22 results on '"Swedish Agency for Marine and Water Management"'
Search Results
2. Spatio-temporal composition and dynamics of zooplankton in the Kalmar Sound (western Baltic Sea) in 2009-2010
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Swedish Agency for Marine and Water Management, Swedish Environmental Protection Agency, Díaz-Gil, Carlos, Werner, Malin, Lövgren, Olof, Kaljuste, Olavi, Grzyb, Anna, Margonski, Piotr, Casini, Michèle, Swedish Agency for Marine and Water Management, Swedish Environmental Protection Agency, Díaz-Gil, Carlos, Werner, Malin, Lövgren, Olof, Kaljuste, Olavi, Grzyb, Anna, Margonski, Piotr, and Casini, Michèle
- Abstract
In pelagic food webs, zooplankton is the link between lower and higher trophic levels. It is thus essential to know how the zooplankton community structure varies with its environment. We investigated the seasonal and spatial variation in the zooplankton diversity and community structure during two consecutive years in the Kalmar Sound, along the Swedish east coast, an area with a strong bathymetric gradient and of high ecological importance for e.g. commercial fish species. Two zooplankton communities were identified in the area: a coastal/estuarine community in the south and an open-water community in the north. They were separated mainly by differing salinity and temperature conditions. Biodiversity increased from spring to autumn and was higher in the open waters. © 2014.
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- 2014
3. Rapid faunal colonization and recovery of biodiversity and functional diversity following eelgrass restoration
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Karine Gagnon, Enora‐Hawa Bocoum, Chiau Yu Chen, Susanne Pihl Baden, Per‐Olav Moksnes, Eduardo Infantes, Åbo Akademi University [Turku], Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Gothenburg (GU), Swedish Research Council (FORMAS) [2019-01192], Maj and Tor Nessling Foundation [201900244], European Union [730984], European Maritime and Fisheries Fund, and Swedish Agency for Marine and Water Management
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spatial scale ,epifauna ,Ecology ,seagrass ,functional traits ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Ecology, Evolution, Behavior and Systematics ,infauna ,diversity ,Nature and Landscape Conservation - Abstract
International audience; Seagrass meadows and their associated biodiverse assemblages have declined globally due to environmental and anthropogenic stressors. Restoration of these critical habitats has the potential to reverse coastal biodiversity loss. Here, we tested the role of patch size (which can affect recruitment, food availability, and/or predation) in driving faunal colonization in an eelgrass (Zostera marina) restoration trial in Sweden. Eelgrass shoots were transplanted in plots with different configurations (continuous vs. checkerboard patterns with three patch sizes), and we followed invertebrate colonization (biodiversity and functional diversity) during the first two growing seasons. We found rapid faunal colonization following the transplantation of eelgrass shoots in all plots with invertebrate densities reaching 50-80% of the reference meadow after only one growing season (3 months). After two growing seasons (15 months), the faunal density, biodiversity, and functional diversity were similar to the reference meadow, despite eelgrass density and biomass still being lower than the reference meadow. Biodiversity, functional diversity, and community structure were similar among the different planted plots, that is, there was no indication that patch size influenced faunal colonization. We therefore consider that smaller patches embedded within larger restoration plots can be as effective for promoting biodiversity as continuous patches, with reduced costs and fewer shoots required. We also noted high natural variability between years both in the reference meadow and planted plots, showing the dynamic nature of seagrass ecosystems, and the importance of a well-planned monitoring scheme that considers the reference area and restored area within the same temporal scale.
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- 2023
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4. Lake hydromorphology assessment in Europe: Where are we 20 years after the adoption of the Water Framework Directive?
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Christine Argillier, Alexandra Carriere, Caroline Wynne, Seppo Hellsten, Katarina Vartia, Sandra Poikane, Risques, Ecosystèmes, Vulnérabilité, Environnement, Résilience (RECOVER), Aix Marseille Université (AMU)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Pôle Écla - écosystèmes lacustres (ECLA), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Office français de la biodiversité (OFB), Freshwater Centre [Helsinki], Finnish Environment Institute (SYKE), The Swedish Agency of Marine and Water Management (SwAM), European Commission - Joint Research Centre [Ispra] (JRC), and European CommissionFrench Office for Biodiversity
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Environmental Engineering ,Morphological alterations ,Water ,Assessment methods ,Pollution ,Lake status ,Europe ,Lakes ,Surveys and Questionnaires ,Hydrological features ,[SDE]Environmental Sciences ,Environmental Chemistry ,ZABR ,Waste Management and Disposal ,Ecosystem ,Environmental Monitoring ,Hydromorphological processes - Abstract
International audience; The characterization of lake hydromorphology is crucial to understand the dynamics of biodiversity. In Europe, it isalso a regulatory requirement of the Water Framework Directive. However, according to the literature, few methodsinclude this characterization. The aim of this study is to review the state of the art of the methods currently used orunder development in European countries to assess lake hydromorphological status for the implementation of theWFD. Our analysis is based on responses to a questionnaire distributed to national experts on hydromorphologyof the 28 countries implementing the WFD. Our results highlighted significant progress in the assessment ofhydromorphological features and processes. Water level regime, through the range of water flow or existing watermanagement, and structure of the shore zone through macrophytes and substrate characteristics or measurement oflateral connectivity, are the most frequently assessed features. Stratification, surface/groundwater connection andplanform pattern are the lake features most frequently omitted from the methods. However, in most of the countries,the development of methods was still in progress to meet the WFD requirement. Definition of reference condition is acentral component of all WFD compliant assessment tools but this is a challenge particularly in the assessment ofhydromorphological alteration of reservoirs. Similarly, demonstrating strong links between hydromorphological indicatorsand biological quality elements remains a challenge with many knowledge gaps still evident. These results highlight the need for rapid collection of new environmental data and the need for conceptual and applied research to make methodological progress in assessing lake hydromorphology and ensuring habitat quality.
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- 2022
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5. Enabling local blue growth in developing countries: a thematic review
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Swedish Agency for Marine and Water Management
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Administration and dimensions ,Human activity ,Blue economy ,Blue growth ,Low Income Developing States (LIDS) ,SwAM Ocean ,Developing countries - Abstract
Blue growth – the prospect of economic revenue and wellbeing from the sustainable use of ocean resources – has caught the interest of most coastal and island nations of the world, including many developing countries. The sea alone does not, however, spur socioeconomic development in coastal communities. A large body of scientific literature explores the circumstances under which a community’s access to natural resources actually leads to local economic growth. This study specifically examines the literature targeting the communal-level outcome of aquatic resource use in developing countries, with a focus on identifying the prerequisites for socioeconomic wellbeing resulting from the exploitation of such resources. More specifically, this study strives to identify the institutional and infrastructure factors that promote local blue growth in developing countries. It consists of a thematic review of 90 scientific articles involving systematic mapping, regression analysis and content analysis. The study concludes that the incomes and wellbeing of coastal communities in developing countries depend on well-functioning value chains and the degree of social development. The results also show that the sustainability of marine and coastal resources is associated with the quality of resource management, the degree of coherence of policy and legal frameworks and the manner in which they are communicated. Inadequate resource management and incoherent policies and laws, on the other hand, are associated with lower incomes, wealth and employment. The study identifies a number of critical factors related to the type and quality of governance. Blue growth at local level benefits from governance frameworks that are coherent and reliable, leadership that is dynamic and legitimate, an administration that is reliable and enforcement that is efficient. It is also of great importance that decisions affecting the livelihoods of coastal communities be adapted to the local circumstances and that communities be given adequate opportunity to influence those decisions. Coastal-community development depends on the degree of social cohesion and equity in access to resources, as well as on the capacity of individuals and organisations. Such capacity is important not only in the private sphere for the development of sustainable blue businesses, but also in the public sphere for the design and implementation of public policies that are evidence-based and adapted to context. A further conclusion of this study is that local blue growth benefits from the existence of well-functioning value chains, markets that are open and accessible, and infrastructure that is adequate and well maintained. Based on these results, the study proposes the following eight recommendations for consideration by authorities and development agents working for local blue growth. These recommendations are further elaborated in Chapter 6. 1. Ensure that legal frameworks and policies affecting the blue economy are coherent, clear and predictable. 2. Support the development of well-functioning value chains for blue economy products and services 3. Support the creation and development of organisations for blue growth in the local community. 4. Appreciate the importance of high-quality leadership. 5. Engage local communities in decisions affecting their blue economy. 6. Enhance the capacity and technical skills of individuals and institutions of the blue economy. 7. Provide and maintain the infrastructure necessary for local blue growth. 8. Build local blue growth using the whole toolbox – the above recommendations for advancement of local blue growth should not be viewed in isolation but addressed simultaneously. This report is a result of SwAM Ocean, an international development cooperation programme being operated by the Swedish Agency for Marine and Water Management (SwAM). SwAM Ocean aims to contribute to poverty reduction through sustainable use of aquatic resources. To reach this goal we need a good understanding of the premises for enabling long-term blue growth in coastal communities. This report is part of a four-part series of studies of the topic. As part of SwAM Ocean, four studies exploring the conditions for lifting coastal communities out of poverty are being conducted. These four studies investigate institutional and infrastructure factors affecting blue growth and social development at local level in developing countries. The first study (WSP, 2020) analyses 17 cases of successful blue growth at community level, based on small-scale fisheries, aquaculture and conservation. The study is based on a literature review and expert interviews. It identifies co-management of natural resources, access to credit, technical skills, well-functioning post-harvest value chains and the presence of infrastructure such as fishing ports, docking and storage as being key to enabling local blue growth. In the second study a thematic review of scientific literature is conducted, and is presented in this report. Results of the review indicate that local blue growth is more likely in the presence of coherent and predictable blue-economy frameworks, and when stakeholders have adequate capacity and skills. National and international institutions and actors need to adapt blue-economy projects and policies to local contexts, support the development of well-functioning value chains and ensure that efficient environmental regulations are enforced. A spatial analysis exploring how basic infrastructure affects blue growth and socioeconomic development is presented in the third study (GroundTruth, 2021). It explores 11 rural coastal communities in the Western Indian Ocean region, and concludes that the presence of and access to roads, airports and electricity in coastal communities contribute to economic wellbeing. The key role played by strategic planning is also highlighted, indicating that strategically planned communities tend to feature higher levels of both economic and social wellbeing. The fourth study explores lessons learned from promotion of local blue growth in coastal communities in Sweden. Applying a case-study approach, it identifies enablers and barriers, along with strategies used for overcoming them, resulting in successful project outcomes. SwAM is the responsible Swedish government agency tasked with protecting, restoring and ensuring sustainable use of freshwater and ocean resources, including fisheries management. The work being carried out within the international development cooperation programme SwAM Ocean contributes to holistic marine management, blue growth and poverty alleviation in partner countries and regions. In parallel, knowledge gained from the SwAM Ocean collaboration enhances and improves our own understanding and management of Swedish aquatic resources. Ecosystem-based management, ocean literacy and cross-sectoral planning, including marine Enabling local blue growth in developing countries spatial planning, are examples of processes in which mutual learning is key in order to achieve sustainable management of the oceans in Sweden and at international level Swedish Agency for Marine and Water Management Published Contributing authors: Maria Göthberg, Linus Hammar, Gonçalo Carneiro, Ylva Mattsson and Marie-Laure Sundman Blå tillväxt – alltså att säkra ekonomiska intäkter och skapa socialt välbefinnande från ett hållbart användande av havets resurser – har väckt intresse hos många kust- och önationer runt om i världen, inklusive många utvecklingsländer. Närheten till ett innehållsrikt hav resulterar dock inte automatiskt i socioekonomisk utveckling i kustsamhällen. Det finns en stor mängd vetenskaplig litteratur som undersöker under vilka förhållanden ett samhälles tillgång till naturresurser faktiskt leder till lokal ekonomisk tillväxt. Denna studie är en närmare genomgång av den litteratur som specifikt studerar lokal blå tillväxt i utvecklingsländer. Studiens syfte är att identifiera under vilka förutsättningar ett lokalt användande av havets resurser leder till ökade inkomster och socioekonomiskt välbefinnande på lokal nivå. Mer specifikt strävar denna studie efter att kartlägga den infrastruktur och de institutionella faktorer som främjar lokal blå tillväxt i utvecklingsländer. Studien är en tematisk granskning av 90 vetenskapliga artiklar, vilket omfattar systematisk kartläggning, regressionsanalys och textanalys. Studien drar slutsatsen att ökade inkomster och socialt välbefinnande i utvecklingsländers kustsamhällen beror på tillgången till välfungerande värdekedjor och nivån av social utveckling. Resultaten visar också att de marina resursernas hållbarhet är avhängt kvaliteten i naturresursförvaltningen, graden av samstämmighet i politik och juridiska ramverk, och hur innehållet och betydelsen av dessa regelverk kommuniceras. Vidare visar studien hur en bristande naturresursförvaltning och oförenlighet mellan politik och juridik relaterar till lägre tillgångar och inkomster, samt en minskad sysselsättning. Studien identifierar även ett antal avgörande faktorer inom samhällsstyrningens typ och kvalitet med påverkan på den lokala blå tillväxten. Lokal blå tillväxt gynnas av samhällsstyrning som är samstämmig och tillförlitlig, av ledarskap som är dynamiskt och legitimt, och av en fungerande och effektiv administration. Det är också av stor vikt att de beslut som påverkar kustsamhällenas försörjning och sysselsättning anpassas till de lokala förhållandena, och att samhällena ges tillräcklig möjlighet att påverka dessa beslut. Kustsamhällens sociala utveckling beror på graden av social sammanhållning och en rättvis tillgång till marina resurser, samt individers och organisationers kapacitet och kunskap. En hög kapacitet är inte bara viktig inom den privata sektorn för att utveckla hållbara blå företag, utan också inom den offentliga sektorn för att utforma och genomföra en politik som är evidensbaserad och kontextanpassad. Lokal blå tillväxt gynnas även av förekomsten av välfungerande värdekedjor, öppna och tillgängliga marknader samt infrastruktur som underhålls och utvecklas. Baserat på dessa resultat följer åtta rekommendationer som riktar sig till både myndigheter och andra utvecklingsaktörer som arbetar för lokal blå tillväxt. Dessa rekommendationer beskrivs mer utförligt i kapitel 6. 1. Säkerställ att juridiska ramverk och politik som påverkar den blå ekonomin är sammanhängande, tydliga och förutsägbara 2. Gynna utvecklingen av välfungerande värdekedjor för produkter och tjänster inom den blå ekonomin. 3. Stöd etablerandet och utvecklingen av organisationer som verkar för blå tillväxt i lokalsamhällen. 4. Värdesätt betydelsen av ledarskap av hög kvalitet. 5. Involvera lokala samhällen i beslut som påverkar deras blå ekonomi. 6. Stärk kapacitet och tekniska kompetens hos individer och institutioner som verkar i den blå ekonomin. 7. Tillhandahåll och underhåll den infrastruktur som är nödvändig för lokal blå tillväxt. 8. Bygg lokal blå tillväxt med hjälp av hela verktygslådan – ovanstående rekommendationer behöver hanteras samtidigt för att skapa en gynnsam grogrund för lokal blå tillväxt Current 14.7 N/A Multi-organisational Method Specification of criteria
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- 2021
6. Molecular versus morphological data for benthic diatoms biomonitoring in Northern Europe freshwater and consequences for ecological status
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Bonnie Bailet, Satu Maaria Karjalainen, Alain Franc, Susanne C. Schneider, Agnès Bouchez, François Keck, Maria Kahlert, Jean-Marc Frigerio, Frédéric Rimet, Swedish University of Agricultural Sciences (SLU), Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL), Institut National de la Recherche Agronomique (INRA)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Biodiversité, Gènes & Communautés (BioGeCo), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB), from patterns to models in computational biodiversity and biotechnology (PLEIADE), Laboratoire Bordelais de Recherche en Informatique (LaBRI), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Biodiversité, Gènes & Communautés (BioGeCo), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut National de la Recherche Agronomique (INRA), Finnish Environment Institute (SYKE), Norwegian Institute for Water Research (NIVA), Stiftelsen Oscar och Lili Lamms Minne (http://www.stiftelsenlamm.a.se/), Swedish Agency for Marine and Water management, Plafrim, MCIA, Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de la Recherche Agronomique (INRA), Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Université Sciences et Technologies - Bordeaux 1-Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Université Sciences et Technologies - Bordeaux 1-Université Bordeaux Segalen - Bordeaux 2-Inria Bordeaux - Sud-Ouest, Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB), and Université de Bordeaux (UB)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Centre National de la Recherche Scientifique (CNRS)-Inria Bordeaux - Sud-Ouest
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0106 biological sciences ,rbcL ,Northern Europe ,Biology ,010603 evolutionary biology ,01 natural sciences ,järvet ,diatoms ,ympäristön tila ,03 medical and health sciences ,Biomonitoring ,Genetics ,piilevät ,Environmental impact assessment ,14. Life underwater ,ekologinen tila ,seuranta ,Bacillariophyta ,Molecular Biology ,biologiset menetelmät ,QH540-549.5 ,030304 developmental biology ,Nature and Landscape Conservation ,0303 health sciences ,Ecology ,Environmental assessment ,Environmental Sciences (social aspects to be 507) ,Ecological assessment ,Ion semiconductor sequencing ,DNA extraction ,6. Clean water ,pohjaeläimistö ,Microbiology (Microbiology in the medical area to be 30109) ,Water quality ,Benthic zone ,DNA-viivakoodit ,Metabarcoding ,lajinmääritys ,18S-V4 ,Animal Science and Zoology ,makea vesi ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Bioindicator ,joet ,bioindikaattorit - Abstract
International audience; Diatoms are known to be efficient bioindicators for water quality assessment because of their rapid response to environmental pressures and their omnipresence in water bodies. The identification of benthic diatoms communities in the biofilm, coupled with quality indices such as the Indice de polluosensibilité spécifique (IPS) can be used for biomonitoring purposes in freshwater. However, the morphological identification and counting of diatoms species under the microscope is time-consuming and requires extensive expertise to deal with a constantly evolving taxonomy. In response, a molecular-based and potentially more cost-effective method has been developed, coupling high-throughput sequencing and DNA metabarcoding. The method has already been tested for water quality assessment with diatoms in Central Europe. In this study, we applied both the traditional and molecular methods on 180 biofilms samples from Northern Europe (rivers and lakes of Fennoscandia and Iceland). The DNA metabarcoding data were obtained on two different DNA markers, the 18S-V4 and rbcL barcodes, with the NucleoSpin Soil kit for DNA extraction and sequenced on an Ion Torrent PGM platform. We assessed the ability of the molecular method to produce species inventories, IPS scores and ecological status class comparable to the ones generated by the traditional morphology-based approach. The two methods generated correlated but significantly different IPS scores and ecological status assessment. The observed deviations are explained by presence/absence and abundance discrepancies in the species inventories, mainly due to the incompleteness of the barcodes reference databases, primer bias and strictness of the bioinformatic pipeline. Abundance discrepancies are less common than presence/absence discrepancies but have a greater effect on the ecological assessment. Missing species in the reference databases are mostly acidophilic benthic diatoms species, typical of the low pH waters of Northern Europe. The two different DNA markers also generated significantly different ecological status assessments. The use of the 18S-V4 marker generates more species inventories discrepancies, but achieves an ecological assessment more similar to the traditional morphology-based method. Further development of the metabarcoding method is needed for its use in environmental assessment. For its application in Northern Europe, completion and curation of reference databases are necessary, as well as evaluation of the currently available bioinformatics pipelines. New indices, fitted for environmental biomonitoring, should also be developed directly from molecular data.
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- 2019
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7. Diat.barcode, an open-access curated barcode library for diatoms
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Martyn Kelly, Frédéric Rimet, Evgenuy Gusev, Agnès Bouchez, David G. Mann, Jonas Zimmermann, Martin Pfannkuchen, Valentin Vasselon, Rosa Trobajo, Maxim Kulikovskiy, Maria Kahlert, Yevhen Maltsev, Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL), Institut National de la Recherche Agronomique (INRA)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Russian Academy of Sciences [Moscow] (RAS), Swedish University of Agricultural Sciences (SLU), Independent, Royal Botanic Garden Edinburgh, Institute of Agrifood Research and Technology (IRTA), Rudjer Boskovic Institute [Zagreb], Free University of Berlin (FU), SYNTHESYS Project - European Community Research Infrastructure Action under the FP7 'Capacities' Program, Swedish Agency for Marine and Water Management, SLU's Environmental monitoring and assessment (EMA) program 'Lakes and watercourses', ussian Foundation for Basic Research (RFBR) 19-34-70016-mol_a_mos, Russian Science Foundation (RSF) 19-14-00320, Federal Ministry of Education and Research (German Barcode of Life 2 Diatoms (GBOL2)) 01LI1501E, COST (European Cooperation in Science and Technology) program CA15219, UK diatom barcoding project of the UK Environment Agency SC140024/R, Producció Animal, and Aigües Marines i Continentals
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0106 biological sciences ,0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Ribulose-Bisphosphate Carboxylase ,diatoms barcoding reference data base ,Sequencing data ,lcsh:Medicine ,Biological Systematics ,Barcode ,01 natural sciences ,DNA barcoding ,Article ,law.invention ,World Wide Web ,03 medical and health sciences ,law ,Databases, Genetic ,DNA Barcoding, Taxonomic ,Base sequence ,14. Life underwater ,lcsh:Science ,ComputingMilieux_MISCELLANEOUS ,Data Curation ,Gene Library ,Taxonomy ,Diatoms ,Multidisciplinary ,Data curation ,Base Sequence ,Geography ,010604 marine biology & hydrobiology ,lcsh:R ,Botany ,Environmental Sciences (social aspects to be 507) ,030104 developmental biology ,Genetic markers ,lcsh:Q ,Identification (biology) ,Lower cost ,Molecular ecology - Abstract
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems. Usually, diatoms are identified using characteristics of their exoskeleton morphology. DNA-barcoding is an alternative to this and the use of High-Throughput-Sequencing enables the rapid analysis of many environmental samples at a lower cost than analyses under microscope. However, to identify environmental sequences correctly, an expertly curated reference library is needed. Several curated libraries for protists exists; none, however are dedicated to diatoms. Diat.barcode is an open-access library dedicated to diatoms which has been maintained since 2012. Data come from two sources (1) the NCBI nucleotide database and (2) unpublished sequencing data of culture collections. Since 2017, several experts have collaborated to curate this library for rbcL, a chloroplast marker suitable for species-level identification of diatoms. For the latest version of the database (version 7), 605 of the 3482 taxonomical names originally assigned by the authors of the rbcL sequences were modified after curation. The database is accessible at https://www6.inra.fr/carrtel-collection_eng/Barcoding-database.
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- 2019
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8. Scientific, Technical and Economic Committee for Fisheries (STECF) – 62th Plenary Meeting Report (PLEN-19-03) (NB Report on Shark finning regulation)
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Ulrich, Clara, Catchpole, Thomas, Curtis, Hazel, Daskalov, Georgi, Doring, Ralf, Gascuel, Didier, Knittweis, Leyla, Lloret, Josep, Malvarosa, Loretta, Martín, Paloma, Motova, Arina, Murua, Hilario, Nord, Jenny, Prellezo, Raul, Raid, Tiit, Sabatella, Evelina, Sala, Antonello, Scarcella, Giuseppe, Soldo, Alen, Somarakis, Stylianos, Stransky, Christoph, Van Hoof, Luc, Technical University of Denmark [Lyngby] (DTU), Centre for Environment, Fisheries and Aquaculture Science [Lowestoft] (CEFAS), Bulgarian Academy of Sciences (BAS), Thünen Institute, Écologie et santé des écosystèmes (ESE), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Faculty of Science, Department of Biology (UNIVERSITY OF MALTA), University of Malta [Malta], INSTITUTE OF AQUATIC ECOLOGY UNIVERSITY OF GIRONA GIRONA ESP, Partenaires IRSTEA, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Fishery and Aquaculture Research Organisation (NISEA), CSIC Instituto de Ciencias del Mar, Sea Fish Industry Authority, Sea Fish Industry Authorit, AZTI - Tecnalia, The Swedish Agency of Marine and Water Management (SwAM), unidad des Investigacion Marina, AZTI, Estonian Marine Institute, University of Tartu, Istituto di Science Marine (ISMAR ), Consiglio Nazionale delle Ricerche (CNR), University of Split, HELLENIC CENTRE FOR MARINE RESEARCH INSITUTE OF MARINE BIOLOGICAL RESOURCES AND INLAND WATERS ATTICA, GRC, European Commission, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-AGROCAMPUS OUEST, and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
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Shark fisheries ,Shark finning regulation ,[SDV.SA.STP]Life Sciences [q-bio]/Agricultural sciences/Sciences and technics of fishery ,Fisheries ,Shark conservation ,European commission ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
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- 2019
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9. Faire mieux que la nature? The History of Eel Restocking in Europe
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Willem Dekker, Laurent Beaulaton, Swedish University of Agricultural Sciences (SLU), Office national de l'eau et des milieux aquatiques (ONEMA), Ministère de l'écologie, du développement durable et de l'énergie, Pôle Gest'Aqua, Institut National de la Recherche Agronomique (INRA)-Office national de l'eau et des milieux aquatiques (ONEMA), Ministère de l'écologie, du développement durable et de l'énergie-Ministère de l'écologie, du développement durable et de l'énergie, Unité Experimentale d'Ecologie et d'Ecotoxicologie Aquatique - U3E (Rennes, France) (U3E), Institut National de la Recherche Agronomique (INRA), Swedish Agency for Marine and Water Management, and French National Agency for Water and Aquatic Environments
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0106 biological sciences ,History ,[SDV]Life Sciences [q-bio] ,Geography, Planning and Development ,Economic shortage ,Environmental Science (miscellaneous) ,010603 evolutionary biology ,01 natural sciences ,technical development ,Arts and Humanities (miscellaneous) ,Environmental protection ,fishery ,14. Life underwater ,development and protection ,natural resources ,Stock (geology) ,Mode of transport ,Ecology ,010604 marine biology & hydrobiology ,bootlace ,international cooperation ,glass eel ,Eel ,Anguilla ,stocking ,Fishery ,restocking ,Geography ,enhancement and recovery ,Technical innovation ,Fish and Aquacultural Science - Abstract
Erratum: Page 262 of this article erroneously refers to Louis Riffardeau Baron de Riviére (1817-1890) as the inventor of eel restocking. This conflates the names of two people living in the same place and period: Baron Louis de Riviére (1789-1871) and Duke Louis Riffardeau de Riviére (1817-1890). While the Baron was the inventor of eel restocking, the Duke was not involved. The article thus incorrectly speculates about the initial transports from St. Gilles in the Camargue (where the Baron was mayor) to lakes around Vernais in Cher (owned by the Duke). Apart from that speculation on page 262 (only), the content of the article is not further affected by this error. Young eel, recruiting from the ocean towards Europe, are most abundant along the Atlantic coast of France. Since 1840, attempts have been made to redistribute them from the areas of highest abundance to other countries and farther inland. This 'restocking' has been troubled by technical constraints (e.g. mode of transport and maximum distance eel can be shipped alive), wars (e.g. the Franco-Prussian War and World Wars One and Two) and, in recent decades, by shortage of supply due to the general decline of the eel stock all across Europe. Though objectives and procedures have changed considerably over the years, the recurring aim has been to increase production and, in that way, to 'faire mieux que la nature'. We document the historical development of these efforts from their inception, and contrast the achievements to the objectives. Except for the 1952-1990 period in Eastern Europe, restocking has probably added only slightly to the natural production. As successful as restocking might have been locally, it has not markedly changed the overall trends and distribution patterns or halted the general decline of the stock and fishery. Poor post-evaluation, frequent technical innovation and a constant renewal of the countries and people involved have kept the promise of a better future alive for 175 years.
- Published
- 2016
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10. Spatio-temporal composition and dynamics of zooplankton in the Kalmar Sound (western Baltic Sea) in 2009-2010
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Diaz-Gil, Carlos, Werner, Malin, Lovgren, Olof, Kaljuste, Olavi, Grzyb, Anna, Piotr Margonski, Casini, Michele, Swedish Agency for Marine and Water Management, and Swedish Environmental Protection Agency
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Ecology - Abstract
In pelagic food webs, zooplankton is the link between lower and higher trophic levels. It is thus essential to know how the zooplankton community structure varies with its environment. We investigated the seasonal and spatial variation in the zooplankton diversity and community structure during two consecutive years in the Kalmar Sound, along the Swedish east coast, an area with a strong bathymetric gradient and of high ecological importance for e.g. commercial fish species. Two zooplankton communities were identified in the area: a coastal/estuarine community in the south and an open-water community in the north. They were separated mainly by differing salinity and temperature conditions. Biodiversity increased from spring to autumn and was higher in the open waters. © 2014., C. Díaz-Gil, M. Werner, O. Lövgren, O. Kaljuste and M. Casini were partially funded by the Swedish PLAN FISH project, financed by the Swedish Environmental Protection Agency and the Swedish Agency for Marine and Water Management. C. Díaz-Gil was also funded by the EU Erasmus Program for international mobility of students
- Published
- 2014
11. Invasive Buttonweed Cotula coronopifolia (Asteraceae) Is Halotolerant and Has High Potential for Dispersal by Endozoochory.
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Sánchez-García R, Green AJ, Tomasson L, Hortas F, and Ortiz MA
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Buttonweed ( Cotula coronopifolia ) is native to South Africa but invasive in wetlands in Europe, North America, and Australasia, where it excludes native plants. Despite being dry-fruited, field studies suggest migratory waterbirds can disperse its seeds via gut passage (endozoochory), aiding its expansion. To explore the potential for endozoochory in different regions and habitats, we collected seeds from six populations in Spain, Sweden, and the UK. Germination was tested under different salinity levels (0, 5, 10, 15 g/L) and simulated gut passage treatments: scarification, acidification, or both. No germination occurred at 15 g/L. Higher salinity reduced and delayed germination, but full gut passage treatment (i.e., both scarification and acidification) increased germinability and accelerated germination. Scarification or acid treatment alone resulted in intermediate germination patterns. There were significant salinity × population and gut passage × population interactions on germinability. The acceleration effect of gut passage on germination was stronger at 5-10 g/L than at 0 g/L. This study highlights how migratory birds can facilitate the spread of alien plants introduced by humans. Endozoochory by waterbirds is an understudied mechanism for the long-distance dispersal of dry-fruited alien plants. Further research on C. coronopifolia , including population genetics, is necessary to understand dispersal mechanisms and facilitate management strategies.
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- 2024
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12. Lake hydromorphology assessment in Europe: Where are we 20 years after the adoption of the Water Framework Directive?
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Argillier C, Carriere A, Wynne C, Hellsten S, Vartia K, and Poikane S
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- Environmental Monitoring methods, Ecosystem, Europe, Surveys and Questionnaires, Lakes, Water
- Abstract
The characterization of lake hydromorphology is crucial to understand the dynamics of biodiversity. In Europe, it is also a regulatory requirement of the Water Framework Directive. However, according to the literature, few methods include this characterization. The aim of this study is to review the state of the art of the methods currently used or under development in European countries to assess lake hydromorphological status for the implementation of the WFD. Our analysis is based on responses to a questionnaire distributed to national experts on hydromorphology of the 28 countries implementing the WFD. Our results highlighted significant progress in the assessment of hydromorphological features and processes. Water level regime, through the range of water flow or existing water management, and structure of the shore zone through macrophytes and substrate characteristics or measurement of lateral connectivity, are the most frequently assessed features. Stratification, surface/groundwater connection and planform pattern are the lake features most frequently omitted from the methods. However, in most of the countries, the development of methods was still in progress to meet the WFD requirement. Definition of reference condition is a central component of all WFD compliant assessment tools but this is a challenge particularly in the assessment of hydromorphological alteration of reservoirs. Similarly, demonstrating strong links between hydromorphological indicators and biological quality elements remains a challenge with many knowledge gaps still evident. These results highlight the need for rapid collection of new environmental data and the need for conceptual and applied research to make methodological progress in assessing lake hydromorphology and ensuring habitat quality., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2023
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13. Ecological changes as a plausible explanation for differences in uptake of contaminants between European perch and eelpout in a coastal area of the Baltic Sea.
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Hanson N, Larsson Å, Parkkonen J, Faxneld S, Nyberg E, Bignert A, Henning HE, Bryhn A, Olsson J, Karlson AML, and Förlin L
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- Animals, Aquatic Organisms drug effects, Biomarkers metabolism, Ecosystem, Mercury analysis, Oceans and Seas, Polychaeta drug effects, Polychaeta metabolism, Sweden, Water Pollutants, Chemical analysis, Biological Monitoring methods, Mercury metabolism, Perches metabolism, Seawater chemistry, Water Pollutants, Chemical metabolism
- Abstract
Unexpected increasing trends in the concentration of contaminants in European perch (Perca fluviatilis) and in activity of ethoxyresorufin-O-deethylase (EROD) in European perch and eelpout (Zoarces viviparus) have been observed at a Swedish coastal reference site. This study uses data from different sources to investigate plausible explanations. The results showed that a change in diet and an improved overall condition coincide with an increase in mercury in European perch. Furthermore, an increase in several organic contaminants in European perch coincided with the introduction of an invasive deep-burrowing polychaete, which likely contributed to the release of contaminants through bioturbation. The increase in EROD-activity in both species seems to be related to contaminants that reach the fish through the water rather than the diet. The results show that for contaminants that are taken up via the diet, trends in contamination can be opposite for different species of fish in the same area., (Copyright © 2020. Published by Elsevier B.V.)
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- 2020
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14. Cumulative impact assessment for ecosystem-based marine spatial planning.
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Hammar L, Molander S, Pålsson J, Schmidtbauer Crona J, Carneiro G, Johansson T, Hume D, Kågesten G, Mattsson D, Törnqvist O, Zillén L, Mattsson M, Bergström U, Perry D, Caldow C, and Andersen JH
- Abstract
Claims for ocean space are growing while marine ecosystems suffer from centuries of insufficient care. Human pressures from runoff, atmospheric emissions, marine pollution, fishing, shipping, military operations and other activities wear on habitats and populations. Ecosystem-based marine spatial planning (MSP) has emerged worldwide as a strategic instrument for handling conflicting spatial claims among competing sectors and the environment. The twofold objective of both boosting the blue economy and protecting the environment is challenging in practice and marine planners need decision support. Cumulative Impact Assessment (CIA) was originally developed to provide an overview of the human imprint on the world's ocean ecosystems. We have now added a scenario component to the CIA model and used it within Swedish ecosystem-based MSP. This has allowed us to project environmental impacts for different planning alternatives throughout the planning process, strengthening the integration of environmental considerations into strategic decision-making. Every MSP decision may entail a local shift of environmental impact, causing positive or negative consequences for ecosystem components. The results from Swedish MSP in the North Sea and Baltic Sea illustrate that MSP certainly has the potential to lower net cumulative environmental impact, both locally and across sea basins, as long as environmental values are rated high and prevailing pressures derive from activities that are part of MSP. By synthesizing innumerous data into comprehensible decision support that informs marine planners of the likely environmental consequences of different options, CIA enables ecosystem-based MSP in practice., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2020
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15. Effects of an invasive polychaete on benthic phosphorus cycling at sea basin scale: An ecosystem disservice.
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Sandman AN, Näslund J, Gren IM, and Norling K
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- Animals, Baltic States, Biomass, Geologic Sediments analysis, Nitrogen analysis, Osmolar Concentration, Oxygen analysis, Phosphorus adverse effects, Water Pollution, Chemical analysis, Water Pollution, Chemical economics, Ecosystem, Eutrophication, Introduced Species, Phosphorus metabolism, Polychaeta physiology, Seawater analysis, Seawater parasitology, Water Pollution, Chemical prevention & control
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Macrofaunal activities in sediments modify nutrient fluxes in different ways including the expression of species-specific functional traits and density-dependent population processes. The invasive polychaete genus Marenzelleria was first observed in the Baltic Sea in the 1980s. It has caused changes in benthic processes and affected the functioning of ecosystem services such as nutrient regulation. The large-scale effects of these changes are not known. We estimated the current Marenzelleria spp. wet weight biomass in the Baltic Sea to be 60-87 kton (95% confidence interval). We assessed the potential impact of Marenzelleria spp. on phosphorus cycling using a spatially explicit model, comparing estimates of expected sediment to water phosphorus fluxes from a biophysical model to ecologically relevant experimental measurements of benthic phosphorus flux. The estimated yearly net increases (95% CI) in phosphorous flux due to Marenzelleria spp. were 4.2-6.1 kton based on the biophysical model and 6.3-9.1 kton based on experimental data. The current biomass densities of Marenzelleria spp. in the Baltic Sea enhance the phosphorus fluxes from sediment to water on a sea basin scale. Although high densities of Marenzelleria spp. can increase phosphorus retention locally, such biomass densities are uncommon. Thus, the major effect of Marenzelleria seems to be a large-scale net decrease in the self-cleaning capacity of the Baltic Sea that counteracts human efforts to mitigate eutrophication in the region.
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- 2018
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16. Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance.
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Larsson DGJ, Andremont A, Bengtsson-Palme J, Brandt KK, de Roda Husman AM, Fagerstedt P, Fick J, Flach CF, Gaze WH, Kuroda M, Kvint K, Laxminarayan R, Manaia CM, Nielsen KM, Plant L, Ploy MC, Segovia C, Simonet P, Smalla K, Snape J, Topp E, van Hengel AJ, Verner-Jeffreys DW, Virta MPJ, Wellington EM, and Wernersson AS
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- Animals, Anti-Bacterial Agents pharmacology, Bacterial Infections microbiology, Humans, Bacteria drug effects, Drug Resistance, Bacterial, Environmental Microbiology
- Abstract
There is growing understanding that the environment plays an important role both in the transmission of antibiotic resistant pathogens and in their evolution. Accordingly, researchers and stakeholders world-wide seek to further explore the mechanisms and drivers involved, quantify risks and identify suitable interventions. There is a clear value in establishing research needs and coordinating efforts within and across nations in order to best tackle this global challenge. At an international workshop in late September 2017, scientists from 14 countries with expertise on the environmental dimensions of antibiotic resistance gathered to define critical knowledge gaps. Four key areas were identified where research is urgently needed: 1) the relative contributions of different sources of antibiotics and antibiotic resistant bacteria into the environment; 2) the role of the environment, and particularly anthropogenic inputs, in the evolution of resistance; 3) the overall human and animal health impacts caused by exposure to environmental resistant bacteria; and 4) the efficacy and feasibility of different technological, social, economic and behavioral interventions to mitigate environmental antibiotic resistance.
1 ., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2018
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17. A tool for simulating collision probabilities of animals with marine renewable energy devices.
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Schmitt P, Culloch R, Lieber L, Molander S, Hammar L, and Kregting L
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- Algorithms, Animals, Models, Theoretical, Renewable Energy, Seawater
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The mathematical problem of establishing a collision probability distribution is often not trivial. The shape and motion of the animal as well as of the the device must be evaluated in a four-dimensional space (3D motion over time). Earlier work on wind and tidal turbines was limited to a simplified two-dimensional representation, which cannot be applied to many new structures. We present a numerical algorithm to obtain such probability distributions using transient, three-dimensional numerical simulations. The method is demonstrated using a sub-surface tidal kite as an example. Necessary pre- and post-processing of the data created by the model is explained, numerical details and potential issues and limitations in the application of resulting probability distributions are highlighted.
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- 2017
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18. Emergence of a new rhabdovirus associated with mass mortalities in eelpout (Zoarces viviparous) in the Baltic Sea.
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Axén C, Hakhverdyan M, Boutrup TS, Blomkvist E, Ljunghager F, Alfjorden A, Hagström Å, Olesen NJ, Juremalm M, Leijon M, and Valarcher JF
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- Animals, Central Nervous System virology, Phylogeny, Rhabdoviridae genetics, Rhabdoviridae Infections virology, Sequence Analysis, RNA veterinary, Sweden, Fish Diseases virology, Genome, Viral, Perciformes, Rhabdoviridae physiology, Rhabdoviridae Infections veterinary
- Abstract
We report the first description of a new Rhabdoviridae tentatively named eelpout rhabdovirus (EpRV genus Perhabdovirus). This virus was associated with mass mortalities in eelpout (Zoarces viviparous, Linnaeus) along the Swedish Baltic Sea coast line in 2014. Diseased fish showed signs of central nervous system infection, and brain lesions were confirmed by histology. A cytopathogenic effect was observed in cell culture, but ELISAs for the epizootic piscine viral haemorrhagic septicaemia virus (VHSV), infectious pancreas necrosis virus (IPNV), infectious haematopoietic necrosis virus (IHNV) and spring viraemia of carp virus (SVCV) were negative. Further investigations by chloroform inactivation, indirect fluorescence antibody test and electron microscopy indicated the presence of a rhabdovirus. By deep sequencing of original tissue suspension and infected cell culture supernatant, the full viral genome was assembled and we confirmed the presence of a rhabdovirus with 59.5% nucleotide similarity to the closest relative Siniperca chuatsi rhabdovirus. The full-genome sequence of this new virus, eelpout rhabdovirus (EpRV), has been deposited in GenBank under accession number KR612230. An RT-PCR based on the L-gene sequence confirmed the presence of EpRV in sick/dead eelpout, but the virus was not found in control fish. Additional investigations to characterize the pathogenicity of EpRV are planned., (© 2016 John Wiley & Sons Ltd.)
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- 2017
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19. Alien species: Pre-emptive action against EU invasives.
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Näslund J and Lettevall E
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- Biodiversity, Politics, Risk Assessment, European Union, Introduced Species legislation & jurisprudence
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- 2016
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20. A rapid and inexpensive DNA extraction protocol for oysters.
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Anglès d'Auriac MB, Norling P, and Rinde E
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- Animals, Polymerase Chain Reaction, DNA isolation & purification, Ostreidae genetics
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- 2016
- Full Text
- View/download PDF
21. Mapping Fishing Effort through AIS Data.
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Natale F, Gibin M, Alessandrini A, Vespe M, and Paulrud A
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- European Union, Fisheries legislation & jurisprudence, Fisheries methods, Satellite Communications, Data Collection methods, Fisheries statistics & numerical data, Geographic Mapping, Ships
- Abstract
Several research initiatives have been undertaken to map fishing effort at high spatial resolution using the Vessel Monitoring System (VMS). An alternative to the VMS is represented by the Automatic Identification System (AIS), which in the EU became compulsory in May 2014 for all fishing vessels of length above 15 meters. The aim of this paper is to assess the uptake of the AIS in the EU fishing fleet and the feasibility of producing a map of fishing effort with high spatial and temporal resolution at European scale. After analysing a large AIS dataset for the period January-August 2014 and covering most of the EU waters, we show that AIS was adopted by around 75% of EU fishing vessels above 15 meters of length. Using the Swedish fleet as a case study, we developed a method to identify fishing activity based on the analysis of individual vessels' speed profiles and produce a high resolution map of fishing effort based on AIS data. The method was validated using detailed logbook data and proved to be sufficiently accurate and computationally efficient to identify fishing grounds and effort in the case of trawlers, which represent the largest portion of the EU fishing fleet above 15 meters of length. Issues still to be addressed before extending the exercise to the entire EU fleet are the assessment of coverage levels of the AIS data for all EU waters and the identification of fishing activity in the case of vessels other than trawlers.
- Published
- 2015
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22. Past, current and future Swedish freshwater monitoring from an authority perspective.
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Håkansson B and Notter M
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- Environmental Monitoring history, History, 20th Century, History, 21st Century, Sweden, Time Factors, Fresh Water analysis
- Published
- 2014
- Full Text
- View/download PDF
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