43 results on '"Tasleem M"'
Search Results
2. Nitric oxide triggered defense network in wheat: Augmenting tolerance and grain-quality related traits under heat-induced oxidative damage
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Kumar, R.R., Tasleem, M., Jain, M., Ahuja, S., Goswami, S., Bakshi, S., Jambhulkar, S., Singh, S.D., Singh, G.P., Pathak, H., Viswanathan, C., and Praveen, S.
- Published
- 2019
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3. EFFECT OF MORINGA OLEIFERA LEAVES ON HEMATOLOGICAL AND SERUM CHEMISTRY ATTRIBUTES OF APPARENTLY HEALTHY RABBIT DOES.
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Farooq, U., Zia-Ur-Rehman, Sharif, M., Lashari, M. H., Idris, M., Hussain, M., and Tasleem, M. W.
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MORINGA oleifera ,KIDNEY function tests ,BLOOD urea nitrogen ,LIVER function tests ,RABBITS ,ERYTHROCYTES - Abstract
The study was designed to assess the effect of Moringa oleifera leaf extract on various hematological and serum chemistry attributes (liver and kidney function test enzymes) of apparently healthy rabbit does (n=24), either positive or negative. The animals were divided in four groups namely A, B, C and D (n=6 rabbits/group). First group was considered as control group provided with basal diet and water without any supplementation. Group A, B and C were considered as treatment groups which were provided with basal diet, water and supplementation of M. oleifera crude leaf aqueous extract at the dose rates of 150mg/kg, 300mg/kg, and 450 mg/kg, respectively. On day 10, 20, 30 and 40, blood samples were collected from all animals. The blood samples (n=96) were analyzed through hematology analyzer and semi-automatic chemistry analyzer. Results regarding hematological attributes revealed that the Mitotic Index was significantly (P=0.05) higher in control group whereas Red Cell Distribution Width Count was significantly (P=0.05) higher in Group C as compared to their counterpart groups. Similarly, Total Erythrocytic Count was significantly (P=0.05) higher in Group B. The creatinine, urea and blood urea nitrogen differed significantly (P=0.05) while Uric acid showed non-significant (P=0.05) difference between the groups. It is concluded that varying doses of Moringa do not exert any untoward effect on hematochemical attributes of rabbits and hence their health. Rather, positive effects were noticed at dose rate of 150mg/kg. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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4. Fatigue life prediction techniques for notch geometries in titanium alloys
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Bache, M.R and Tasleem, M
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- 1999
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5. The impact of employee satisfaction and service quality on perceived firm's performance in high contact service industry of Pakistan
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Ch, Jawaid Islam, primary, Tasleem, M., additional, Akbar, S., additional, and Iqbal, R., additional
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- 2015
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6. Theater of Public Punishment in Pakistan: A Discourse Analysis of Demand for Public Hanging
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Faizullah Jan and Tasleem Malik
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History of scholarship and learning. The humanities ,AZ20-999 ,Social Sciences - Abstract
This paper investigates the discourse of public hanging of rapists on the social media space, that is, Twitter in Pakistan. It also examines how this discourse is interdiscursively related to the power relations particularly implicated in the discourses on religion and gender and the possible effects of this discursive struggle on society. By employing Critical Discourse Analysis (CDA) for analysis, this research uses Laclau and Mouffe’s Discourse Theory as theoretical framework. We conclude that the discourse approving death by hanging for the rapists is a device to propagate the power and the fear of the State. It has a “repetition induced effect” and implies sovereign’s exception; and women are silenced in their demands for justice against the patriarchal social structures which are responsible for crime against women’s body. It also reifies the patriarchal structures and controls societies through vengeance rather than reformative justice.
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- 2022
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7. Pak-Afghan Water Issue: A Case for Benefit-Sharing
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Tasleem Malik
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International relations ,JZ2-6530 - Abstract
Despite being intertwined by geographical, linguistic, regional, religious and ethnic knots, Pakistan and Afghanistan have experienced upheavals in their bilateral relations. Changing regional and international political interests have further complicated their relations. Besides confronting traditional security challenges, Pakistan and Afghanistan are facing a severe non-traditional security threat, i.e., the issue of shared waters without any regulatory mechanism. Despite efforts of international organizations in the past, both countries have failed to reach an agreement over the shared waters. Currently, they are following a unilateral water strategy. Afghanistan-India joint water projects further complicate the situation as Pakistan is already facing issues with the latter due to the increasing number of Indian projects on western rivers. Though water may be critical for the recovery of Afghanistan's agriculture based economy, the projects on Kabul River may have serious implications on downstream irrigation and initiatives, the ecology and bilateral relations between the two riparian countries, Pakistan and Afghanistan. Linked closely to the conflicts among states and societies, water as an environmental security issue must be dealt with the same urgency as traditional security challenges. This paper analyzes the security perceptions in Pakistan and Afghanistan and contends that the probability of a future conflict over shared water has not been duly attended. There is a need to develop an integrated mechanism based on the fundamental principle of benefit-sharing instead of dividing waters or any unilateral decisions.
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- 2019
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8. Sustaining organizational performance through TQM and self assessment approach
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Tasleem, M., Khan, N., Muhammad Shoaib Saleem, and Nisar, A.
9. Exploring pathogenic SNPs and estrogen receptor alpha interactions in breast cancer: An in silico approach.
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Alamri AM, Alkhilaiwi FA, Khan NU, Mashat RM, and Tasleem M
- Abstract
The estrogen receptor 1 gene ( ESR1 ) plays a crucial role in breast and mammary development in humans. Alterations such as gene amplification, genomic rearrangements, and missense mutations in the ESR1 gene are reported to increase the risk of breast cancer in humans. The purpose of this study is to analyze the missense mutations and molecular modeling of ESR1 , focusing on the pathogenic SNP H516N, for a better understanding of disease risk and future benefits for therapeutic benefits. This SNP was selected based on its location in the binding pocket of ESR1 and its predicted impact on drug binding. The in silico analysis was performed by applying various computational approaches to identify highly pathogenic SNPs in the binding pocket of ESR1. The effect of the SNP was explored through docking and intra-molecular interaction studies. All SNPs in ESR1 were identified followed by the identification of the highly pathogenic variant located in the binding pocket of ESR1. The mutant model of the pathogenic SNP H516N was generated, and hydroxytamoxifen was docked with the wild-type and the mutant model. The mutant model lost the formation of stable hydrogen bonds with the active site residues and hydroxytamoxifen, which may result in reduced binding affinity and therefore, will predict the patient's response to estrogenic inhibitors., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests:Ahmad M. Alamri reports financial support was provided by 10.13039/501100007446King Khalid University. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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10. Role of Alkannin in the Therapeutic Targeting of Protein-Tyrosine Phosphatase 1B and Aldose Reductase in Type 2 Diabetes: An In Silico and In Vitro Evaluation.
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Saeed M, Shoaib A, Tasleem M, Al-Shammary A, Kausar MA, El Asmar Z, Abdelgadir A, Sulieman AME, Ahmed EH, Zahin M, and Ansari IA
- Abstract
Alkannin is a plant-derived naphthoquinone that is isolated from the Boraginaceae family plants. In our previous studies, we found that shikonin, which is the R -enantiomer of alkannin, has potent antidiabetic activity by inhibiting the action of the aldose reductase (AR) enzyme and the protein-tyrosine phosphatase 1B (PTP1B). Therefore, in this study, we aim to explore the antidiabetic effect of alkannin targeting PTP1B and AR by employing in silico and in vitro techniques. For in silico , we used different parameters such as ADMET analysis, molecular docking, MD simulation, Root Mean Square Deviation (RMSD), protein-ligand mapping, and free binding energy calculation. The in vitro evaluation was done by assessing the inhibitory activity and enzyme kinetics of PTP1B and AR inhibition by alkannin. The in silico studies indicate that alkannin possesses favorable pharmacological properties and possesses strong binding affinity for diabetes target proteins. Hydrogen bonds (Val297, Ala299, Leu300, and Ser302) and hydrophobic interactions (Trp20, Val47, Tyr48, Trp79, Trp111, Phe122, Trp219, Val297, Cys298, Ala299, Leu300, and Leu301) are established by the compound, which potentially improves specificity and aids in the stabilization of the protein-ligand complex. The results from in vitro studies show a potent dose-dependent PTP1B inhibitory activity with an IC
50 value of 19.47 μM, and toward AR it was estimated at 22.77 μM. Thus, from the results it is concluded that a low IC50 value of alkannin for both PTP1B and AR along with favorable pharmacological properties and optimal intra-molecular interactions indicates its utilization as a potential drug candidate for the management of diabetes and its end complications., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)- Published
- 2024
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11. C ucumis melo compounds: A new avenue for ALR-2 inhibition in diabetes mellitus.
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Alshaghdali K, Tasleem M, Rezgui R, Alharazi T, Acar T, Aljerwan RF, Altayyar A, Siddiqui S, Saeed M, Yadav DK, and Saeed A
- Abstract
Diabetes mellitus (DM) is a prominent contributor to morbidity and mortality in developed nations, primarily attributable to vascular complications such as atherothrombosis occurring in the coronary arteries. Aldose reductase (ALR2), the main enzyme in the polyol pathway, catalyzes the conversion of glucose to sorbitol, leading to a significant buildup of reactive oxygen species in different tissues. It is therefore a prime candidate for therapeutic targeting, and extensive study is currently underway to discover novel natural compounds that can inhibit it. Cucumis melo (C. melo) has a long history as a lipid-lowering ethanopharmaceutical plant. In this study, compounds derived from C. melo were computationally evaluated as possible lead candidates. Various computational filtering methods were employed to assess the drug-like properties and ADMET (absorption, distribution, metabolism, excretion, and toxicity) profiles of the compounds. The compounds were subsequently addressed to analysis of their interactions, molecular docking, and molecular dynamics simulation studies. When compared to the conventional therapeutic compounds, three compounds exhibited enhanced binding affinity and intra-molecular residue interactions, resulting in increased stability and specificity. Consequently, four potent inhibitors, namely PubChem CIDs 119205, 65373, 6184, and 332427, have been identified. These inhibitors exhibit promising potential as pharmacological targets for the advancement of novel ALR-2 inhibitors., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 Published by Elsevier Ltd.)
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- 2024
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12. Design, synthesis, and in vitro and in silico studies of morpholine derived thiazoles as bovine carbonic anhydrase-II inhibitors.
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Tasleem M, Ullah S, Khan A, Mali SN, Kumar S, Mathew B, Oneto A, Noreen F, Eldesoky GE, Schenone S, Al-Harrasi A, and Shafiq Z
- Abstract
Carbonic anhydrase CA-II enzyme is essential for maintaining homeostasis in several processes, including respiration, lipogenesis, gluconeogenesis, calcification, bone resorption, and electrolyte balance due to its vital function within cellular processes. Herein, we screened 25 newly synthesized thiazole derivatives and assessed their inhibitory potential against the zinc-containing carbonic anhydrase CA-II enzyme. Intriguingly, derivatives of thiazole exhibited varying degrees of inhibitory action against CA-II. The distinctive attribute of these compounds is that they can attach to the CA-II binding site and block its action. Morpholine based thiazoles can be strategically modified to improve bovine CA-II inhibitor binding affinity, selectivity, and pharmacokinetics. Thiazole and morpholine moieties can boost inhibitory efficacy and selectivity over other calcium-binding proteins by interacting with target bovine CA-II binding sites. The derivatives 23-26 exhibited greater affinity when compared to the standard acetazolamide. Furthermore, kinetic study of the most potent compound 24 was performed, which exhibited concentration dependent inhibition with a K
i value of 9.64 ± 0.007 μM. Molecular docking, MD simulation and QSAR analysis was also carried out to elucidate the interactions, orientation, and conformational changes of these compounds within the active site of the enzyme. Moreover, pharmacokinetic assessments showed that most of the compounds possess attributes conducive to potential drug development., Competing Interests: The authors have declared no conflict of interest., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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13. Electrocatalysis Using Cobalt Porphyrin Covalently Linked with Multi-Walled Carbon Nanotubes: Hydrazine Sensing and Hydrazine-Assisted Green Hydrogen Synthesis.
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Tasleem M, Singh V, Tiwari A, Ganesan V, and Sankar M
- Abstract
Acid-treated multi-walled carbon nanotube (MWCNT) covalently functionalized with cobalt triphenothiazine porphyrin (CoTriPTZ-OH) A
3 B type porphyrin, containing three phenothiazine moieties (represented as MWCNT-CoTriPTZ) is synthesized and characterized by various spectroscopic and microscopic techniques. The nanoconjugate, MWCNT-CoTriPTZ, exhibits a pair of distinct redox peaks due to the Co2+ /Co3+ redox process in 0.1 M pH 7.0 phosphate buffer. Further, it electrocatalytically oxidizes hydrazine at a low overpotential with a high current. This property is advantageously utilized for the sensitive determination of hydrazine. The developed electrochemical sensor exhibits high sensitivity (0.99 µAµM-1 cm-2 ), a low limit of detection (4.5 ppb), and a broad linear calibration range (0.1 µM to 3.0 mM) for the determination of hydrazine. Further, MWCNT-CoTriPTZ is exploited for hydrazine-assisted green hydrogen synthesis. The high efficiency of hydrazine oxidation is confirmed by the low onset potential (0.45 V (vs RHE)) and 0.60 V (vs RHE) at the current density of 10 mA.cm-2 . MWCNT-CoTriPTZ displays a high current density (77.29 mA.cm-2 ) at 1.45 V (vs RHE)., (© 2024 Wiley‐VCH GmbH.)- Published
- 2024
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14. Synthesis, in vitro, and in silico studies of morpholine-based thiosemicarbazones as ectonucleotide pyrophosphatase/phosphodiesterase-1 and -3 inhibitors.
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Tasleem M, Pelletier J, Sévigny J, Hussain Z, Khan A, Al-Harrasi A, El-Kott AF, Taslimi P, Negm S, Shafiq Z, and Iqbal J
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- Humans, Kinetics, Phosphodiesterase Inhibitors chemistry, Phosphodiesterase Inhibitors pharmacology, Phosphodiesterase Inhibitors chemical synthesis, Computer Simulation, Structure-Activity Relationship, Ligands, Morpholines chemistry, Morpholines pharmacology, Morpholines chemical synthesis, Phosphoric Diester Hydrolases chemistry, Phosphoric Diester Hydrolases metabolism, Molecular Docking Simulation, Pyrophosphatases antagonists & inhibitors, Pyrophosphatases chemistry, Pyrophosphatases metabolism, Molecular Dynamics Simulation, Thiosemicarbazones chemistry, Thiosemicarbazones pharmacology, Thiosemicarbazones chemical synthesis
- Abstract
An extensive range of new biologically active morpholine based thiosemicarbazones derivatives 3a-r were synthesized, characterized by spectral techniques and evaluated as inhibitors of ENPP isozymes. Most of the novel thiosemicarbazones exhibit potent inhibition towards NPP1 and NPP3 isozymes. Compound 3 h was potent inhibitor of NPP1 with IC
50 value of 0.55 ± 0.02. However, the most powerful inhibitor of NPP3 was 3e with an IC50 value of 0.24 ± 0.02. Furthermore, Lineweaver-Burk plot for compound 3 h against NPP1 and for compound 3e against NPP3 was devised through enzymes kinetics studies. Molecular docking and in silico studies was also done for analysis of interaction pattern of all newly synthesized compounds. The results were further validated by molecular dynamic (MD) simulation where the stability of conformational transformation of the best protein-ligand complex (3e) were justified on the basis of RMSD and RMSF analysis., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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15. BRCA2 Polymorphisms and Breast Cancer Susceptibility: a Multi-Tools Bioinformatics Approach.
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Jan H, Khan NU, Al-Qaaneh AM, Tasleem M, Almutairi MH, and Ali I
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- Humans, Female, Genes, BRCA2, Polymorphism, Single Nucleotide, Computational Biology, BRCA2 Protein genetics, Breast Neoplasms genetics
- Abstract
Background/aims: The main focus of this investigation is to identify deleterious single nucleotide polymorphisms (SNPs) located in the BRCA2 gene through in silico approach, thereby,providing an understanding of potential consequences regarding the susceptibility to breast cancer., Methods: The GenomAD database was used to identify SNPs. To determine the potential adverse consequences, our study employed various prediction tools, including SIFT, PolyPhen, PredictSNP, SNAP2, PhD-SNP, and ClinVar. The pathogenicity associated with the deleterious snSNPs was evaluated bu MutPred and Fathmm. Additionally, I-Mutant and MuPro were used to assess the stability, followed by conservation and protein-protein interaction analysis using robust computational tools. The 3D structure of BRCA2 protein was generated by SwissModel, followed by validation using PROCHECK and Errat., Results: The GenomAD database was used to identify a total of 7, 921 SNPs, including 1940 missense SNPs. A set of 69 SNPs predicted by consensus to be damaging across all platforms was identified. Mutpred and Fathmm identified 48 and 38 SNPs, respectively to be associated with cancer. While I- Mutant and MuPro assays suggested 22 SNPs to decrease protein stability. Additionally, these 22 SNPs reside within highly conserved regions of the BRCA2 protein. Domain analysis, utilizing InterPro, pinpointed 18 deleterious mutations within crucial DNA binding domains and one in the BRC repeat region., Conclusion: This study establishes a foundation for future experimental validations and the creation of breast cancer-targeted treatment approaches., Competing Interests: The authors declared no competing interests and have nothing to disclose., (© Copyright by the Author(s). Published by Cell Physiol Biochem Press.)
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- 2024
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16. Synthesis of 3-hydroxy-2-naphthohydrazide-based hydrazones and their implications in diabetic management via in vitro and in silico approaches.
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Tasleem M, Ullah S, Halim SA, Urooj I, Ahmed N, Munir R, Khan A, El-Kott AF, Taslimi P, Negm S, Al-Harrasi A, and Shafiq Z
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- Humans, Molecular Structure, Structure-Activity Relationship, Hydrazones pharmacology, Hydrazones chemistry, alpha-Glucosidases metabolism, Molecular Docking Simulation, Glycoside Hydrolase Inhibitors, Diabetes Mellitus drug therapy
- Abstract
Diabetes mellitus (DM) has prevailed as a chronic health condition and has become a serious global health issue due to its numerous consequences and high prevalence. We have synthesized a series of hydrazone derivatives and tested their antidiabetic potential by inhibiting the essential carbohydrate catabolic enzyme, "α-glucosidase." Several approaches including fourier transform infrared,
1 H NMR, and13 C NMR were utilized to confirm the structures of all the synthesized derivatives. In vitro analysis of compounds 3a-3p displayed more effective inhibitory activities against α-glucosidase with IC50 in a range of 2.80-29.66 µM as compared with the commercially available inhibitor, acarbose (IC50 = 873.34 ± 1.67 M). Compound 3h showed the highest inhibitory potential with an IC50 value of 2.80 ± 0.03 µM, followed by 3i (IC50 = 4.13 ± 0.06 µM), 3f (IC50 = 5.18 ± 0.10 µM), 3c (IC50 = 5.42 ± 0.11 µM), 3g (IC50 = 6.17 ± 0.15 µM), 3d (IC50 = 6.76 ± 0.20 µM), 3a (IC50 = 9.59 ± 0.14 µM), and 3n (IC50 = 10.01 ± 0.42 µM). Kinetics analysis of the most potent compound 3h revealed a concentration-dependent form of inhibition by 3h with Ki value = 4.76 ± 0.0068 µM. Additionally, an in silico docking approach was applied to predict the binding patterns of all the compounds, which indicates that the hydrazide and the naphthalene-ol groups play a vital role in the binding of the compounds with the essential residues (i.e., Glu277 and Gln279) of the α-glucosidase enzyme., (© 2023 Deutsche Pharmazeutische Gesellschaft.)- Published
- 2024
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17. Targeting GluR3 in Depression and Alzheimer's Disease: Novel Compounds and Therapeutic Prospects.
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Saeed A, Alharazi T, Alshaghdali K, Rezgui R, Elnaem I, Alreshidi BAT, Tasleem M, and Saeed M
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- Humans, Molecular Docking Simulation, Depression drug therapy, Molecular Dynamics Simulation, Alzheimer Disease drug therapy
- Abstract
Background: The present study investigates the interrelated pathophysiology of depression and Alzheimer's disease (AD), with the objective of elucidating common underlying mechanisms., Objective: Our objective is to identify previously undiscovered biogenic compounds from the NuBBE database that specifically interact with GluR3. This study examines the bidirectional association between depression and AD, specifically focusing on the role of depression as a risk factor in the onset and progression of the disease., Methods: In this study, we utilize pharmacokinetics, homology modeling, and molecular docking-based virtual screening techniques to examine the GluR3 AMPA receptor subunit., Results: The compounds, namely ZINC000002558953, ZINC000001228056, ZINC000000187911, ZINC000003954487, and ZINC000002040988, exhibited favorable pharmacokinetic profiles and drug-like characteristics, displaying high binding affinities to the GluR3 binding pocket., Conclusions: These findings suggest that targeting GluR3 could hold promise for the development of therapies for depression and AD. Further validation through in vitro, in vivo, and clinical studies is necessary to explore the potential of these compounds as lead candidates for potent and selective GluR3 inhibitors. The shared molecular mechanisms between depression and AD provide an opportunity for novel treatment approaches that address both conditions simultaneously.
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- 2024
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18. Pseudomonas putida Metallothionein: Structural Analysis and Implications of Sustainable Heavy Metal Detoxification in Madinah.
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Tasleem M, El-Sayed AAA, Hussein WM, and Alrehaily A
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Heavy metals, specifically cadmium (Cd) and lead (Pb), contaminating water bodies of Madinah (Saudi Arabia), is a significant environmental concern that necessitates prompt action. Madinah is exposed to toxic metals from multiple sources, such as tobacco, fresh and canned foods, and industrial activities. This influx of toxic metals presents potential hazards to both human health and the surrounding environment. The aim of this study is to explore the viability of utilizing metallothionein from Pseudomonas putida ( P. putida ) as a method of bioremediation to mitigate the deleterious effects of pollution attributable to Pb and Cd. The use of various computational approaches, such as physicochemical assessments, structural modeling, molecular docking, and protein-protein interaction investigations, has enabled us to successfully identify the exceptional metal-binding properties that metallothionein displays in P. putida . The identification of specific amino acid residues, namely GLU30 and GLN21, is crucial in understanding their pivotal role in facilitating the coordination of lead and cadmium. In addition, post-translational modifications present opportunities for augmenting the capacity to bind metals, thereby creating possibilities for focused engineering. The intricate web of interactions among proteins serves to emphasize the protein's participation in essential cellular mechanisms, thereby emphasizing its potential contributions to detoxification pathways. The present study establishes a strong basis for forthcoming experimental inquiries, offering potential novel approaches in bioremediation to tackle the issue of heavy metal contamination. Metallothionein from P. putida presents a highly encouraging potential as a viable remedy for environmental remediation, as it is capable of proficiently alleviating the detrimental consequences related to heavy metal pollution.
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- 2023
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19. An In Silico Bioremediation Study to Identify Essential Residues of Metallothionein Enhancing the Bioaccumulation of Heavy Metals in Pseudomonas aeruginosa .
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Tasleem M, Hussein WM, El-Sayed AAA, and Alrehaily A
- Abstract
Microorganisms are ubiquitously present in the environment and exert significant influence on numerous natural phenomena. The soil and groundwater systems, precipitation, and effluent outfalls from factories, refineries, and waste treatment facilities are all sources of heavy metal contamination. For example, Madinah, Saudi Arabia, has alarmingly high levels of lead and cadmium. The non-essential minerals cadmium (Cd) and lead (Pb) have been linked to damage to vital organs. Bioremediation is an essential component in the process of cleaning up polluted soil and water where biological agents such as bacteria are used to remove the contaminants. It is demonstrated that Pseudomonas aeruginosa ( P. aeruginosa) isolated from activated sludge was able to remove Cd and Pb from water. The protein sequence of metallothionein from P. aeruginosa was retrieved to explore it for physicoparameters, orthologs, domain, family, motifs, and conserved residues. The homology structure was generated, and models were validated. Docking of the best model with the heavy metals was carried out to inspect the intramolecular interactions. The target protein was found to belong to the "metallothionein_pro" family, containing six motifs, and showed a close orthologous relationship with other heavy metal-resistant bacteria. The best model was generated by Phyre2. In this study, three key residues of metallothionein were identified that participate in heavy metal (Pb and Cd) binding, viz., Ala33, Ser34, and Glu59. In addition, the study provides an essential basis to explore protein engineering for the optimum use of metallothionein protein to reduce/remove heavy metals from the environment.
- Published
- 2023
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20. Co(II) Porphyrin-MWCNT Nanoconjugate as an Efficient and Durable Electrocatalyst for Oxygen Reduction Reaction.
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Tasleem M, Yadav M, Ganesan V, and Sankar M
- Abstract
Recently, researchers are seeking alternatives to replace Pt-based oxygen reduction reaction (ORR) catalysts used in fuel cells due to their high cost and certain stability and selectivity issues. For this purpose, we have synthesized a nanoconjugate, cobalt(II) porphyrin (5,10,15-triphenyl-20-(4-aminophenyl)porphyrinatocobalt(II), CoTPP-NH
2 ) covalently attached to the acid-functionalized multiwalled carbon nanotubes and characterized by various techniques including UV-vis spectroscopy, FTIR, TGA, FESEM, TEM, and Raman spectroscopy. The oxygen reduction performance of the nanoconjugate is checked in basic medium. The ORR onset potential of the nanoconjugate-modified electrode is nearly the same as that of the state-of-the-art platinum-carbon electrode and stable for more than 3000 CV cycles with a 20 mV difference in the onset potential before and after the 3000 CV cycles. The above extrapolations reveal that the nanoconjugate has efficient performance for the ORR in basic medium.- Published
- 2023
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21. Therapeutic potential of 1,3,4-oxadiazoles as potential lead compounds for the treatment of Alzheimer's disease.
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Naseem S, Temirak A, Imran A, Jalil S, Fatima S, Taslimi P, Iqbal J, Tasleem M, Tahir MN, and Shafiq Z
- Abstract
Monoamine oxidase and cholinesterase enzymes are important targets for the treatment of several neurological diseases especially depression, Parkinson disease and Alzheimer's. Here, we report the synthesis and testing of new 1,3,4-oxadiazole derivatives as novel inhibitors of monoamine oxidase enzymes (MAO-A and MAO-B) and cholinesterase enzymes (acetyl and butyryl cholinesterase (AChE, BChE). Compounds 4c, 4d, 4e, 4g, 4j, 4k, 4m, 4n displayed promising inhibitory effects on MAO-A (IC
50 : 0.11-3.46 μM), MAO-B (IC50 : 0.80-3.08 μM) and AChE (IC50 : 0.83-2.67 μM). Interestingly, compounds 4d, 4e and 4g are multitargeting MAO-A/B and AChE inhibitors. Also, Compound 4m displayed promising MAO-A inhibition with IC50 of 0.11 μM and high selectivity (∼25-fold) over MAO-B and AChE enzymes. These newly synthesized analogues represent promising hits for the development of promising lead compounds for neurological disease treatment., Competing Interests: The authors declare that they have no significant conflict of interest., (This journal is © The Royal Society of Chemistry.)- Published
- 2023
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22. Synthesis of novel 3-hydroxy-2-naphthoic hydrazones as selective chemosensors for cyanide ions.
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Alharthy RD, Urooj I, Tasleem M, Khalid M, Asghar MA, Khan SI, Ajmal M, Ahmed N, and Shafiq Z
- Abstract
The development of an effective and selective chemosensor for CN
- ions has become the need of the hour due to their hazardous impact on the environment and humans. Herein, we report the synthesis of two novel chemosensors, IF-1 and IF-2 based on 3-hydroxy-2-naphthohydrazide and aldehyde derivatives that have shown selective sensing of CN- ions. IF-2 exhibited exclusive binding with CN- ions that is further confirmed by the binding constant value of 4.77 × 104 M-1 with a low detection limit (8.2 μM). The chemosensory potential is attributed to deprotonation of the labile Schiff base center by CN- ions that results in a color change from colorless to yellow as visible by the naked eye. Accompanying this, a DFT study was also performed in order to find the interaction between the sensor (IF-1) and its ions (F- ). A notable charge transfer from 3-hydroxy-2-naphthamide to 2,4-di- tert -butyl-6-methylphenol, was indicated by the FMO analysis. The QTAIM analysis revealed that in the complex compound, the strongest pure hydrogen-hydrogen bonding was observed between H53 and H58, indicated by a ρ value of +0.017807. Due to its selective response, IF-2 can be successfully used for making test strips for the detection of CN- ions., Competing Interests: The authors declare no conflict of interest, financial or otherwise., (This journal is © The Royal Society of Chemistry.)- Published
- 2023
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23. In silico Screening and Validation of Achyranthes aspera as a Potential Inhibitor of BRAF and NRAS in Controlling Thyroid Cancer.
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Alamri AM, Alkhilaiwi FA, Khan NU, and Tasleem M
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- Humans, Molecular Docking Simulation, Mutation, Phytochemicals pharmacology, Achyranthes chemistry, GTP Phosphohydrolases antagonists & inhibitors, Membrane Proteins antagonists & inhibitors, Proto-Oncogene Proteins B-raf antagonists & inhibitors, Thyroid Neoplasms drug therapy, Thyroid Neoplasms genetics, Thyroid Neoplasms metabolism
- Abstract
Background: Thyroid carcinoma (THCA) is one of the most prevalent endocrine tumors, accounting for 3.4% of all cancers diagnosed annually. Single Nucleotide Polymorphisms (SNPs) are the most prevalent genetic variation associated with thyroid cancer. Understanding thyroid cancer genetics will enhance diagnosis, prognosis, and treatment., Methods: This TCGA-based study analyzes thyroid cancer-associated highly mutated genes through highly robust in silico techniques. Pathway, gene expression, and survival studies were performed on the top 10 highly mutated genes (BRAF, NRAS, TG, TTN, HRAS, MUC16, ZFHX3, CSMD2, EIFIAX, SPTA1). Novel natural compounds from Achyranthes aspera Linn were discovered to target two highly mutated genes. The natural compounds and synthetic drugs used to treat thyroid cancer were subjected to comparative molecular docking against BRAF and NRAS targets. The ADME characteristics of Achyranthes aspera Linn compounds were also investigated., Results: The gene expression analysis revealed that the expression of ZFHX3, MCU16, EIF1AX, HRAS , and NRAS was up-regulated in tumor cells while BRAF, TTN, TG, CSMD2, and SPTA1 were down-regulated in tumor cells. In addition, the protein-protein interaction network demonstrated that HRAS, BRAF, NRAS, SPTA1 , and TG proteins have strong interactions with each other as compared to other genes. The ADMET analysis shows that seven compounds have druglike properties. These compounds were further studied for molecular docking studies. The compounds MPHY012847, IMPHY005295, and IMPHY000939 show higher binding affinity with BRAF than pimasertib. In addition, IMPHY000939, IMPHY000303, IMPHY012847, and IMPHY005295 showed a better binding affinity with NRAS than Guanosine Triphosphate., Conclusion: The outcomes of docking experiments conducted on BRAF and NRAS provide insight into natural compounds with pharmacological characteristics. These findings indicate that natural compounds derived from plants as a more promising cancer treatment option. Thus, the results of docking investigations conducted on BRAF and NRAS substantiate the conclusions that the molecule possesses the most suited drug-like qualities. Compared to other compounds, natural compounds are superior, and they are also druggable. This demonstrates that natural plant compounds can be an excellent source of potential anti-cancer agents. The preclinical research will pave the road for a possible anti-cancer agent., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2023
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24. Computational analysis of PTP-1B site-directed mutations and their structural binding to potential inhibitors.
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Tasleem M, Shoaib A, Al-Shammary A, Abdelgadir A, Alsamar Z, Jamal QMS, Alrehaily A, Bardcki F, Sulieman AME, Upadhyay TK, Ansari IA, Lai D, Badroui R, Yadav DK, and Saeed M
- Subjects
- Humans, Phosphoric Monoester Hydrolases therapeutic use, Enzyme Inhibitors pharmacology, Enzyme Inhibitors chemistry, Protein Binding, Hypoglycemic Agents pharmacology, Hypoglycemic Agents therapeutic use, Insulin therapeutic use, Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 genetics
- Abstract
Protein tyrosine phosphatase-1B (PTP-1B) is a well-known therapeutic target for diabetes and obesity as it suppresses insulin and leptin signaling. PTP-1B deletion or pharmacological suppression boosted glucose homeostasis and insulin signaling without altering hepatic fat storage. Inhibitors of PTP-1B may be useful in the treatment of type 2 diabetes, and shikonin, a naturally occurring naphthoquinone dye pigment, is reported to inhibit PTP-1B and possess antidiabetic properties. Since the cell contains a large number of phosphatases, PTP-1B inhibitors must be effective and selective. To explore more about the mechanism underlying the inhibitor's efficacy and selectivity, we investigated its top four pharmacophores and used site-directed mutagenesis to insert amino acid mutations into PTP-1B as an extension of our previous study where we identified 4 pharmacophores of shikonin. The study aimed to examine the site-directed mutations like R24Y, S215E, and S216C influence the binding of shikonin pharmacophores, which act as selective inhibitors of PTP-1B. To achieve this purpose, docking and molecular dynamics simulations of wild-type (WT) and mutant PTP-1B with antidiabetic compounds were undertaken. The simulation results revealed that site-directed mutations can change the hydrogen bond and hydrophobic interactions between shikonin pharmacophores and many residues in PTP-1B's active site, influencing the drug's binding affinity. These findings could aid researchers in better understanding PTP-1B inhibitors' selective binding mechanism and pave the path for the creation of effective PTP-1B inhibitors.
- Published
- 2022
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25. Identification of Putative Plant-Based ALR-2 Inhibitors to Treat Diabetic Peripheral Neuropathy.
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Saeed M, Tasleem M, Shoib A, Kausar MA, Sulieman AME, Alabdallah NM, El Asmar Z, Abdelgadir A, Al-Shammary A, Alam MJ, Badroui R, and Zahin M
- Abstract
Diabetic peripheral neuropathy (DPN) is a common diabetes complication (DM). Aldose reductase -2 (ALR-2) is an oxidoreductase enzyme that is most extensively studied therapeutic target for diabetes-related complications that can be inhibited by epalrestat, which has severe adverse effects; hence the discovery of potent natural inhibitors is desired. In response, a pharmacophore model based on the properties of eplarestat was generated. The specified pharmacophore model searched the NuBBE
DB database of natural compounds for prospective lead candidates. To assess the drug-likeness and ADMET profile of the compounds, a series of in silico filtering procedures were applied. The compounds were then put through molecular docking and interaction analysis. In comparison to the reference drug, four compounds showed increased binding affinity and demonstrated critical residue interactions with greater stability and specificity. As a result, we have identified four potent inhibitors: ZINC000002895847, ZINC000002566593, ZINC000012447255, and ZINC000065074786, that could be used as pharmacological niches to develop novel ALR-2 inhibitors.- Published
- 2022
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26. Investigation of antidiabetic properties of shikonin by targeting aldose reductase enzyme: In silico and in vitro studies.
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Saeed M, Tasleem M, Shoaib A, Alabdallah NM, Alam MJ, El Asmar Z, Jamal QMS, Bardakci F, Ansari IA, Ansari MJ, Wang F, Badraoui R, and Yadav DK
- Subjects
- Aldehyde Reductase metabolism, Enzyme Inhibitors pharmacology, Enzyme Inhibitors therapeutic use, Humans, Hypoglycemic Agents pharmacology, Hypoglycemic Agents therapeutic use, Molecular Docking Simulation, Diabetes Mellitus drug therapy, Naphthoquinones pharmacology, Naphthoquinones therapeutic use
- Abstract
Diabetes is a complicated multifactorial disorder in which the patient generally observes polyphagia, polydipsia, and polyuria due to uncontrolled growth in blood sugar levels. For its management, the pharmaceutical industry is working day and night to find a better drug with no or least toxicity. That's why nowadays a more focused branch is to use herbal phytoconstituents for its prevention. Shikonin is a naphthoquinone natural dye that is isolated from the plants of the Boraginaceae family and has proven its role as an anti-cancer, anti-inflammatory, and anti-gonadotrophic agent. In our previous study, we have published its anti-diabetic action by inhibiting the enzyme protein tyrosine phosphatase 1B. In this study, we were more focused on finding out the role of Shikonin and its pharmacophores by inhibiting the action of aldose reductase (AR) enzyme. The study was conducted using pharmacophore modeling, molecular docking, and molecular dynamics simulation studies. The absorption, distribution, metabolism, excretion (ADME), and toxicity profile were also evaluated in this study. Along with all the computational biology parameters we also focused on the in vitro activity and kinetic study of inhibitory activity of Shikonin against aldose reductase., (Copyright © 2022 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
- Published
- 2022
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27. Repurposing of anisomycin and oleandomycin as a potential anti-(SARS-CoV-2) virus targeting key enzymes using virtual computational approaches.
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Zrieq R, Snoussi M, Algahtan FD, Tasleem M, Saeed M, Noumi E, Khalifa NE, Gad-Elkareem MAM, Aouadi K, and Kadri A
- Subjects
- Anisomycin, Antiviral Agents chemistry, Antiviral Agents pharmacology, Drug Repositioning methods, Humans, Molecular Docking Simulation, Oleandomycin, SARS-CoV-2, COVID-19 Drug Treatment
- Abstract
Despite the accelerated emerging of vaccines, development against the severe acute respiratory syndrome coronavirus 2 (SARS CoV-2) drugs discovery is still in demand. Repurposing the existing drugs is an ideal time/cost-effective strategy to tackle the clinical impact of SARS CoV-2. Thereby, the present study is a promising strategy that proposes the repurposing of approved drugs against pivotal proteins that are responsible for the viral propagation of SARS-CoV-2 virus Angiotensin-converting enzyme-2 (ACE2; 2AJF), 3CL-protease: main protease (6LU7), Papain-like protease (6W9C), Receptor Binding Domain of Spike protein (6VW1), Transmembrane protease serine 2 (TMPRSS-2; 5AFW) and Furin (5MIM) by in silico methods. Molecular docking results were analyzed based on the binding energy and active site interactions accomplished with pharmacokinetic analysis. It was observed that both anisomycin and oleandomycin bind to all selected target proteins with good binding energy, achieving the most favorable interactions. Considering the results of binding affinity, pharmacokinetics and toxicity of anisomycin and oleandomycin, it is proposed that they can act as potential drugs against the SARS CoV-2 infection. Further clinical testing of the reported drugs is essential for their use in the treatment of SARS CoV-2 infection.
- Published
- 2022
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28. Identification of novel resources for panicle blast resistance from wild rice accessions and mutants of cv. Nagina 22 by syringe inoculation under field conditions.
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Kumar V, Singh PK, Karkute SG, Tasleem M, Bhagat S, Abdin MZ, Sevanthi AM, Rai A, Sharma TR, Singh NK, and Solanke AU
- Abstract
Panicle blast is the most severe type of rice blast disease. Screening of rice genotypes for panicle blast resistance at the field level requires an efficient and robust method of inoculation. Here, we standardized a method that can be utilized for both small- and large-scale screening and assessment of panicle blast infection and disease reaction. The method involves inoculation of Magnaporthe oryzae spore culture in the neck of the rice panicle using a syringe and covering the inoculation site with wet cotton wrapped with aluminum foil to provide the required humidity for spore germination. The method was standardized using panicle blast-resistant cv. Tetep and susceptible cv. HP2216 inoculated with Mo-ni-025 isolate of M. oryzae . The method was evaluated at phenotypic as well as molecular level by expression analysis of disease responsive pathogenesis-related (PR) genes. We found this method simple, robust, reliable, and highly efficient for screening of large germplasm sets of rice for panicle blast. This was validated by screening the wild rice germplasm for panicle blast response in the field using three M. oryzae strains and subsequently with the most virulent strain in 45 EMS-induced mutants of Nagina 22 shortlisted based on field screening in a blast hotspot region. We identified five novel blast disease-resistant wild rice genotypes and 15 Nagina 22 mutants that can be used in breeding programmes., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest in the publication., (© King Abdulaziz City for Science and Technology 2022.)
- Published
- 2022
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29. Tripeptides from Allium subhirsitum L. extracts: Pharmacokinetics properties, toxicity prediction and in silico study against SARS-CoV-2 enzymes and pro-inflammatory proteins.
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Snoussi M, Noumi E, Mosbah A, Redissi A, Saeed M, Tasleem M, Alreshidi M, Adnan M, Al-Rashidi A, Siddiqui AJ, Aouadi K, De Feo V, and Kadri A
- Subjects
- Antiviral Agents chemistry, Antiviral Agents pharmacology, Humans, Molecular Docking Simulation, SARS-CoV-2, Allium, COVID-19 Drug Treatment
- Abstract
Developing new prophylactic and therapeutic agents with broad-spectrum antiviral activities is urgently needed to combat emerging human severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Since no available clinically antiviral drugs have been approved to eradicate COVID-19 as of the writing of this report, this study aimed to investigate bioactive short peptides from Allium subhirsutum L. (Hairy garlic) extracts identified through HR-LC/MS analysis that could potentially hinder the multiplication cycle of SARS-CoV-2 via molecular docking study. The obtained promising results showed that the peptides (Asn-Asn-Asn) possess the highest binding affinities of -8.4 kcal/mol against S protein, (His-Phe-Gln) of -9.8 kcal/mol and (Gln-His-Phe) of -9.7 kcal/mol towards hACE2, (Thr-Leu-Trp) of -10.3 kcal/mol and (Gln-Phe-Tyr) of -9.8 kcal/mol against furin. Additionally, the identified peptides show strong interactions with the targeted and pro-inflammatory ranging from -8.1 to -10.5 kcal/mol for NF-κB-inducing kinase (NIK), from -8.2 to -10 kcal/mol for phospholipase A2 (PLA2), from -8.0 to -10.7 kcal/mol for interleukin-1 receptor-associated kinase 4 (IRAK-4), and from -8.6 to -11.6 kcal/mol for the cyclooxygenase 2 (COX2) with Gln-Phe-Tyr model seems to be the most prominent. Results from pharmacophore, drug-likeness and ADMET prediction analyses clearly evidenced the usability of the peptides to be developed as an effective drug, beneficial for COVID-19 treatment.
- Published
- 2022
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30. Investigation of Antidepressant Properties of Yohimbine by Employing Structure-Based Computational Assessments.
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Tasleem M, Alrehaily A, Almeleebia TM, Alshahrani MY, Ahmad I, Asiri M, Alabdallah NM, and Saeed M
- Subjects
- Amino Acid Sequence, Binding Sites, Blood-Brain Barrier drug effects, Blood-Brain Barrier metabolism, Humans, Molecular Conformation, Molecular Structure, Mutation, Permeability, Protein Binding, Protein Conformation, Receptor, Serotonin, 5-HT1A chemistry, Receptor, Serotonin, 5-HT1A metabolism, Structure-Activity Relationship, Antidepressive Agents chemistry, Antidepressive Agents pharmacology, Models, Molecular, Yohimbine chemistry, Yohimbine pharmacology
- Abstract
The use of pharmaceuticals to treat Major Depressive Disorder (MDD) has several drawbacks, including severe side effects. Natural compounds with great efficacy and few side effects are in high demand due to the global rise in MDD and ineffective treatment. Yohimbine, a natural compound, has been used to treat various ailments, including neurological conditions, since ancient times. Serotonergic neurotransmission plays a crucial role in the pathogenesis of depression; thus, serotonergic receptor agonist/antagonistic drugs are promising anti-depressants. Yohimbine was investigated in this study to determine its antidepressant activity using molecular docking and pharmacokinetic analyses. Additionally, the in silico mutational study was carried out to understand the increase in therapeutic efficiency using site-directed mutagenesis. Conformational changes and fluctuations occurring during wild type and mutant serotonergic receptor, 5-hydroxytryptamine receptors 1A (5HT1A) and yohimbine were assessed by molecular dynamics MD simulation studies. Yohimbine was found to satisfy all the parameters for drug-likeness and pharmacokinetics analysis. It was found to possess a good dock score and hydrogen-bond interactions with wild type 5HT1A structure. Our findings elaborate the substantial efficacy of yohimbine against MDD; however, further bench work studies may be carried out to prove the same.
- Published
- 2021
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31. Tomatidine and Patchouli Alcohol as Inhibitors of SARS-CoV-2 Enzymes (3CLpro, PLpro and NSP15) by Molecular Docking and Molecular Dynamics Simulations.
- Author
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Zrieq R, Ahmad I, Snoussi M, Noumi E, Iriti M, Algahtani FD, Patel H, Saeed M, Tasleem M, Sulaiman S, Aouadi K, and Kadri A
- Subjects
- Antiviral Agents pharmacology, COVID-19 virology, Coronavirus 3C Proteases metabolism, Coronavirus Papain-Like Proteases metabolism, Endoribonucleases metabolism, Enzyme Inhibitors pharmacology, Humans, Molecular Docking Simulation, Molecular Dynamics Simulation, SARS-CoV-2 drug effects, Tomatine pharmacology, Viral Nonstructural Proteins metabolism, COVID-19 Drug Treatment, Coronavirus 3C Proteases antagonists & inhibitors, Coronavirus Papain-Like Proteases antagonists & inhibitors, Endoribonucleases antagonists & inhibitors, SARS-CoV-2 enzymology, Sesquiterpenes pharmacology, Tomatine analogs & derivatives, Viral Nonstructural Proteins antagonists & inhibitors
- Abstract
Considering the current dramatic and fatal situation due to the high spreading of SARS-CoV-2 infection, there is an urgent unmet medical need to identify novel and effective approaches for prevention and treatment of Coronavirus disease (COVID 19) by re-evaluating and repurposing of known drugs. For this, tomatidine and patchouli alcohol have been selected as potential drugs for combating the virus. The hit compounds were subsequently docked into the active site and molecular docking analyses revealed that both drugs can bind the active site of SARS-CoV-2 3CLpro, PLpro, NSP15, COX-2 and PLA2 targets with a number of important binding interactions. To further validate the interactions of promising compound tomatidine, Molecular dynamics study of 100 ns was carried out towards 3CLpro, NSP15 and COX-2. This indicated that the protein-ligand complex was stable throughout the simulation period, and minimal backbone fluctuations have ensued in the system. Post dynamic MM-GBSA analysis of molecular dynamics data showed promising mean binding free energy 47.4633 ± 9.28, 51.8064 ± 8.91 and 54.8918 ± 7.55 kcal/mol, respectively. Likewise, in silico ADMET studies of the selected ligands showed excellent pharmacokinetic properties with good absorption, bioavailability and devoid of toxicity. Therefore, patchouli alcohol and especially, tomatidine may provide prospect treatment options against SARS-CoV-2 infection by potentially inhibiting virus duplication though more research is guaranteed and secured.
- Published
- 2021
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32. SNPs at 3'UTR of APOL1 and miR-6741-3p target sites associated with kidney diseases more susceptible to SARS-COV-2 infection: in silco and in vitro studies.
- Author
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Safdar M, Khan MS, Karim AY, Omar SA, Smail SW, Saeed M, Zaheer S, Ali M, Ahmad B, Tasleem M, and Junejo Y
- Subjects
- Binding Sites genetics, Case-Control Studies, Genotype, Humans, Kidney pathology, SARS-CoV-2 pathogenicity, 3' Untranslated Regions genetics, Apolipoprotein L1 genetics, COVID-19 genetics, Kidney Diseases genetics, MicroRNAs genetics, Polymorphism, Single Nucleotide genetics
- Abstract
Acute Kidney Injury (AKI) is a common manifestation of COVID-19 and several cases have been reported in the setting of the high-risk APOL1 genotype (common genetic variants). This increases the likelihood that African American people with the high-risk genotype APOL1 are at increased risk for kidney disease in the COVID-19 environment. Single-nucleotide polymorphisms (SNPs) are found in various microRNAs (miRNAs) and target genes change the miRNA activity that leads to different diseases. Evidence has shown that SNPs increase/decrease the effectiveness of the interaction between miRNAs and disease-related target genes. The aim of this study is not only to identify miRSNPs on the APOL1 gene and SNPs in miRNA genes targeting 3'UTR but also to evaluate the effect of these gene variations in kidney patients and their association with SARS-COV-2 infection. In 3'UTR of the APOL1 gene, we detected 96 miRNA binding sites and 35 different SNPs with 10 different online software in the binding sites of the miRNA (in silico). Also we studied gene expression of patients and control samples by using qRT-PCR (in vitro). In silico study, the binding site of miR-6741-3p on APOL1 has two SNPs (rs1288875001, G > C; rs1452517383, A > C) on APOL1 3'UTR, and its genomic sequence is the same nucleotide as rs1288875001. Similarly, two other SNPs (rs1142591, T > A; rs376326225, G > A) were identified in the binding sites of miR-6741-3p at the first position. Here, the miRSNP (rs1288875001) in APOL1 3'UTR and SNP (rs376326225) in the miR-6741-3p genomic sequence are cross-matched in the same binding region. In vitro study, the relative expression levels were calculated by the 2
-ΔΔCt method & Mann-Whitney U test. The expression of APOL1 gene was different in chronic kidney patients along with COVID-19. By these results, APOL1 expression was found lower in patients than healthy (p < 0.05) in kidney patients along with COVID-19. In addition, miR-6741-3p targets many APOL1-related genes (TLR7, SLC6A19, IL-6,10,18, chemokine (C-C motif) ligand 5, SWT1, NFYB, BRF1, HES2, NFYB, MED12L, MAFG, GTF2H5, TRAF3, angiotensin II receptor-associated protein, PRSS23) by evaluating online software in the binding sites of the miR-6741-3p. miR-6741-3p has not previously shown any association with kidney diseases and SARS-COV-2 infection. It assures that APOL1 can have a significant consequence in kidney-associated diseases by different pathways. Henceforth, this study represents and demonstrates an effective association between miR-6741-3p and kidney diseases, i.e., collapsing glomerulopathy, chronic kidney disease (CKD), acute kidney injury (AKI), and tubulointerstitial lesions susceptibility to SARS-COV-2 infection via in silico and in vitro exploration and recommended to have better insight., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)- Published
- 2021
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33. Computational Screening of Natural Compounds for Identification of Potential Anti-Cancer Agents Targeting MCM7 Protein.
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Alshahrani MY, Alshahrani KM, Tasleem M, Akeel A, Almeleebia TM, Ahmad I, Asiri M, Alshahrani NA, Alabdallah NM, and Saeed M
- Subjects
- Antineoplastic Agents isolation & purification, Humans, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Biological Products chemistry, Computer Simulation, Minichromosome Maintenance Complex Component 7 antagonists & inhibitors, Neoplasms drug therapy
- Abstract
Minichromosome maintenance complex component 7 (MCM7) is involved in replicative licensing and the synthesis of DNA, and its overexpression is a fascinating biomarker for various cancer types. There is currently no effective agent that can prevent the development of cancer caused by the MCM7 protein. However, on the molecular level, inhibiting MCM7 lowers cancer-related cellular growth. With this purpose, this study screened 452 biogenic compounds extracted from the UEFS Natural Products dataset against MCM protein by using the in silico art of technique. The hit compounds UEFS99, UEFS137, and UEFS428 showed good binding with the MCM7 protein with binding energy values of -9.95, -8.92, and -8.71 kcal/mol, which was comparatively higher than that of the control compound ciprofloxacin (-6.50). The hit (UEFS99) with the minimum binding energy was picked for molecular dynamics (MD) simulation investigation, and it demonstrated stability at 30 ns. Computational prediction of physicochemical property evaluation revealed that these hits are non-toxic and have good drug-likeness features. It is suggested that hit compounds UEFS99, UEFS137, and UEFS428 pave the way for further bench work validation in novel inhibitor development against MCM7 to fight the cancers.
- Published
- 2021
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34. Assessment of Antidiabetic Activity of the Shikonin by Allosteric Inhibition of Protein-Tyrosine Phosphatase 1B (PTP1B) Using State of Art: An In Silico and In Vitro Tactics.
- Author
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Saeed M, Shoaib A, Tasleem M, Alabdallah NM, Alam MJ, Asmar ZE, Jamal QMS, Bardakci F, Alqahtani SS, Ansari IA, and Badraoui R
- Subjects
- Allosteric Regulation, Humans, Structure-Activity Relationship, Enzyme Inhibitors chemistry, Hypoglycemic Agents chemistry, Molecular Docking Simulation, Naphthoquinones chemistry, Protein Tyrosine Phosphatase, Non-Receptor Type 1 antagonists & inhibitors, Protein Tyrosine Phosphatase, Non-Receptor Type 1 chemistry
- Abstract
Diabetes mellitus is a multifactorial disease that affects both developing and developed countries and is a major public health concern. Many synthetic drugs are available in the market, which counteracts the associated pathologies. However, due to the propensity of side effects, there is an unmet need for the investigation of safe and effective drugs. This research aims to find a novel phytoconstituent having diminished action on blood glucose levels with the least side effects. Shikonin is a naturally occurring naphthoquinone dying pigment obtained by the roots of the Boraginaceae family. Besides its use as pigments, it can be used as an antimicrobial, anti-inflammatory, and anti-tumor agent. This research aimed to hypothesize the physicochemical and phytochemical properties of Shikonin's in silico interaction with protein tyrosine phosphate 1B, as well as it's in vitro studies, in order to determine its potential anti-diabetic impact. To do so, molecular docking experiments with target proteins were conducted to assess their anti-diabetic ability. Analyzing associations with corresponding amino acids revealed the significant molecular interactions between Shikonin and diabetes-related target proteins. In silico pharmacokinetics and toxicity profile of Shikonin using ADMET Descriptor, Toxicity Prediction, and Calculate Molecular Properties tools from Biovia Discovery Studio v4.5. Filter by Lipinski and Veber Rule's module from Biovia Discovery Studio v4.5 was applied to assess the drug-likeness of Shikonin. The in vitro studies exposed that Shikonin shows an inhibitory potential against the PTP1B with an IC50 value of 15.51 µM. The kinetics studies revealed that it has a competitive inhibitory effect (Ki = 7.5 M) on the enzyme system, which could be useful in the production of preventive and therapeutic agents. The findings of this research suggested that the Shikonin could be used as an anti-diabetic agent and can be used as a novel source for drug delivery.
- Published
- 2021
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35. Nano-therapeutic strategies to target coronavirus.
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Rauf MA, Tasleem M, Bhise K, Tatiparti K, Sau S, and Iyer AK
- Abstract
The coronaviruses have caused severe acute respiratory syndrome (SARS), the Middle East respiratory syndrome (MERS), and the more recent coronavirus pneumonia (COVID-19). The global COVID-19 pandemic requires urgent action to develop anti-virals, new therapeutics, and vaccines. In this review, we discuss potential therapeutics including human recombinant ACE2 soluble, inflammatory cytokine inhibitors, and direct anti-viral agents such as remdesivir and favipiravir, to limit their fatality. We also discuss the structure of the SARS-CoV-2, which is crucial to the timely development of therapeutics, and previous attempts to generate vaccines against SARS-CoV and MERS-CoV. Finally, we provide an overview of the role of nanotechnology in the development of therapeutics as well as in the diagnosis of the infection. This information is key for computational modeling and nanomedicine-based new therapeutics by counteracting the variable proteins in the virus. Further, we also try to effectively share the latest information about many different aspects of COVID-19 vaccine developments and possible management to further scientific endeavors., Competing Interests: The authors declare that there is no conflict of interest., (© 2021 The Authors. VIEW published by Shanghai Fuji Technology Consulting Co., Ltd, authorized by Professional Community of Experimental Medicine, National Association of Health Industry and Enterprise Management (PCEM) and John Wiley & Sons Australia, Ltd.)
- Published
- 2021
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36. Intermingling of gut microbiota with brain: Exploring the role of probiotics in battle against depressive disorders.
- Author
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Tyagi P, Tasleem M, Prakash S, and Chouhan G
- Subjects
- Bacteria, Brain, Humans, Depressive Disorder prevention & control, Gastrointestinal Microbiome, Probiotics
- Abstract
Depression is a debilitating psychiatric ailment which exerts disastrous effects on one's mental and physical health. Depression is accountable for augmentation of various life-threatening maladies such as neurodegenerative anomalies, cardiovascular diseases and diabetes. Depressive episodes are recurrent, pose a negative impact on life quality, decline life expectancy and enhance suicidal tendencies. Anti-depression chemotherapy displays marked adverse effects and frequent relapses. Thus, newer therapeutic interventions to prevent or combat depression are desperately required. Discovery of gut microbes as our mutualistic partner was made a long time ago and it is surprising that their functions still continue to expand and as of yet many are still to be uncovered. Experimental studies have revealed astonishing role of gut commensals in gut-brain signaling, immune homeostasis and hormonal regulation. Now, it is a well-established fact that gut microbes can alleviate stress or depression associated symptoms by modulating brain functions. Here in, we provide an overview of physiological alleyways involved in cross-talk between gut and brain, part played by probiotics in regulation of these pathways and use of probiotic bacteria as psychobiotics in various mental or depressive disorders., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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37. Gamma irradiation protect the developing wheat endosperm from oxidative damage by balancing the trade-off between the defence network and grains quality.
- Author
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Kumar RR, Hasija S, Goswami S, Tasleem M, Sakhare A, Kumar S, Bakshi S, Jambhulkar S, Rai GK, Singh B, Singh GP, Pathak H, Viswanathan C, and Praveen S
- Subjects
- Edible Grain enzymology, Edible Grain physiology, Endosperm enzymology, Endosperm physiology, Food Irradiation, Heat-Shock Response radiation effects, Hydrogen Peroxide metabolism, Seeds enzymology, Seeds physiology, Seeds radiation effects, Starch biosynthesis, Edible Grain radiation effects, Endosperm radiation effects, Gamma Rays, Oxidative Stress radiation effects, Triticum
- Abstract
Gamma irradiation has been reported to modulate the biochemical and molecular parameters associated with the tolerance of plant species under biotic/ abiotic stress. Wheat is highly sensitive to heat stress (HS), as evident from the decrease in the quantity and quality of the total grains. Here, we studied the effect of pre-treatment of wheat dry seeds with different doses of gamma irradiation (0.20, 0.25 and 0.30 kGy) on tolerance level and quality of developing wheat endospermic tissue under HS (38 °C, 1 h; continuously for three days). Expression analysis of genes associated with defence and starch metabolism in developing grains showed maximum transcripts of HSP17 (in response to 0.25 kGy + HS) and AGPase (under 0.30 kGy), as compared to control. Gamma irradiation was observed to balance the accumulation of H
2 O2 by enhancing the activities of SOD and GPx in both the cvs. under HS. Gamma irradiation was observed to stabilize the synthesis of starch and amylose by regulating the activities of AGPase, SSS and α-amylase under HS. The appearance of isoforms of gliadins (α, β, γ, ω) were observed more in gamma irradiated seeds (0.20 kGy), as compared to control. Gamma irradiation (0.25 kGy in HD3118 & 0.20 kGy in HD3086) was observed to have positive effect on the width, length and test seed weight of the grains under HS. The information generated in present investigation provides easy, cheap and user-friendly technology to mitigate the effect of terminal HS on the grain-development process of wheat along with development of robust seeds with high nutrient density., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2019
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38. Quantitative proteomic analysis reveals novel stress-associated active proteins (SAAPs) and pathways involved in modulating tolerance of wheat under terminal heat.
- Author
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Kumar RR, Singh K, Ahuja S, Tasleem M, Singh I, Kumar S, Grover M, Mishra D, Rai GK, Goswami S, Singh GP, Chinnusamy V, Rai A, and Praveen S
- Subjects
- Plant Proteins metabolism, Proteome metabolism, Transcriptome, Triticum metabolism, Gene Expression Regulation, Plant, Heat-Shock Response, Plant Proteins genetics, Proteome genetics, Thermotolerance, Triticum genetics
- Abstract
Terminal heat stress has detrimental effect on the growth and yield of wheat. Very limited information is available on heat stress-associated active proteins (SAAPs) in wheat. Here, we have identified 159 protein groups with 4271 SAAPs in control (22 ± 3 °C) and HS-treated (38 °C, 2 h) wheat cvs. HD2985 and HD2329 using iTRAQ. We identified 3600 proteins to be upregulated and 5825 proteins to be downregulated in both the wheat cvs. under HS. We observed 60.3% of the common SAAPs showing upregulation in HD2985 (thermotolerant) and downregulation in HD2329 (thermosusceptible) under HS. GO analysis showed proton transport (molecular), photosynthesis (biological), and ATP binding (cellular) to be most altered under HS. Most of the SAAPs identified were observed to be chloroplast localized and involved in photosynthesis. Carboxylase enzyme was observed most abundant active enzymes in wheat under HS. An increase in the degradative isoenzymes (α/β-amylases) was observed, as compared to biosynthesis enzymes (ADP-glucophosphorylase, soluble starch synthase, etc.) under HS. Transcript profiling showed very high relative fold expression of HSP17, CDPK, Cu/Zn SOD, whereas downregulation of AGPase, SSS under HS. The identified SAAPs can be used for targeted protein-based precision wheat-breeding program for the development of 'climate-smart' wheat.
- Published
- 2019
- Full Text
- View/download PDF
39. Comparative Study of Outcome of Endoscopic Myringoplasty in Active and Inactive Mucosal Chronic Otitis Media Patients.
- Author
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Tasleem M, Rahman A, and Aslam M
- Abstract
The objective of this study was to compare graft uptake and hearing improvement in active and inactive mucosal chronic otitis media patients after endoscopic myringoplasty. This is prospective study conducted at a government medical college and hospital from February 2014 to August 2015. A total of 40 active (wet) ears with mucoid discharge and 40 inactive (dry) ears (at least 6 weeks dry before surgery) with mucosal chronic otitis media were operated on by endoscopic myringoplasty by transcanal approach. Graft uptake and hearing gain rates 3 months after surgery were compared for both groups. Endoscopic myringoplasty using temporal fascia graft via transcanal approach was used. The graft take rate was 77.5% for the active ear group and 85% for the inactive ear group. The hearing gain rate was 82.5% for the inactive ear group and 72.5% for the active ear group. Differences were found to be statistically insignificant for both graft uptake and hearing gain. The success of endoscopic myringoplasty is not adversely affected by the presence of mucoid ear discharge at the time of surgery, and outcomes are comparable to those of the operation done for inactive ear.
- Published
- 2017
- Full Text
- View/download PDF
40. Human Disease Insight: An integrated knowledge-based platform for disease-gene-drug information.
- Author
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Tasleem M, Ishrat R, Islam A, Ahmad F, and Hassan MI
- Subjects
- Computational Biology, Humans, Databases, Factual, Disease genetics, Drug Therapy, Pharmacology
- Abstract
The scope of the Human Disease Insight (HDI) database is not limited to researchers or physicians as it also provides basic information to non-professionals and creates disease awareness, thereby reducing the chances of patient suffering due to ignorance. HDI is a knowledge-based resource providing information on human diseases to both scientists and the general public. Here, our mission is to provide a comprehensive human disease database containing most of the available useful information, with extensive cross-referencing. HDI is a knowledge management system that acts as a central hub to access information about human diseases and associated drugs and genes. In addition, HDI contains well-classified bioinformatics tools with helpful descriptions. These integrated bioinformatics tools enable researchers to annotate disease-specific genes and perform protein analysis, search for biomarkers and identify potential vaccine candidates. Eventually, these tools will facilitate the analysis of disease-associated data. The HDI provides two types of search capabilities and includes provisions for downloading, uploading and searching disease/gene/drug-related information. The logistical design of the HDI allows for regular updating. The database is designed to work best with Mozilla Firefox and Google Chrome and is freely accessible at http://humandiseaseinsight.com., (Copyright © 2015 King Saud Bin Abdulaziz University for Health Sciences. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
41. Probing HSA-ionic liquid interactions by spectroscopic and molecular docking methods.
- Author
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Kumari M, Maurya JK, Tasleem M, Singh P, and Patel R
- Subjects
- Binding Sites, Humans, Hydrogen Bonding, Hydrophobic and Hydrophilic Interactions, Ionic Liquids metabolism, Molecular Docking Simulation, Protein Binding, Protein Structure, Tertiary, Serum Albumin metabolism, Spectrometry, Fluorescence, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Thermodynamics, Ionic Liquids chemistry, Serum Albumin chemistry
- Abstract
Herein, we report the interaction of synthesized pyrrolidinium based ionic liquid, N-butyl-N-methyl-2-oxopyrrolidinium bromide (BMOP) with human serum albumin (HSA). The BMOP was characterized by using (1)H NMR, (13)C NMR and FT-IR techniques. The critical micelle concentration (cmc) of BMOP was confirmed by surface tension, conductivity and contact angle measurements. The interactions between HSA and BMOP were studied by steady-state and time-resolved fluorescence, UV-visible, FT-IR spectroscopic and molecular docking methods. The steady-state fluorescence spectra showed that BMOP quenched the fluorescence of HSA through combined quenching mechanism. Corresponding thermodynamic parameters viz. Gibbs free energy change (ΔG), entropy change (ΔS) and enthalpy change (ΔH) illustrated that the binding process was spontaneous and entropy driven. It is also suggested that hydrophobic forces play a key role in the binding of BMOP to HSA. In addition, the pyrene probe analysis again suggests the involvement of hydrophobic interaction in HSA-BMOP complex formation. Surface tension profile showed that the cmc value of BMOP in the presence of HSA is higher than the cmc value of pure BMOP. The FT-IR results show a conformational change in the secondary structure of HSA upon the addition of BMOP. The molecular docking result indicated that BMOP binds with HSA at hydrophobic pocket domain IIA with hydrophobic and hydrogen bond interactions in which hydrophobic interactions are dominating., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
42. Functional annotation of putative hypothetical proteins from Candida dubliniensis.
- Author
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Kumar K, Prakash A, Tasleem M, Islam A, Ahmad F, and Hassan MI
- Subjects
- Carrier Proteins genetics, Cell Adhesion Molecules genetics, Hydrolases genetics, Membrane Proteins genetics, Oxidoreductases genetics, Peroxiredoxins genetics, Phosphoric Monoester Hydrolases genetics, Phosphotransferases genetics, Sequence Analysis, DNA, Transferases genetics, Candida genetics, Fungal Proteins genetics, Molecular Sequence Annotation
- Abstract
An extensive analysis of C. dubliniensis proteomics data showed that ~22% protein are conserved hypothetical proteins (HPs) whose function is still not determined precisely. Analysis of gene sequence of HPs provides a platform to establish sequence-function relationships to a more profound understanding of the molecular machinery of organisms at systems level. Here we have combined the latest versions of bioinformatics tools including, protein family, motifs, intrinsic features from the amino acid sequence, sequence-function relationship, pathway analysis, etc. to assign a precise function to HPs for which no any experimental information is available. Our results show that 27 HPs have well defined functions and we categorized them as enzyme, nucleic acid binding, transport protein, etc. Five HPs showed adhesin character that is likely to be essential for the survival of yeast and pathogenesis. We also addressed issues related to the sub-cellular localization and signal peptide identification which provides an idea about its colocalization and function. The outcome of the present study may facilitate better understanding of mechanism of virulence, drug resistance, pathogenesis, adaptability to host, tolerance for host immune response, and drug discovery for treatment of C. dubliniensis infections., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
43. in silico-prediction of downstream WRKY interacting partners of MAPK3 in Brassica.
- Author
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Giri P, Taj G, Tasleem M, and Kumar A
- Abstract
Protein-Protein interactions (PPIs) are vital to most biological processes thus the identification of PPIs is of primary importance. Here, we endeavor to identify the downstream interacting partners of (BjMPK3P) in Brassica juncea using the docking approach. Out of 63 and 37 members of BrWRKY and BnWRKY transcription factors, 50 and 29 members are showing interactions with BjMPK3P respectively while the rest are showing non-interaction. Twenty two WRKY members are common to both the species. Using minimal sequence motif search as well as through docking approach several novel WRKY interacting proteins were also reported in the present study which need to be confirmed by in vitro kinase assay. Together, the results obtained essentially enhance our knowledge of the MAPK interacting protein network and provide a valuable research resource for developing a nearly important link between pathogen-activated MAPK signaling pathways and downstream transcriptional programming.
- Published
- 2013
- Full Text
- View/download PDF
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