1. Determination of HLA‐A, ‐C, ‐B, ‐DRB1 allele and haplotype frequency in Japanese population based on family study
- Author
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N. Ikeda, N Fujii, K Hayashi, S. Suegami, Hidenori Tanaka, T. Tsujino, T. Futagami, Y. Miyazaki, Derek Middleton, Y. Kusunoki, Hiroh Saji, H. Kojima, and M. Nishikawa
- Subjects
Adult ,Male ,Linkage disequilibrium ,Immunology ,Population ,Gene Expression ,HLA-C Antigens ,Human leukocyte antigen ,Biology ,Biochemistry ,Linkage Disequilibrium ,Asian People ,Gene Frequency ,HLA-DQ Antigens ,Genetics ,Humans ,Immunology and Allergy ,Family ,family study ,haplotype frequency ,Child ,education ,Allele frequency ,Alleles ,Likelihood Functions ,education.field_of_study ,HLA-A Antigens ,Japanese population ,Histocompatibility Testing ,Haplotype ,Original Articles ,General Medicine ,Tissue Donors ,Pedigree ,HLA-A ,Transplantation ,Minor allele frequency ,Haplotypes ,HLA-B Antigens ,Female ,Original Article ,allele frequency ,HLA-DRB1 Chains ,human leucocyte antigen - Abstract
The present study investigates the human leucocyte antigen (HLA) allele and haplotype frequencies in Japanese population. We carried out the frequency analysis in 5824 families living across Japanese archipelago. The studied population has mainly been typed for the purpose of transplant, especially the hematopoietic stem cell transplantation (HSCT). We determined HLA class I (A, B, and C) and HLA class II (DRB1) using Luminex technology. The haplotypes were directly counted by segregation. A total of 44 HLA‐A, 29 HLA‐C, 75 HLA‐B, and 42 HLA‐DRB1 alleles were identified. In the HLA haplotypes of A‐C‐B‐DRB1 and C‐B, the pattern of linkage disequilibrium peculiar to Japanese population has been confirmed. Moreover, the haplotype frequencies based on family study was compared with the frequencies estimated by maximum likelihood estimation (MLE), and the equivalent results were obtained. The allele and haplotype frequencies obtained in this study could be useful for anthropology, transplantation therapy, and disease association studies.
- Published
- 2015
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