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9. Pollination supply models from a local to global scale

Author

Giménez-García, A., Allen-Perkins, A., Bartomeus, I., Balbi, S., Knapp, J.L., Hevia, V., Woodcock, B.A., Smagghe, G., Miñarro, M., Eeraerts, M., Colville, J.F., Hipólito, J., Cavigliasso, P., Nates-Parra, G., Herrera, J.M., Cusser, S., Simmons, B.I., Wolters, V., Jha, S., Freitas, B.M., Horgan, F.G., Artz, A.R., Sidhu, C.S., Otieno, M., Boreux, V., Biddinger, D.J., Klein, A.M., Joshi, N.K., Stewart, R.I.A., Albrecht, M., Nicholson, C.C., O'Reilly, A.D., Crowder, D.W., Burns, K.L.W., Nabaes Jodar, D.N., Garibaldi, L.A., Sutter, L., Dupont, Y.L., Dalsgaard, B., Da Encarnação Coutinho, J.G., Lázaro, A., Andersson, G.K.S., Raine, N.E., Krishnan, S., Dainese, M., Van Der Werf, W., Smith, H.G., Magrach, A., Giménez-García, A., Allen-Perkins, A., Bartomeus, I., Balbi, S., Knapp, J.L., Hevia, V., Woodcock, B.A., Smagghe, G., Miñarro, M., Eeraerts, M., Colville, J.F., Hipólito, J., Cavigliasso, P., Nates-Parra, G., Herrera, J.M., Cusser, S., Simmons, B.I., Wolters, V., Jha, S., Freitas, B.M., Horgan, F.G., Artz, A.R., Sidhu, C.S., Otieno, M., Boreux, V., Biddinger, D.J., Klein, A.M., Joshi, N.K., Stewart, R.I.A., Albrecht, M., Nicholson, C.C., O'Reilly, A.D., Crowder, D.W., Burns, K.L.W., Nabaes Jodar, D.N., Garibaldi, L.A., Sutter, L., Dupont, Y.L., Dalsgaard, B., Da Encarnação Coutinho, J.G., Lázaro, A., Andersson, G.K.S., Raine, N.E., Krishnan, S., Dainese, M., Van Der Werf, W., Smith, H.G., and Magrach, A.

Abstract

Ecological intensification has been embraced with great interest by the academic sector but is still rarely taken up by farmers because monitoring the state of different ecological functions is not straightforward. Modelling tools can represent a more accessible alternative of measuring ecological functions, which could help promote their use amongst farmers and other decision-makers. In the case of crop pollination, modelling has traditionally followed either a mechanistic or a data-driven approach. Mechanistic models simulate the habitat preferences and foraging behaviour of pollinators, while data-driven models associate georeferenced variables with real observations. Here, we test these two approaches to predict pollination supply and validate these predictions using data from a newly released global dataset on pollinator visitation rates to different crops. We use one of the most extensively used models for the mechanistic approach, while for the data-driven approach, we select from among a comprehensive set of state-of-The-Art machine-learning models. Moreover, we explore a mixed approach, where data-derived inputs, rather than expert assessment, inform the mechanistic model. We find that, at a global scale, machine-learning models work best, offering a rank correlation coefficient between predictions and observations of pollinator visitation rates of 0.56. In turn, the mechanistic model works moderately well at a global scale for wild bees other than bumblebees. Biomes characterized by temperate or Mediterranean forests show a better agreement between mechanistic model predictions and observations, probably due to more comprehensive ecological knowledge and therefore better parameterization of input variables for these biomes. This study highlights the challenges of transferring input variables across multiple biomes, as expected given the different composition of species in different biomes. Our results provide clear guidance on which pollination supply mode

Published
2023

12. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, J, Adkins, S, Agwanda, B, Al Kubrusli, R, Alkhovsky, S, Amarasinghe, G, Avsic-Zupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Basler, C, Bavari, S, Beer, M, Bejerman, N, Bennett, A, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Blystad, D, Bojko, J, Borth, W, Bradfute, S, Breyta, R, Briese, T, Brown, P, Brown, J, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buttner, C, Calisher, C, Cao, M, Casas, I, Chandran, K, Charrel, R, Cheng, Q, Chiaki, Y, Chiapello, M, Choi, I, Ciuffo, M, Clegg, J, Crozier, I, Dal Bo, E, de la Torre, J, de Lamballerie, X, de Swart, R, Debat, H, Dheilly, N, Di Cicco, E, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolnik, O, Drebot, M, Drexler, J, Dundon, W, Duprex, W, Durrwald, R, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Ferguson, H, Fooks, A, Forgia, M, Formenty, P, Franova, J, Freitas-Astua, J, Fu, J, Furl, S, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gaskin, T, Gonzalez, J, Griffiths, A, Goldberg, T, Groschup, M, Gunther, S, Hall, R, Hammond, J, Han, T, Hepojoki, J, Hewson, R, Hong, J, Hong, N, Hongo, S, Horie, M, Hu, J, Hu, T, Hughes, H, Huttner, F, Hyndman, T, Ilyas, M, Jalkanen, R, Jiang, D, Jonson, G, Junglen, S, Kadono, F, Kaukinen, K, Kawate, M, Klempa, B, Klingstrom, J, Kobinger, G, Koloniuk, I, Kondo, H, Koonin, E, Krupovic, M, Kubota, K, Kurath, G, Laenen, L, Lambert, A, Langevin, S, Lee, B, Lefkowitz, E, Leroy, E, Li, S, Li, L, Li, J, Liu, H, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Marzano, S, Massart, S, Mccauley, J, Melzer, M, Mielke-Ehret, N, Miller, K, Ming, T, Mirazimi, A, Mordecai, G, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Olmedo-Velarde, A, Palacios, G, Pallas, V, Palyi, B, Papa, A, Paraskevopoulou, S, Park, A, Parrish, C, Patterson, D, Pauvolid-Correa, A, Paweska, J, Payne, S, Peracchio, C, Perez, D, Postler, T, Qi, L, Radoshitzky, S, Resende, R, Reyes, C, Rima, B, Luna, G, Romanowski, V, Rota, P, Rubbenstroth, D, Rubino, L, Runstadler, J, Sabanadzovic, S, Sall, A, Salvato, M, Sang, R, Sasaya, T, Schulze, A, Schwemmle, M, Shi, M, Shi, X, Shi, Z, Shimomoto, Y, Shirako, Y, Siddell, S, Simmonds, P, Sironi, M, Smagghe, G, Smither, S, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Sugano, J, Suttle, C, Tabata, A, Takada, A, Takeuchi, S, Tchouassi, D, Teffer, A, Tesh, R, Thornburg, N, Tomitaka, Y, Tomonaga, K, Tordo, N, Torto, B, Towner, J, Tsuda, S, Tu, C, Turina, M, Tzanetakis, I, Uchida, J, Usugi, T, Vaira, A, Vallino, M, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, von Bargen, S, Wada, J, Wahl, V, Walker, P, Wang, L, Wang, G, Wang, Y, Waqas, M, Wei, T, Wen, S, Whitfield, A, Williams, J, Wolf, Y, Wu, J, Xu, L, Yanagisawa, H, Yang, C, Yang, Z, Zerbini, F, Zhai, L, Zhang, Y, Zhang, S, Zhang, J, Zhang, Z, Zhou, X, Kuhn JH, Adkins S, Agwanda BR, Al Kubrusli R, Alkhovsky SV, Amarasinghe GK, Avsic-Zupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron E, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buttner C, Calisher CH, Cao MJ, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki Y, Chiapello M, Choi I, Ciuffo M, Clegg JCS, Crozier I, Dal Bo E, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Durrwald R, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Franova J, Freitas-Astua J, Fu JJ, Furl S, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Gunther S, Hall RA, Hammond J, Han T, Hepojoki J, Hewson R, Hong J, Hong N, Hongo S, Horie M, Hu JS, Hu T, Hughes HR, Huttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiang DH, Jonson GB, Junglen S, Kadono F, Kaukinen KH, Kawate M, Klempa B, Klingstrom J, Kobinger G, Koloniuk I, Kondo H, Koonin EV, Krupovic M, Kubota K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li SR, Li LH, Li JR, Liu HZ, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallas V, Palyi B, Papa A, Paraskevopoulou S, Park AC, Parrish CR, Patterson DA, Pauvolid-Correa A, Paweska JT, Payne S, Peracchio C, Perez DR, Postler TS, Qi LY, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang RS, Sasaya T, Schulze AD, Schwemmle M, Shi M, Shi XH, Shi ZL, Shimomoto Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada A, Takeuchi S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka Y, Tomonaga K, Tordo N, Torto B, Towner JS, Tsuda S, Tu CC, Turina M, Tzanetakis IE, Uchida J, Usugi T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang LF, Wang GP, Wang YX, Wang YQ, Waqas M, Wei TY, Wen SH, Whitfield AE, Williams JV, Wolf YI, Wu JX, Xu L, Yanagisawa H, Yang CX, Yang ZK, Zerbini FM, Zhai L, Zhang YZ, Zhang S, Zhang JG, Zhang Z, Zhou XP, Kuhn, J, Adkins, S, Agwanda, B, Al Kubrusli, R, Alkhovsky, S, Amarasinghe, G, Avsic-Zupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Basler, C, Bavari, S, Beer, M, Bejerman, N, Bennett, A, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Blystad, D, Bojko, J, Borth, W, Bradfute, S, Breyta, R, Briese, T, Brown, P, Brown, J, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buttner, C, Calisher, C, Cao, M, Casas, I, Chandran, K, Charrel, R, Cheng, Q, Chiaki, Y, Chiapello, M, Choi, I, Ciuffo, M, Clegg, J, Crozier, I, Dal Bo, E, de la Torre, J, de Lamballerie, X, de Swart, R, Debat, H, Dheilly, N, Di Cicco, E, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolnik, O, Drebot, M, Drexler, J, Dundon, W, Duprex, W, Durrwald, R, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Ferguson, H, Fooks, A, Forgia, M, Formenty, P, Franova, J, Freitas-Astua, J, Fu, J, Furl, S, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gaskin, T, Gonzalez, J, Griffiths, A, Goldberg, T, Groschup, M, Gunther, S, Hall, R, Hammond, J, Han, T, Hepojoki, J, Hewson, R, Hong, J, Hong, N, Hongo, S, Horie, M, Hu, J, Hu, T, Hughes, H, Huttner, F, Hyndman, T, Ilyas, M, Jalkanen, R, Jiang, D, Jonson, G, Junglen, S, Kadono, F, Kaukinen, K, Kawate, M, Klempa, B, Klingstrom, J, Kobinger, G, Koloniuk, I, Kondo, H, Koonin, E, Krupovic, M, Kubota, K, Kurath, G, Laenen, L, Lambert, A, Langevin, S, Lee, B, Lefkowitz, E, Leroy, E, Li, S, Li, L, Li, J, Liu, H, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Marzano, S, Massart, S, Mccauley, J, Melzer, M, Mielke-Ehret, N, Miller, K, Ming, T, Mirazimi, A, Mordecai, G, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Olmedo-Velarde, A, Palacios, G, Pallas, V, Palyi, B, Papa, A, Paraskevopoulou, S, Park, A, Parrish, C, Patterson, D, Pauvolid-Correa, A, Paweska, J, Payne, S, Peracchio, C, Perez, D, Postler, T, Qi, L, Radoshitzky, S, Resende, R, Reyes, C, Rima, B, Luna, G, Romanowski, V, Rota, P, Rubbenstroth, D, Rubino, L, Runstadler, J, Sabanadzovic, S, Sall, A, Salvato, M, Sang, R, Sasaya, T, Schulze, A, Schwemmle, M, Shi, M, Shi, X, Shi, Z, Shimomoto, Y, Shirako, Y, Siddell, S, Simmonds, P, Sironi, M, Smagghe, G, Smither, S, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Sugano, J, Suttle, C, Tabata, A, Takada, A, Takeuchi, S, Tchouassi, D, Teffer, A, Tesh, R, Thornburg, N, Tomitaka, Y, Tomonaga, K, Tordo, N, Torto, B, Towner, J, Tsuda, S, Tu, C, Turina, M, Tzanetakis, I, Uchida, J, Usugi, T, Vaira, A, Vallino, M, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, von Bargen, S, Wada, J, Wahl, V, Walker, P, Wang, L, Wang, G, Wang, Y, Waqas, M, Wei, T, Wen, S, Whitfield, A, Williams, J, Wolf, Y, Wu, J, Xu, L, Yanagisawa, H, Yang, C, Yang, Z, Zerbini, F, Zhai, L, Zhang, Y, Zhang, S, Zhang, J, Zhang, Z, Zhou, X, Kuhn JH, Adkins S, Agwanda BR, Al Kubrusli R, Alkhovsky SV, Amarasinghe GK, Avsic-Zupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron E, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buttner C, Calisher CH, Cao MJ, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki Y, Chiapello M, Choi I, Ciuffo M, Clegg JCS, Crozier I, Dal Bo E, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Durrwald R, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Franova J, Freitas-Astua J, Fu JJ, Furl S, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Gunther S, Hall RA, Hammond J, Han T, Hepojoki J, Hewson R, Hong J, Hong N, Hongo S, Horie M, Hu JS, Hu T, Hughes HR, Huttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiang DH, Jonson GB, Junglen S, Kadono F, Kaukinen KH, Kawate M, Klempa B, Klingstrom J, Kobinger G, Koloniuk I, Kondo H, Koonin EV, Krupovic M, Kubota K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li SR, Li LH, Li JR, Liu HZ, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallas V, Palyi B, Papa A, Paraskevopoulou S, Park AC, Parrish CR, Patterson DA, Pauvolid-Correa A, Paweska JT, Payne S, Peracchio C, Perez DR, Postler TS, Qi LY, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang RS, Sasaya T, Schulze AD, Schwemmle M, Shi M, Shi XH, Shi ZL, Shimomoto Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada A, Takeuchi S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka Y, Tomonaga K, Tordo N, Torto B, Towner JS, Tsuda S, Tu CC, Turina M, Tzanetakis IE, Uchida J, Usugi T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang LF, Wang GP, Wang YX, Wang YQ, Waqas M, Wei TY, Wen SH, Whitfield AE, Williams JV, Wolf YI, Wu JX, Xu L, Yanagisawa H, Yang CX, Yang ZK, Zerbini FM, Zhai L, Zhang YZ, Zhang S, Zhang JG, Zhang Z, and Zhou XP

Abstract

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.

Published
2021

14. Can there be a common, risk-based framework for decisions around live insect trade?

Author

Quinlan, M, Mumford, J, Benedict, M, Wäckers, F, Oliva, C, Wohlfarter, M, Smagghe, G, Vila, E, Klapwijk, J, Michaelakis, A, Collins, C, Prudhomme, J, Torres, G, Diaz, F, Saul-Gershenz, L, Cook, K, Verghese, A, Sreerama Kumar, P, Imperial College London, Biobest Groupe NV, Centre Technique Interprofessionnel des Fruits et Légumes (CTIFL), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM), World Organisation for Animal Health (WOAH), University of California [Davis] (UC Davis), and University of California (UC)

Subjects
Courier services, Risk analysis, 0707 Veterinary Sciences, Trade, JEL: F - International Economics/F.F1 - Trade/F.F1.F13 - Trade Policy • International Trade Organizations, Intergovernmental treaties and organisations, Veterinary Sciences, [SHS.ECO]Humanities and Social Sciences/Economics and Finance, Insect, [SDE.ES]Environmental Sciences/Environmental and Society
Abstract

A network of scientists involved in shipment of live insects has met and generated a series of articles on issues related to live insect transport. The network is diverse, covering large-scale commercial interests, government operated areawide control programmes, biomedical research and many smaller applications, in research, education and private uses. Many insect species have a record of safe transport, pose minimal risks and are shipped frequently between countries. The routine shipments of the most frequently used insect model organism for biomedical research, Drosophila melanogaster, is an example. Successful large-scale shipments from commercial biocontrol and pollinator suppliers also demonstrate precedents for low-risk shipment categories, delivered in large volumes to high quality standards. Decision makers need access to more information (publications or official papers) that details actual risks from the insects themselves or their possible contaminants, and should propose proportionate levels of management. There may be harm to source environments when insects are collected directly from the wild, and there may be harm https://doi.org/10.20506/rst.41.1.3319 Scientific and Technical Review 41 (1) 2022 220 to receiving environments. Several risk frameworks include insects and various international coordinating bodies, with experience of guidance on relevant risks, exist. All stakeholders would benefit from an integrated overview of guidance for insect shipping, with reference to types of risk and categories of magnitude, without trying for a single approach requiring universal agreement. Proposals for managing uncertainty and lack of data for smaller or infrequent shipments, for example, must not disrupt trade in large volumes of live insects, which are already supporting strategic objectives in several sectors.

Published
2022
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20. CropPol: A dynamic, open and global database on crop pollination

Author

Allen-Perkins, A, Magrach, A, Dainese, M, Garibaldi, LA, Kleijn, D, Rader, R, Reilly, JR, Winfree, R, Lundin, O, McGrady, CM, Brittain, C, Biddinger, DJ, Artz, DR, Elle, E, Hoffman, G, Ellis, JD, Daniels, J, Gibbs, J, Campbell, JW, Brokaw, J, Wilson, JK, Mason, K, Ward, KL, Gundersen, KB, Bobiwash, K, Gut, L, Rowe, LM, Boyle, NK, Williams, NM, Joshi, NK, Rothwell, N, Gillespie, RL, Isaacs, R, Fleischer, SJ, Peterson, SS, Rao, S, Pitts-Singer, TL, Fijen, T, Boreux, V, Rundlof, M, Viana, BF, Klein, A-M, Smith, HG, Bommarco, R, Carvalheiro, LG, Ricketts, TH, Ghazoul, J, Krishnan, S, Benjamin, FE, Loureiro, J, Castro, S, Raine, NE, de Groot, GA, Horgan, FG, Hipolito, J, Smagghe, G, Meeus, I, Eeraerts, M, Potts, SG, Kremen, C, Garcia, D, Minarro, M, Crowder, DW, Pisanty, G, Mandelik, Y, Vereecken, NJ, Leclercq, N, Weekers, T, Lindstrom, SAM, Stanley, DA, Zaragoza-Trello, C, Nicholson, CC, Scheper, J, Rad, C, Marks, EAN, Mota, L, Danforth, B, Park, M, Bezerra, ADM, Freitas, BM, Mallinger, RE, Oliveira da Silva, F, Willcox, B, Ramos, DL, da Silva e Silva, FD, Lazaro, A, Alomar, D, Gonzalez-Estevez, MA, Taki, H, Cariveau, DP, Garratt, MPD, Nabaes Jodar, DN, Stewart, RIA, Ariza, D, Pisman, M, Lichtenberg, EM, Schueepp, C, Herzog, F, Entling, MH, Dupont, YL, Michener, CD, Daily, GC, Ehrlich, PR, Burns, KLW, Vila, M, Robson, A, Howlett, B, Blechschmidt, L, Jauker, F, Schwarzbach, F, Nesper, M, Diekoetter, T, Wolters, V, Castro, H, Gaspar, H, Nault, BA, Badenhausser, I, Petersen, JD, Tscharntke, T, Bretagnolle, V, Willis Chan, DS, Chacoff, N, Andersson, GKS, Jha, S, Colville, JF, Veldtman, R, Coutinho, J, Bianchi, FJJA, Sutter, L, Albrecht, M, Jeanneret, P, Zou, Y, Averill, AL, Saez, A, Sciligo, AR, Vergara, CH, Bloom, EH, Oeller, E, Badano, EI, Loeb, GM, Grab, H, Ekroos, J, Gagic, V, Cunningham, SA, Astrom, J, Cavigliasso, P, Trillo, A, Classen, A, Mauchline, AL, Montero-Castano, A, Wilby, A, Woodcock, BA, Sidhu, CS, Steffan-Dewenter, I, Vogiatzakis, IN, Herrera, JM, Otieno, M, Gikungu, MW, Cusser, SJ, Nauss, T, Nilsson, L, Knapp, J, Ortega-Marcos, JJ, Gonzalez, JA, Osborne, JL, Blanche, R, Shaw, RF, Hevia, V, Stout, J, Arthur, AD, Blochtein, B, Szentgyorgyi, H, Li, J, Mayfield, MM, Woyciechowski, M, Nunes-Silva, P, Halinski de Oliveira, R, Henry, S, Simmons, BI, Dalsgaard, B, Hansen, K, Sritongchuay, T, O'Reilly, AD, Chamorro Garcia, FJ, Nates Parra, G, Magalhaes Pigozo, C, Bartomeus, I, Allen-Perkins, A, Magrach, A, Dainese, M, Garibaldi, LA, Kleijn, D, Rader, R, Reilly, JR, Winfree, R, Lundin, O, McGrady, CM, Brittain, C, Biddinger, DJ, Artz, DR, Elle, E, Hoffman, G, Ellis, JD, Daniels, J, Gibbs, J, Campbell, JW, Brokaw, J, Wilson, JK, Mason, K, Ward, KL, Gundersen, KB, Bobiwash, K, Gut, L, Rowe, LM, Boyle, NK, Williams, NM, Joshi, NK, Rothwell, N, Gillespie, RL, Isaacs, R, Fleischer, SJ, Peterson, SS, Rao, S, Pitts-Singer, TL, Fijen, T, Boreux, V, Rundlof, M, Viana, BF, Klein, A-M, Smith, HG, Bommarco, R, Carvalheiro, LG, Ricketts, TH, Ghazoul, J, Krishnan, S, Benjamin, FE, Loureiro, J, Castro, S, Raine, NE, de Groot, GA, Horgan, FG, Hipolito, J, Smagghe, G, Meeus, I, Eeraerts, M, Potts, SG, Kremen, C, Garcia, D, Minarro, M, Crowder, DW, Pisanty, G, Mandelik, Y, Vereecken, NJ, Leclercq, N, Weekers, T, Lindstrom, SAM, Stanley, DA, Zaragoza-Trello, C, Nicholson, CC, Scheper, J, Rad, C, Marks, EAN, Mota, L, Danforth, B, Park, M, Bezerra, ADM, Freitas, BM, Mallinger, RE, Oliveira da Silva, F, Willcox, B, Ramos, DL, da Silva e Silva, FD, Lazaro, A, Alomar, D, Gonzalez-Estevez, MA, Taki, H, Cariveau, DP, Garratt, MPD, Nabaes Jodar, DN, Stewart, RIA, Ariza, D, Pisman, M, Lichtenberg, EM, Schueepp, C, Herzog, F, Entling, MH, Dupont, YL, Michener, CD, Daily, GC, Ehrlich, PR, Burns, KLW, Vila, M, Robson, A, Howlett, B, Blechschmidt, L, Jauker, F, Schwarzbach, F, Nesper, M, Diekoetter, T, Wolters, V, Castro, H, Gaspar, H, Nault, BA, Badenhausser, I, Petersen, JD, Tscharntke, T, Bretagnolle, V, Willis Chan, DS, Chacoff, N, Andersson, GKS, Jha, S, Colville, JF, Veldtman, R, Coutinho, J, Bianchi, FJJA, Sutter, L, Albrecht, M, Jeanneret, P, Zou, Y, Averill, AL, Saez, A, Sciligo, AR, Vergara, CH, Bloom, EH, Oeller, E, Badano, EI, Loeb, GM, Grab, H, Ekroos, J, Gagic, V, Cunningham, SA, Astrom, J, Cavigliasso, P, Trillo, A, Classen, A, Mauchline, AL, Montero-Castano, A, Wilby, A, Woodcock, BA, Sidhu, CS, Steffan-Dewenter, I, Vogiatzakis, IN, Herrera, JM, Otieno, M, Gikungu, MW, Cusser, SJ, Nauss, T, Nilsson, L, Knapp, J, Ortega-Marcos, JJ, Gonzalez, JA, Osborne, JL, Blanche, R, Shaw, RF, Hevia, V, Stout, J, Arthur, AD, Blochtein, B, Szentgyorgyi, H, Li, J, Mayfield, MM, Woyciechowski, M, Nunes-Silva, P, Halinski de Oliveira, R, Henry, S, Simmons, BI, Dalsgaard, B, Hansen, K, Sritongchuay, T, O'Reilly, AD, Chamorro Garcia, FJ, Nates Parra, G, Magalhaes Pigozo, C, and Bartomeus, I

Abstract

Seventy five percent of the world's food crops benefit from insect pollination. Hence, there has been increased interest in how global change drivers impact this critical ecosystem service. Because standardized data on crop pollination are rarely available, we are limited in our capacity to understand the variation in pollination benefits to crop yield, as well as to anticipate changes in this service, develop predictions, and inform management actions. Here, we present CropPol, a dynamic, open, and global database on crop pollination. It contains measurements recorded from 202 crop studies, covering 3,394 field observations, 2,552 yield measurements (i.e., berry mass, number of fruits, and fruit density [kg/ha], among others), and 47,752 insect records from 48 commercial crops distributed around the globe. CropPol comprises 32 of the 87 leading global crops and commodities that are pollinator dependent. Malus domestica is the most represented crop (32 studies), followed by Brassica napus (22 studies), Vaccinium corymbosum (13 studies), and Citrullus lanatus (12 studies). The most abundant pollinator guilds recorded are honey bees (34.22% counts), bumblebees (19.19%), flies other than Syrphidae and Bombyliidae (13.18%), other wild bees (13.13%), beetles (10.97%), Syrphidae (4.87%), and Bombyliidae (0.05%). Locations comprise 34 countries distributed among Europe (76 studies), North America (60), Latin America and the Caribbean (29), Asia (20), Oceania (10), and Africa (7). Sampling spans three decades and is concentrated on 2001-2005 (21 studies), 2006-2010 (40), 2011-2015 (88), and 2016-2020 (50). This is the most comprehensive open global data set on measurements of crop flower visitors, crop pollinators and pollination to date, and we encourage researchers to add more datasets to this database in the future. This data set is released for non-commercial use only. Credits should be given to this paper (i.e., proper citation), and the products generated with this da

Published
2022

21. Honey bees and climate explain viral prevalence in wild bee communities on a continental scale

Author

Piot, N., Schweiger, Oliver, Meeus, I., Yañez, O., Straub, L., Villamar-Bouza, L., De la Rúa, P., Jara, L., Ruiz, C., Malmstrøm, M., Mustafa, S., Nielsen, A., Mänd, M., Karise, R., Tlak-Gajger, I., Özgör, E., Keskin, N., Diévart, V., Dalmon, A., Gajda, A., Neumann, P., Smagghe, G., Graystock, P., Radzevičiūtė, R., Paxton, R.J., de Miranda, J.R., Piot, N., Schweiger, Oliver, Meeus, I., Yañez, O., Straub, L., Villamar-Bouza, L., De la Rúa, P., Jara, L., Ruiz, C., Malmstrøm, M., Mustafa, S., Nielsen, A., Mänd, M., Karise, R., Tlak-Gajger, I., Özgör, E., Keskin, N., Diévart, V., Dalmon, A., Gajda, A., Neumann, P., Smagghe, G., Graystock, P., Radzevičiūtė, R., Paxton, R.J., and de Miranda, J.R.

Abstract

Viruses are omnipresent, yet the knowledge on drivers of viral prevalence in wild host populations is often limited. Biotic factors, such as sympatric managed host species, as well as abiotic factors, such as climatic variables, are likely to impact viral prevalence. Managed and wild bees, which harbor several multi-host viruses with a mostly fecal–oral between-species transmission route, provide an excellent system with which to test for the impact of biotic and abiotic factors on viral prevalence in wild host populations. Here we show on a continental scale that the prevalence of three broad host viruses: the AKI-complex (Acute bee paralysis virus, Kashmir bee virus and Israeli acute paralysis virus), Deformed wing virus, and Slow bee paralysis virus in wild bee populations (bumble bees and solitary bees) is positively related to viral prevalence of sympatric honey bees as well as being impacted by climatic variables. The former highlights the need for good beekeeping practices, including Varroa destructor management to reduce honey bee viral infection and hive placement. Furthermore, we found that viral prevalence in wild bees is at its lowest at the extreme ends of both temperature and precipitation ranges. Under predicted climate change, the frequency of extremes in precipitation and temperature will continue to increase and may hence impact viral prevalence in wild bee communities.

Published
2022

22. Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970’s Egypt

Author

de Miranda, JR, Brettell, LE, Chejanovsky, N, Childers, AK, Dalmon, A, Deboutte, W, de Graaf, DC, Doublet, V, Gebremedhn, H, Genersch, E, Gisder, S, Granberg, F, Haddad, NJ, Kaden, R, Manley, R, Matthijnssens, J, Meeus, I, Migdadi, H, Milbrath, MO, Mondet, F, Remnant, EJ, Roberts, JMK, Ryabov, EV, Sela, N, Smagghe, G, Somanathan, H, Wilfert, L, Wright, ON, Martin, SJ, and Ball, BV

Subjects
600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft::630 Landwirtschaft und verwandte Bereiche, Varroidae, Honeybee, Short Report, Western blot, Infectious and parasitic diseases, RC109-216, Deformed wing virus, RECOMBINANTS, Zoologi, SEQUENCE, qx_565, Virology, Genetics, Animals, RNA Viruses, Genetik, PARASITE, Bioinformatic, Science & Technology, qx_4, screening, DNA Viruses, Biology and Life Sciences, RNA sequencing, Bees, READ ALIGNMENT, PICORNA-LIKE VIRUS, Infectious Diseases, qx_20, VARROA-DESTRUCTOR, APIS-MELLIFERA, Varroa destructor, Master strain, Bioinformatic screening, RNA, Egypt, Apis mellifera, Zoology, Life Sciences & Biomedicine, Egypt bee virus
Abstract

In 1977, a sample of diseased adult honeybees (Apis mellifera) from Egypt was found to contain large amounts of a previously unknown virus, Egypt bee virus, which was subsequently shown to be serologically related to deformed wing virus (DWV). By sequencing the original isolate, we demonstrate that Egypt bee virus is in fact a fourth unique, major variant of DWV (DWV-D): more closely related to DWV-C than to either DWV-A or DWV-B. DWV-A and DWV-B are the most common DWV variants worldwide due to their close relationship and transmission by Varroa destructor. However, we could not find any trace of DWV-D in several hundred RNA sequencing libraries from a worldwide selection of honeybee, varroa and bumblebee samples. This means that DWV-D has either become extinct, been replaced by other DWV variants better adapted to varroa-mediated transmission, or persists only in a narrow geographic or host range, isolated from common bee and beekeeping trade routes. Supplementary Information The online version contains supplementary material available at 10.1186/s12985-022-01740-2.

Published
2022
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27. Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn J.H., Adkins S., Agwanda B.R., Al Kubrusli R., Alkhovsky S.V., Amarasinghe G.K., Avsic-Zupanc T., Ayllon M.A., Bahl J., Balkema-Buschmann A., Ballinger M.J., Basler C.F., Bavari S., Beer M., Bejerman N., Bennett A.J., Bente D.A., Bergeron E., Bird B.H., Blair C.D., Blasdell K.R., Blystad D.-R., Bojko J., Borth W.B., Bradfute S., Breyta R., Briese T., Brown P.A., Brown J.K., Buchholz U.J., Buchmeier M.J., Bukreyev A., Burt F., Buttner C., Calisher C.H., Cao M., Casas I., Chandran K., Charrel R.N., Cheng Q., Chiaki Y., Chiapello M., Choi I.-R., Ciuffo M., Clegg J.C.S., Crozier I., Dal Bo E., de la Torre J.C., de Lamballerie X., de Swart R.L., Debat H., Dheilly N.M., Di Cicco E., Di Paola N., Di Serio F., Dietzgen R.G., Digiaro M., Dolnik O., Drebot M.A., Drexler J.F., Dundon W.G., Duprex W.P., Durrwald R., Dye J.M., Easton A.J., Ebihara H., Elbeaino T., Ergunay K., Ferguson H.W., Fooks A.R., Forgia M., Formenty P.B.H., Franova J., Freitas-Astua J., Fu J., Furl S., Gago-Zachert S., Gao G.F., Garcia M.L., Garcia-Sastre A., Garrison A.R., Gaskin T., Gonzalez J.-P.J., Griffiths A., Goldberg T.L., Groschup M.H., Gunther S., Hall R.A., Hammond J., Han T., Hepojoki J., Hewson R., Hong J., Hong N., Hongo S., Horie M., Hu J.S., Hu T., Hughes H.R., Huttner F., Hyndman T.H., Ilyas M., Jalkanen R., Jiang D., Jonson G.B., Junglen S., Kadono F., Kaukinen K.H., Kawate M., Klempa B., Klingstrom J., Kobinger G., Koloniuk I., Kondo H., Koonin E.V., Krupovic M., Kubota K., Kurath G., Laenen L., Lambert A.J., Langevin S.L., Lee B., Lefkowitz E.J., Leroy E.M., Li S., Li L., Li J., Liu H., Lukashevich I.S., Maes P., de Souza W.M., Marklewitz M., Marshall S.H., Marzano S.-Y.L., Massart S., McCauley J.W., Melzer M., Mielke-Ehret N., Miller K.M., Ming T.J., Mirazimi A., Mordecai G.J., Muhlbach H.-P., Muhlberger E., Naidu R., Natsuaki T., Navarro J.A., Netesov S.V., Neumann G., Nowotny N., Nunes M.R.T., Olmedo-Velarde A., Palacios G., Pallas V., Palyi B., Papa A., Paraskevopoulou S., Park A.C., Parrish C.R., Patterson D.A., Pauvolid-Correa A., Paweska J.T., Payne S., Peracchio C., Perez D.R., Postler T.S., Qi L., Radoshitzky S.R., Resende R.O., Reyes C.A., Rima B.K., Luna G.R., Romanowski V., Rota P., Rubbenstroth D., Rubino L., Runstadler J.A., Sabanadzovic S., Sall A.A., Salvato M.S., Sang R., Sasaya T., Schulze A.D., Schwemmle M., Shi M., Shi X., Shi Z., Shimomoto Y., Shirako Y., Siddell S.G., Simmonds P., Sironi M., Smagghe G., Smither S., Song J.-W., Spann K., Spengler J.R., Stenglein M.D., Stone D.M., Sugano J., Suttle C.A., Tabata A., Takada A., Takeuchi S., Tchouassi D.P., Teffer A., Tesh R.B., Thornburg N.J., Tomitaka Y., Tomonaga K., Tordo N., Torto B., Towner J.S., Tsuda S., Tu C., Turina M., Tzanetakis I.E., Uchida J., Usugi T., Vaira A.M., Vallino M., van den Hoogen B., Varsani A., Vasilakis N., Verbeek M., von Bargen S., Wada J., Wahl V., Walker P.J., Wang L.-F., Wang G., Wang Y., Waqas M., Wei T., Wen S., Whitfield A.E., Williams J.V., Wolf Y.I., Wu J., Xu L., Yanagisawa H., Yang C., Yang Z., Zerbini F.M., Zhai L., Zhang Y.-Z., Zhang S., Zhang J., Zhang Z., and Zhou X.

Subjects
Virus classification, Negative-stranded RNA viruses
Abstract

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratifcation vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/ or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV

Published
2021
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29. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, J.H., Adkins, S., Agwanda, B.R., Al Kubrusli, R., Alkhovsky, S.V., Amarasinghe, G.K., Avšič-Županc, T., Ayllón, M.A., Bahl, J., Balkema-Buschmann, A., Ballinger, M.J., Basler, C.F., Bavari, S., Beer, M., Bejerman, N., Bennett, A.J., Bente, D.A., Bergeron, É., Bird, B.H., Blair, C.D., Blasdell, K.R., Blystad, D-R, Bojko, J., Borth, W.B., Bradfute, S., Breyta, R., Briese, T., Brown, P.A., Brown, J.K., Buchholz, U.J., Buchmeier, M.J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C.H., Cao, M., Casas, I., Chandran, K., Charrel, R.N., Cheng, Q., Chiaki, Y., Chiapello, M., Choi, I-R, Ciuffo, M., Clegg, J.C.S., Crozier, I., Dal Bó, E., de la Torre, J.C., de Lamballerie, X., de Swart, R.L., Debat, H., Dheilly, N.M., Di Cicco, E., Di Paola, N., Di Serio, F., Dietzgen, R.G., Digiaro, M., Dolnik, O., Drebot, M.A., Drexler, J.F., Dundon, W.G., Duprex, W.P., Dürrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Elbeaino, T., Ergünay, K., Ferguson, H.W., Fooks, A.R., Forgia, M., Formenty, P.B.H., Fránová, J., Freitas-Astúa, J., Fu, J., Fürl, S., Gago-Zachert, S., Gāo, G.F., García, M.L., García-Sastre, A., Garrison, A.R., Gaskin, T., Gonzalez, J-P.J., Griffiths, A., Goldberg, T.L., Groschup, M.H., Günther, S., Hall, R.A., Hammond, J., Han, T., Hepojoki, J., Hewson, R., Hong, J., Hong, N., Hongo, S., Horie, M., Hu, J.S., Hu, T., Hughes, H.R., Hüttner, F., Hyndman, T.H., Ilyas, M., Jalkanen, R., Jiāng, D., Jonson, G.B., Junglen, S., Kadono, F., Kaukinen, K.H., Kawate, M., Klempa, B., Klingström, J., Kobinger, G., Koloniuk, I., Kondo, H., Koonin, E.V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A.J., Langevin, S.L., Lee, B., Lefkowitz, E.J., Leroy, E.M., Li, S., Li, L., Lǐ, J., Liu, H., Lukashevich, I.S., Maes, P., de Souza, W.M., Marklewitz, M., Marshall, S.H., Marzano, S-Y.L., Massart, S., McCauley, J.W., Melzer, M., Mielke-Ehret, N., Miller, K.M., Ming, T.J., Mirazimi, A., Mordecai, G.J., Mühlbach, H-P, Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J.A., Netesov, S.V., Neumann, G., Nowotny, N., Nunes, M.R.T., Olmedo-Velarde, A., Palacios, G., Pallas, V., Pályi, B., Papa, A., Paraskevopoulou, S., Park, A.C., Parrish, C.R., Patterson, D.A., Pauvolid-Corrêa, A., Pawęska, J.T., Payne, S., Peracchio, C., Pérez, D.R., Postler, T.S., Qi, L., Radoshitzky, S.R., Resende, R.O., Reyes, C.A., Rima, B.K., Luna, G.R., Romanowski, V., Rota, P., Rubbenstroth, D., Rubino, L., Runstadler, J.A., Sabanadzovic, S., Sall, A.A., Salvato, M.S., Sang, R., Sasaya, T., Schulze, A.D., Schwemmle, M., Shi, M., Shi, X., Shí, Z., Shimomoto, Y., Shirako, Y., Siddell, S.G., Simmonds, P., Sironi, M., Smagghe, G., Smither, S., Song, J-W, Spann, K., Spengler, J.R., Stenglein, M.D., Stone, D.M., Sugano, J., Suttle, C.A., Tabata, A., Takada, A., Takeuchi, S., Tchouassi, D.P., Teffer, A., Tesh, R.B., Thornburg, N.J., Tomitaka, Y., Tomonaga, K., Tordo, N., Torto, B., Towner, J.S., Tsuda, S., Tu, C., Turina, M., Tzanetakis, I.E., Uchida, J., Usugi, T., Vaira, A.M., Vallino, M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P.J., Wang, L-F, Wang, G., Wang, Y., Waqas, M., Wèi, T., Wen, S., Whitfield, A.E., Williams, J.V., Wolf, Y.I., Wu, J., Xu, L., Yanagisawa, H., Yang, C., Yang, Z., Zerbini, F.M., Zhai, L., Zhang, Y-Z, Zhang, S., Zhang, J., Zhang, Z., Zhou, X., Kuhn, J.H., Adkins, S., Agwanda, B.R., Al Kubrusli, R., Alkhovsky, S.V., Amarasinghe, G.K., Avšič-Županc, T., Ayllón, M.A., Bahl, J., Balkema-Buschmann, A., Ballinger, M.J., Basler, C.F., Bavari, S., Beer, M., Bejerman, N., Bennett, A.J., Bente, D.A., Bergeron, É., Bird, B.H., Blair, C.D., Blasdell, K.R., Blystad, D-R, Bojko, J., Borth, W.B., Bradfute, S., Breyta, R., Briese, T., Brown, P.A., Brown, J.K., Buchholz, U.J., Buchmeier, M.J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C.H., Cao, M., Casas, I., Chandran, K., Charrel, R.N., Cheng, Q., Chiaki, Y., Chiapello, M., Choi, I-R, Ciuffo, M., Clegg, J.C.S., Crozier, I., Dal Bó, E., de la Torre, J.C., de Lamballerie, X., de Swart, R.L., Debat, H., Dheilly, N.M., Di Cicco, E., Di Paola, N., Di Serio, F., Dietzgen, R.G., Digiaro, M., Dolnik, O., Drebot, M.A., Drexler, J.F., Dundon, W.G., Duprex, W.P., Dürrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Elbeaino, T., Ergünay, K., Ferguson, H.W., Fooks, A.R., Forgia, M., Formenty, P.B.H., Fránová, J., Freitas-Astúa, J., Fu, J., Fürl, S., Gago-Zachert, S., Gāo, G.F., García, M.L., García-Sastre, A., Garrison, A.R., Gaskin, T., Gonzalez, J-P.J., Griffiths, A., Goldberg, T.L., Groschup, M.H., Günther, S., Hall, R.A., Hammond, J., Han, T., Hepojoki, J., Hewson, R., Hong, J., Hong, N., Hongo, S., Horie, M., Hu, J.S., Hu, T., Hughes, H.R., Hüttner, F., Hyndman, T.H., Ilyas, M., Jalkanen, R., Jiāng, D., Jonson, G.B., Junglen, S., Kadono, F., Kaukinen, K.H., Kawate, M., Klempa, B., Klingström, J., Kobinger, G., Koloniuk, I., Kondo, H., Koonin, E.V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A.J., Langevin, S.L., Lee, B., Lefkowitz, E.J., Leroy, E.M., Li, S., Li, L., Lǐ, J., Liu, H., Lukashevich, I.S., Maes, P., de Souza, W.M., Marklewitz, M., Marshall, S.H., Marzano, S-Y.L., Massart, S., McCauley, J.W., Melzer, M., Mielke-Ehret, N., Miller, K.M., Ming, T.J., Mirazimi, A., Mordecai, G.J., Mühlbach, H-P, Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J.A., Netesov, S.V., Neumann, G., Nowotny, N., Nunes, M.R.T., Olmedo-Velarde, A., Palacios, G., Pallas, V., Pályi, B., Papa, A., Paraskevopoulou, S., Park, A.C., Parrish, C.R., Patterson, D.A., Pauvolid-Corrêa, A., Pawęska, J.T., Payne, S., Peracchio, C., Pérez, D.R., Postler, T.S., Qi, L., Radoshitzky, S.R., Resende, R.O., Reyes, C.A., Rima, B.K., Luna, G.R., Romanowski, V., Rota, P., Rubbenstroth, D., Rubino, L., Runstadler, J.A., Sabanadzovic, S., Sall, A.A., Salvato, M.S., Sang, R., Sasaya, T., Schulze, A.D., Schwemmle, M., Shi, M., Shi, X., Shí, Z., Shimomoto, Y., Shirako, Y., Siddell, S.G., Simmonds, P., Sironi, M., Smagghe, G., Smither, S., Song, J-W, Spann, K., Spengler, J.R., Stenglein, M.D., Stone, D.M., Sugano, J., Suttle, C.A., Tabata, A., Takada, A., Takeuchi, S., Tchouassi, D.P., Teffer, A., Tesh, R.B., Thornburg, N.J., Tomitaka, Y., Tomonaga, K., Tordo, N., Torto, B., Towner, J.S., Tsuda, S., Tu, C., Turina, M., Tzanetakis, I.E., Uchida, J., Usugi, T., Vaira, A.M., Vallino, M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P.J., Wang, L-F, Wang, G., Wang, Y., Waqas, M., Wèi, T., Wen, S., Whitfield, A.E., Williams, J.V., Wolf, Y.I., Wu, J., Xu, L., Yanagisawa, H., Yang, C., Yang, Z., Zerbini, F.M., Zhai, L., Zhang, Y-Z, Zhang, S., Zhang, J., Zhang, Z., and Zhou, X.

Abstract

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.

Published
2021

30. Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, J.H., Adkins, S., Agwanda, B.R., Al Kubrusli, R., Alkhovsky, S.V., Amarasinghe, G.K., Avšič-Županc, T., Ayllón, M.A., Bahl, J., Balkema-Buschmann, A., Ballinger, M.J., Basler, C.F., Bavari, S., Beer, M., Bejerman, N., Bennett, A.J., Bente, D.A., Bergeron, É., Bird, B.H., Blair, C.D., Blasdell, K.R., Blystad, D-R, Bojko, J., Borth, W.B., Bradfute, S., Breyta, R., Briese, T., Brown, P.A., Brown, J.K., Buchholz, U.J., Buchmeier, M.J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C.H., Cao, M., Casas, I., Chandran, K., Charrel, R.N., Cheng, Q., Chiaki, Y., Chiapello, M., Choi, I-R, Ciuffo, M., Clegg, J.C.S., Crozier, I., Dal Bó, E., de la Torre, J.C., de Lamballerie, X., de Swart, R.L., Debat, H., Dheilly, N.M., Di Cicco, E., Di Paola, N., Di Serio, F., Dietzgen, R.G., Digiaro, M., Dolnik, O., Drebot, M.A., Drexler, J.F., Dundon, W.G., Duprex, W.P., Dürrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Elbeaino, T., Ergünay, K., Ferguson, H.W., Fooks, A.R., Forgia, M., Formenty, P.B.H., Fránová, J., Freitas-Astúa, J., Fu, J., Fürl, S., Gago-Zachert, S., Gāo, G.F., García, M.L., García-Sastre, A., Garrison, A.R., Gaskin, T., Gonzalez, J-P.J., Griffiths, A., Goldberg, T.L., Groschup, M.H., Günther, S., Hall, R.A., Hammond, J., Han, T., Hepojoki, J., Hewson, R., Hong, J., Hong, N., Hongo, S., Horie, M., Hu, J.S., Hu, T., Hughes, H.R., Hüttner, F., Hyndman, T.H., Ilyas, M., Jalkanen, R., Jiāng, D., Jonson, G.B., Junglen, S., Kadono, F., Kaukinen, K.H., Kawate, M., Klempa, B., Klingström, J., Kobinger, G., Koloniuk, I., Kondo, H., Koonin, E.V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A.J., Langevin, S.L., Lee, B., Lefkowitz, E.J., Leroy, E.M., Li, S., Li, L., Lǐ, J., Liu, H., Lukashevich, I.S., Maes, P., de Souza, W.M., Marklewitz, M., Marshall, S.H., Marzano, S-Y.L., Massart, S., McCauley, J.W., Melzer, M., Mielke-Ehret, N., Miller, K.M., Ming, T.J., Mirazimi, A., Mordecai, G.J., Mühlbach, H-P, Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J.A., Netesov, S.V., Neumann, G., Nowotny, N., Nunes, M.R.T., Olmedo-Velarde, A., Palacios, G., Pallás, V., Pályi, B., Papa, A., Paraskevopoulou, S., Park, A.C., Parrish, C.R., Patterson, D.A., Pauvolid-Corrêa, A., Pawęska, J.T., Payne, S., Peracchio, C., Pérez, D.R., Postler, T.S., Qi, L., Radoshitzky, S.R., Resende, R.O., Reyes, C.A., Rima, B.K., Luna, G.R., Romanowski, V., Rota, P., Rubbenstroth, D., Rubino, L., Runstadler, J.A., Sabanadzovic, S., Sall, A.A., Salvato, M.S., Sang, R., Sasaya, T., Schulze, A.D., Schwemmle, M., Shi, M., Shí, X., Shí, Z., Shimomoto, Y., Shirako, Y., Siddell, S.G., Simmonds, P., Sironi, M., Smagghe, G., Smither, S., Song, J-W, Spann, K., Spengler, J.R., Stenglein, M.D., Stone, D.M., Sugano, J., Suttle, C.A., Tabata, A., Takada, A., Takeuchi, S., Tchouassi, D.P., Teffer, A., Tesh, R.B., Thornburg, N. J., Tomitaka, Y., Tomonaga, K., Tordo, N., Torto, B., Towner, J.S., Tsuda, S., Tu, C., Turina, M., Tzanetakis, I.E., Uchida, J., Usugi, T., Vaira, A.M., Vallino, M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P.J., Wang, L-F, Wang, G., Wang, Y., Waqas, M., Wèi, T., Wen, S., Whitfield, A.E., Williams, J.V., Wolf, Y.I., Wu, J., Xu, L., Yanagisawa, H., Yang, C., Yang, Z., Zerbini, F.M., Zhai, L., Zhang, Y-Z, Zhang, S., Zhang, J., Zhang, Z., Zhou, X., Kuhn, J.H., Adkins, S., Agwanda, B.R., Al Kubrusli, R., Alkhovsky, S.V., Amarasinghe, G.K., Avšič-Županc, T., Ayllón, M.A., Bahl, J., Balkema-Buschmann, A., Ballinger, M.J., Basler, C.F., Bavari, S., Beer, M., Bejerman, N., Bennett, A.J., Bente, D.A., Bergeron, É., Bird, B.H., Blair, C.D., Blasdell, K.R., Blystad, D-R, Bojko, J., Borth, W.B., Bradfute, S., Breyta, R., Briese, T., Brown, P.A., Brown, J.K., Buchholz, U.J., Buchmeier, M.J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C.H., Cao, M., Casas, I., Chandran, K., Charrel, R.N., Cheng, Q., Chiaki, Y., Chiapello, M., Choi, I-R, Ciuffo, M., Clegg, J.C.S., Crozier, I., Dal Bó, E., de la Torre, J.C., de Lamballerie, X., de Swart, R.L., Debat, H., Dheilly, N.M., Di Cicco, E., Di Paola, N., Di Serio, F., Dietzgen, R.G., Digiaro, M., Dolnik, O., Drebot, M.A., Drexler, J.F., Dundon, W.G., Duprex, W.P., Dürrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Elbeaino, T., Ergünay, K., Ferguson, H.W., Fooks, A.R., Forgia, M., Formenty, P.B.H., Fránová, J., Freitas-Astúa, J., Fu, J., Fürl, S., Gago-Zachert, S., Gāo, G.F., García, M.L., García-Sastre, A., Garrison, A.R., Gaskin, T., Gonzalez, J-P.J., Griffiths, A., Goldberg, T.L., Groschup, M.H., Günther, S., Hall, R.A., Hammond, J., Han, T., Hepojoki, J., Hewson, R., Hong, J., Hong, N., Hongo, S., Horie, M., Hu, J.S., Hu, T., Hughes, H.R., Hüttner, F., Hyndman, T.H., Ilyas, M., Jalkanen, R., Jiāng, D., Jonson, G.B., Junglen, S., Kadono, F., Kaukinen, K.H., Kawate, M., Klempa, B., Klingström, J., Kobinger, G., Koloniuk, I., Kondo, H., Koonin, E.V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A.J., Langevin, S.L., Lee, B., Lefkowitz, E.J., Leroy, E.M., Li, S., Li, L., Lǐ, J., Liu, H., Lukashevich, I.S., Maes, P., de Souza, W.M., Marklewitz, M., Marshall, S.H., Marzano, S-Y.L., Massart, S., McCauley, J.W., Melzer, M., Mielke-Ehret, N., Miller, K.M., Ming, T.J., Mirazimi, A., Mordecai, G.J., Mühlbach, H-P, Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J.A., Netesov, S.V., Neumann, G., Nowotny, N., Nunes, M.R.T., Olmedo-Velarde, A., Palacios, G., Pallás, V., Pályi, B., Papa, A., Paraskevopoulou, S., Park, A.C., Parrish, C.R., Patterson, D.A., Pauvolid-Corrêa, A., Pawęska, J.T., Payne, S., Peracchio, C., Pérez, D.R., Postler, T.S., Qi, L., Radoshitzky, S.R., Resende, R.O., Reyes, C.A., Rima, B.K., Luna, G.R., Romanowski, V., Rota, P., Rubbenstroth, D., Rubino, L., Runstadler, J.A., Sabanadzovic, S., Sall, A.A., Salvato, M.S., Sang, R., Sasaya, T., Schulze, A.D., Schwemmle, M., Shi, M., Shí, X., Shí, Z., Shimomoto, Y., Shirako, Y., Siddell, S.G., Simmonds, P., Sironi, M., Smagghe, G., Smither, S., Song, J-W, Spann, K., Spengler, J.R., Stenglein, M.D., Stone, D.M., Sugano, J., Suttle, C.A., Tabata, A., Takada, A., Takeuchi, S., Tchouassi, D.P., Teffer, A., Tesh, R.B., Thornburg, N. J., Tomitaka, Y., Tomonaga, K., Tordo, N., Torto, B., Towner, J.S., Tsuda, S., Tu, C., Turina, M., Tzanetakis, I.E., Uchida, J., Usugi, T., Vaira, A.M., Vallino, M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P.J., Wang, L-F, Wang, G., Wang, Y., Waqas, M., Wèi, T., Wen, S., Whitfield, A.E., Williams, J.V., Wolf, Y.I., Wu, J., Xu, L., Yanagisawa, H., Yang, C., Yang, Z., Zerbini, F.M., Zhai, L., Zhang, Y-Z, Zhang, S., Zhang, J., Zhang, Z., and Zhou, X.

Abstract

Unfortunately, the inclusion of original names (in non-Latin script) of the following authors caused problems with author name indexing in PubMed. Therefore, these original names were removed from XML data to correct the PubMed record...

Published
2021

34. Contributor contact details

Author

Kulozik, U., primary, Schuck, Pierre, additional, Vercruysse, L., additional, Van Camp, J., additional, Dewettinck, K., additional, Smagghe, G., additional, Sichien, M., additional, Thienpont, N., additional, Fredrick, E., additional, Trung Le, T., additional, Durham, R.J., additional, Qi, P.X., additional, Recio, I., additional, Moreno, F.J., additional, López-Fandiño, R., additional, Akhavan, T., additional, Panahi, S., additional, Anderson, G.H., additional, Luhovyy, B.L., additional, Kekkonen, Riina, additional, Peuhkuri, Katri, additional, Korhonen, H.J., additional, Marnila, P., additional, Hickey, R., additional, Mezouari, S., additional, Pouliot, Y., additional, Britten, M., additional, Corredig, M., additional, Huppertz, T., additional, Kelly, A.L., additional, Kothari, K.I., additional, Voigt, D.D., additional, Drake, M.A., additional, Wright, J., additional, Whitson, M., additional, v, M., additional, Sibeijn, M., additional, Wouters, J.A., additional, O’Kennedy, B.T., additional, Guinee, T.P., additional, Wilde, P.J., additional, Oliver, C.M., additional, Augustin, M.-A., additional, Tomasula, P.M., additional, Paterson, A.H.J., additional, Kellam, S.J., additional, and Singh, Harjinder, additional

Published
2009
Full Text
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38. Insecticidal Gene Silencing by RNAi in the Neotropical Region

Author

DIAS, N. P., CAGLIARI, D., SANTOS, E. A. DOS, SMAGGHE, G., JURAT-FUENTES, J. L., NAVA, D. E., ZOTTI, M. J., N. P. DIAS, UFPEL, D. CAGLIARI, UFPEL, E. A. DOS SANTOS, UFPEL, G. SMAGGHE, GHENT UNIVERSITY, J. L. JURAT-FUENTES, THE UNIVERSITY OF TENNESSEE, DORI EDSON NAVA, CPACT, and M. J. ZOTTI, UFPEL.

Subjects
Praga
Abstract

Insecticidal gene silencing by RNA interference (RNAi) involves a post-transcriptional mechanism with great potential for insect control. Here, we aim to summarize the progress on RNAi research toward control of insect pests in the Neotropical region and discuss factors determining its efficacy and prospects for pest management. We include an overview of the available RNAi information for Neotropical pests in the Lepidoptera, Coleoptera, Diptera, and Hemiptera orders. Emphasis is put on significant findings in the use of RNAi against relevant Neotropical pests, including diamondback moth (Plutella xylostella L.), Asian citrus psyllid (Diaphorina citri Kuwayama), and the cotton boll weevil (Anthonomus grandis Boheman). We also examine the main factors involved in insecticidal RNAi efficiency and major advances to improve screening of lethal genes, formulation, and delivery. Few studies detail resistance mechanisms to RNAi, demonstrating a need for more research. Advances in formulation, delivery, and resistance management tools for insecticidal RNAi in the Neotropics can provide a basis for efficient field application. Made available in DSpace on 2021-01-27T09:04:16Z (GMT). No. of bitstreams: 1 Artigo-4-Insecticidal-Gene-Silencing-by-RNAi-in-the-Neotropical-Region.pdf: 596312 bytes, checksum: 623949cb9a8daa98f8dbb626ccb8b041 (MD5) Previous issue date: 2020

Published
2020

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