for orchid rarity as a cause and consequence of high mycorrhizal specialization. This interaction must be taken into account in efforts to mitigate the significant extinction risk for this species from anthropogenically induced habitat change and illustrates the importance of understanding fungal specificity in orchid ecology and conservation.
- Published
- 2010
- Full Text
- View/download PDF
34. DNA evidence for nonhybrid origins of parthenogenesis in natural populations of vertebrates.
- Author
-
Sinclair EA, Pramuk JB, Bezy RL, Crandall KA, and Sites JW Jr
- Subjects
- Animals, DNA, Satellite genetics, Phylogeny, Polymerase Chain Reaction, Parthenogenesis, Vertebrates physiology
- Abstract
Naturally occurring unisexual reproduction has been documented in less than 0.1% of all vertebrate species. Among vertebrates, true parthenogenesis is known only in squamate reptiles. In all vertebrate cases that have been carefully studied, the clonal or hemiclonal taxa have originated through hybridization between closely related sexual species. In contrast, parthenogenetic reproduction has arisen in invertebrates by a variety of mechanisms, including likely cases of "spontaneous" (nonhybrid) origin, a situation not currently documented in natural populations of vertebrates. Here, we present molecular data from the Neotropical night lizard genus Lepidophyma that provides evidence of independent nonhybrid origins for diploid unisexual populations of two species from Costa Rica and Panama. Our mitochondrial and nuclear phylogenies are congruent with respect to the unisexual taxa. Based on 14 microsatellite loci, heterozygosity (expected from a hybrid origin) is low in Lepidophyma reticulatum and completely absent in unisexual L. flavimaculatum. The unique value of this system will allow direct comparative studies between parthenogenetic and sexual lineages in vertebrates, with an enormous potential for this species to be a model system for understanding the mechanisms of nonhybrid parthenogenesis.
- Published
- 2010
- Full Text
- View/download PDF
35. Pharyngeal cyst in a 5-year-old Dutch Warmblood.
- Author
-
Sinclair EA
- Subjects
- Animals, Cysts diagnosis, Cysts surgery, Female, Horse Diseases surgery, Horses, Pharyngeal Diseases diagnosis, Pharyngeal Diseases surgery, Treatment Outcome, Cysts veterinary, Horse Diseases diagnosis, Pharyngeal Diseases veterinary
- Abstract
A pharyngeal cyst was diagnosed in a 5-year-old Dutch Warmblood mare, after presentation for coughing, dyspnea, and abnormal respiratory noise. Complete surgical excision was performed and the mare returned to normal function and performance. Histopathology found no evidence of thyroglossal duct remnants.
- Published
- 2008
36. Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA.
- Author
-
Shull HC, Pérez-Losada M, Blair D, Sewell K, Sinclair EA, Lawler S, Ponniah M, and Crandall KA
- Subjects
- Animals, Astacoidea genetics, Australia, Base Sequence, Bayes Theorem, Ecosystem, Fresh Water, Geography, Likelihood Functions, Markov Chains, Models, Genetic, Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, DNA, Astacoidea classification, DNA, Mitochondrial, Evolution, Molecular, Phylogeny
- Abstract
Euastacus crayfish are endemic to freshwater ecosystems of the eastern coast of Australia. While recent evolutionary studies have focused on a few of these species, here we provide a comprehensive phylogenetic estimate of relationships among the species within the genus. We sequenced three mitochondrial gene regions (COI, 16S, and 12S) and one nuclear region (28S) from 40 species of the genus Euastacus, as well as one undescribed species. Using these data, we estimated the phylogenetic relationships within the genus using maximum-likelihood, parsimony, and Bayesian Markov Chain Monte Carlo analyses. Using Bayes factors to test different model hypotheses, we found that the best phylogeny supports monophyletic groupings of all but two recognized species and suggests a widespread ancestor that diverged by vicariance. We also show that Euastacus and Astacopsis are most likely monophyletic sister genera. We use the resulting phylogeny as a framework to test biogeographic hypotheses relating to the diversification of the genus.
- Published
- 2005
- Full Text
- View/download PDF
37. Testing species boundaries in an ancient species complex with deep phylogeographic history: genus Xantusia (Squamata: Xantusiidae).
- Author
-
Sinclair EA, Bezy RL, Bolles K, Camarillo JL, Crandall KA, and Sites JW Jr
- Subjects
- Animals, Cytochromes b genetics, DNA, Mitochondrial genetics, Molecular Sequence Data, NADH Dehydrogenase genetics, Protein Subunits, Time Factors, Biological Evolution, Genetic Speciation, Lizards genetics, Lizards physiology
- Abstract
Identification of species in natural populations has recently received increased attention with a number of investigators proposing rigorous methods for species delimitation. Morphologically conservative species (or species complexes) with deep phylogenetic histories (and limited gene flow) are likely to pose particular problems when attempting to delimit species, yet this is crucial to comparative studies of the geography of speciation. We apply two methods of species delimitation to an ancient group of lizards (genus Xantusia) that occur throughout southwestern North America. Mitochondrial cytochrome b and nicotinamide adenine dinucleotide dehydrogenase subunit 4 gene sequences were generated from samples taken throughout the geographic range of Xantusia. Maximum likelihood, Bayesian, and nested cladogram analyses were used to estimate relationships among haplotypes and to infer evolutionary processes. We found multiple well-supported independent lineages within Xantusia, for which there is considerable discordance with the currently recognized taxonomy. High levels of sequence divergence (21.3%) suggest that the pattern in Xantusia may predate the vicariant events usually hypothesized for the fauna of the Baja California peninsula, and the existence of deeply divergent clades (18.8%-26.9%) elsewhere in the complex indicates the occurrence of ancient sundering events whose genetic signatures were not erased by the late Wisconsin vegetation changes. We present a revised taxonomic arrangement for this genus consistent with the distinct mtDNA lineages and discuss the phylogeographic history of this genus as a model system for studies of speciation in North American deserts.
- Published
- 2004
- Full Text
- View/download PDF
38. A method of closure of the abdominal wall defect in exstrophy of the bladder.
- Author
-
STEFFENSEN WH, RYAN JA, and SINCLAIR EA
- Subjects
- Humans, Abdominal Cavity, Abdominal Wall abnormalities, Bladder Exstrophy, Skin Transplantation, Urinary Bladder abnormalities
- Published
- 1956
- Full Text
- View/download PDF
39. Treatment of primary hydrocele. A review of 302 cases.
- Author
-
Undre AR, Talwalkar MG, Tilak GH, and Sinclair EA
- Subjects
- Adolescent, Adult, Aged, Child, Child, Preschool, Humans, Infant, Male, Middle Aged, Testicular Hydrocele drug therapy, Testicular Hydrocele surgery
- Published
- 1966
40. The repair of the unilateral cleft lip.
- Author
-
SINCLAIR EA and STEFFENSEN WH
- Subjects
- Humans, Cleft Lip surgery, Wound Healing
- Published
- 1956
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.