7 results on '"Tasha Padilla"'
Search Results
2. Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance
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Debra A. Wadford, Nikki Baumrind, Elizabeth F. Baylis, John M. Bell, Ellen L. Bouchard, Megan Crumpler, Eric M. Foote, Sabrina Gilliam, Carol A. Glaser, Jill K. Hacker, Katya Ledin, Sharon L. Messenger, Christina Morales, Emily A. Smith, Joel R. Sevinsky, Russell B. Corbett-Detig, Joseph DeRisi, Kathleen Jacobson, the COVIDNet Consortium, Summer Adams, Phacharee Arunleung, Matthew Bacinskas, Cynthia Bernas, Ricardo Berumen, Brandon Brown, Teal Bullick, Lyndsey Chaille, Alice Chen, Giorgio Cosentino, Yocelyn Cruz, Nick D’Angelo, Mojgan Deldari, Alex Espinosa, Ambar Espinoza, Shiffen Getabecha, Madeleine Glenn, Bianca Gonzaga, Ydelita Gonzales, Melanie Greengard, Hugo Guevara, Kim Hansard, April Hatada, Monica Haw, Thalia Huynh, Chantha Kath, Paul B. Kimsey, Deidra Lemoine, Ruth Lopez, Blanca Molinar, Samantha Munoz, Robert Nakamura, Nichole Osugi, Tasha Padilla, Chao-Yang Pan, Mayuri V. Panditrao, Chris Preas, Will Probert, Alexa Quintana, Maria Uribe-Fuentes, Mayra Ramirez, Clarence Reyes, Estela Saguar, Maria Salas, Ioana Seritan, Brandon Stavig, Hilary Tamnanchit, Serena Ting, Cindy Wong, Chelsea Wright, Shigeo Yagi, Venice Servellita, Alicia Sotomayor-Gonzalez, Charles Y. Chiu, Isabel Bjork, Joshua Kapp, Anouk van den Bout, Ellen Kephart, Mawadda Alnaeeli, Hau-Ling Poon, Scott Topper, Marzieh Shafii, Sara Sowko, Stephanie Trammell, Erik Wolfsohn, Patrick Ayscue, Amy Kistler, Emily Crawford, Cristina Tato, Valeria Arboledaz, Eleazar Eskin, Laila M. Sathe, Jacek Skarbinski, Abigail Duque, Jeffrey Schapiro, Ivy Yeung, Rama Ghatti, Zahra Shajani-Yi, Jacob M. Garrigues, Nicole Green, Peera Hemarajata, Carlos Anaya, Donna Ferguson, Beatrix Kapuszinsky, Favian Ramirez, Felipe Sta Agueda, Julia Wolfe, David Haussler, Marc Perry, Jakob McBroome, Nhi Duong, Deborah Forester, Anthony Gonzalez, Maria J. Victorio, Anna Liza M. Manlutac, Jeremy Corrigan, Nicholas S. Rhoades, Lina Castro, Godfred Masinde, Harmeet Kaur, Monica Paniagua-Alexander, Katrina G. Erwin, Glen Miller, Frances N. Sidhu, Morris Jones, Sangita Kothari, Christopher Ngo, Brandon Bonin, Daniel Castillo, Rensen Khoshabian, Kristian Andersen, Mark Zeller, Lisa Critchett, Carlos Gonzalez, Iryna V. Goraichuk, Rachel Rees, Frank Ambrosio, Curtis J. Kapsak, Kevin G. Libuit, Michelle R. Scribner, Sage M. Wright, Vanessa B. Cadiz, Denise Lopez, Matthew Rosman, Bryan Bach, Stacia Wyman, Charlotte Acharya, Ryan Davis, Richard Michelmore, Melanie Oakes, Suzanne Sandmeyer, Kathy Borkovich, Clay H. Clark, Holly Clark, Brandon Le, Peter De Hoff, Kristen Jepsen, Rob Knight, Louise C. Laurent, Zack Aralis, Carolina Arias, Varuzhan Balasanyan, Mark Duhon, Xinmin Li, Eric Chow, Nicole Leung, Delsy Martinez, Tyler T. Miyasaki, Ashlee Clow, Jared Hoffman, and Thomas Rush
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SARS-CoV-2 ,genomic surveillance ,COVID-19 ,whole genome sequencing ,cloud-based computing ,data management ,Public aspects of medicine ,RA1-1270 - Abstract
IntroductionThe SARS-CoV-2 pandemic represented a formidable scientific and technological challenge to public health due to its rapid spread and evolution. To meet these challenges and to characterize the virus over time, the State of California established the California SARS-CoV-2 Whole Genome Sequencing (WGS) Initiative, or “California COVIDNet”. This initiative constituted an unprecedented multi-sector collaborative effort to achieve large-scale genomic surveillance of SARS-CoV-2 across California to monitor the spread of variants within the state, to detect new and emerging variants, and to characterize outbreaks in congregate, workplace, and other settings.MethodsCalifornia COVIDNet consists of 50 laboratory partners that include public health laboratories, private clinical diagnostic laboratories, and academic sequencing facilities as well as expert advisors, scientists, consultants, and contractors. Data management, sample sourcing and processing, and computational infrastructure were major challenges that had to be resolved in the midst of the pandemic chaos in order to conduct SARS-CoV-2 genomic surveillance. Data management, storage, and analytics needs were addressed with both conventional database applications and newer cloud-based data solutions, which also fulfilled computational requirements.ResultsRepresentative and randomly selected samples were sourced from state-sponsored community testing sites. Since March of 2021, California COVIDNet partners have contributed more than 450,000 SARS-CoV-2 genomes sequenced from remnant samples from both molecular and antigen tests. Combined with genomes from CDC-contracted WGS labs, there are currently nearly 800,000 genomes from all 61 local health jurisdictions (LHJs) in California in the COVIDNet sequence database. More than 5% of all reported positive tests in the state have been sequenced, with similar rates of sequencing across 5 major geographic regions in the state.DiscussionImplementation of California COVIDNet revealed challenges and limitations in the public health system. These were overcome by engaging in novel partnerships that established a successful genomic surveillance program which provided valuable data to inform the COVID-19 public health response in California. Significantly, California COVIDNet has provided a foundational data framework and computational infrastructure needed to respond to future public health crises.
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- 2023
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3. Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017
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W. Allan Nix, Christina J. Castro, Chao-Yang Pan, Rachel L. Marine, Thalia Huynh, Alice Chen, Debra A. Wadford, Terry Fei Fan Ng, and Tasha Padilla
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Whole genome sequencing ,0303 health sciences ,Echovirus ,Strain (chemistry) ,Cerebrospinal fluid specimen ,viruses ,Genome Sequences ,virus diseases ,Aseptic meningitis ,Biology ,medicine.disease_cause ,Disease cluster ,medicine.disease ,Virology ,3. Good health ,Human enterovirus ,03 medical and health sciences ,0302 clinical medicine ,Immunology and Microbiology (miscellaneous) ,Genetics ,medicine ,030212 general & internal medicine ,Molecular Biology ,030304 developmental biology - Abstract
We report the nearly complete genome sequence of a human enterovirus, a strain of echovirus 30, obtained from a cerebrospinal fluid specimen from a teenaged patient with aseptic meningitis in September 2017.
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- 2019
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4. Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017
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Debra A. Wadford, Terry Fei Fan Ng, W. Allan Nix, Chao-Yang Pan, Shigeo Yagi, Tasha Padilla, and Rachel L. Marine
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0301 basic medicine ,Respiratory illness ,030106 microbiology ,Biology ,medicine.disease_cause ,Genome ,Virology ,Article ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,Immunology and Microbiology (miscellaneous) ,Genotype ,Genetics ,medicine ,Rhinovirus ,Respiratory system ,Molecular Biology - Abstract
We report here two genome sequences of a newly designated rhinovirus genotype, RV-C56, which were obtained from respiratory specimens of three patients with acute respiratory illness in 2016 and 2017. To our knowledge, these sequences represent the first near-complete genomes for RV-C56 strains.
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- 2018
5. Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017
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Chao-Yang Pan, Shigeo Yagi, Rachel L. Marine, Debra A. Wadford, Tasha Padilla, Terry Fei Fan Ng, Linda S. Lewis, and William A. Nix
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0301 basic medicine ,Whole genome sequencing ,geography ,Respiratory illness ,geography.geographical_feature_category ,030106 microbiology ,Outbreak ,Biology ,medicine.disease_cause ,Virology ,Butte ,03 medical and health sciences ,030104 developmental biology ,Viruses ,Genetics ,medicine ,Rhinovirus ,Molecular Biology ,Sequence (medicine) - Abstract
Here, we report the full coding sequence of rhinovirus C47 (RV-C47), obtained from a patient respiratory sample collected during an acute respiratory illness investigation in Butte County, California, in January 2017. This is the first whole-genome sequence of RV-C47 to be reported.
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- 2018
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6. Acute Flaccid Myelitis of Unknown Etiology in California, 2012-2015
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Anna Clayton, Patrick Ayscue, Jonathan B. Strober, James Watt, Heather Sheriff, Rose Glenn-Finer, Charles Y. Chiu, Kathleen Harriman, Emmanuelle Waubant, Grace M. Aldrovandi, Carol A. Glaser, Shigeo Yagi, Tasha Padilla, Keith Van Haren, Debra A. Wadford, and Dongxiang Xia
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myalgia ,Male ,Pediatrics ,medicine.medical_specialty ,Flaccid paralysis ,Adolescent ,Myelitis ,medicine.disease_cause ,California ,Young Adult ,Age Distribution ,Interquartile range ,medicine ,Humans ,Sex Distribution ,Child ,Retrospective Studies ,Motor Neurons ,Plasma Exchange ,business.industry ,Electromyography ,Incidence (epidemiology) ,Incidence ,Immunoglobulins, Intravenous ,General Medicine ,Recovery of Function ,medicine.disease ,Magnetic Resonance Imaging ,Acute flaccid myelitis ,Surgery ,Child, Preschool ,Injections, Intravenous ,Etiology ,Enterovirus ,Muscle Hypotonia ,Female ,Steroids ,medicine.symptom ,business - Abstract
Importance There has been limited surveillance for acute flaccid paralysis in North America since the regional eradication of poliovirus. In 2012, the California Department of Public Health received several reports of acute flaccid paralysis cases of unknown etiology. Objective To quantify disease incidence and identify potential etiologies of acute flaccid paralysis cases with evidence of spinal motor neuron injury. Design, Setting, and Participants Case series of acute flaccid paralysis in patients with radiological or neurophysiological findings suggestive of spinal motor neuron involvement reported to the California Department of Public Health with symptom onset between June 2012 and July 2015. Patients meeting diagnostic criteria for other acute flaccid paralysis etiologies were excluded. Cerebrospinal fluid, serum samples, nasopharyngeal swab specimens, and stool specimens were submitted to the state laboratory for infectious agent testing. Main Outcomes and Measures Case incidence and infectious agent association. Results Fifty-nine cases were identified. Median age was 9 years (interquartile range [IQR], 4-14 years; 50 of the cases were younger than 21 years). Symptoms that preceded or were concurrent included respiratory or gastrointestinal illness (n = 54), fever (n = 47), and limb myalgia (n = 41). Fifty-six patients had T2 hyperintensity of spinal gray matter on magnetic resonance imaging and 43 patients had cerebrospinal fluid pleocytosis. During the course of the initial hospitalization, 42 patients received intravenous steroids; 43, intravenous immunoglobulin; and 13, plasma exchange; or a combination of these treatments. Among 45 patients with follow-up data, 38 had persistent weakness at a median follow-up of 9 months (IQR, 3-12 months). Two patients, both immunocompromised adults, died within 60 days of symptom onset. Enteroviruses were the most frequently detected pathogen in either nasopharynx swab specimens, stool specimens, serum samples (15 of 45 patients tested). No pathogens were isolated from the cerebrospinal fluid. The incidence of reported cases was significantly higher during a national enterovirus D68 outbreak occurring from August 2014 through January 2015 (0.16 cases per 100 000 person-years) compared with other monitoring periods (0.028 cases per 100 000 person-years;P Conclusions and Relevance In this series of patients identified in California from June 2012 through July 2015, clinical manifestations indicated a rare but distinct syndrome of acute flaccid paralysis with evidence of spinal motor neuron involvement. The etiology remains undetermined, most patients were children and young adults, and motor weakness was prolonged.
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- 2016
7. Rhinovirus Associated With Severe Lower Respiratory Tract Infections in Children
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Tasha Padilla, Carol A. Glaser, David Kiang, Shigeo Yagi, Erica J. Boston, Sharon Messenger, Janice K. Louie, Arup Roy-Burman, Lilly Guardia-LaBar, Ann Petru, and David P. Schnurr
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Microbiology (medical) ,medicine.medical_specialty ,Adolescent ,Rhinovirus ,Pneumonia, Viral ,Intensive Care Units, Pediatric ,medicine.disease_cause ,Polymerase Chain Reaction ,Intensive care ,Internal medicine ,Lower respiratory tract infection ,Pneumonia, Mycoplasma ,Humans ,Medicine ,Child ,Picornaviridae Infections ,Respiratory tract infections ,business.industry ,Respiratory disease ,Infant ,Common cold ,medicine.disease ,Mycoplasma pneumoniae ,respiratory tract diseases ,Pneumonia ,Infectious Diseases ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Immunology ,Respiratory virus ,business - Abstract
Rhinovirus is a respiratory virus most typically associated with the common cold and asthma exacerbations, and has not traditionally been considered to play a major role in severe lower respiratory tract infections (LRTIs). As part of a surveillance program for respiratory pathogens of public health importance, children consecutively admitted to intensive care for LRTI at a large tertiary children's hospital were tested with polymerase chain reaction for 11 respiratory viruses and Mycoplasma pneumoniae from February 21 to October 31, 2007; 43 cases were enrolled and rhinovirus was the most frequently detected pathogen, with 21 (49%) positive. Rhinovirus cases frequently were young (median age, 1.4 years [range, 44 days-15 years]), hospitalized for pneumonia (10; 48%), had chronic underlying illnesses (15; 71%), had abnormal chest radiographs (18; 86%), required mechanical ventilation (12; 57%), and had prolonged hospitalization (median length, 7 days [range, 1-29 days]). Coinfection with other viruses or bacteria was common (10; 47%). Rhinovirus may be associated with more severe LRTI in children than previously reported, particularly in the noninfluenza, nonrespiratory syncytial virus season.
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- 2009
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