65 results on '"Sorci, M"'
Search Results
2. New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia
- Author
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Ianniello, Z, Sorci, M, Ginistrelli, L, Iaiza, A, Marchioni, M, Tito, C, Capuano, E, Masciarelli, S, Ottone, T, Attrotto, C, Rizzo, M, Franceschini, L, de Pretis, S, Voso, M, Pelizzola, M, Fazi, F, Fatica, A, Ianniello Z, Sorci M, Ginistrelli LC, Iaiza A, Marchioni M, Tito C, Capuano E, Masciarelli S, Ottone T, Attrotto C, Rizzo M, Franceschini L, de Pretis S, Voso MT, Pelizzola M, Fazi F, Fatica A, Ianniello, Z, Sorci, M, Ginistrelli, L, Iaiza, A, Marchioni, M, Tito, C, Capuano, E, Masciarelli, S, Ottone, T, Attrotto, C, Rizzo, M, Franceschini, L, de Pretis, S, Voso, M, Pelizzola, M, Fazi, F, Fatica, A, Ianniello Z, Sorci M, Ginistrelli LC, Iaiza A, Marchioni M, Tito C, Capuano E, Masciarelli S, Ottone T, Attrotto C, Rizzo M, Franceschini L, de Pretis S, Voso MT, Pelizzola M, Fazi F, and Fatica A
- Abstract
Chronic myeloid leukemia (CML) is a myeloproliferative neoplasm caused by the presence of tyrosine kinase BCR-ABL1 fusion protein, which deregulate transcription and mRNA translation. Tyrosine kinase inhibitors (TKIs) are the first-choice treatment. However, resistance to TKIs remains a challenge to cure CML patients. Here, we reveal that the m6A methyltransferase complex METTL3/METTL14 is upregulated in CML patients and that is required for proliferation of primary CML cells and CML cell lines sensitive and resistant to the TKI imatinib. We demonstrate that depletion of METTL3 strongly impairs global translation efficiency. In particular, our data show that METTL3 is crucial for the expression of genes involved in ribosome biogenesis and translation. Specifically, we found that METTL3 directly regulates the level of PES1 protein identified as an oncogene in several tumors. We propose a model in which nuclear METTL3/METTL14 methyltransferase complex modified nascent transcripts whose translation is enhanced by cytoplasmic localization of METTL3, independently from its catalytic activity. In conclusion, our results point to METTL3 as a novel relevant oncogene in CML and as a promising therapeutic target for TKI resistant CML.
- Published
- 2021
3. Efficacia e sicurezza dei farmaci anti IL 23 nel trattamento della psoriasi in placche in soggetti con infezione da HIV
- Author
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Conti, A, Carugno, A, Sorci, M, Pacific, A, Damiani, G, Andrea Conti, Andrea Carugno, Maria R. Sorci, Alessia Pacific, Giovanni Damiani, Conti, A, Carugno, A, Sorci, M, Pacific, A, Damiani, G, Andrea Conti, Andrea Carugno, Maria R. Sorci, Alessia Pacific, and Giovanni Damiani
- Published
- 2022
4. Modelling human perception of static facial expressions
- Author
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Sorci, M., Antonini, G., Cruz, J., Robin, T., Bierlaire, M., and Thiran, J.-Ph.
- Published
- 2010
- Full Text
- View/download PDF
5. New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia
- Author
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Ianniello, Z., Sorci, M., Ceci Ginistrelli, L., Iaiza, A., Marchioni, M., Tito, C., Capuano, E., Masciarelli, Silvia, Ottone, T., Attrotto, C., Rizzo, M., Franceschini, L., de Pretis, S., Voso, M. T., Pelizzola, M., Fazi, F., Fatica, A., Masciarelli S., Ianniello, Z., Sorci, M., Ceci Ginistrelli, L., Iaiza, A., Marchioni, M., Tito, C., Capuano, E., Masciarelli, Silvia, Ottone, T., Attrotto, C., Rizzo, M., Franceschini, L., de Pretis, S., Voso, M. T., Pelizzola, M., Fazi, F., Fatica, A., and Masciarelli S.
- Abstract
Chronic myeloid leukemia (CML) is a myeloproliferative neoplasm caused by the presence of tyrosine kinase BCR-ABL1 fusion protein, which deregulate transcription and mRNA translation. Tyrosine kinase inhibitors (TKIs) are the first-choice treatment. However, resistance to TKIs remains a challenge to cure CML patients. Here, we reveal that the m(6)A methyltransferase complex METTL3/METTL14 is upregulated in CML patients and that is required for proliferation of primary CML cells and CML cell lines sensitive and resistant to the TKI imatinib. We demonstrate that depletion of METTL3 strongly impairs global translation efficiency. In particular, our data show that METTL3 is crucial for the expression of genes involved in ribosome biogenesis and translation. Specifically, we found that METTL3 directly regulates the level of PES1 protein identified as an oncogene in several tumors. We propose a model in which nuclear METTL3/METTL14 methyltransferase complex modified nascent transcripts whose translation is enhanced by cytoplasmic localization of METTL3, independently from its catalytic activity. In conclusion, our results point to METTL3 as a novel relevant oncogene in CML and as a promising therapeutic target for TKI resistant CML.
- Published
- 2021
6. The clinical spectrum of COVID-19–associated cutaneous manifestations: An Italian multicenter study of 200 adult patients
- Author
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Marzano, A. V., Genovese, Giannicola, Moltrasio, C., Gaspari, V., Vezzoli, P., Maione, V., Misciali, C., Sena, P., Patrizi, A., Offidani, A., Quaglino, P., Arco, R., Caproni, M., Rovesti, M., Bordin, G., Recalcati, S., Potenza, C., Guarneri, C., Fabbrocini, G., Tomasini, C., Sorci, M., Lombardo, M., Gisondi, P., Conti, A., Casazza, G., Peris, Ketty, Calzavara-Pinton, P., Berti, Emanuele, Genovese G., Peris K. (ORCID:0000-0002-5237-0463), Berti E., Marzano, A. V., Genovese, Giannicola, Moltrasio, C., Gaspari, V., Vezzoli, P., Maione, V., Misciali, C., Sena, P., Patrizi, A., Offidani, A., Quaglino, P., Arco, R., Caproni, M., Rovesti, M., Bordin, G., Recalcati, S., Potenza, C., Guarneri, C., Fabbrocini, G., Tomasini, C., Sorci, M., Lombardo, M., Gisondi, P., Conti, A., Casazza, G., Peris, Ketty, Calzavara-Pinton, P., Berti, Emanuele, Genovese G., Peris K. (ORCID:0000-0002-5237-0463), and Berti E.
- Abstract
Background: COVID-19 is associated with a wide range of skin manifestations. Objective: To describe the clinical characteristics of COVID-19–associated skin manifestations and explore the relationships among the 6 main cutaneous phenotypes and systemic findings. Methods: Twenty-one Italian Dermatology Units were asked to collect the demographic, clinical, and histopathologic data of 200 patients with COVID-19–associated skin manifestations. The severity of COVID-19 was classified as asymptomatic, mild, moderate, or severe. Results: A chilblain-like acral pattern was significantly associated with a younger age (P <.0001) and, after adjusting for age, significantly associated with less severe COVID-19 (P =.0009). However, the median duration of chilblain-like lesions was significantly longer than that of the other cutaneous manifestations taken together (P <.0001). Patients with moderate/severe COVID-19 were more represented than those with asymptomatic/mild COVID-19 among the patients with cutaneous manifestations other than chilblain-like lesions, but only the confluent erythematous/maculo-papular/morbilliform phenotype was significantly associated with more severe COVID-19 (P =.015), and this significance disappeared after adjustment for age. Limitations: Laboratory confirmation of COVID-19 was not possible in all cases. Conclusions: After adjustment for age, there was no clear-cut spectrum of COVID-19 severity in patients with COVID-19–related skin manifestations, although chilblain-like acral lesions were more frequent in younger patients with asymptomatic/pauci-symptomatic COVID-19.
- Published
- 2021
7. CHARACTERIZATION TECHNIQUES FOR AFFINITY MEMBRANES: P78
- Author
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Boi, C., Cattoli, F., Sorci, M., and Sarti, G. C.
- Published
- 2005
8. EQUILIBRIUM AND KINETICS IN SEPARATION OF MBP-FUSION PROTEINS WITH AMYLOSE AFFINITY MEMBRANES: P80
- Author
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Cattoli, F., Sorci, M., Boi, C., and Sarti, G. C.
- Published
- 2005
9. PURIFICATION OF LECTINS BY AFFINITY MEMBRANE ADSORPTION: 17
- Author
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Boi, C., Cattoli, F., Sorci, M., and Sarti, G. C.
- Published
- 2005
10. Argonaute 2 drives miR-145-5p-dependent gene expression program in breast cancer cells
- Author
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Bellissimo, T., Tito, C., Ganci, F., Sacconi, A., Masciarelli, Silvia, Di Martino, G., Porta, N., Cirenza, M., Sorci, M., De Angelis, L., Rosa, P., Calogero, A., Fatica, A., Petrozza, V., Fontemaggi, G., Blandino, G., Fazi, F., Masciarelli S., Bellissimo, T., Tito, C., Ganci, F., Sacconi, A., Masciarelli, Silvia, Di Martino, G., Porta, N., Cirenza, M., Sorci, M., De Angelis, L., Rosa, P., Calogero, A., Fatica, A., Petrozza, V., Fontemaggi, G., Blandino, G., Fazi, F., and Masciarelli S.
- Abstract
To perform their regulatory functions, microRNAs (miRNAs) must assemble with any of the four mammalian Argonaute (Ago) family of proteins, Ago1–4, into an effector complex known as the RNA-induced silencing complex (RISC). While the mature miRNA guides the RISC complex to its target mRNA, the Ago protein represses mRNA translation. The specific roles of the various Ago members in mediating miRNAs activity, however, haven’t been clearly established. In this study, we investigated the contribution of Ago2, the only human Ago protein endowed with nuclease activity, to the function of tumor-suppressor miR-145-5p in breast cancer (BC). We show that miR-145-5p and Ago2 protein are concomitantly downregulated in BC tissues and that restoration of miR-145-5p expression in BC cells leads to Ago2 protein induction through the loosening of Ago2 mRNA translational repression. Functionally, miR-145-5p exerts its inhibitory activity on cell migration only in presence of Ago2, while, upon Ago2 depletion, we observed increased miR-145/Ago1 complex and enhanced cell motility. Profiling by microarray of miR-145-5p target mRNAs, in BC cells depleted or not of Ago2, revealed that miR-145-5p drives Ago2-dependent and -independent activities. Our results highlight that the Ago2 protein in cancer cells strictly dictates miR-145-5p tumor suppressor activity.
- Published
- 2019
11. The miR-223 host non-coding transcript linc-223 induces IRF4 expression in acute myeloid leukemia by acting as a competing endogenous RNA
- Author
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Mangiavacchi, A., Sorci, M., Masciarelli, Silvia, Larivera, S., Legnini, I., Iosue, I., Bozzoni, I., Fazi, F., Fatica, A., Masciarelli S., Mangiavacchi, A., Sorci, M., Masciarelli, Silvia, Larivera, S., Legnini, I., Iosue, I., Bozzoni, I., Fazi, F., Fatica, A., and Masciarelli S.
- Abstract
Alterations in genetic programs required for terminal myeloid differentiation and aberrant proliferation characterize acute myeloid leukemia (AML) cells. Here, we identify the host transcript of miR-223, linc-223, as a novel functional long noncoding RNA (lncRNA) in AML. We show that from the primary nuclear transcript, the alternative production of miR-223 and linc-223 is finely regulated during monocytic differentiation. Moreover, linc-223 expression inhibits cell cycle progression and promotes monocytic differentiation of AML cells. We also demonstrate that endogenous linc-223 localizes in the cytoplasm and acts as a competing endogenous RNA for miR- 125-5p, an oncogenic microRNA in leukemia. In particular, we show that linc-223 directly binds to miR-125-5p and that its knockdown increases the repressing activity of miR-125-5p resulting in the downregulation of its target interferon regulatory factor 4 (IRF4), which it was previously shown to inhibit the oncogenic activity of miR-125-5p in vivo. Furthermore, data from primary AML samples show significant downregulation of linc-223 in different AML subtypes. Therein, these findings indicate that the newly identified lncRNA linc-223 may have an important role in myeloid differentiation and leukemogenesis, at least in part, by cross-talking with IRF4 mRNA.
- Published
- 2016
12. On the application of a conceptual abrasion model in six Icelandic Berm Breakwaters
- Author
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Archetti R., Lamberti A., Sorci M., Sigurdurson S., Erlingsson S., Bjarki Smarason O., TOMASICCHIO, Giuseppe, Archetti, R., Lamberti, A., Tomasicchio, Giuseppe, Sorci, M., Sigurdurson, S., Erlingsson, S., and Bjarki Smarason, O.
- Published
- 2002
13. Adsorption and elution of lectins by affinity membranes
- Author
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Sorci, M., Boi, C., Facchini, R., Giulio Cesare Sarti, Sorci, Mirco, Boi, Cristiana, Facchini, R., and Sarti, GIULIO CESARE
- Subjects
ADSORPTION ,LECTINS ,ELUTION ,AFFINITY MEMBRANES - Abstract
Affinity membranes suitable for the purification of lectins were prepared by chemical modifications of a cellulose matrix. As a model protein a lectin obtained by chromatographic techniques from Momordica charantia seeds was mainly used; Peanut agglutinin and Ricinus communis agglutinin were also considered. Different ligands were tested according to the different affinity towards the lectins used. Among the various ligands tested arabinogalactan and N-acetyl-D-galactosamine gave the best performances. The ligand binding reaction onto the epoxy groups of the activated matrices has been optimized with respect to concentration of ligand, temperature and reaction time. The ligand immobilized on the membrane surface is quantified indirectly by measuring the amount of protein bound to the membrane. The kinetics of adsorption and desorption of the purification process has been studied in detail for the different supports. Modified membranes have been used in separation process of lectins with good binding capacity towards the protein of interest
- Published
- 2005
14. Automatic Mallampati Classification Using Active Appearance Models
- Author
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Cuendet, G.L., Yuce, A., Sorci, M., Schoettker, P., Perruchoud, C., Thiran, J.P., Cuendet, G.L., Yuce, A., Sorci, M., Schoettker, P., Perruchoud, C., and Thiran, J.P.
- Abstract
Difficult tracheal intubation assessment is an important research topic in anesthesia as failed intubations are important causes of mortality in anesthetic practice. The modified Mallampati score is widely used, alone or in conjunction with other criteria, to predict the difficulty of intubation. This work presents an automatic method to assess the modified Mallampati score from an image of a patient with the mouth wide open. For this purpose we propose an active appearance models (AAM) based method and use linear support vector machines (SVM) to select a subset of relevant features obtained using the AAM. This feature selection step proves to be essential as it improves drastically the performance of classification, which is obtained using SVM with RBF kernel and majority voting. We test our method on images of 100 patients undergoing elective surgery and achieve 97.9% accuracy in the leave-one-out crossvalidation test and provide a key element to an automatic difficult intubation assessment system.
- Published
- 2012
15. Automatic prediction of difficult intubation from video
- Author
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Schoettker, P., primary, Cuendet, G., additional, Thiran, J. -P., additional, Sorci, M., additional, Yüce, A., additional, and Perruchoud, C., additional
- Published
- 2013
- Full Text
- View/download PDF
16. Modelling human perception of static facial expressions
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Sorci, M., primary, Thiran, J.Ph., additional, Cruz, J., additional, Robin, T., additional, and Bierlaire, M., additional
- Published
- 2008
- Full Text
- View/download PDF
17. Adsorption of pure recombinant MBP-fusion proteins on amylose affinity membranes
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CATTOLI, F, primary, BOI, C, additional, SORCI, M, additional, and SARTI, G, additional
- Published
- 2006
- Full Text
- View/download PDF
18. On the estimation of geodesic paths on sampled manifolds under random projections.
- Author
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Mahmoudi, M., Vandergheynst, P., and Sorci, M.
- Published
- 2008
- Full Text
- View/download PDF
19. Fisher's discriminant and relevant component analysis for static facial expression classification.
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Sorci, M., Antonini, G., and Thiran, Jean-Philippe
- Published
- 2007
20. Fisher's discriminant and Relevant Component Analysis for static facial expression classification
- Author
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Sorci, M., Antonini, G., and Jean-Philippe Thiran
- Subjects
ComputingMethodologies_PATTERNRECOGNITION ,LTS5 ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Facial expression recognition ,Dimensionality reduction - Abstract
This paper addresses the issue of automatic classification of the six universal emotional categories (joy, surprise, fear, anger, disgust, sadness) in the case of static images. Appearance parameters are extracted by an active appearance model(AAM) representing the input for the classification step. We show how Relevant Component Analysis (RCA) in combination with Fisher's Linear Discriminant (FLD) provides a good "plug-\&-play" classifier in the context of facial expression recognition framework. We test this method against several other classification techniques, including LDA, GDA and SVM, on the Cohn-Kanade database.
21. Relevant Component Analysis for static facial expression classification
- Author
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Sorci, M., Antonini, G., and Thiran, J.
- Subjects
relevant component analysis ,LTS5 ,Facial expression classification - Abstract
This paper addresses the issue of automatic classification of the six universal emotional categories (joy, surprise, fear, anger, disgust, sadness) in the case of static images. Appearance parameters are extracted by an active appearance model(AAM) representing the input for the classifi- cation step. We introduce Relevant Component Analysis (RCA) in the context of facial expression recognition framework and we test this method against several other classi- fication techniques, including LDA, GDA and SVM, on the Cohn-Kanade database.
22. Combining SVMs for face class modeling
- Author
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Meynet, J., Popovici, V., Sorci, M., and Jean-Philippe Thiran
- Subjects
face multiple svm ,LTS5 - Abstract
We present a method for combining a number of Support Vector Machines trained independently in the eigenface space and we apply it to face class modeling. We first train several
23. Head pose detection using Fast Robust PCA for Side Active Appearance Models under Occlusion
- Author
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Yiice, A., Sorci, M., and Jean-Philippe Thiran
- Subjects
Face tracking ,LTS5 ,head pose
24. ChemInform Abstract: CHEMISTRY OF HETEROCYCLIC COMPOUNDS. 48. SYNTHESIS OF MULTIHETEROMACROCYCLES CONTAINING THE 4,6-PYRIMIDINO MOIETY CONNECTED BY CARBON-OXYGEN AND/OR -SULFUR LINKAGES
- Author
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NEWKOME, G. R., primary, NAYAK, A., additional, SORCI, M. G., additional, and BENTON, W. H., additional
- Published
- 1980
- Full Text
- View/download PDF
25. The clinical spectrum of COVID-19-associated cutaneous manifestations: An Italian multicenter study of 200 adult patients
- Author
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Angelo V. Marzano, Claudio Guarneri, Pamela Vezzoli, Vincenzo Maione, Pietro Quaglino, Cosimo Misciali, Valeria Gaspari, Carlo Tomasini, Concetta Potenza, Ketty Peris, Giovanni Casazza, Giovanni Genovese, Emilio Berti, Paolo Sena, Marzia Caproni, Miriam Rovesti, Renato Arco, Gabriella Fabbrocini, Mariarita Sorci, Piergiacomo Calzavara-Pinton, Chiara Moltrasio, Paolo Gisondi, Annamaria Offidani, Giorgio Bordin, Andrea Conti, Annalisa Patrizi, Sebastiano Recalcati, Maurizio Lombardo, Marzano, A. V., Genovese, G., Moltrasio, C., Gaspari, V., Vezzoli, P., Maione, V., Misciali, C., Sena, P., Patrizi, A., Offidani, A., Quaglino, P., Arco, R., Caproni, M., Rovesti, M., Bordin, G., Recalcati, S., Potenza, C., Guarneri, C., Fabbrocini, G., Tomasini, C., Sorci, M., Lombardo, M., Gisondi, P., Conti, A., Casazza, G., Peris, K., Calzavara-Pinton, P., and Berti, E.
- Subjects
Adult ,Male ,medicine.medical_specialty ,coronavirus ,COVID-19 ,infection ,SARS-CoV-2 ,skin manifestations ,Age of Onset ,Aged ,Chilblains ,Humans ,Italy ,Middle Aged ,Severity of Illness Index ,Skin Diseases, Viral ,Dermatology ,Asymptomatic ,Skin Diseases ,Article ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Interquartile range ,Severity of illness ,medicine ,Maculopapular rash ,Viral ,Livedo reticularis ,business.industry ,medicine.disease ,Morbilliform ,coronaviru ,030220 oncology & carcinogenesis ,medicine.symptom ,Age of onset ,business ,Settore MED/35 - MALATTIE CUTANEE E VENEREE - Abstract
Background COVID-19 is associated with a wide range of skin manifestations. Objective To describe the clinical characteristics of COVID-19-associated skin manifestations, and explore the relationships between the six main cutaneous phenotypes and systemic findings. Methods Twenty-one Italian Dermatology Units were asked to collect the demographic, clinical and histopathological data of 200 patients with COVID-19-associated skin manifestations. The severity of COVID-19 was classified as asymptomatic, mild, moderate, or severe. Results A chilblain-like acral pattern significantly associated with a younger age (p, There are six main COVID-19-related cutaneous phenotypes, but only the chilblain-like acral pattern significantly associated with younger age. After adjusting for patient age, there was no spectrum of COVID-19 severity in relation to cutaneous phenotypes, although the longer-lasting chilblain-like acral pattern significantly associated with milder disease.
- Published
- 2020
26. Phosphate-Driven Interfacial Self-Assembly of Silk Fibroin for Continuous Noncovalent Growth of Nanothin Defect-Free Coatings.
- Author
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Wigham C, Fink TD, Sorci M, O'Reilly P, Park S, Kim J, Varude VR, and Zha RH
- Subjects
- Animals, Adsorption, Nanostructures chemistry, Coated Materials, Biocompatible chemistry, Surface Properties, Kinetics, Hydrogen-Ion Concentration, Fibroins chemistry, Bombyx chemistry, Phosphates chemistry
- Abstract
Silk fibroin is a fiber-forming protein derived from the thread of Bombyx mori silkworm cocoons. This biocompatible protein, under the kosmotropic influence of potassium phosphate, can undergo supramolecular self-assembly driven by a random coil to β-sheet secondary structure transition. By leveraging concurrent nonspecific adsorption and self-assembly of silk fibroin, we demonstrate an interfacial phenomenon that yields adherent, defect-free nanothin protein coatings that grow continuously in time, without observable saturation in mass deposition. This noncovalent growth of silk fibroin coatings is a departure from traditionally studied protein adsorption phenomena, which generally yield adsorbed layers that saturate in mass with time and often do not completely cover the surface. Here, we explore the fundamental mechanisms of coating growth by examining the effects of coating solution parameters that promote or inhibit silk fibroin self-assembly. Results show a strong dependence of coating kinetics and structure on solution pH, salt species, and salt concentration. Moreover, coating growth was observed to occur in two stages: an early stage driven by protein-surface interactions and a late stage driven by protein-protein interactions. To describe this phenomenon, we developed a kinetic adsorption model with Langmuir-like behavior at early times and a constant steady-state growth rate at later times. Structural analysis by FTIR and photoinduced force microscopy show that small β-sheet-rich structures serve as anchoring sites for absorbing protein nanoaggregates, which is critical for coating formation. Additionally, β-sheets are preferentially located at the interface between protein nanoaggregates in the coating, suggesting their role in forming stable, robust coatings.
- Published
- 2024
- Full Text
- View/download PDF
27. Targeting Iron - Respiratory Reciprocity Promotes Bacterial Death.
- Author
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Sharifian Gh M, Norouzi F, Sorci M, Zaid TS, Pier GB, Achimovich A, Ongwae GM, Liang B, Ryan M, Lemke M, Belfort G, Gadjeva M, Gahlmann A, Pires MM, Venter H, Harris TE, and Laurie GW
- Abstract
Discovering new bacterial signaling pathways offers unique antibiotic strategies. Here, through an unbiased resistance screen of 3,884 gene knockout strains, we uncovered a previously unknown non-lytic bactericidal mechanism that sequentially couples three transporters and downstream transcription to lethally suppress respiration of the highly virulent P. aeruginosa strain PA14 - one of three species on the WHO's 'Priority 1: Critical' list. By targeting outer membrane YaiW, cationic lacritin peptide 'N-104' translocates into the periplasm where it ligates outer loops 4 and 2 of the inner membrane transporters FeoB and PotH, respectively, to suppress both ferrous iron and polyamine uptake. This broadly shuts down transcription of many biofilm-associated genes, including ferrous iron-dependent TauD and ExbB1. The mechanism is innate to the surface of the eye and is enhanced by synergistic coupling with thrombin peptide GKY20. This is the first example of an inhibitor of multiple bacterial transporters., Competing Interests: DECLARATION OF INTERESTS GWL is cofounder and CSO of TearSolutions, Inc; and cofounder and CTO of IsletRegen, LLC. Other authors declare no competing interests.
- Published
- 2024
- Full Text
- View/download PDF
28. Tuning Structural Defects on a Nominal Single-Layered Graphene Oxide Membrane for Selective Separation of Biomolecules.
- Author
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Behera DK, Sengupta B, Zhou F, Sorci M, Li H, Xu W, Dong Q, Belfort G, and Yu M
- Subjects
- Membranes, Biotechnology, Muramidase, Graphite
- Abstract
Two-dimensional (2D) materials provide a great opportunity for fabricating ideal membranes with ultrathin thickness for high-throughput separation. Graphene oxide (GO), owing to its hydrophilicity and functionality, has been extensively studied for membrane applications. However, fabrication of single-layered GO-based membranes utilizing structural defects for molecular permeation is still a great challenge. Optimization of the deposition methodology of GO flakes could offer a potential solution for fabricating desired nominal single-layered (NSL) membranes that can offer a dominant and controllable flow through structural defects of GO. In this study, a sequential coating methodology was adopted for depositing a NSL GO membrane, which is expected to have no or minimum stacking of GO flakes and thus ensure GO's structural defects as the major transport pathway. We have demonstrated effective rejection of different model proteins (bovine serum albumin (BSA), lysozyme, and immunoglobulin G (IgG)) by tuning the structural defect size via oxygen plasma etching. By generating appropriate structural defects, similar-sized proteins (myoglobin and lysozyme; molecular weight ratio (MWR): ∼1.14) were effectively separated with a separation factor of ∼6 and purity of 92%. These findings may provide new opportunities of using GO flakes for fabricating NSL membranes with tunable pores for applications in the biotechnology industry.
- Published
- 2023
- Full Text
- View/download PDF
29. Virucidal N95 Respirator Face Masks via Ultrathin Surface-Grafted Quaternary Ammonium Polymer Coatings.
- Author
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Sorci M, Fink TD, Sharma V, Singh S, Chen R, Arduini BL, Dovidenko K, Heldt CL, Palermo EF, and Zha RH
- Subjects
- Antiviral Agents pharmacology, Masks, N95 Respirators, Polymers pharmacology, Polypropylenes, Ammonium Compounds, Viruses
- Abstract
N95 respirator face masks serve as effective physical barriers against airborne virus transmission, especially in a hospital setting. However, conventional filtration materials, such as nonwoven polypropylene fibers, have no inherent virucidal activity, and thus, the risk of surface contamination increases with wear time. The ability of face masks to protect against infection can be likely improved by incorporating components that deactivate viruses on contact. We present a facile method for covalently attaching antiviral quaternary ammonium polymers to the fiber surfaces of nonwoven polypropylene fabrics that are commonly used as filtration materials in N95 respirators via ultraviolet (UV)-initiated grafting of biocidal agents. Here, C
12 -quaternized benzophenone is simultaneously polymerized and grafted onto melt-blown or spunbond polypropylene fabric using 254 nm UV light. This grafting method generated ultrathin polymer coatings which imparted a permanent cationic charge without grossly changing fiber morphology or air resistance across the filter. For melt-blown polypropylene, which comprises the active filtration layer of N95 respirator masks, filtration efficiency was negatively impacted from 72.5 to 51.3% for uncoated and coated single-ply samples, respectively. Similarly, directly applying the antiviral polymer to full N95 masks decreased the filtration efficiency from 90.4 to 79.8%. This effect was due to the exposure of melt-blown polypropylene to organic solvents used in the coating process. However, N95-level filtration efficiency could be achieved by wearing coated spunbond polypropylene over an N95 mask or by fabricating N95 masks with coated spunbond as the exterior layer. Coated materials demonstrated broad-spectrum antimicrobial activity against several lipid-enveloped viruses, as well as Staphylococcus aureus and Escherichia coli bacteria. For example, a 4.3-log reduction in infectious MHV-A59 virus and a 3.3-log reduction in infectious SuHV-1 virus after contact with coated filters were observed, although the level of viral deactivation varied significantly depending on the virus strain and protocol for assaying infectivity.- Published
- 2022
- Full Text
- View/download PDF
30. Highly Sensitive Immuno-CRISPR Assay for CXCL9 Detection.
- Author
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Lee I, Kwon SJ, Sorci M, Heeger PS, and Dordick JS
- Subjects
- Humans, Kidney Transplantation, Limit of Detection, RNA, Streptavidin, Transplant Recipients, Chemokine CXCL9 urine, Clustered Regularly Interspaced Short Palindromic Repeats, DNA, Single-Stranded, Graft Rejection diagnosis, Immunoassay
- Abstract
CRISPR-based detection of target DNA or RNA exploits a dual function, including target sequence-specific recognition followed by trans -cleavage activity of a collateral ssDNA linker between a fluorophore (F) and a quencher (Q), which amplifies a fluorescent signal upon cleavage. In this work, we have extended such dual functionality in a modified immunoassay format to detect a target protein, CXCL9, which is markedly elevated in the urine of kidney transplant recipients undergoing acute rejection episodes. To establish the "immuno-CRISPR" assay, we used anti-CXCL9 antibody-DNA barcode conjugates to target CXCL9 and amplify fluorescent signals via Cas12a-based trans -cleavage activity of FQ reporter substrates, respectively, and in the absence of an isothermal amplification step. To enhance detection sensitivity, the DNA barcode system was engineered by introducing multiple Cas12a recognition sites. Use of biotinylated DNA barcodes enabled self-assembly onto streptavidin (SA) to generate SA-DNA barcode complexes to increase the number and density of Cas12a recognition sites attached to biotinylated anti-CXCL9 antibody. As a result, we improved the rate of CXCL9 detection approximately 8-fold when compared to the use of a monomeric DNA barcode. The limit of detection (LOD) for CXCL9 using the immuno-CRISPR assay was 14 pg/mL, which represented an ∼7-fold improvement when compared to traditional HRP-based ELISA. Selectivity was shown with a lack of crossover reactivity with the related chemokine CXCL1. Finally, we successfully evaluated the presence of CXCL9 in urine samples from 11 kidney transplant recipients using the immuno-CRISPR assay, resulting in 100% accuracy to clinical CXCL9 determination and paving the way for use as a point-of-care noninvasive biomarker for the detection of kidney transplant rejection.
- Published
- 2021
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31. New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia.
- Author
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Ianniello Z, Sorci M, Ceci Ginistrelli L, Iaiza A, Marchioni M, Tito C, Capuano E, Masciarelli S, Ottone T, Attrotto C, Rizzo M, Franceschini L, de Pretis S, Voso MT, Pelizzola M, Fazi F, and Fatica A
- Subjects
- Adenosine analogs & derivatives, Adenosine metabolism, Catalysis, Cell Line, Tumor, Cell Nucleus metabolism, Cell Proliferation, Cell Survival, Drug Resistance, Neoplasm drug effects, Gene Knockdown Techniques, Humans, Imatinib Mesylate pharmacology, Imatinib Mesylate therapeutic use, Leukemia, Myelogenous, Chronic, BCR-ABL Positive drug therapy, Models, Biological, Proto-Oncogene Proteins c-myc metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Up-Regulation, Leukemia, Myelogenous, Chronic, BCR-ABL Positive genetics, Leukemia, Myelogenous, Chronic, BCR-ABL Positive pathology, Methyltransferases metabolism, Protein Biosynthesis
- Abstract
Chronic myeloid leukemia (CML) is a myeloproliferative neoplasm caused by the presence of tyrosine kinase BCR-ABL1 fusion protein, which deregulate transcription and mRNA translation. Tyrosine kinase inhibitors (TKIs) are the first-choice treatment. However, resistance to TKIs remains a challenge to cure CML patients. Here, we reveal that the m
6 A methyltransferase complex METTL3/METTL14 is upregulated in CML patients and that is required for proliferation of primary CML cells and CML cell lines sensitive and resistant to the TKI imatinib. We demonstrate that depletion of METTL3 strongly impairs global translation efficiency. In particular, our data show that METTL3 is crucial for the expression of genes involved in ribosome biogenesis and translation. Specifically, we found that METTL3 directly regulates the level of PES1 protein identified as an oncogene in several tumors. We propose a model in which nuclear METTL3/METTL14 methyltransferase complex modified nascent transcripts whose translation is enhanced by cytoplasmic localization of METTL3, independently from its catalytic activity. In conclusion, our results point to METTL3 as a novel relevant oncogene in CML and as a promising therapeutic target for TKI resistant CML., (© 2021. The Author(s).)- Published
- 2021
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32. The clinical spectrum of COVID-19-associated cutaneous manifestations: An Italian multicenter study of 200 adult patients.
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Marzano AV, Genovese G, Moltrasio C, Gaspari V, Vezzoli P, Maione V, Misciali C, Sena P, Patrizi A, Offidani A, Quaglino P, Arco R, Caproni M, Rovesti M, Bordin G, Recalcati S, Potenza C, Guarneri C, Fabbrocini G, Tomasini C, Sorci M, Lombardo M, Gisondi P, Conti A, Casazza G, Peris K, Calzavara-Pinton P, and Berti E
- Subjects
- Adult, Age of Onset, Aged, Chilblains virology, Humans, Italy, Male, Middle Aged, SARS-CoV-2, Severity of Illness Index, Skin Diseases, Viral pathology, COVID-19 diagnosis, Skin Diseases, Viral diagnosis
- Abstract
Background: COVID-19 is associated with a wide range of skin manifestations., Objective: To describe the clinical characteristics of COVID-19-associated skin manifestations and explore the relationships among the 6 main cutaneous phenotypes and systemic findings., Methods: Twenty-one Italian Dermatology Units were asked to collect the demographic, clinical, and histopathologic data of 200 patients with COVID-19-associated skin manifestations. The severity of COVID-19 was classified as asymptomatic, mild, moderate, or severe., Results: A chilblain-like acral pattern was significantly associated with a younger age (P < .0001) and, after adjusting for age, significantly associated with less severe COVID-19 (P = .0009). However, the median duration of chilblain-like lesions was significantly longer than that of the other cutaneous manifestations taken together (P < .0001). Patients with moderate/severe COVID-19 were more represented than those with asymptomatic/mild COVID-19 among the patients with cutaneous manifestations other than chilblain-like lesions, but only the confluent erythematous/maculo-papular/morbilliform phenotype was significantly associated with more severe COVID-19 (P = .015), and this significance disappeared after adjustment for age., Limitations: Laboratory confirmation of COVID-19 was not possible in all cases., Conclusions: After adjustment for age, there was no clear-cut spectrum of COVID-19 severity in patients with COVID-19-related skin manifestations, although chilblain-like acral lesions were more frequent in younger patients with asymptomatic/pauci-symptomatic COVID-19., Competing Interests: Conflicts of interest None disclosed., (Copyright © 2021 American Academy of Dermatology, Inc. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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33. Cell-free production of isobutanol: A completely immobilized system.
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Wong M, Zha J, Sorci M, Gasparis C, Belfort G, and Koffas M
- Subjects
- Alcohol Dehydrogenase, Biofuels, Butanols, Clostridium thermocellum
- Abstract
A completely immobilized cell-free enzyme reaction system was used to convert ketoisovaleric acid to isobutanol, a desirable biofuel, with a molar yield of 43% and a titer of 2 g/L, which are comparable to high performing in vivo systems (e.g. 41% and 5.4 g/L, respectively, for Clostridium thermocellum). The approach utilizes, for the first time, a series of previously reported enzyme mutants that either overproduce the product or are more stable when compared with their wild type. The selected enzyme variants include keto-acid decarboxylase attached to a maltose binding protein, alcohol dehydrogenase, and formate dehydrogenase. These enzymes were screened for thermal, pH, and product stability to choose optima for this system which were pH 7.4 and 35 °C. This system is designed to address well-known limitations of in vivo systems such as low product concentrations due to product feedback inhibition, instability of cells, and lack of economic product recovery., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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34. Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization.
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Mihailescu M, Sorci M, Seckute J, Silin VI, Hammer J, Perrin BS Jr, Hernandez JI, Smajic N, Shrestha A, Bogardus KA, Greenwood AI, Fu R, Blazyk J, Pastor RW, Nicholson LK, Belfort G, and Cotten ML
- Subjects
- Amino Acid Sequence, Animals, Antimicrobial Cationic Peptides chemistry, Fish Proteins chemistry, Fish Proteins metabolism, Fishes, Fluoresceins metabolism, Fluorescent Dyes metabolism, Hydrogen-Ion Concentration, Lipid Bilayers chemistry, Molecular Dynamics Simulation, Permeability drug effects, Phosphatidylcholines chemistry, Phosphatidylglycerols chemistry, Surface-Active Agents chemistry, Antimicrobial Cationic Peptides metabolism, Histidine chemistry, Lipid Bilayers metabolism, Surface-Active Agents metabolism
- Abstract
Piscidins are histidine-enriched antimicrobial peptides that interact with lipid bilayers as amphipathic α-helices. Their activity at acidic and basic pH in vivo makes them promising templates for biomedical applications. This study focuses on p1 and p3, both 22-residue-long piscidins with 68% sequence identity. They share three histidines (H3, H4, and H11), but p1, which is significantly more permeabilizing, has a fourth histidine (H17). This study investigates how variations in amphipathic character associated with histidines affect the permeabilization properties of p1 and p3. First, we show that the permeabilization ability of p3, but not p1, is strongly inhibited at pH 6.0 when the conserved histidines are partially charged and H17 is predominantly neutral. Second, our neutron diffraction measurements performed at low water content and neutral pH indicate that the average conformation of p1 is highly tilted, with its C-terminus extending into the opposite leaflet. In contrast, p3 is surface bound with its N-terminal end tilted toward the bilayer interior. The deeper membrane insertion of p1 correlates with its behavior at full hydration: an enhanced ability to tilt, bury its histidines and C-terminus, induce membrane thinning and defects, and alter membrane conductance and viscoelastic properties. Furthermore, its pH-resiliency relates to the neutral state favored by H17. Overall, these results provide mechanistic insights into how differences in the histidine content and amphipathicity of peptides can elicit different directionality of membrane insertion and pH-dependent permeabilization. This work features complementary methods, including dye leakage assays, NMR-monitored titrations, X-ray and neutron diffraction, oriented CD, molecular dynamics, electrochemical impedance spectroscopy, surface plasmon resonance, and quartz crystal microbalance with dissipation.
- Published
- 2019
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35. Interactions of nuclear transport factors and surface-conjugated FG nucleoporins: Insights and limitations.
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Hayama R, Sorci M, Keating Iv JJ, Hecht LM, Plawsky JL, Belfort G, Chait BT, and Rout MP
- Subjects
- Active Transport, Cell Nucleus, Amino Acid Sequence, Mutation genetics, Protein Binding, Quartz Crystal Microbalance Techniques, beta Karyopherins metabolism, Cell Nucleus metabolism, Nuclear Pore Complex Proteins chemistry, Nuclear Pore Complex Proteins metabolism, Repetitive Sequences, Nucleic Acid
- Abstract
Protein-protein interactions are central to biological processes. In vitro methods to examine protein-protein interactions are generally categorized into two classes: in-solution and surface-based methods. Here, using the multivalent interactions between nucleocytoplasmic transport factors and intrinsically disordered FG repeat containing nuclear pore complex proteins as a model system, we examined the utility of three surface-based methods: atomic force microscopy, quartz crystal microbalance with dissipation, and surface plasmon resonance. Although results were comparable to those of previous reports, the apparent effect of mass transport limitations was demonstrated. Additional experiments with a loss-of-interaction FG repeat mutant variant demonstrated that the binding events that take place on surfaces can be unexpectedly complex, suggesting particular care must be exercised in interpretation of such data., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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36. Detection of amyloid β oligomers toward early diagnosis of Alzheimer's disease.
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Hwang SS, Chan H, Sorci M, Van Deventer J, Wittrup D, Belfort G, and Walt D
- Subjects
- Brain metabolism, Early Diagnosis, Enzyme-Linked Immunosorbent Assay, Humans, Limit of Detection, Quartz Crystal Microbalance Techniques, Alzheimer Disease diagnosis, Amyloid beta-Peptides analysis, Antibodies, Monoclonal, Humanized chemistry, Peptide Fragments analysis
- Abstract
Amyloid β (Aβ) peptide accumulation in the brain is considered to be one of the hallmarks of Alzheimer's disease. Here, we compare two analytical techniques for detecting neurotoxic Aβ
1-42 oligomers - Quartz Crystal Microbalance with Dissipation (QCM-D) and Single Molecule Array (Simoa). Both detection methods exploit a feature of the monoclonal antibody bapineuzumab, which targets N-terminal residues 1-5 of Aβ with high affinity and use it as both a capture and detection reagent. Assays developed with the two methods allow us to specifically recognize neurotoxic Aβ1-42 oligomers and higher aggregates such as fibrils but discriminate against Aβ1-42 monomer species. We find that for detection of Aβ1-42 oligomers, Simoa was roughly 500 times more sensitive than the QCM-D technique with limits of detection of 0.22 nM and 125 nM, respectively., (Copyright © 2018 Elsevier Inc. All rights reserved.)- Published
- 2019
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37. Argonaute 2 drives miR-145-5p-dependent gene expression program in breast cancer cells.
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Bellissimo T, Tito C, Ganci F, Sacconi A, Masciarelli S, Di Martino G, Porta N, Cirenza M, Sorci M, De Angelis L, Rosa P, Calogero A, Fatica A, Petrozza V, Fontemaggi G, Blandino G, and Fazi F
- Subjects
- A549 Cells, Breast Neoplasms pathology, Cell Cycle, Cell Movement, Eukaryotic Initiation Factors metabolism, Female, Humans, Kaplan-Meier Estimate, MCF-7 Cells, Polyribosomes metabolism, Protein Biosynthesis, Transfection, Argonaute Proteins genetics, Argonaute Proteins metabolism, Breast Neoplasms genetics, Breast Neoplasms metabolism, Gene Expression, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
To perform their regulatory functions, microRNAs (miRNAs) must assemble with any of the four mammalian Argonaute (Ago) family of proteins, Ago1-4, into an effector complex known as the RNA-induced silencing complex (RISC). While the mature miRNA guides the RISC complex to its target mRNA, the Ago protein represses mRNA translation. The specific roles of the various Ago members in mediating miRNAs activity, however, haven't been clearly established. In this study, we investigated the contribution of Ago2, the only human Ago protein endowed with nuclease activity, to the function of tumor-suppressor miR-145-5p in breast cancer (BC). We show that miR-145-5p and Ago2 protein are concomitantly downregulated in BC tissues and that restoration of miR-145-5p expression in BC cells leads to Ago2 protein induction through the loosening of Ago2 mRNA translational repression. Functionally, miR-145-5p exerts its inhibitory activity on cell migration only in presence of Ago2, while, upon Ago2 depletion, we observed increased miR-145/Ago1 complex and enhanced cell motility. Profiling by microarray of miR-145-5p target mRNAs, in BC cells depleted or not of Ago2, revealed that miR-145-5p drives Ago2-dependent and -independent activities. Our results highlight that the Ago2 protein in cancer cells strictly dictates miR-145-5p tumor suppressor activity.
- Published
- 2019
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38. METTL3 regulates WTAP protein homeostasis.
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Sorci M, Ianniello Z, Cruciani S, Larivera S, Ginistrelli LC, Capuano E, Marchioni M, Fazi F, and Fatica A
- Subjects
- Cell Cycle Proteins, Cell Line, Tumor, Humans, Leukemia, Myeloid, Acute metabolism, Leukemia, Myeloid, Acute pathology, Methyltransferases antagonists & inhibitors, Methyltransferases genetics, Nuclear Proteins genetics, Proteostasis, RNA Interference, RNA Splicing Factors, RNA, Small Interfering metabolism, Ribosomes metabolism, Methyltransferases metabolism, Nuclear Proteins metabolism
- Abstract
The Wilms tumor 1 (WT1)-associated protein (WTAP) is upregulated in many tumors, including, acute myeloid leukemia (AML), where it plays an oncogenic role by interacting with different proteins involved in RNA processing and cell proliferation. In addition, WTAP is also a regulator of the nuclear complex required for the deposition of N
6 -methyladenosine (m6A) into mRNAs, containing the METTL3 methyltransferase. However, it is not clear if WTAP may have m6A-independent regulatory functions that might contribute to its oncogenic role. Here, we show that both knockdown and overexpression of METTL3 protein results in WTAP protein upregulation, indicating that METTL3 levels are critical for WTAP protein homeostasis. However, we show that WTAP upregulation is not sufficient to promote cell proliferation in the absence of a functional METTL3. Therein, these data indicate that the reported oncogenic function of WTAP is strictly connected to a functional m6A methylation complex.- Published
- 2018
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39. Oriented chiral water wires in artificial transmembrane channels.
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Kocsis I, Sorci M, Vanselous H, Murail S, Sanders SE, Licsandru E, Legrand YM, van der Lee A, Baaden M, Petersen PB, Belfort G, and Barboiu M
- Abstract
Aquaporins (AQPs) feature highly selective water transport through cell membranes, where the dipolar orientation of structured water wires spanning the AQP pore is of considerable importance for the selective translocation of water over ions. We recently discovered that water permeability through artificial water channels formed by stacked imidazole I-quartet superstructures increases when the channel water molecules are highly organized. Correlating water structure with molecular transport is essential for understanding the underlying mechanisms of (fast) water translocation and channel selectivity. Chirality adds another factor enabling unique dipolar oriented water structures. We show that water molecules exhibit a dipolar oriented wire structure within chiral I-quartet water channels both in the solid state and embedded in supported lipid bilayer membranes (SLBs). X-ray single-crystal structures show that crystallographic water wires exhibit dipolar orientation, which is unique for chiral I-quartets. The integration of I-quartets into SLBs was monitored with a quartz crystal microbalance with dissipation, quantizing the amount of channel water molecules. Nonlinear sum-frequency generation vibrational spectroscopy demonstrates the first experimental observation of dipolar oriented water structures within artificial water channels inserted in bilayer membranes. Confirmation of the ordered confined water is obtained via molecular simulations, which provide quantitative measures of hydrogen bond strength, connectivity, and the stability of their dipolar alignment in a membrane environment. Together, uncovering the interplay between the dipolar aligned water structure and water transport through the self-assembled I-quartets is critical to understanding the behavior of natural membrane channels and will accelerate the systematic discovery for developing artificial water channels for water desalting.
- Published
- 2018
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40. Protein Binding Kinetics in Multimodal Systems: Implications for Protein Separations.
- Author
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Srinivasan K, Sorci M, Sejergaard L, Ranjan S, Belfort G, and Cramer SM
- Subjects
- Adsorption, Chymotrypsin chemistry, Chymotrypsin metabolism, Cytochromes c chemistry, Kinetics, Ligands, Models, Molecular, Molecular Structure, Photoelectron Spectroscopy, Protein Binding, Surface Properties, Chymotrypsin isolation & purification, Cytochromes c isolation & purification, Quartz Crystal Microbalance Techniques
- Abstract
In this work, quartz crystal microbalance with dissipation (QCM-D) was employed to study the kinetic processes involved in the interaction of proteins with self-assembled monolayers (SAMs) of multimodal (MM) ligands. SAMs were fabricated to mimic two chromatographic multimodal resins with varying accessibility of the aromatic moiety to provide a well-defined model system. Kinetic parameters were determined for two different proteins in the presence of the arginine and guanidine and a comparison was made with chromatographic retention data. The results indicated that the accessibility of the ligand's aromatic moiety can have an important impact on the kinetics and chromatographic retention behavior. Interestingly, arginine and guanidine had very different effects on the protein adsorption and desorption kinetics in these MM systems. For cytochrome C, arginine resulted in a significant decrease and increase in the adsorption and desorption rates, respectively, while guanidine produced a dramatic increase in the desorption rate, with minimal effect on the adsorption rate. In addition, at different concentrations of arginine, two distinct kinetic scenarios were observed. For α-chymotrypsin, the presence of 0.1 M guanidine in the aromatic exposed ligand system produced an increase in the adsorption rate and only a moderate increase in the desorption rate, which helped to explain the surprising increase in the chromatographic salt elution concentration. These results demonstrate that protein adsorption kinetics in the presence of different mobile phase modifiers and MM ligand chemistries can play an important role in contributing to selectivity in MM chromatography.
- Published
- 2018
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41. Eyes of Things.
- Author
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Deniz O, Vallez N, Espinosa-Aranda JL, Rico-Saavedra JM, Parra-Patino J, Bueno G, Moloney D, Dehghani A, Dunne A, Pagani A, Krauss S, Reiser R, Waeny M, Sorci M, Llewellynn T, Fedorczak C, Larmoire T, Herbst M, Seirafi A, and Seirafi K
- Abstract
Embedded systems control and monitor a great deal of our reality. While some "classic" features are intrinsically necessary, such as low power consumption, rugged operating ranges, fast response and low cost, these systems have evolved in the last few years to emphasize connectivity functions, thus contributing to the Internet of Things paradigm. A myriad of sensing/computing devices are being attached to everyday objects, each able to send and receive data and to act as a unique node in the Internet. Apart from the obvious necessity to process at least some data at the edge (to increase security and reduce power consumption and latency), a major breakthrough will arguably come when such devices are endowed with some level of autonomous "intelligence". Intelligent computing aims to solve problems for which no efficient exact algorithm can exist or for which we cannot conceive an exact algorithm. Central to such intelligence is Computer Vision (CV), i.e., extracting meaning from images and video. While not everything needs CV, visual information is the richest source of information about the real world: people, places and things. The possibilities of embedded CV are endless if we consider new applications and technologies, such as deep learning, drones, home robotics, intelligent surveillance, intelligent toys, wearable cameras, etc. This paper describes the Eyes of Things (EoT) platform, a versatile computer vision platform tackling those challenges and opportunities., Competing Interests: The authors declare no conflict of interest.
- Published
- 2017
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42. Effect of miR-204&211 and RUNX2 control on the fate of human mesenchymal stromal cells.
- Author
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Sacchetti B, Fatica A, Sorci M, Sorrentino A, Signore M, Cerio A, Felicetti F, Feo A, Pelosi E, Caré A, Pescarmona E, Gordeladze JO, and Valtieri M
- Abstract
MiR-204 and 211 enforced expression in murine mesenchymal stromal cells (MSCs) has been shown to induce adipogenesis and impair osteogenesis, through RUNX2 down-modulation. This mechanism has been suggested to play a role in osteoporosis associated with obesity. However, two further fundamental MSC functions, chondrogenesis and hematopoietic supporting activity, have not yet been explored. To this end, we transduced, by a lenti-viral vector, miR-204 and 211 in a model primary human MSC line, opportunely chosen among our MSC collection for displaying all properties of canonical bone marrow MSCs, except adipogenesis. Enforced expression of miR-204&211 in these cells, rescued adipogenesis, and inhibited osteogenesis, as previously reported in murine MSCs, but, surprisingly, also damaged cartilage formation and hematopoietic supporting activity, which were never explored before. RUNX2 has been previously indicated as the target of miR-204&211, whose down modulation is responsible for the switch from osteogenesis to adipogenesis. However, the additional disruption of chondrogenesis and hematopoietic supporting activity, which we report here, might depend on diverse miR-204&211 targets. To investigate this hypothesis, permanent RUNX2 knock-down was performed. Sh-RUNX2 fully reproduced the phenotypes induced by miR-204&211, confirming that RUNX2 down modulation is the major event leading to the reported functional modification on our MSCs. It seems thus apparent that RUNX2, a recognized master gene for osteogenesis, might rule all four MSC commitment and differentiation processes. Hence, the formerly reported role of miR204&211 and RUNX2 in osteoporosis and obesity, coupled with our novel observation showing inhibition of cartilage differentiation and hematopoietic support, strikingly resemble the clinical traits of metabolic syndrome, where osteoarthritis, osteoporosis, anaemia and obesity occur together. Our observations, corroborating and extending previous observations, suggest that miR-204&211-RUNX2 axis in human MSCs is possibly involved in the pathogenesis of this rapidly growing disease in industrialized countries, for possible therapeutic intervention to regenerate former homeostasis., (© B. Sacchetti et al., published by EDP Sciences, 2017.)
- Published
- 2017
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43. The miR-223 host non-coding transcript linc-223 induces IRF4 expression in acute myeloid leukemia by acting as a competing endogenous RNA.
- Author
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Mangiavacchi A, Sorci M, Masciarelli S, Larivera S, Legnini I, Iosue I, Bozzoni I, Fazi F, and Fatica A
- Subjects
- Adult, Aged, Cell Differentiation genetics, Female, Gene Expression Profiling methods, HL-60 Cells, Humans, Interferon Regulatory Factors metabolism, K562 Cells, Leukemia, Myeloid, Acute metabolism, Leukemia, Myeloid, Acute pathology, Male, MicroRNAs metabolism, Middle Aged, Young Adult, Gene Expression Regulation, Leukemic, Interferon Regulatory Factors genetics, Leukemia, Myeloid, Acute genetics, MicroRNAs genetics, RNA, Long Noncoding genetics
- Abstract
Alterations in genetic programs required for terminal myeloid differentiation and aberrant proliferation characterize acute myeloid leukemia (AML) cells. Here, we identify the host transcript of miR-223, linc-223, as a novel functional long non-coding RNA (lncRNA) in AML. We show that from the primary nuclear transcript, the alternative production of miR-223 and linc-223 is finely regulated during monocytic differentiation. Moreover, linc-223 expression inhibits cell cycle progression and promotes monocytic differentiation of AML cells. We also demonstrate that endogenous linc-223 localizes in the cytoplasm and acts as a competing endogenous RNA for miR-125-5p, an oncogenic microRNA in leukemia. In particular, we show that linc-223 directly binds to miR-125-5p and that its knockdown increases the repressing activity of miR-125-5p resulting in the downregulation of its target interferon regulatory factor 4 (IRF4), which it was previously shown to inhibit the oncogenic activity of miR-125-5p in vivo. Furthermore, data from primary AML samples show significant downregulation of linc-223 in different AML subtypes. Therein, these findings indicate that the newly identified lncRNA linc-223 may have an important role in myeloid differentiation and leukemogenesis, at least in part, by cross-talking with IRF4 mRNA.
- Published
- 2016
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44. A2T and A2V Aβ peptides exhibit different aggregation kinetics, primary nucleation, morphology, structure, and LTP inhibition.
- Author
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Murray B, Sorci M, Rosenthal J, Lippens J, Isaacson D, Das P, Fabris D, Li S, and Belfort G
- Subjects
- Amino Acid Substitution, Amyloid beta-Peptides pharmacology, Animals, Hippocampus drug effects, Hippocampus physiology, Humans, Hydrophobic and Hydrophilic Interactions, Kinetics, Long-Term Potentiation physiology, Mice, Microscopy, Atomic Force, Microtomy, Mutation, Peptide Fragments pharmacology, Protein Aggregates, Protein Binding, Protein Folding, Protein Multimerization, Protein Stability, Alanine chemistry, Amyloid beta-Peptides chemistry, Long-Term Potentiation drug effects, Peptide Fragments chemistry, Threonine chemistry, Valine chemistry
- Abstract
The histopathological hallmark of Alzheimer's disease (AD) is the aggregation and accumulation of the amyloid beta peptide (Aβ) into misfolded oligomers and fibrils. Here we examine the biophysical properties of a protective Aβ variant against AD, A2T, and a causative mutation, A2T, along with the wild type (WT) peptide. The main finding here is that the A2V native monomer is more stable than both A2T and WT, and this manifests itself in different biophysical behaviors: the kinetics of aggregation, the initial monomer conversion to an aggregation prone state (primary nucleation), the abundances of oligomers, and extended conformations. Aggregation reaction modeling of the conversion kinetics from native monomers to fibrils predicts the enhanced stability of the A2V monomer, while ion mobility spectrometry-mass spectrometry measures this directly confirming earlier predictions. Additionally, unique morphologies of the A2T aggregates are observed using atomic force microscopy, providing a basis for the reduction in long term potentiation inhibition of hippocampal cells for A2T compared with A2V and the wild type (WT) peptide. The stability difference of the A2V monomer and the difference in aggregate morphology for A2T (both compared with WT) are offered as alternate explanations for their pathological effects., (© 2016 Wiley Periodicals, Inc.)
- Published
- 2016
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45. Erythematous patches and pretibial ulcers: an uncommon presentation of cutaneous sarcoidosis.
- Author
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Barisani A, Negosanti M, La Placa M, Infusino SD, Misciali C, Sorci M, and Patrizi A
- Subjects
- Diagnosis, Differential, Erythema therapy, Female, Humans, Leg Ulcer therapy, Middle Aged, Sarcoidosis therapy, Treatment Outcome, Erythema diagnosis, Erythema etiology, Leg Ulcer diagnosis, Leg Ulcer etiology, Sarcoidosis complications, Sarcoidosis diagnosis
- Published
- 2016
- Full Text
- View/download PDF
46. Facial Image Analysis for Fully Automatic Prediction of Difficult Endotracheal Intubation.
- Author
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Cuendet GL, Schoettker P, Yüce A, Sorci M, Gao H, Perruchoud C, and Thiran JP
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, ROC Curve, Young Adult, Face anatomy & histology, Image Processing, Computer-Assisted methods, Intubation, Intratracheal methods, Pattern Recognition, Automated methods
- Abstract
Goal: Difficult tracheal intubation is a major cause of anesthesia-related injuries with potential life threatening complications. Detection and anticipation of difficult airway in the preoperative period is, thus, crucial for the patients' safety. We propose an automatic face-analysis approach to detect morphological traits related to difficult intubation and improve its prediction., Methods: For this purpose, we have collected a database of 970 patients including photos, videos, and ground truth data. Specific statistical face models have been learned using the faces in our database providing an automated parametrization of the facial morphology. The most discriminative morphological features are selected through the importance ranking provided by the random forest algorithm. The random forest approach has also been used to train a classifier on these selected features. We compare a threshold tuning method based on class prior with two methods, which learn an optimal threshold on a training set for tackling the inherent imbalanced nature of the database., Results: Our fully automated method achieves an AUC of 81.0% in a simplified experimental setup, where only easy and difficult patients are considered. A further validation on the entire database has proven that our method is applicable for real-world difficult intubation prediction, with AUC = 77.9%., Conclusion: The system performance is in line with the state-of-the-art medical diagnosis, based on ratings provided by trained anesthesiologists, whose assessment is guided by an extensive set of criteria., Significance: We present the first completely automatic and noninvasive difficult intubation detection system that is suitable for use in clinical settings.
- Published
- 2016
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47. Accelerated insulin aggregation under alternating current electric fields: Relevance to amyloid kinetics.
- Author
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Zheng Z, Jing B, Sorci M, Belfort G, and Zhu Y
- Abstract
The time-dependent nucleation phase is critical to amyloid fibrillation and related to many pathologies, in which the conversion from natively folded amyloidogenic proteins to oligomers via nucleation is often hypothesized as a possible underlying mechanism. In this work, non-uniform AC-electric fields across two asymmetric electrodes were explored to control and examine the aggregation of insulin, a model amyloid protein, in aqueous buffer solution at constant temperature (20 °C) by fluorescence correlation spectroscopy and fluorescence microscopy. Insulin was rapidly concentrated in a strong AC-field by imposed AC-electroosmosis flow over an optimal frequency range of 0.5-2 kHz. In the presence of an AC-field, direct fibrillation from insulin monomers without the formation of oligomer precursors was observed. Once the insulin concentration had nearly doubled its initial concentration, insulin aggregates were observed in solution. The measured lag time for the onset of insulin aggregation, determined from the abrupt reduction in insulin concentration in solution, was significantly shortened from months or years in the absence of AC-fields to 1 min-3 h under AC-fields. The ability of external fields to alter amyloid nucleation kinetics provides insights into the onset of amyloid fibrillation.
- Published
- 2015
- Full Text
- View/download PDF
48. "Cyrano nose" associated with hepatic hemangiomas successfully treated with propranolol.
- Author
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Vergine G, Sorci M, Rosafio C, Bigucci B, Filippini B, and Ancora G
- Subjects
- Female, Follow-Up Studies, Hemangioma complications, Hemangioma diagnosis, Humans, Infant, Liver Neoplasms complications, Liver Neoplasms diagnosis, Nose Neoplasms complications, Nose Neoplasms diagnosis, Treatment Outcome, Adrenergic beta-Antagonists therapeutic use, Hemangioma drug therapy, Liver Neoplasms drug therapy, Nose Neoplasms drug therapy, Propranolol therapeutic use
- Abstract
Hemangioma of the nasal tip is commonly described as "Cyrano nose" and his treatment is extremely difficult because of its location and possible severe aesthetic complications like definitive nasal deformation. We describe a patient who presented at two months of age with a "Cyrano nose" associated with multiple hepatic and cutaneous hemangiomas, which completely resolved after therapy with propranolol. Treatment was well tolerated and aesthetic result was excellent.
- Published
- 2015
49. Chimera-induced folding: implications for amyloidosis.
- Author
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Takor GA, Higashiya S, Sorci M, Topilina NI, Belfort G, and Welch JT
- Subjects
- Amyloid metabolism, Humans, Recombinant Fusion Proteins metabolism, Amyloid chemistry, Amyloidosis, Protein Folding, Recombinant Fusion Proteins chemistry
- Abstract
The discoveries that non-native proteins have a role in amyloidosis and that multiple protein misfolding diseases can occur concurrently suggest that cross-seeding of amyloidogenic proteins may be central to misfolding. To study this process, a synthetic chimeric amyloidogenic protein (YEHK21-YE8) composed of two components, one that readily folds to form fibrils (YEHK21) and one that does not (YE8), was designed. Secondary structural conformational changes during YEHK21-YE8 aggregation demonstrate that, under the appropriate conditions, YEHK21 is able to induce fibril formation of YE8. The unambiguous demonstration of the induction of folding and fibrillation within a single molecule illuminates the factors controlling this process and hence suggests the importance of those factors in amyloidogenic diseases.
- Published
- 2014
- Full Text
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50. Egg white varnishes on ancient paintings: a molecular connection to amyloid proteins.
- Author
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Imbrogno J, Nayak A, Sorci M, and Belfort G
- Subjects
- Diffusion, Hydrophobic and Hydrophilic Interactions, Ovalbumin chemistry, Oxygen chemistry, Oxygen metabolism, Protein Structure, Secondary, Spectroscopy, Fourier Transform Infrared, Amyloidogenic Proteins chemistry, Egg White chemistry, Paintings
- Abstract
For about 400 years, egg white was used to coat and protect paintings without detailed understanding of its molecular properties. A molecular basis is provided for its advantageous properties and one of its protective properties is demonstrated with oxygen transport behavior. Compared to the native secondary structure of ovalbumin in solution of circa 33% α-helix and β-sheet, attenuated total reflection-FTIR (ATR-FTIR) spectra showed a 73% decrease of α-helix content and a 44% increase of β-sheet content over eight days. The data suggest that the final coating of dissolved ovalbumin from egg white after long exposure to air, which is hydrophobic, comprises mostly β-sheet content (ca. 50%), which is predicted to be the lowest-energy structure of proteins and close to that found in amyloid fibrils. Coating a synthetic polytetrafluoroethylene membrane with multiple layers of egg white decreased oxygen diffusion by 50% per layer with a total decrease of almost 100% for four layers., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
- Full Text
- View/download PDF
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