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Estuaries include some of the most productive yet anthropogenically impacted marine ecosystems on the planet, and provide critical habitat to many ecologically and economically important marine species. In order to elucidate ecological function in estuaries, we must understand what factors drive community dynamics. Delaware Bay is the third largest estuary in the United States and hosts over 200 species of migrant and resident fishes and invertebrates. The Delaware Division of Fish and Wildlife has conducted two long-term trawl surveys at monthly intervals in Delaware Bay since 1966. The two surveys collect data on environmental conditions, species composition, and number of fishes and macroinvertebrates across different size classes and life histories. Using a suite of multivariate approaches including hierarchical cluster analysis, canonical correlation analysis, and permutational multivariate analysis of variance, we characterized the fish and macroinvertebrate community in Delaware Bay and found that community composition and environmental conditions varied across spatial and seasonal scales. We identified four distinct biogeographic regions, based on environmental conditions and community composition, which were consistent across surveys. We found that the community was driven primarily by gradients in temperature and salinity and that abundant, frequently occurring species in the Bay have well-defined environmental associations. Our work represents the first attempt to use an existing historical survey to better understand how environmental parameters influence diversity and distribution of macrofauna within Delaware Bay, providing insight into how abiotic variables, influenced by climate, may impact the Delaware Bay ecosystem and similar estuarine ecosystems worldwide.

Plant species diversity may be considerably underestimated, especially in evolutionarily complex genera and in diversity hotspots that have enabled long‐term species persistence and diversification, such as the Balkan Peninsula. Here, we address the topic of underexplored plant diversity and underlying evolutionary and biogeographic processes by investigating the hygrophytic mountain species complex of Cardamine acris s.l. distributed in the Balkans (three subspecies within C. acris) and northwestern Anatolia (C. anatolica). We performed a series of phylogenetic and phylogeographic analyses based on restriction‐site associated DNA sequencing (RADseq) and target enrichment (Hyb‐Seq) data in combination with habitat suitability modelling. We found C. anatolica as a clade nested within the Balkan C. acris, probably resulting from a founder event, and uncovered three allopatric cryptic lineages within C. acris subsp. acris, allowing us to recognise a total of six entities in this complex. We observed the deepest genetic split within C. acris subsp. acris in the western Balkans, which was at odds with taxonomy and showed no distribution gap. We inferred vicariance as the most likely process for population divergence in the Balkans, accompanied by gene flow between the recognised entities, which was consistent with the modelled habitat suitability dynamics. Furthermore, we discovered several polyploid populations in C. acris, representing both pure intra‐ and inter‐lineage hybrid polyploids, but detected only minor traces of hybridization with related congeners. Overall, our results illustrate that diverse evolutionary processes may influence the history of mountain plant species in the Balkan Peninsula, including vicariance, reticulation, polyploidization and cryptic diversification. [ABSTRACT FROM AUTHOR]

Haemoglobin is a key molecule for oxygen transport in vertebrates. It exhibits remarkable gene diversity in teleost fishes, reflecting adaptation to various aquatic environments. In this study, we present the dynamic evolution of haemoglobin subunit genes based on a comparison of high‐quality genome assemblies of 24 vertebrate species, including 17 teleosts (of which six are cichlids). Our findings indicate that teleost genomes contain a range of haemoglobin genes, from as few as five in fugu to as many as 43 in salmon, with the latter being the largest repertoire found in vertebrates. We find evidence that the teleost ancestor had at least four Hbα and three or four Hbβ subunit genes, and that the current gene diversity emerged during teleost radiation, driven primarily by (tandem) gene duplications, genome compaction, and rearrangement dynamics. We provide insights into the genomic organisation of haemoglobin clusters in different teleost species. We further show that the evolution of paralogous rhbdf1 genes flanking both teleost clusters (LA and MN) supports the hypothesis for the origin of the LA cluster by rearrangement within teleosts, rather than by the teleost specific whole‐genome duplication. We specifically focus on cichlid fishes, where adaptation to low oxygen environment plays role in species diversification. Our analysis of six cichlid genomes, including Pungu maclareni from the Barombi Mbo crater lake, for which we sequenced a representative genome, reveals 18–32 copies of the Hb genes, and elevated rates of non‐synonymous substitutions compared to other teleosts. Overall, this work facilitates a deeper understanding of how haemoglobin genes contribute to the adaptive potential of teleosts. [ABSTRACT FROM AUTHOR]

The spider genus Dysdera has undergone a remarkable diversification in the oceanic archipelago of the Canary Islands, with ~60 endemic species having originated during the 20 million years since the origin of the archipelago. This evolutionary radiation has been accompanied by substantial dietary shifts, often characterised by phenotypic modifications encompassing morphological, metabolic and behavioural changes. Hence, these endemic spiders represent an excellent model for understanding the evolutionary drivers and to pinpoint the genomic determinants underlying adaptive radiations. Recently, we achieved the first chromosome‐level genome assembly of one of the endemic species, D. silvatica, providing a high‐quality reference sequence for evolutionary genomics studies. Here, we conducted a low coverage‐based resequencing study of a natural population of D. silvatica from La Gomera island. Taking advantage of the new high‐quality genome, we characterised genome‐wide levels of nucleotide polymorphism, divergence and linkage disequilibrium, and inferred the demographic history of this population. We also performed comprehensive genome‐wide scans for recent positive selection. Our findings uncovered exceptionally high levels of nucleotide diversity and recombination in this geographically restricted endemic species, indicative of large historical effective population sizes. We also identified several candidate genomic regions that are potentially under positive selection, highlighting relevant biological processes, such as vision and nitrogen extraction as potential adaptation targets. These processes may ultimately drive species diversification in this genus. This pioneering study of spiders that are endemic to an oceanic archipelago lays the groundwork for broader population genomics analyses aimed at understanding the genetic mechanisms driving adaptive radiation in island ecosystems. [ABSTRACT FROM AUTHOR]

We conducted a study to investigate the potential effects of nutrients released from a fish farm, which fell within the typical range found in oligotrophic offshore waters of the Aegean Sea, on phytoplankton growth. We designed an in situ bioassay experiment at a fish farm and incubated natural phytoplankton assemblages inside dialysis membrane bags for six days. Changes in phytoplankton growth in samples of ambient seawater collected throughout the experiment served as controls and were considered indicative of the net population change rates. Half of the bags were filled with seawater filtered through a 150-µm mesh, while the other half contained unfiltered seawater. The growth rates, estimated based on chlorophyll a concentrations and phytoplankton cell numbers inside the filtered and unfiltered bags, showed no significant differences. While no detectable net phytoplankton growth occurred in the ambient seawater, there was an exponential increase in chlorophyll a content and cell numbers within the bags. Moreover, the species richness within the bags gradually declined throughout the experiment. The findings of the study confirm that continuous nutrient releases from fish farms can promote high population growth rates in oligotrophic environments, provided that phytoplankton losses due to grazing, advection, and sinking are minimized or eliminated. [ABSTRACT FROM AUTHOR]

AbstractThis study investigated the diversity of endophytic fungi isolated from the brown seaweed, Sargassum thunbergia, collected from six coastal regions in Korea: Gangneung, Pohang, Buan, Taean, Tongyeong and Yeosu. A total of 154 fungal strains were isolated using ITS rDNA sequence analysis, resulting in 84 species across 43 genera. Species diversity, assessed based on the Shannon index, was highest in Tongyeong (H′=3.273), followed by Pohang (H′=3.209), Buan (H′=2.691), Yeosu (H′=2.649), Gangneung (H′=2.342), and Taean (H′=2.025). Principal Coordinates Analysis (PCoA) revealed that water temperature and dissolved oxygen are the primary environmental factors influencing the regional variation in fungal community structure. This study underscores the significance of environmental conditions in shaping the diversity and community composition of endophytic fungi in S. thunbergii. [ABSTRACT FROM AUTHOR]

Fungi are arguably the most diverse eukaryotic kingdom of organisms in terms of number of estimated species, trophic and life history strategies, and their functions in ecosystems. However, our knowledge of fungi is limited due to a distributional bias; the vast majority of available data on fungi have been compiled from non-tropical regions. Far less is known about fungi from tropical regions, with the bulk of these data being temporally limited surveys for fungal species diversity. Long-term studies (LTS), or repeated sampling from the same region over extended periods, are necessary to fully capture the extent of species diversity in a region, but LTS of fungi from tropical regions are almost non-existent. In this paper, we discuss the contributions of LTS of fungi in tropical regions to alpha diversity, ecological and functional diversity, biogeography, hypothesis testing, and conservation—with an emphasis on an ongoing tropical LTS in the Pakaraima Mountains of Guyana. We show how these contributions refine our understanding of Fungi. We also show that public data repositories such as NCBI, IUCN, and iNaturalist contain less information on tropical fungi compared to non-tropical fungi, and that these discrepancies are more pronounced in fungi than in plants and animals. [ABSTRACT FROM AUTHOR]

Panax (Araliaceae) is a small genus containing several well known medicinally important species. It has a disjunct distribution between Eastern Asia and Eastern North America, with most species from eastern Asia, especially the Himalayan‐Hengduan Mountains (HHM). This study used the genomic target enrichment method to obtain 358 nuclear ortholog loci and complete plastome sequences from 59 accessions representing all 18 species of the genus. Divergence time estimation and biogeographic analyses suggest that Panax was probably widely distributed from North America to Asia during the middle Eocene. During the late Eocene to Oligocene Panax may have experienced extensive extinctions during global climate cooling. It survived and diverged early in the mountains of Southwest China and tropical Indochina, where some taxa migrated northwestward to the HHM, eastward to central and eastern China, and then onward toward Japan and North America. Gene flow is identified as the main contributor to phylogenetic discordance (33.46%) within Panax. We hypothesize that the common ancestors of the medicinally important P. ginseng + P. japonicus + P. quinquefolius clade had experienced allopolyploidization, which increased adaptability to cooler and drier environments. During the middle to late Miocene, several dispersals occurred from the region of the HHM to contiguous areas, suggesting that HHM acted as a refugium and also served as a secondary diversification center for Panax. Our findings highlight that the interplay of orographic uplift and climatic changes in the HHM greatly contributed to the species diversity of Panax. [ABSTRACT FROM AUTHOR]

Large‐scale declines in insect abundances and richness due to climate and land‐use change have been well documented during the past years. These changes are accompanied by shifts in insect phenology towards earlier appearance in spring and prolonged activity periods in late summer and autumn. The magnitude of these responses to climate change might be masked by intra‐ and inter‐specific variability in phenology and trait expression. Here, we used a large data set of museum records of butterflies from the northern Austrian Alps (380 m to >3000 m asl) and ask to which degree does intra‐ and inter‐specific variability in spring and autumn activity and in the numbers of generations affect the temporal trends in phenology during the last 30 years? For the 17 most abundant species, we found phenological variability to strongly differ among species, local habitats and study years. Ubiquitous mobile species were significantly more variable than habitat specialist and sedentary species. Intra‐specific variability was highest in ubiquitous habitat generalist species and increased during the study period. As consequence, seasonal appearance and composition of local butterfly communities are now less predictable than decades ago. It remains unclear whether this trend causes a rewiring of pollinator food webs. [ABSTRACT FROM AUTHOR]

Agricultural intensification is driving declines in pollinator diversity and the degradation of pollination services worldwide. Organic management, which prohibits the use of synthetic inputs, has considerable potential for combatting these declines by enhancing biodiversity in agricultural landscapes. However, the efficacy of organic farming for promoting pollinator diversity has recently been questioned. We conducted a meta‐analysis to determine the effect of organic management on pollinator species richness and abundance. We compiled 42 studies across four continents and calculated a Hedges' g effect size for each of 76 species richness and 57 abundance observations. We then estimated average effect sizes overall and across five moderators. Species richness and abundance of pollinating insects tended to be higher in organic farms than conventional ones, with average effect sizes of 0.68 and 0.74, respectively. Landscape context, crop type, pollinator group, sampling location, and sampling method were factors impacting the response of pollinator diversity/abundance to organic farming. We found benefits for pollinator diversity from organic farming in all landscape types, with the strongest response in simple compared with more complex landscapes. Pollinator diversity benefited the most in habitats within organic cereal systems and the least in organic pastures. Among pollinator groups, bumblebee diversity benefitted the most, while moths and hoverflies showed positive but non‐significant responses. Higher pollinator diversity/abundance was detected in organic farms at various sampling locations. Transect sampling showed the greatest diversity gains among sampling methods. Synthesis and applications. Our results affirm that organic farming has positive effects for pollinator species richness and abundance, but benefits are variable and not guaranteed. We recommend that future studies adopt a standard sampling protocol and cover a larger geographic range to understand the global potential of organic farming to promote pollinator biodiversity. Efforts to increase pollinator abundance and diversity through organic farming should focus on organic systems involving cereal phases, especially within simple landscapes, for the most positive outcomes. However, due to high variability in pollinator responses alongside the challenges to achieve economic profitability from organic farming, crafting organic farming systems to specific farm‐scale opportunities and needs may be necessary. [ABSTRACT FROM AUTHOR]

ABSTRACT Accurately assessing primate diets is important in studies of behavioral ecology and evolution. While previous research has compared sampling methods (scan, focal), we examined how sampling schedule influences accuracy of dietary measures. We define sampling schedule as the combined distribution (random vs. consecutive) and frequency of sampling days within a given month. Under field conditions, time may be required to locate a study group, and we therefore also subtracted 1, 2, or 3 h from the beginning of all non‐consecutive days in each sampling schedule to mimic observation time lost to search. From a dense (near daily) 5‐year record of feeding behavior derived from focal animal follows of adult females in five wild blue monkey (Cercopithecus mitis) groups, we created data subsets matching various sampling schedules, and compared monthly dietary measures calculated from each subset to those based on the full data set. These measures included (1) the proportion of observation time feeding on fruit, (2) diet composition (three top‐ranked food items), (3) species richness of plant diet, (4) Shannon–Wiener diversity index based on plant species, and (5) Holmes–Pitelka index expressing dietary overlap with the previous month. We used generalized linear mixed models to assess how frequency and sampling type (a combination of distribution and hours lost) relate to a subset's deviation from the full data set, where a smaller deviation (or higher chance of matching, for diet composition) implies greater accuracy. For all dietary measures, increasing observation frequency increased accuracy. The response to distribution varied among measures, but sampling types generally differed more at lower frequencies. Deviation varied widely within and between dietary measures, and some sampling schedules resulted in values with large percentage differences from the “full” data. Accordingly, when designing and comparing studies, researchers should consider how sampling schedules may influence the accuracy of the dietary measures of interest. [ABSTRACT FROM AUTHOR]

Premise Methods Results Conclusions Ferns and lycophytes, the two spore‐bearing lineages of vascular plants, share a unique life cycle, and because of several morpho‐ecophysiological similarities, are usually investigated as a unit, but they may have distinct ecological and environmental responses. Understanding the diversity and distribution patterns of ferns and lycophytes separately is essential for designing effective conservation strategies.We assessed species richness and range sizes using range–diversity analyses and investigated environmental (climatic, edaphic) and ecological (endemism, habit diversity, specialization) predictors of these range and richness metrics using generalized linear models.The central region of the Atlantic Forest primarily contained areas with fern and lycophyte species with high richness and small ranges; the northern and southern extremes of the forest had species with low richness and larger ranges. Fern richness was associated with a combination of environmental and ecological variables; lycophyte richness was associated only with ecological variables. Range sizes were positively related to habit diversity for both ferns and lycophytes, but the effect of environmental variables differed between the two lineages. Critical areas were primarily not within protected areas.Fern range sizes and richness were influenced by a combination of ecological and environmental factors such as temperature, precipitation, and soil variables; only ecological variables influenced lycophyte richness and range sizes. The effects of these factors must be considered separately for the two lineages due to their different responses to stressors. Conservation efforts should increase in the species‐rich–low‐range areas that are outside protected areas to protect these low‐range species. [ABSTRACT FROM AUTHOR]

Accurately investigating the composition of zooplankton species is crucial for monitoring changes in marine ecosystems and assessing biodiversity. In this study, we utilized bulk DNA and environmental DNA metabarcoding in the Ulleung Basin, known for its high zooplankton species diversity among the seas surrounding the Korean Peninsula. Genomic DNA extracted from samples collected during three summer seasons in the survey area was analyzed using high-throughput sequencing of the cytochrome c oxidase I barcode region. We identified 350 species, which were three to six times more than those identified by traditional morphological methods. Furthermore, we observed significant differences in species composition and diversity between bulk DNA and eDNA samples. Notably, eDNA metabarcoding effectively detected species with high swimming ability and those that were difficult to capture using traditional sampling methods. This study underscores the significant impact of sampling methods on research outcomes in zooplankton species diversity studies and highlights the importance of integrating different sampling techniques. Specifically, it suggests the need for the active adoption of non-invasive methods, such as eDNA metabarcoding, for the comprehensive monitoring of diverse biological groups in marine ecosystems. [ABSTRACT FROM AUTHOR]

The three programs that make up the Immune Mechanisms of Protection Against Mycobacterium tuberculosis Centers (IMPAc-TB) had to prioritize and select strains to be leveraged for this work. The CASCADE team based at Seattle Children's Research Institute are leveraging M.tb H37Rv, M.tb CDC1551, and M.tb SA161. The HI-IMPACT team based at Harvard T.H. Chan School of Public Health, Boston, have selected M.tb Erdman as well as a novel clinical isolate recently characterized during a longitudinal study in Peru. The PHOENIX team also based at Seattle Children's Research Institute have selected M.tb HN878 and M.tb Erdman as their isolates of choice. Here, we describe original source isolation, genomic references, key virulence characteristics, and relevant tools that make these isolates attractive for use. The global context for M.tb lineage 2 and 4 selection is reviewed including what is known about their relative abundance and acquisition of drug resistance. Host–pathogen interactions seem driven by genomic differences on each side, and these play an important role in pathogenesis and immunity. The few M.tb strains chosen for this work do not reflect the vast genomic diversity within this species. They do, however, provide specific virulence, pathology, and growth kinetics of interest to the consortium. The strains selected should not be considered as "representative" of the growing available array of M.tb isolates, but rather tools that are being used to address key outstanding questions in the field. [ABSTRACT FROM AUTHOR]

Abandoned and even active limestone quarries (excavation sites) can represent important secondary habitats for many species, including wild bees, associated with dry grasslands, which are threatened biodiversity hotspots in Europe. However, is not well understood how interactions between local habitat and landscape characteristics influence the value of limestone quarries for wild bees and how this could guide conservation schemes. We studied how wild bee communities in limestone quarries are affected by landscape variables (connectivity to neighbouring dry grasslands, landscape diversity), local quarry characteristics (area, age, woody vegetation cover, flowering plant species) and their interactions. We surveyed bee communities during 208 transects in 19 quarries in southern Lower Saxony, Germany. In total, we recorded 114 bee species (2360 individuals), including 35 endangered species. High flowering plant species richness positively affected bee abundance and richness. Large quarry area was important for determining the presence of endangered bee species. High levels of woody vegetation cover had a negative effect on bee abundance and richness. Bee abundance and richness can increase with quarry age, but only at sites with moderate woody vegetation cover. We found potentially positive interactions between quarry age and landscape diversity and/or habitat connectivity to neighbouring dry grasslands. In particular, high habitat connectivity ensured stable richness of endangered species in old quarries. Synthesis and applications. Observed negative effects of high woody vegetation cover on bee communities highlight the importance of local management to reduce shrub encroachment and reset successional processes in limestone quarries. Local management is particularly important in old quarries of great ecological value, where the adverse impact of high woody vegetation cover on wild bees appears to be most severe. Large and old quarries with high connectivity to neighbouring dry grasslands are especially valuable for endangered bee species. Therefore, landscape‐scale restoration and conservation of dry grasslands is the most promising approach to promote endangered bee species through enhanced habitat connectivity. [ABSTRACT FROM AUTHOR]

ABSTRACT Aim Location Taxon Methods Results Main Conclusions Australia's distinct geological history provides key insights into the diversity of its flora. While previous studies have predominantly focused on climate as the main driver of species richness, growing evidence suggests that geological factors also play an important role. This study aims to investigate the influence of Cenozoic volcanic lithologies on terrestrial vascular plant diversity in eastern Australia, disentangling the relative contributions of climate and geology to biodiversity patterns.Eastern Australia.Terrestrial vascular plants.We assessed the patterns of species richness in this region by examining whether sites with Cenozoic volcanic lithologies harbour greater vascular plant diversity, using a permutational multivariate analysis of variance (PERMANOVA). We then used a supervised machine learning algorithm (decision trees) coupled with partial canonical correspondence analysis (CCA) to discriminate the environmental variables influencing species richness and site composition in 230 sites in Queensland, New South Wales, Victoria and Tasmania.Soil profile variability and terrain ruggedness, influenced by underlying volcanic lithologies, emerged as primary predictors of species richness. We found species composition, indicative of distinct ecological communities, showed greater similarity within lithological types and varied significantly across volcanic complexes at different latitudes. Notably, areas of higher species richness corresponded with a greater diversity of stratigraphic units within protected zones.Our study reveals a significant imprint of Cenozoic volcanic activity on present‐day plant species richness and distribution in eastern Australia. We show that geological features, particularly lithology and site complexity, play a crucial role in shaping species richness beyond previously recognised climatic factors. These findings highlight the importance of integrating geological and edaphic factors into conservation strategies, thereby broadening our understanding of ecological dynamics, and guiding more effective biodiversity conservation. [ABSTRACT FROM AUTHOR]

ABSTRACT Aim Location Taxon Methods Results Main Conclusion To examine the species richness, distribution and macroecological patterns of elasmobranch assemblages across a broad latitudinal gradient in the Eastern Pacific Ocean (EPO).The study area encompasses the Pacific coast of the American continent, spanning from 65°N to 60°S, and extending from the coastline to approximately 1000 km offshore, encompassing the oceanic archipelagos.Elasmobranchs.Utilising the established distribution ranges of 190 elasmobranch species (comprising 89 sharks and 101 rays), we assessed the richness and spatial distribution of these species across the EPO. Subsequently, three macroecological patterns were scrutinised: Rapoport's rule, the Mid Domain Effect with its association to Mean Sea Surface Temperature, and the correlation between body size and latitudinal distribution.The analysis of species richness along latitudinal gradients unveiled a bimodal pattern, reaching peaks between 30° to 20°N and 10°N to 5°S. A decline in species richness was observed from tropical to polar regions. Contrary to Rapoport's Rule, Stevens' and midpoint methods demonstrated higher geographic range values at lower latitudes, diminishing towards higher latitudes. Additionally, the mid‐domain effect model exhibited a robust correlation with the mean sea surface temperature. Exploring the interspecific relationship between body size and extent of occurrence, it was found that 29 out of 190 species are more susceptible to extinction.Marine elasmobranchs of the EPO defy conventional latitudinal richness patterns and deviate from Rapoport's rule. Furthermore, our findings indicate a robust correlation between observed richness and both sea surface temperature and environmental heterogeneity. The proportion of species vulnerable to human or stochastic impacts potentially leading to extirpation in relation to their geographic range was low across the majority of examined provinces. [ABSTRACT FROM AUTHOR]

Agricultural intensification has led to the loss of most natural wetlands from human‐dominated landscapes but, in recent decades, wetland restoration has gained traction worldwide. Restoration of suitable habitat conditions is hampered by nutrient residues from decades of high‐input farming, by continued input of nutrients from surrounding farmland and by incomplete restoration of natural hydrology. We assessed the effect of wetland restoration and disturbance (grazing) on vascular plant and bryophyte diversity in restored wetlands in Denmark at plot and landscape scales. Compared to near‐natural wetlands, we found a lower species richness and community uniqueness in restored wetlands, but we also found that grazing had a positive effect on vascular plant richness in restored wetlands. The size of the local species pool, presence of near‐natural habitat prior to restoration and near‐natural restored hydrology all had positive effects on plant diversity, whereas high soil iron and nitrogen had negative effects. Synthesis and applications: Restoration of plant diversity in wetlands is challenging, but our results point to potential remedies: plan restoration areas near colonisation sources of the target biota, restore hydrology to near‐natural conditions, discontinue nutrient loads from surrounding arable land and restore near‐natural grazing regimes. Bryophytes may be particularly useful as indicators for successful restoration of wetlands. [ABSTRACT FROM AUTHOR]

Myxomycetes play crucial ecological roles, yet their species diversity, distribution, and taxonomic relationships remain poorly understood. In this study, we examined 104 specimens from 19 provinces in China. Through morphological analysis, we identified a group of species with reduced lime formation, a feature typically associated with the Physaraceae, but with key morphological similarities to the Diderma. A comprehensive phylogenetic analysis was conducted using three genes (nSSU, EF-1α, and COI), resulting in a dataset of 452 sequences from 116 species. Notably, we identified a distinct clade within Didymiaceae containing species with fewer lime knots, a trait traditionally linked to Physaraceae. This clade, designated as the new genus Neodiderma, was phylogenetically positioned as a sister group to Diderma, potentially representing a transitional group between Didymiaceae and Physaraceae, supported by both morphological and molecular evidence. Eleven new species — N. macrosporum, N. pseudobisporum, N. verrucocapillitium, N. rigidocapillitium, N. rufum, Physarum guangxiense, P. subviride, P. nigritum, P. biyangense, P. neoovoideum, and P. jilinense — were identified from China, and their phylogenetic positions were analysed. Additionally, N. spumarioides (formerly Diderma spumarioides) was recombined. The new and recombined species were formally described and illustrated, and a key to the sections and species of Neodiderma and Physarum was provided. [ABSTRACT FROM AUTHOR]

There are 11 species of triatomines in the USA, with seven reported in the American Southwest. These species are capable of transmitting Trypanosoma cruzi, the etiological agent of Chagas disease, but are generally sylvatic and rarely infect humans in the USA. iNaturalist is one of the most popular citizen science data portals, where users record encounters with any individual organism. As of November 2023, iNaturalist reported 722 confirmed triatomine observations in the American Southwest. Maximum entropy ecological niche modelling and bioclimatic environmental variables were used to predict zones of highest human-triatomine interaction. Models fit well for Triatoma protracta (0.85), T. rubida (0.94), and T. recurva (0.96). Precipitation in the warmest quarter was most predictive of T. protracta presence, while precipitation in the driest quarter was most predictive of T. rubida and T. recurva. Locations identified in the American Southwest with highest potential for human-triatomine interaction, and potential T. cruzi transmission, were coastal California, the Sierra Nevada foothills, southern Arizona and border areas of northern Mexico. Study findings can be used for targeted surveillance efforts to address the paucity of contemporary information regarding triatomine species diversity and geographical and ecological associations in the American Southwest. [ABSTRACT FROM AUTHOR]

In recent years, new wasp species and genera of Cynipidae have been described, and their species delimitation and evolutionary relationships have been supported using molecular markers. However, few studies have included comprehensive and extensive sampling of specimens across the complete distribution of a single genus. In this study, we analysed the phylogenetic relationships of the genus Amphibolips throughout its range using ultraconserved elements (UCEs). We collected 520 adult wasps from 401 sites in various geographic locations, predominantly in Mexico, and used 78 wasps for UCE analysis. Our results demonstrate that Amphibolips forms a monophyletic clade. Amphibolips can be further subdivided into four genetically well‐differentiated clades. Each clade had morphological traits that could be collectively characterised. Species delimitation using molecular sequencing highlights the taxonomic complexity involved in separating and assigning species using exclusively morphological criteria. This approach offers an opportunity to refine current morphological taxonomic criteria or propose new criteria to establish more accurate classifications. The rich diversity of host species and geographic regions in Mexico represents a biodiversity hotspot for Amphibolips. The number of undescribed species remains high. This study facilitates the determination of appropriate boundaries for putative new Amphibolips species. [ABSTRACT FROM AUTHOR]

Scutellaria strigillosa Hemsl., known for its traditional use in Chinese herbal medicine, is valued for heat-clearing and detoxifying, promoting diuresis, reducing swelling, alleviating pain, and preventing miscarriage. Despite its historical use, comprehensive studies on pharmacophylogenetic analysis, including genetic and chemical profiles and the antimicrobial activity of S. strigillosa are still lacking. Understanding these aspects is crucial for fully realizing its therapeutic potential and ensuring sustainable use. This study aims to elucidate these aspects through comparative genomics, metabolomics, and antimicrobial assays with Scutellaria baicalensis Georgi and Scutellaria barbata D. Don. The chloroplast genome of S. strigillosa was assembled, measuring 152,533 bp, and revealing a high degree of conservation, especially in the protein-coding regions, and identified four regions trnK(UUU) - rps16 , trnN(GUU) -t rnR(ACG) , accD - psaI , psbE - petL) of variability that could serve as phylogenetic markers. The phylogenetic analysis revealed a closer genetic relationship of S. strigillosa with S. tuberifera and S. scordifolia than traditionally classified, suggesting a need for taxonomic reevaluation within the genus. UPLC-Q-TOF-MS analysis in negative ion mode was used to explore the chemical diversity among these species, revealing distinct variations in their chemical compositions. S. strigillosa shared a closer chemical profile with S. barbata , aligning with phylogenetic findings. Metabolomic identification through Progenesis QI software resulted in the tentative identification of 112 metabolites, including a substantial number of flavonoids, diterpenoids, iridoid glycosides, phenylethanoid glycosides, and others. HPLC analysis further detailed the concentrations of 12 actives across the species, highlighting the variation in compound content. S. strigillosa shows antibacterial activity against Staphylococcus aureus and Pseudomonas aeruginosa , similar to S. baicalensis root extracts. This research enhances the understanding of the phylogenetic and phytochemical profiles and the antibacterial activity of S. strigillosa , offering new insights into its medicinal properties. The findings suggest a need for taxonomic reevaluation within the genus and underscore the potential antibacterial activity of S. strigillosa for therapeutic applications. Further studies are encouraged to explore its full medicinal potential and contribute to the sustainable development of Scutellaria species. [ABSTRACT FROM AUTHOR]

The relationship between phytoplankton abundances and wind forcing in upwelling systems involves a number of processes that make the relationship nonlinear in nature. In particular, although upwelling-favorable winds tend to provide nutrients for phytoplankton growth, they can also induce export of both biomass and nutrients to the open ocean through Ekman and eddy-induced transport, or dilution of populations through vertical mixing, which negatively impacts increase in biomass. These processes are essentially nonlinear and can interact antagonistically or synergistically on the overall coastal accumulation of biomass. Consequently, producers and consumers tend to decline above a certain wind threshold despite input of nutrient-enriched water. We have observed this phenomenon in an embayment off Central Chile (30°S), where almost 10 years (2000-2009) of microphytoplankton data were analyzed together with environmental variables and wind phenology. Our findings showed that abundance, species diversity and evenness of diatoms and dinoflagellates all increased post-2005 when the mean of the alongshore surface wind stress reached a maximum threshold value of 0.026 N m-2, observed at the decadal temporal variability scale. The increased abundances of diatoms and dinoflagellates post-2005 was associated with the changing phase of the Pacific Decadal Oscillation (PDO) from positive (warm) to negative (cold) phases, which was also associated with a decrease in the intra-seasonal wind activity. Both abundance and diversity of the microphytoplankton community peaked during the post-2005 period whereas higher abundances and frequency of harmful algal blooms (e.g. Pseudo-nitzschia australis) were observed prior to 2005. We suggest that the low-frequency (decadal) variations of mean wind stress during a transition phase of the PDO combined with the reduction in intra-seasonal (periods shorter than 2 months) wind variability after 2005 provided an "optimal environmental window" for the ecosystem. [ABSTRACT FROM AUTHOR]

Introduction: The incidence of nontuberculous mycobacterial (NTM) infections has increased worldwide, attracting attention in routine diagnostic settings, particularly among patients with suspected tuberculosis. This study aimed to acquire knowledge of NTM infections in patients with suspected tuberculosis and to evaluate the genetic diversity of the strains. Methods: In this study, 230 clinical specimens were collected from suspected tuberculosis patients. Following decontamination with N-Acetyl-L-cysteine–sodium hydroxide (NALC-NaOH), the sediments of specimens were inoculated onto Löwenstein–Jensen medium and then incubated at 37°C for 8 weeks. The samples that yielded positive cultures were evaluated through the sequencing of conserved fragments of IS6110 and hsp65. For those samples that were not identified as part of the M. tuberculosis complex (MTC) by IS6110 PCR, further analysis was conducted via PCR to detect fragments of the hsp65 gene. Results: Twenty-one NTM species were isolated from 230 clinical specimens (14 NTM from pulmonary specimens and 7 from extrapulmonary specimens). Among these, 12 (57.14%) were rapid-growing mycobacteria (RGM), and 9 (42.85%) were slow-growing mycobacteria (SGM). No M. avium complex (MAC) was identified in any of the specimens. Notably, the M. kansasii , M. gordonae , and M. abscessus strains presented significant genetic diversity. Conclusions: The prevalence of infections attributed to nontuberculous species surpasses that attributed to tuberculosis. These findings underscore the importance of exploring NTM species in individuals suspected of having TB. [ABSTRACT FROM AUTHOR]

Background: Discrimination is a recognized psychosocial stressor that has been linked to various negative health outcomes. This study explored the impact of discrimination on gut health, specifically focusing on microbiome changes, predicted metagenomic differences, transcriptomic profiles, and the potential for using a multi-omic approach to predict discrimination to identify discrimination status for an individual. Methods: We conducted a comprehensive investigation involving male and premenopausal female participants, using the Everyday Discrimination Scale to classify them into either high or low discrimination. Multiple questionnaires were administered to evaluate participants' physiological, psychological, and perceived stressors. Two diet questionnaires were also administered. Stool samples were collected for microbiome analysis and RNA sequencing. Microbial composition changes were analyzed using the Shannon index and Chao1 richness estimator for alpha diversity and the Aitchison distance metric for beta diversity. Differential abundance was evaluated using MaAsLin2, followed by metatranscriptomics sequencing and annotation. A multi-omic approach utilizing random forest was used to assess the predictability of discrimination. Results: The study results showed that high discrimination was linked to higher gut microbiome species richness (Chao1, p = 0.02) and significant beta diversity differences (p = 0.04). Prevotella and Ruminococcaceae were both less abundant in the high discrimination group. High discrimination participants also reported higher levels of depression, anxiety, perceived stress, early life adversity, visceral sensitivity, and neuroticism than those in the low discrimination group. Gene expression analysis revealed distinctive patterns, with significant changes in genes associated with environmental sensing (two-component system) and metabolic pathways. In a plot comparing gene transcription to DNA content, certain genes showed higher expression levels in participants who experienced both high and low levels of discrimination. Our random forest classifier demonstrated the capability to accurately differentiate individuals with high and low discrimination in our training cohort (AUC = 0.91). Conclusion: These findings illuminate the substantial impact of discrimination on gut health, encompassing microbiome composition, gene expression, and functional pathways. These findings suggest that discrimination is associated with internal biological changes that can be associated with negative health outcomes, opening research to examine novel pathways that can be used to mitigate the negative health effects of discrimination. [ABSTRACT FROM AUTHOR]

Plant species diversity is one of the most widely used indicators in ecosystem management. The relation of species diversity with the size of the sample plot has not been fully determined for Oriental beech forests (Fagus orientalis Lipsky), a widespread species in the Hyrcanian region. Assessing the impacts of plot size on species diversity is fundamental for an ecosystem-based approach to forest management. This study determined the relation of species diversity and plot size by investigating species richness and abundance of both canopy and forest floor. Two hundred and fifty-six sample plots of 625 m2 each were layout in a grid pattern across 16 ha. Base plots (25 m × 25 m) were integrated in different scales to investigate the effect of plot size on species diversity. The total included nine plots of 0.063, 0.125, 0.188, 0.250, 0.375, 0.500, 0.563, 0.750 and 1 ha. Ten biodiversity indices were calculated. The results show that species richness in the different plot sizes was less than the actual value. The estimated value of the Simpson species diversity index was not significantly different from actual values for both canopy and forest floor diversity. The coefficient of variation of this index for the 1-ha sample plot showed the lowest amount across different plot sizes. Inverse Hill species diversity was insignificant difference across different plot sizes with an area greater than 0.500 ha. The modified Hill evenness index for the 1-ha sample size was a correct estimation of the 16-ha for both canopy and forest floor; however, the precision estimation was higher for the canopy layer. All plots greater than 0.250-ha provided an accurate estimation of the Camargo evenness index for forest floor species, but was inaccurate across different plot sizes for the canopy layer. The results indicate that the same plot size did not have the same effect across species diversity measurements. Our results show that correct estimation of species diversity measurements is related to the selection of appropriate indicators and plot size to increase the accuracy of the estimate so that the cost and time of biodiversity management may be reduced. [ABSTRACT FROM AUTHOR]

Leaf-associated fungi, the fungi that depend on leaves to sporulate, have a rich Cenozoic record, however their earlier diversity is poorly characterized. Here we describe Harristroma eboracense gen. et sp. nov., a Middle Jurassic leaf-associated fungus colonizing the leaf cuticle of Nilssonia tenuicaulis (cycadophyte). To place our newly described species into a picture of the diversification of Mesozoic fungi, we reassess fossils with leaf-associated stromata in the context of fungal molecular phylogeny. Being melanized, with radiate stromata, and on leaves, H. eboracense and other fossils from the Jurassic and earlier periods are probably related to filamentous Ascomycota in the superclass Leotiomyceta. Characters needed for further resolution of leaf-associated fungal biology and classification, such as the presence of an ostiole for spore discharge and appressoria for entry into leaf tissue first appear in the Mesozoic fossil record. Among Early Cretaceous fossils, Spataporthe taylorii represents the oldest unambiguous evidence of perithecial Sordariomycetes while Protographum luttrellii and Bleximothyrium ostiolatum are the oldest Dothideomycetes thyriothecia. Environmental observations show that broad leaved gymnosperms (especially cycadophytes) growing in warm temperate wet forests might have been the first environment for the radiation of Leotiomyceta. [ABSTRACT FROM AUTHOR]

Plant species richness and composition are influenced by complex interactions between biotic and abiotic factors that operate on different spatial scales. Since spatial scales vary continuously in nature, it is expected that multiple factors simultaneously affect species richness and composition at an intermediate spatial scale (i.e., the mesoscale landscape level). Previous studies have shown that local topography and elevation are important factors for shaping intermediate spatial scale plant species richness; however, the relative importance of these factors has rarely been examined. Here, we used spatially explicit woody plant data to examine the factors that characterize the spatial pattern of primary evergreen forest biodiversity at the intermediate spatial scale. We found that the spatial pattern of species diversity in a predominantly warm temperate evergreen forest at the landscape level is mainly characterized by shifts in species composition along the elevation gradient. Our study also found that compositional shift along the elevational gradient was mainly caused by habitat specialization among congeneric species, suggesting that niche partitioning among closely-related species is a fundamentally important feature of the intermediate spatial scale species richness pattern. Furthermore, we found that specialization in a habitat of closely-related species can be established even within a limited environmental gradient. This suggests that biotic interactions among closely-related species may be an important factor driving habitat specialization, and biotic interactions may play an important role in shaping landscape-scale biodiversity patterns. [ABSTRACT FROM AUTHOR]

Intrahepatic cholestasis of pregnancy (ICP) is a pregnancy‐specific liver disease and the second most frequent cause of jaundice in pregnancy, but the etiology of it is poorly understood. By collecting blood and fecal samples from 12 healthy pregnant women (CON group) and 32 ICP patients (ICP group) in China, we performed 16s rRNA gene sequencing and analyzed microbial diversity. The results showed a decrease in species richness of the ICP group compared to that in the CON group, with a significant difference in species diversity between the two groups. Differential analysis revealed the following biomarkers: s__unclassified__Megamonas, g__Megamonas, f__Selenomonadaceae, c__Bacilli, and o__Lactobacillales. Importantly, we found a decrease in species richness of Selenomonadaceae at the family level and decreased bacilli at the class level in ICP patients. Correlation network analysis and functional gene prediction were performed accordingly. Our data provided new information linking microbiota and ICP, and are possibly helpful for further exploration of the disease. [ABSTRACT FROM AUTHOR]

Understanding of non-geniculate coralline algal (NGCA) diversity, prevalence, and distribution in the tropical western North Atlantic is currently limited by reliance on morphological and anatomical features that are inadequate for species identifications. Reef surveys from two study sites, the Florida Keys (Florida, USA) and Roatán (Honduras), provided prevalence data for the main benthic organisms as well as relative abundance for NGCA genera. NGCA collected during these surveys and from additional sites and depths were identified using DNA sequences from two plastid genes, psbA and rbcL, and two nuclear genes, SSU and LSU, and supported by morphological and anatomical descriptions. Bayesian and Maximum Likelihood phylogenetic analyses, along with species delimitation and genetic distance methods, resolved 11 genera within two orders. Within the Corallinales, the genera Dawsoniolithon, Porolithon and Spongites each had one species, Harveylithon and Lithophyllum had two, Titanoderma three, Hydrolithon four, Neogoniolithon eight, and an unknown genus within the subfamily Neogoniolithoideae had 11 putative species. Within the Hapalidiales, the genera Phymatolithon and Roseolithon each had one species. This study reinforces the inability of morphological and anatomical features to distinguish NGCA species in the tropical western North Atlantic, resulting in substantial underestimations of species richness and diversity. [ABSTRACT FROM AUTHOR]

Understanding elevation variation in biodiversity is a classic question in ecology and has implications for understanding climate change impacts on mountain ecosystems. While insects are the largest group of animals, the global trend in insect species richness with elevation is unknown. To date, single studies and taxa‐specific syntheses have provided no single picture, finding variable patterns of insect richness with elevation. A global synthesis across systems would provide a better understanding of how insect species richness changes with elevation and the possible environmental correlates of those patterns. We used published studies of terrestrial insect elevation gradients from 1990 to 2020 to ask: How do insect species richness change with elevation, and which environmental variables best explain this relationship statistically? With 1486 sites spanning 151 species richness‐elevation gradients from 80 studies from four diverse insect taxonomic groups and five biomes, we found that overall proportional richness reached a low‐elevation plateau and then decreased. We also show that mean annual temperature and seasonality best explain this trend. We suggest best practices and areas of interest for the future of insect richness‐elevation studies, including underrepresented groups, geographic areas, and more standardized methods. [ABSTRACT FROM AUTHOR]

ABSTRACT Aim Location Time Period Taxa Methods Results Main Conclusions The study of the theory of island biogeographic (TIB) has focused mainly on plants and vertebrates, with support for the predictions that species richness decreases with distance from the mainland and increases with island size. However, less work has been done on invertebrates. Similarly, the study of the island rule has been studied mainly in vertebrates. A group of invertebrates that can facilitate the study of TIB and the island rule are orchid bees (Apidae: Euglossini), because they are easily collected and show powerful flight performances that allows them to travel long distances. We wondered if these bees would follow the predictions of island biogeography, given that their populations may not be isolated across islands. To test if there is an homogenitazion of orchid bee communities across islands, we evaluated orchid bees abundance and species composition across islands. Besides, we tested the island rule by examining body size variations in individuals collected across islands.Coiba National Park (Panama).May and June 2023.Orchid bees (Hymenoptera: Apidae: Euglossini).By using traps with chemical attractants, we sampled male bees from five islands and the mainland in Coiba National Park in the Pacific side of Panama. We tested the TIB by evaluating whether richness decreased with distance from the mainland or whether increased with island area. To investigate the island rule, and whether there is variation in body size across islands, we used Euglossa imperialis and Euglossa mixta as models, the two most abundant species in the study area.For the overall orchid bee community, we found that our results fit one of the predictions of IBT, increases in orchid bee abundance with island area; however, species richness did not decrease with isolation and did not increase with island area as predicted by TIB. An interesting result was that as distance from the mainland increased few species became more dominant. Regarding the island rule, we found in the two Euglossa species a marked pattern of reduction in body size as distance from the mainland increased, which seems to outweigh the effect of island size, since the largest island and one of the farthest showed some of the smallest body sizes.Whether euglossine bees travel long distances across islands in marine environments remain unclear. As distance from the mainland increases, few species become dominant, which may be caused by a decrease of resources that favours generalist species. This increase in abundance may explain the decrease in body size with isolation, as perhaps competition for resources increases. Our study provides novel insights to better appraise the dynamics of orchid bees' communities in insular habitats. [ABSTRACT FROM AUTHOR]

The cryptophytes of the Black Sea are a poorly studied group that has yet to be fully resolved using comprehensive taxonomic approaches, including electron microscopy and molecular genetics. This study describes Proteomonas agilis sp. nov. belonging to a marine cryptophyte genus formerly thought to be monotypic. The morphological characters of the new species align with those currently used to delineate the genus Proteomonas, and are similar to those of the haplomorph P. sulcata, the type species, with minor morphological and molecular modifications. Phylogenetic relationships inferred from nuclear-encoded SSU, LSU, and ITS2 rDNA datasets confirmed that the new species belongs to the monophyletic genus Proteomonas, which is divided into two unequal branches. The largest and relatively long branch contains 18 strains, including P. agilis sp. nov. Comparison of ITS2 rRNA secondary structures using the compensatory base changes approach confirmed the distinction of P. agilis sp. nov. from the other Proteomonas strains. Our findings revealed that the cryptophyte genus Proteomonas is not monotypic but includes a range of unstudied species besides the type species P. sulcata and P. agilis sp. nov. described in this study. Therefore, an integrated approach is required for a careful revision of the genus. [ABSTRACT FROM AUTHOR]

Species extinctions increase at a global scale; therefore, rapid inventorying of our planet's biodiversity is becoming more and more important. As insects represent the highest portion of the fauna and play key ecological roles, it is a pressing need to investigate their biodiversity and accelerate species discovery, especially for understudied insect groups, also known as "dark taxa." Phoridae (Diptera) are a great example of a "dark taxon," in particular the genus Megaselia Rondani.The use of integrative methodologies is the best approach to face up to the task of describing hyperdiverse and dark taxa, as morphology alone can be imprecise and slow, and molecular methods alone are often insufficient and lead to errors.Here, we used the Large‐Scale Integrative Taxonomy (LIT) approach to sort 9000 Megaselia into 277 putative species based on DNA barcodes. Each cluster passed through an evaluation of the predictors for incongruence indices between clusters and morphology (maximum p‐distance, stability index), and a subset of specimens were morphologically examined.We provided species estimates with Chao1, and our results suggest a 15% increase in species richness on our dataset. As this estimate was mostly based on samples from southern Germany, the species count will likely increase with expanded geographic sampling. This is a step forward in the study of this taxon, despite the fact that the German insect fauna is one of the best known in Europe and boasts more than one hundred years of study on phorids. [ABSTRACT FROM AUTHOR]

Astragalus (Fabaceae) is astoundingly diverse in temperate, cold arid regions of Earth, positioning this group as a model clade for investigating the distribution of plant diversity in the face of environmental challenges. Here, we identify the spatial distribution of diversity and endemism in Astragalus using species distribution models for 752 species and a phylogenetic tree comprising 847 species. We integrated these to map centers of species richness (SR) and relative phylogenetic diversity (RPD) and used randomization approaches to investigate centers of endemism. We also used clustering methods to identify phylogenetic regionalizations. We then assembled predictor variables of current climate conditions to test environmental factors predicting these phylogenetic diversity results, especially temperature and precipitation seasonality. We find that SR centers are distributed globally at temperate middle latitudes in arid regions, but the Mediterranean Basin is the most important center of RPD. Endemism centers also occur globally, but Iran represents a key endemic area with a concentration of both paleo‐ and neoendemism. Phylogenetic regionalization recovered an east‐west gradient in Eurasia and an amphitropical disjunction across North and South America; American phyloregions are overall most closely related to east and central Asia. SR, RPD, and lineage turnover are driven mostly by precipitation and seasonality, but endemism is driven primarily by diurnal temperature variation. Endemism and regionalization results point to western Asia and especially Iran as a biogeographic gateway between Europe and Asia. RPD and endemism highlight the importance of temperature and drought stress in determining plant diversity and endemism centers. [ABSTRACT FROM AUTHOR]

The Millettioid/Phaseoloid (or the Millettioid) clade is a major lineage of the subfamily Papilionoideae (Fabaceae) that is poorly understood in terms of its diversification and biogeographic history. To fill this gap, we generated a time‐calibrated phylogeny for 749 species representing c. 80% of the genera of this clade using nrDNA ITS, plastid matK, and plastome sequence (including 38 newly sequenced plastomes). Using this phylogenetic framework, we explored the clade's temporal diversification and reconstructed its ancestral areas and dispersal events. Our phylogenetic analyses support the monophyly of the Millettioid/Phaseoloid clade and four of its tribal lineages (Abreae, Desmodieae, Indigofereae, and Psoraleeae), while two tribal lineages sensu lato millettioids and phaseoloids are polyphyletic. The fossil‐calibrated dating analysis showed a nearly simultaneous divergence between the stem node (c. 62 Ma) and the crown node (c. 61 Ma) of the Millettioid/Phaseoloid clade in the Paleocene. The biogeographic analysis suggested that the clade originated in Africa and dispersed to Asia, Europe, Australia, and the Americas at different periods in the Cenozoic. We found evidence for shifts in diversification rates across the phylogeny of the Millettioid/Phaseoloid clade throughout the Cenozoic, with a rapid increase in net diversification rates since c. 10 Ma. Possible explanations for the present‐day species richness and distribution of the Millettioid/Phaseoloid clade include boreotropical migration, frequent intra‐ and intercontinental long‐distance dispersals throughout the Cenozoic, and elevated speciation rates following the Mid‐Miocene Climatic Optimum. Together, these results provide novel insights into major diversification patterns of the Millettioid/Phaseoloid clade, setting the stage for future evolutionary research on this important legume clade. [ABSTRACT FROM AUTHOR]

Neuroptera, as a small relic group of Insecta undergoing a rapid species diversification during the Mesozoic Era, is known by diverse extinct endemic lineages preserved as impression fossils and in amber. The current understanding of Mesozoic neuropterans′ diversity has mainly focused on the adults, because the contemporaneous larvae have been fairly rare especially for the Jurassic lacewings. Herein, a new giant lacewing larva, Natator giganteus gen. et sp. nov., is described from the Middle Jurassic Daohugou Beds of China. The remarkable larva is characterized by its impressively large body size, distinctively elongated cervix, and presence of swimming hairs on legs, which provide direct evidence to reveal an aquatic habit for the Jurassic lacewing larva. The morphological analysis indicates this giant larva would have probably inhabited the benthic environments of Jurassic montane rivers and streams. In addition, its morphological specialization suggests that it might have adopted an ambush predation strategy to catch its prey. The finding enhances our knowledge of the species diversity and morphological plasticity for the Jurassic lacewing larvae, and reveals that the aquatic lineages of Neuroptera exhibited dramatically structural and ecological convergence across the evolutionary process. [ABSTRACT FROM AUTHOR]

The genus Xylaria comprises a diverse group of fungi with a global distribution and significant ecological importance, known for being a source of bioactive secondary metabolites with antibacterial, antioxidative, anticarcinogenic, and additional properties. In this study, we present a comprehensive taxonomic revision of the species of Xylaria found in some parts of southern China, characterized by an extensive multilocus phylogeny analysis based on internal transcribed spacer (ITS), TUB2 (β‐tubulin), and DNA‐directed RNA polymerase II subunit 2 (rpb2) gene regions. Morphological examination and detailed comparative analyses of the collected specimens were conducted to determine the distinctiveness of each species. The multilocus phylogeny approach allowed us to infer evolutionary relationships and assess species boundaries accurately, leading to the identification of 40 novel Xylaria species hitherto unknown to science. The newly described species are: X. baoshanensis, X. bawanglingensis, X. botryoidalis, X. dadugangensis, X. doupengshanensis, X. fanglanii, X. glaucae, X. guizhouensis, X. japonica, X. jinghongensis, X. jinshanensis, X. kuankuoshuiensis, X. liboensis, X. negundinis, X. orbiculati, X. ovata, X. pseudoanisopleura, X. pseudocubensis, X. pseudobambusicola, X. pseudoglobosa, X. pseudohemisphaerica, X. pseudohypoxylon, X. puerensis, X. qianensis, X. qiongzhouensis, X. rhombostroma, X. serratifoliae, X. shishangensis, X. shuqunii, X. shuangjiangensis, X. sinensis, X. tongrenensis, X. umbellata, X. xishuiensis, X. yaorenshanensis, X. yinggelingensis, X. yumingii, X. yunnanensis, X. zangmui, and X. zonghuangii. The study's findings shed light on the distinctiveness of the newly described species, supported by both morphological distinctions and phylogenetic relationships with their close relatives. This taxonomic revision significantly contributes to our understanding the diversity of Xylaria in China and enriches the knowledge of fungal biodiversity worldwide. [ABSTRACT FROM AUTHOR]

This paper explores bird sound imitation as a particular type of interspecies interaction. Using questionnaires, interviews, and participatory observations, a survey was conducted among Estonian birders to find out about the prevalence of the practice, the diversity of imitated species, the means of imitation, and the attitudes of birders towards the use of recordings in the field. The study found that 55 species of birds from 11 orders were imitated and using one's own voice was the most common way of imitating birds. The choice of the method of imitation depended on the purpose and context of imitation. Most birders supported the use of playbacks for scientific purposes, but not for daily birding. With the easy availability of playback technologies, there are increased concerns about the ubiquitous presence of disturbing factors. At the same time, however, the technological boundlessness is balanced by the heightened ethical self-reflection of birders. [ABSTRACT FROM AUTHOR]

The species of the genus Deschampsia are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus Deschampsia of different geographical origin with a method of sequencing by Sanger (ITS1–5.8S rRNA gene–ITS2, 14 species) and with a method of a locus-specific next-generation sequencing (NGS) on the Illumina platform (ITS1–5.8S rRNA, 7 species). All species of Deschampsia formed one clade; the species, referred by some authors on the basis of morphological characters to the species D. cespitosa s.l., entered one subclade. Subantarctic species formed a separate subclade and their ribotypes formed their own subnetwork. Avenella flexuosa, earlier referred to Deschampsia, entered the other clade, though this species contains some ribotypes common with some Deschampsia species. Deschampsia pamirica and related mountain species have their own specific ribotype groups. On the network of the ribotypes, one can see that D. cespitosa from Great Britain forms a network with some species, but D. cespitosa from the USA forms its own network. Ribotype analysis of each sample revealed traces of introgression with Deyeuxia/Calamagrostis in D. cespitosa and with A. flexuosa and probable introgression of Northern and subantarctic species. [ABSTRACT FROM AUTHOR]

Biodiversity loss will lead to a serious decline for ecosystem services, which will ultimately affect human well-being and survival. Monitoring the spatial and temporal dynamics of grassland biodiversity is essential for its conservation and sustainable development. This study integrated ground monitoring data, Landsat remote sensing, and environmental variables in the Three Rivers Headwater Region (TRHR) from 2000 to 2021. We established a reliable model for estimating grassland species diversity, analyzed the spatial and temporal patterns, trends of change, and the driving factors of changes in grassland species diversity over the past 22 years. Among models based on diverse variable selection and machine learning methods, the random forest (RF) combined stepwise regression (STEP) model was found to be the optimal model for estimating grassland species diversity in this study, which had an R2 of 0.44 and an RMSE of 2.56 n/m2 on the test set. The spatial distribution of species diversity showed a pattern of abundance in the southeast and scarcity in the northwest. Trend analysis revealed that species diversity was increasing in 80.46% of the area, whereas 16.59% of the area exhibited a decreasing trend. The analysis of driving factors indicated that the changes in species diversity were driven by both climate change and human activities over the past 22 years in the study area, of which temperature was the most significant driving factor. This study effectively monitors grassland species diversity on a large scale, thereby supporting biodiversity monitoring and grassland resource management. [ABSTRACT FROM AUTHOR]

[Display omitted] • The dilution effect was test using the goldfish-monogenean system. • Low competence hosts were necessary for a dilution effect. • The non-competent hosts did not result in dilution effect. • Host schooling behavior played a key role in restricting the dilution effect. High species diversity in a community may reduce the risk of infectious disease, termed the dilution effect. However, the generality of the dilution effect in different disease systems remains controversial as both host competence and behaviors of hosts may play roles in dilution or amplification of disease. Using the goldfish (Carassius auratus)-monogenean ectoparasite (Gyrodactylus kobayashii) system, effects of host competence and schooling behavior on parasite transmission were investigated while holding focal host density constant. Following competency tests of 12 fish species as potential hosts for the parasite, infection by G. kobayashii was determined on fins of goldfish mixed with each of three different species based on their level of host competence, including Prussian carp, Carassius gibelio (low competence), grass carp, Ctenopharyngodon idellus (non-competent), swordtail, Xiphophorus helleri (non-competent), and the four species combined. Compared with mean abundance (85.8 ± 25.1) on goldfish in the control group, the mean abundance on goldfish decreased significantly when paired with 10 Prussian carp (30.0 ± 16.5), but did not differ significantly when paired with 10 swordtail (70.0 ± 22.2), 10 grass carp (116.1 ± 33.2), or the multi-species of three Prussian carp, four grass carp and three swordtail (75.9 ± 30.8) during the 11-day experiment. The parasite was also found on the Prussian carp in the Prussian carp group and the multi-species group at a mean abundance of 7.1 and 10.9, respectively. Video recording showed that the school of goldfish mixed well with the Prussian carp, while they maintained separation from the grass carp and swordtail when mixed together. The distance between goldfish increased, and swimming speed and contact time decreased with the additional of other fish species for all groups. The results suggested that the presence of a low-competence host in sufficient numbers was a necessary condition for a dilution effect due to encounter reduction, and the dilution effect may also be enhanced by changes in schooling behavior of goldfish in the presence of low competence hosts. However, the presence of non-competent hosts did not result in any dilution effect owing to the specialist nature of the parasites and the lack of mixing with schools of goldfish. [ABSTRACT FROM AUTHOR]

Nutrient enrichment impacts grassland plant diversity such as species richness, functional trait composition and diversity, but whether and how these changes affect ecosystem stability in the face of increasing climate extremes remains largely unknown.We quantified the direct and diversity‐mediated effects of nutrient addition (by nitrogen, phosphorus, and potassium) on the stability of above‐ground biomass production in 10 long‐term grassland experimental sites. We measured five facets of stability as the temporal invariability, resistance during and recovery after extreme dry and wet growing seasons.Leaf traits (leaf carbon, nitrogen, phosphorus, potassium, and specific leaf area) were measured under ambient and nutrient addition conditions in the field and were used to construct the leaf economic spectrum (LES). We calculated functional trait composition and diversity of LES and of single leaf traits. We quantified the contribution of intraspecific trait shifts and species replacement to change in functional trait composition as responses to nutrient addition and its implications for ecosystem stability.Nutrient addition decreased functional trait diversity and drove grassland communities to the faster end of the LES primarily through intraspecific trait shifts, suggesting that intraspecific trait shifts should be included for accurately predicting ecosystem stability. Moreover, the change in functional trait diversity of the LES in turn influenced different facets of stability. That said, these diversity‐mediated effects were overall weak and/or overwhelmed by the direct effects of nutrient addition on stability. As a result, nutrient addition did not strongly impact any of the stability facets. These results were generally consistent using individual leaf traits but the dominant pathways differed. Importantly, major influencing pathways differed using average trait values extracted from global trait databases (e.g. TRY).Synthesis. Investigating changes in multiple facets of plant diversity and their impacts on multidimensional stability under global changes such as nutrient enrichment can improve our understanding of the processes and mechanisms maintaining ecosystem stability. [ABSTRACT FROM AUTHOR]

Nature‐based solutions (NbS) have emerged at the science, policy and practitioner interface to address environmental challenges facing society. NbS involve people working with nature to protect, restore or manage ecosystems. Yet NbS vary to the extent they support biological diversity which has implications for ecological resilience.We reviewed how ecological resilience has been conceptualised in the NbS literature. The literature included reference to both resilience to specific disturbances and general resilience to future environmental change.We found reporting of resilience mechanisms was limited except for afforestation efforts where there is increasing recognition of the role of species diversity in contributing to resilience. Reporting was limited for resilience mechanisms that operate within species and populations (e.g. genetic diversity) and at the landscape scale (e.g. connectivity). Resistance was overlooked despite the prevalence of NbS intended to address climate change. From the broader ecological literature, we distilled resilience mechanisms that have been identified for native and experimental ecosystems and suggested interventions for the emergence of resilience mechanisms in NbS.Synthesis. Interventions to conserve biodiversity such as retaining and restoring ecosystems, are critical given that biodiversity, within and across scales of biological organisation, underpins several ecological resilience mechanisms in NbS. [ABSTRACT FROM AUTHOR]

Productive grasslands in temperate regions have relied strongly on low plant diversity with high management intensity and fertiliser inputs. Increasing plant diversity can provide high yields of digestible forage for livestock production with lower environmental impacts, and thus represents a diversity‐dependent nature‐based solution that can deliver multiple ecosystem functions.Sharing lessons from the design of managed, productive grassland communities, we address the following questions: how can we identify combinations of plant species that best deliver a selected function or multiple functions? and; when is community composition more important than species richness?We describe approaches that separate plant diversity into its underlying components: species richness, composition and relative abundance. Disentangling these three components facilitates a more nuanced understanding of how diversity can contribute to the design of diversity‐dependent nature‐based solutions. [ABSTRACT FROM AUTHOR]

The ecological resistance to the invasion of alien species has been extensively researched at the within‐trophic level; however, the effect of cross‐trophic interactions remains largely unknown. The red imported fire ant (RIFA, Solenopsis invicta) is a globally invasive species, and a cross‐trophic interaction study between RIFAs and plants may provide a more comprehensive understanding and management of its invasion.We hypothesized that the diversity of trees, which are the primary producers supporting terrestrial ecosystems, could suppress the invasion of omnivorous RIFAs by regulating food resources (e.g. plants and arthropods) and the microenvironment (e.g. soil microclimate) as well as enhancing competition with other carnivorous ants. To test this hypothesis, we investigated RIFA abundance and mound numbers across tree species richness gradients in a subtropical plantation forest.Using structural equation models, we discovered that tree species richness had contrasting effects on RIFA abundance and mound numbers. RIFA abundance directly decreased with higher tree species richness because of the dilution effect (i.e. lower abundance of preferred tree species). In contrast, RIFA mound numbers indirectly increased with tree species richness via an increase in arthropod abundance (excluding ants) (i.e. more ample food resources for RIFA). Moreover, warmer soil temperatures decreased RIFA abundance, whereas other carnivorous ant species richness and abundance negatively affected RIFA abundance and mound numbers.Synthesis and applications: Our findings demonstrate that the ecological resistance to RIFA invasion is influenced by tree species richness in a complex manner; specifically, the relative strengths of the effects of tree species characteristics, native competitors and environmental conditions are likely to impact the power of ecological resistance. This highlights the importance of cross‐trophic interactions underlying the resistance of complex ecosystems to alien species invasion; therefore, maintaining diverse tree communities in controlled systems (e.g. suburban and urban green spaces) should be viewed as a potential strategy for controlling RIFA invasion. [ABSTRACT FROM AUTHOR]

Cliff ecosystems provide refuge to 35%–66% of the world's endemic plants. However, they face growing threats from sport climbing. Evidence suggests that unclimbed cliffs harbour approximately twice the plant richness compared with climbed cliffs, with increasing impact as climbing intensity increases. Unfortunately, it remains unknown whether the climbing impact on cliff vegetation originates from the development (opening) of climbing routes or from temporal changes resulting from subsequent climbing.We recorded cliff vascular plants and lichens at the protected natural area of El Potrero Chico (Mexico) before and after the development of new climbing routes. Subsequently, we re‐recorded the routes at sequential timepoints after 10, 20, and 30 ascents. Additionally, we examined whether the abundance of cliff vegetation influences the extent of climbing impact and whether the surroundings of the routes were also affected.We found that the opening of climbing routes exerted the strongest negative effects on cliff plants, reducing species richness by 38%, while subsequent ascents generated a minimal impact. Worryingly, route opening affected not only species richness in the route itself but also the surroundings of the routes. After 30 ascents, cliff plant abundance decreased by 60.6% within the bolted routes, whereas it decreased by 42.3% in the surroundings. However, this impact depended on the original cliff vegetation abundance. Lichen cover showed a gradual decrease, indicating that cliff‐dwelling lichens are affected not only by the opening of the route but also by subsequent ascents.Synthesis and applications: Given the almost non‐existent regulation of outdoor climbing activities in most countries, we urge the implementation of a conservation management protocol that defines clear strategies to regulate climbing activities and preserve pristine cliffs. On yet unclimbed cliffs with narrow endemic, rare, or threatened species, we propose banning the establishment of new climbing areas. On climbed cliffs lacking protected species, dynamic management actions should be implemented, such as setting a maximum number of routes that can be established and defining limits of acceptable change as climbing intensity increases. The proposed conservation management should help to halt the loss of unique cliff biodiversity and safeguard pristine cliff ecosystems. [ABSTRACT FROM AUTHOR]

Tropical forest understories tend to be light‐limited. The red‐to‐far‐red ratio (R:FR) is a useful and reliable index of light quality and its spatial variability can influence competition between native and non‐native seedlings. While per cent light transmittance has been quantified in some Hawaiian lowland wet forests (HLWF), no information exists on how the spatial distribution of understorey light varies in relation to species invasion, or if patterns of seedling regeneration and light are linked.We measured the R:FR of light in the understorey to assess light quality in three HLWF forest types: native‐dominated, partially invaded and Psidium cattleyanum‐ (strawberry guava) dominated to quantify light quality in the understorey (0–50 cm height). We also identified relationships between light quality and native and non‐native seedling presence, diversity and abundance. Together, these data can help to determine the restoration potential of HLWF.Linear mixed‐effect modelling showed that native‐dominated forests had significantly greater R:FR than P. cattleyanum‐dominated forests, demonstrating a transformation in the light environment with increased invasion. Heterogeneity in R:FR varied more across sites than among forest types. In both native‐dominated and partially invaded forests, there were more native seedlings in the low‐quality R:FR (0.0–0.40) category and fewer in the medium‐ (0.41–0.70), and high‐quality (≥0.71) light categories than would be expected by chance, and there were no native seedlings in the P. cattleyanum‐dominated forests.Native‐dominated forests had greater species richness and abundance of native seedlings than the partially invaded forests, likely due to propagule availability. However, the spatial clustering of seedlings, the mismatch of native seedlings in light environments less suitable, and a considerable proportion of open high‐quality microsites, highlights that conditions are not optimal for native species in HLWF in the long term.Synthesis and applications. The native‐dominated and partially invaded forests still hold conservation value, despite variation among sites. Seedling additions could be targeted to different R:FR environments and at different spatial scales, but the lack of a strong relationship between R:FR and seedling number suggests that other factors besides light quality should be considered in seedling enrichment or other management activities. [ABSTRACT FROM AUTHOR]

In the course of land‐use change, especially since the mid‐20th century, the area of semi‐natural (unimproved) grasslands has dramatically decreased. One way to counteract this process is to designate nature reserves. However, the effectiveness of nature reserves is controversial.The aim of our study was to evaluate the environmental drivers of species richness and biomass of Orthoptera (hereinafter termed 'grasshoppers') in grasslands inside nature reserves and within the intensively used agriculture landscape (hereinafter termed 'wider countryside'). For this purpose, we sampled the grasshoppers at the landscape scale in 45 randomly selected plots. Each plot had a size of 5 ha. The abundance of grasshoppers, as a basis for the biomass calculation, was recorded at the habitat scale in 20 meadow patches (500 m2 each). In addition, various environmental parameters such as habitat diversity, mowing intensity and vegetation structure were determined at the landscape and habitat scale.Our results illustrate the importance of nature reserves for the conservation of grasshoppers. Control plots in the wider countryside harboured fewer species than plots within nature reserves. The differences were even clearer among threatened species. On average, plots in nature reserves had almost twice as many threatened species than control plots in the wider countryside. The comparison revealed similar patterns at the habitat scale: both the number of species and biomass were higher in nature reserves. At the landscape scale, number of species were best explained by the amount of wet grassland and habitat diversity. We identified mowing intensity and to a lower extend the degree of drainage as the key drivers of species richness and biomass at the habitat scale.Synthesis and applications: To preserve biodiversity in nature reserves, we recommend (i) leaving uncut refuges during mowing and (ii) blocking drainage to stabilise the water level. Both measures contribute to a high species number and abundance of grasshoppers and many other insects. An effective conservation measure to promote species richness in the wider countryside would be to increase habitat diversity. This can be done by creating or restoring fallow islands, field margins, fringes and hedgerows. [ABSTRACT FROM AUTHOR]