235 results on '"Tetsuro Shinada"'
Search Results
2. Analysis of vitamin D receptor binding affinities of enzymatically synthesized triterpenes including ambrein and unnatural onoceroids
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Daijiro Ueda, Natsu Matsuda, Yuka Takaba, Nami Hirai, Mao Inoue, Taichi Kameya, Tohru Abe, Nao Tagaya, Yasuhiro Isogai, Yoshito Kakihara, Florian Bartels, Mathias Christmann, Tetsuro Shinada, Kaori Yasuda, and Tsutomu Sato
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Medicine ,Science - Abstract
Abstract Onoceroids are a rare family of triterpenes. One representative onoceroid is ambrein, which is the main component of ambergris used as a traditional medicine. We have previously identified the onoceroid synthase, BmeTC, in Bacillus megaterium and succeeded in creating ambrein synthase by introducing mutations into BmeTC. Owing to the structural similarity of ambrein to vitamin D, a molecule with diverse biological activities, we hypothesized that some of the activities of ambergris may be induced by the binding of ambrein to the vitamin D receptor (VDR). We demonstrated the VDR binding ability of ambrein. By comparing the structure–activity relationships of triterpenes with both the VDR affinity and osteoclastic differentiation-promoting activity, we observed that the activity of ambrein was not induced via the VDR. Therefore, some of the activities of ambergris, but not all, can be attributed to its VDR interaction. Additionally, six unnatural onoceroids were synthesized using the BmeTC reactions, and these compounds exhibited higher VDR affinity than that of ambrein. Enzymatic syntheses of onoceroid libraries will be valuable in creating a variety of bioactive compounds beyond ambergris.
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- 2024
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3. A [4Fe-4S] cluster resides at the active center of phosphomevalonate dehydratase, a key enzyme in the archaeal modified mevalonate pathway
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Mutsumi Komeyama, Kohsuke Kanno, Hiroyuki Mino, Yoko Yasuno, Tetsuro Shinada, Tomokazu Ito, and Hisashi Hemmi
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iron–sulfur cluster ,archaea ,mevalonate pathway ,electron paramagnetic resonance ,isoprenoid ,Microbiology ,QR1-502 - Abstract
The recent discovery of the archaeal modified mevalonate pathway revealed that the fundamental units for isoprenoid biosynthesis (isopentenyl diphosphate and dimethylallyl diphosphate) are biosynthesized via a specific intermediate, trans-anhydromevalonate phosphate. In this biosynthetic pathway, which is unique to archaea, the formation of trans-anhydromevalonate phosphate from (R)-mevalonate 5-phosphate is catalyzed by a key enzyme, phosphomevalonate dehydratase. This archaea-specific enzyme belongs to the aconitase X family within the aconitase superfamily, along with bacterial homologs involved in hydroxyproline metabolism. Although an iron–sulfur cluster is thought to exist in phosphomevalonate dehydratase and is believed to be responsible for the catalytic mechanism of the enzyme, the structure and role of this cluster have not been well characterized. Here, we reconstructed the iron–sulfur cluster of phosphomevalonate dehydratase from the hyperthermophilic archaeon Aeropyrum pernix to perform biochemical characterization and kinetic analysis of the enzyme. Electron paramagnetic resonance, iron quantification, and mutagenic studies of the enzyme demonstrated that three conserved cysteine residues coordinate a [4Fe-4S] cluster—as is typical in aconitase superfamily hydratases/dehydratases, in contrast to bacterial aconitase X-family enzymes, which have been reported to harbor a [2Fe-2S] cluster.
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- 2023
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4. Juvenile hormone III skipped bisepoxide is widespread in true bugs (Hemiptera: Heteroptera)
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Keiji Matsumoto, Toyomi Kotaki, Hideharu Numata, Tetsuro Shinada, and Shin G. Goto
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hemiptera ,heteroptera ,juvenile hormone ,juvenile hormone iii skipped bisepoxide ,true bugs ,ultra-performance liquid chromatography coupled with tandem mass spectrometry ,Science - Abstract
Juvenile hormone (JH) plays important roles in almost every aspect of insect development and reproduction. JHs are a group of acyclic sesquiterpenoids, and their farnesol backbone has been chemically modified to generate a homologous series of hormones in some insect lineages. JH III (methyl farnesoate, 10,11-epoxide) is the most common JH in insects, but Lepidoptera (butterflies and moths) and ‘higher’ Diptera (suborder: Brachycera; flies) have developed their own unique JHs. Although JH was first proposed in the hemipteran suborder Heteroptera (true bugs), the chemical identity of the heteropteran JH was only recently determined. Furthermore, recent studies revealed the presence of a novel JH, JH III skipped bisepoxide (JHSB3), in some heteropterans, but its taxonomic distribution remains largely unknown. In the present study, we investigated JHSB3 production in 31 heteropteran species, covering almost all heteropteran lineages, through ultra-performance liquid chromatography coupled with tandem mass spectrometry. We found that all of the focal species produced JHSB3, indicating that JHSB3 is widespread in heteropteran bugs and the evolutionary occurrence of JHSB3 ascends to the common ancestor of Heteroptera.
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- 2021
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5. A novel cyclic peptide (Naturido) modulates glia-neuron interactions in vitro and reverses ageing-related deficits in senescence-accelerated mice.
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Shinichi Ishiguro, Tetsuro Shinada, Zhou Wu, Mayumi Karimazawa, Michimasa Uchidate, Eiji Nishimura, Yoko Yasuno, Makiko Ebata, Piyamas Sillapakong, Hiromi Ishiguro, Nobuyoshi Ebata, Junjun Ni, Muzhou Jiang, Masanobu Goryo, Keishi Otsu, Hidemitsu Harada, and Koichi Suzuki
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Medicine ,Science - Abstract
The use of agents that target both glia and neurons may represent a new strategy for the treatment of ageing disorders. Here, we confirmed the presence of the novel cyclic peptide Naturido that originates from a medicinal fungus (Isaria japonica) grown on domestic silkworm (Bombyx mori). We found that Naturido significantly enhanced astrocyte proliferation and activated the single copy gene encoding the neuropeptide VGF and the neuron-derived NGF gene. The addition of the peptide to the culture medium of primary hippocampal neurons increased dendrite length, dendrite number and axon length. Furthermore, the addition of the peptide to primary microglial cultures shifted CGA-activated microglia towards anti-inflammatory and neuroprotective phenotypes. These findings of in vitro glia-neuron interactions led us to evaluate the effects of oral administration of the peptide on brain function and hair ageing in senescence-accelerated mice (SAMP8). In vivo analyses revealed that spatial learning ability and hair quality were improved in Naturido-treated mice compared with untreated mice, to the same level observed in the normal ageing control (SAMR1). These data suggest that Naturido may be a promising glia-neuron modulator for the treatment of not only senescence, but also Alzheimer's disease and other neurodegenerative diseases.
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- 2021
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6. Isolation of biologically active peptides from the venom of Japanese carpenter bee, Xylocopa appendiculata
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Hiroko Kawakami, Shin G. Goto, Kazuya Murata, Hideaki Matsuda, Yasushi Shigeri, Tomohiro Imura, Hidetoshi Inagaki, and Tetsuro Shinada
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Xylocopa appendiculata ,Carpenter bee ,Venom peptides ,Solitary bee ,Mass spectrometry analysis ,Arctic medicine. Tropical medicine ,RC955-962 ,Toxicology. Poisons ,RA1190-1270 ,Zoology ,QL1-991 - Abstract
Abstract Background Mass spectrometry-guided venom peptide profiling is a powerful tool to explore novel substances from venomous animals in a highly sensitive manner. In this study, this peptide profiling approach is successfully applied to explore the venom peptides of a Japanese solitary carpenter bee, Xylocopa appendiculata (Hymenoptera: Apoidea: Apidae: Anthophila: Xylocopinae: Xylocopini). Although interesting biological effects of the crude venom of carpenter bees have been reported, the structure and biological function of the venom peptides have not been elucidated yet. Methods The venom peptide profiling of the crude venom of X. appendiculata was performed by matrix-assisted laser desorption/ionization-time of flight mass spectroscopy. The venom was purified by a reverse-phase HPLC. The purified peptides were subjected to the Edman degradation, MS/MS analysis, and/or molecular cloning methods for peptide sequencing. Biological and functional characterization was performed by circular dichroism analysis, liposome leakage assay, and antimicrobial, histamine releasing and hemolytic activity tests. Results Three novel peptides with m/z 16508, 1939.3, and 1900.3 were isolated from the venom of X. appendiculata. The peptide with m/z 16508 was characterized as a secretory phospholipase A2 (PLA2) homolog in which the characteristic cysteine residues as well as the active site residues found in bee PLA2s are highly conserved. Two novel peptides with m/z 1939.3 and m/z 1900.3 were named as Xac-1 and Xac-2, respectively. These peptides are found to be amphiphilic and displayed antimicrobial and hemolytic activities. The potency was almost the same as that of mastoparan isolated from the wasp venom. Conclusion We found three novel biologically active peptides in the venom of X. appendiculata and analyzed their molecular functions, and compared their sequential homology to discuss their molecular diversity. Highly sensitive mass analysis plays an important role in this study.
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- 2017
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7. Structure Determination of a Natural Juvenile Hormone Isolated from a Heteropteran Insect
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Toyomi Kotaki, Tetsuro Shinada, and Hideharu Numata
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Zoology ,QL1-991 - Abstract
Juvenile hormone (JH), which occurs in several forms in different insects, is one of the most important insect hormones. The structure of JH in Heteroptera has not been elucidated until recently, although insects in this suborder have long been used as experimental animals for JH research. Here we review the structure determination of a novel JH in a stink bug, Plautia stali, which was named juvenile hormone III skipped bisepoxide [JHSB3: methyl (2R,3S,10R)-2,3;10,11-bisepoxyfarnesoate], based on the arrangement of two epoxides at C2,3 and C10,11 with a skipped double bond at C6,7.
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- 2012
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8. Juvenile hormone identification in the cabbage bug Eurydema rugosa
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Aya Kodama, Keiji Matsumoto, Tetsuro Shinada, and Shin G. Goto
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Insect Science ,General Medicine ,Agronomy and Crop Science - Abstract
Juvenile hormone (JH) plays a pivotal role in almost every aspect of insect development and reproduction. The chemical structure of the JH in heteropteran species has long remained elusive until methyl (2R,3S,10R)-2,3;10,11-bisepoxyfarnesoate, commonly named as juvenile hormone III skipped bisepoxide (JHSB3), was isolated from Plautia stali (Hemiptera: Heteroptera: Pentatomidae). Recently, several groups reported the presence of JHSB3 in other heteropteran species. However, most of the studies paid no attention to the determination of the relative and absolute structure of the JH. In this study, we investigated the JH of the cabbage bug Eurydema rugosa (Hemiptera: Heteroptera: Pentatomidae), known as a pest for wild and cultivated crucifers. JHSB3 was detected in the hexane extract from the corpus allatum (CA) product using a chiral ultraperformance liquid chromatography-tandem mass spectrometer (UPLC-MS/MS) which can inform the absolute stereochemistry of the JH. Its stereoisomers were not detected. Topical application of the synthetic JHSB3 to the last instar nymphs inhibited their metamorphosis and induced nymphal-type colouration of the dorsal abdomen in a dose-dependent manner. Additionally, the topical application of JHSB3 effectively terminated summer and winter diapauses in females. These results indicate that the JH of E. rugosa is JHSB3. Although individuals in summer and winter diapauses are physiologically distinct in E. rugosa, the results suggest that the physiological differences between these diapauses are based, not on the responsiveness to JH, but on the processes governing activation of the CA or on its upstream cascades.
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- 2023
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9. Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis
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Sumire Kurosawa, Hironori Okamura, Ayako Yoshida, Takeo Tomita, Yusuke Sone, Fumihito Hasebe, Tetsuro Shinada, Hirosato Takikawa, Saori Kosono, and Makoto Nishiyama
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Molecular Medicine ,General Medicine ,Biochemistry - Published
- 2023
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10. Recent Progress in the Synthesis of Deuterated Aldehyde
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Tetsuro Shinada, Atsushi Nakayama, Hironori Okamura, and Yoko Yasuno
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General Chemistry - Published
- 2022
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11. Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination
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Sumire Kurosawa, Fumihito Hasebe, Hironori Okamura, Ayako Yoshida, Kenichi Matsuda, Yusuke Sone, Takeo Tomita, Tetsuro Shinada, Hirosato Takikawa, Tomohisa Kuzuyama, Saori Kosono, and Makoto Nishiyama
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Colloid and Surface Chemistry ,Sulfates ,Mitomycin ,Aziridines ,DNA ,General Chemistry ,Biochemistry ,Catalysis - Abstract
Natural products containing an aziridine ring, such as mitomycin C and azinomycin B, exhibit antitumor activities by alkylating DNA via their aziridine rings; however, the biosynthetic mechanisms underlying the formation of these rings have not yet been elucidated. We herein investigated the biosynthesis of vazabitide A, the structure of which is similar to that of azinomycin B, and demonstrated that Vzb10/11, with no similarities to known enzymes, catalyzed the formation of the aziridine ring via sulfate elimination. To elucidate the detailed reaction mechanism, crystallization of Vzb10/11 and the homologous enzyme, AziU3/U2, in the biosynthesis of azinomycin B was attempted, and the structure of AziU3/U2, which had a new protein fold overall, was successfully determined. The structural analysis revealed that these enzymes adjusted the dihedral angle between the amino group and the adjacent sulfate group of the substrate to almost 180° and enhanced the nucleophilicity of the C6-amino group temporarily, facilitating the S
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- 2022
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12. Synthesis of Drimane-8α,11-diol Using Terpene Cyclase from Bacillus megaterium
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Keita Ozawa, Yuki Yamamoto, Eigo Fukuda, Seiya Endo, Atsushi Nakayama, Yoko Yasuno, Daijiro Ueda, Tsutomu Sato, and Tetsuro Shinada
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General Chemistry - Published
- 2023
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13. Formylation Reaction of Amines Using N-Formylcarbazole
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Bubwoong Kang, Yuki Shimizu, Yusaku Tamura, Eigo Fukuda, Ken-ichiro Hamamoto, Yuichiro Uchida, Yoko Yasuno, Atsushi Nakayama, Tetsuya Satoh, Masaki Kuse, and Tetsuro Shinada
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Drug Discovery ,General Chemistry ,General Medicine - Published
- 2022
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14. Stereoselective Synthesis of Dehydroamino Acids and Its Application to the Synthesis of Nitrogen-containing Natural Products
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Yoko Yasuno, Hironori Okamura, and Tetsuro Shinada
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Organic Chemistry - Published
- 2022
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15. Stereoselective Syntheses of trans-Anhydromevalonic Acid and trans-Anhydromevalonyl Group-Containing Natural Products
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Atsushi Nakayama, Yoko Yasuno, Yuki Yamamoto, Kai Saito, Kohei Kitsuwa, Hironori Okamura, and Tetsuro Shinada
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Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2022
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16. Ligand-Dependant Selective Synthesis of Mono- and Dialkenylcarbazoles through Rhodium(III)-Catalyzed C-H Alkenylation
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Rikuto Tanaka, Shiho Ochiai, Asumi Sakai, Yoshinosuke Usuki, Bubwoong Kang, Tetsuro Shinada, and Tetsuya Satoh
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Organic Chemistry ,General Chemistry ,Biochemistry - Abstract
The C-H alkenylation of N-acetylcarbazoles proceeds smoothly at the C1-position in the presence of a cationic Cp*Rh(III) catalyst to produce 1-alkenylcarbazoles. The use of a cationic CpERh(III) catalyst enables further alkenylation to give 1,8-dialkenylcarbazoles. The direct alkenylation procedure in combination with the ready removal of the acetyl directing group provides a straightforward synthetic pathway to 1- and/or 8-alkenyl-N-H-carbazole derivatives. One of 1-alkenyl-N-H-carbazoles obtained by the present C-H alkenylation/deacetylation exhibits solvatochromism.
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- 2023
17. Total Synthesis and Structure Confirmation of trans-Anhydromevalonate-5-phosphate, a Key Biosynthetic Intermediate of the Archaeal Mevalonate Pathway
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Kohei Kitsuwa, Kai Saito, Hisashi Hemmi, Mutsumi Komeyama, Hironori Okamura, Yoko Yasuno, Tetsuro Shinada, and Atsushi Nakayama
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Pharmacology ,chemistry.chemical_classification ,biology ,Chemistry ,Stereochemistry ,Organic Chemistry ,Pharmaceutical Science ,Total synthesis ,Cleavage (embryo) ,biology.organism_classification ,Terpenoid ,Analytical Chemistry ,Enzyme ,Complementary and alternative medicine ,Dehydratase ,Drug Discovery ,Molecular Medicine ,Aeropyrum pernix ,Phosphorylation ,Mevalonate pathway - Abstract
The mevalonate pathway is an upstream terpenoid biosynthetic route of terpenoids for providing the two five-carbon units, dimethylallyl diphosphate, and isopentenyl diphosphate. Recently, trans-anhydromevalonate-5-phosphate (tAHMP) was isolated as a new biosynthetic intermediate of the archaeal mevalonate pathway. In this study, we would like to report the first synthesis of tAHMP and its enzymatic transformation using one of the key enzymes, mevalonate-5-phosphate dehydratase from a hyperthermophilic archaeon, Aeropyrum pernix. Starting from methyl tetrolate, a Cu-catalyzed allylation provided an E-trisubstituted olefin in a stereoselective manner. The resulting E-olefin was transformed to tAHMP by cleavage of the olefin and phosphorylation. The structure of the synthetic tAHMP was unambiguously determined by NOESY analysis.
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- 2021
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18. Concise Synthesis of Isocoumarin-3-carboxylic Acid Esters.
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Atsushi Nakayama, Ken-ichiro Hamamoto, Ibuki Fujiwara, Eigo Fukuda, Keita Ozawa, Seiya Endo, Rika Yamasaki, Hidemitsu Yamanaka, Yusaku Tamura, Yuki Yamamoto, and Tetsuro Shinada
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A concise synthesis of isocoumarin-3-carboxylic acid ester derivatives has been developed by a Pd catalyzed one-pot fluorocarbonylation/lactonization/ß-elimination cascade reaction starting from easily prepared hydroxyesters. ortho-Bromobenzaldehyde derivatives were converted to 2-chloro-1-hydroxy-2-arylpropionic acid esters in two steps via Darzens condensation. The resulting 1-hydroxypropionates were smoothly converted to isocoumarin-3-carboxylic acid esters in good yields by the newly developed cascade reaction in an efficient manner. The synthetic utility was demonstrated by the first total synthesis of penicipyran C. [ABSTRACT FROM AUTHOR]
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- 2023
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19. Synthesis of Indenones through Rhodium(III)-catalyzed [3+2] Annulation Utilizing a Recyclable Carbazolyl Leaving Group
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Tetsuya Satoh, Yoshinosuke Usuki, Shiho Ochiai, Tetsuro Shinada, Asumi Sakai, and Bubwoong Kang
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Coupling (electronics) ,Annulation ,010405 organic chemistry ,Chemistry ,Polymer chemistry ,Leaving group ,chemistry.chemical_element ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Catalysis ,Rhodium - Abstract
The rhodium(III)-catalyzed annulative coupling of 9-benzoylcarbazoles with internal alkynes proceeds efficiently through ortho C–H and C–N bond cleavages. This reaction provides direct access to va...
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- 2021
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20. Ovicidal activity of juvenile hormone mimics in the bean bug, Riptortus pedestris
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Takao Nakagawa, Ken Miura, Chieka Minakuchi, Takahiro Shiotsuki, Mayuko Ogino, Tetsuro Shinada, Akiya Jouraku, Yoko Yasuno, and Shouya Naruse
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0106 biological sciences ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Embryogenesis ,Methoprene ,Embryo ,Embryonic Stage ,Insect ,010501 environmental sciences ,Biology ,01 natural sciences ,Andrology ,010602 entomology ,chemistry.chemical_compound ,Titer ,chemistry ,Insect Science ,Juvenile hormone ,Pyriproxyfen ,0105 earth and related environmental sciences ,media_common - Abstract
Insect juvenile hormone (JH) mimics (JHMs) are known to have ovicidal effects if applied to adult females or eggs. Here, we examined the effects of exogenous JHMs on embryonic development of the bean bug, Riptortus pedestris. The expression profiles of JH early response genes and JH biosynthetic enzymes indicated that JH titer was low for the first 3 days of the egg stage and increased thereafter. Application of JH III skipped bisepoxide (JHSB3) or JHM on Day 0 eggs when JH titer was low caused reduced hatchability, and the embryos mainly arrested in mid- or late embryonic stage. Application of JHMs on Day 5 eggs also resulted in an arrest, but this was less effective compared with Day 0 treatment. Interestingly, ovicidal activity of synthetic JHMs was much lower than that of JHSB3. This study will contribute to developing novel insecticides that are selective among insect species.
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- 2021
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21. Reconstitution of a Highly Reducing Type II PKS System Reveals 6π-Electrocyclization Is Required for o-Dialkylbenzene Biosynthesis
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Tetsuro Shinada, Makoto Nishiyama, Wei Li Thong, Tomohisa Kuzuyama, Satoshi Yuzawa, and Jie Zhang
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biology ,Chemistry ,Stereochemistry ,General Chemistry ,Isomerase ,010402 general chemistry ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Streptomyces ,Catalysis ,Cofactor ,0104 chemical sciences ,chemistry.chemical_compound ,Acyl carrier protein ,Colloid and Surface Chemistry ,Biosynthesis ,Polyketide synthase ,Gene cluster ,biology.protein ,Moiety - Abstract
Natural products containing an o-dialkylbenzene moiety exhibit a wide variety of bioactivities, including antibacterial, antifungal, antitumor, and antiangiogenic activities. However, the biosynthetic scheme of the o-dialkylbenzene moiety remains unclear. In this study, we identified the biosynthetic gene cluster (BGC) of compounds 1 and 2 in Streptomyces sp. SANK 60404, which contains a rare o-dialkylbenzene moiety, and successfully reconstituted the biosynthesis of 1 using 22 recombinant enzymes in vitro. Our study established a biosynthetic route for the o-tolyl group within the o-dialkylbenzene moiety, where the triene intermediate 3 loaded onto a unique acyl carrier protein (ACP) is elongated by a specific ketosynthase-chain length factor pair of a type II polyketide synthase system with the aid of a putative isomerase to be termed "electrocyclase" and a thioesterase-like enzyme in the BGC. The C2-elongated all-trans diketo-triene intermediate is subsequently isomerized to the 6Z configuration by the electrocyclase to allow intramolecular 6π-electrocyclization, followed by coenzyme FAD/FMN-dependent dehydrogenation. Bioinformatics analysis showed that the key genes are all conserved in BGCs of natural products containing an o-dialkylbenzene moiety, suggesting that the proposed biosynthetic scheme is a common strategy to form o-dialkylbenzenes in nature.
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- 2021
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22. Stereoselective Synthesis of (2 S ,6 R )‐Diamino‐(5 R ,7)‐dihydroxy‐heptanoic Acid (DADH): An Unusual Amino Acid from Streptomyces sp. SANK 60404
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Hironori Okamura, Atsushi Nakayama, Yoko Yasuno, Tetsuro Shinada, and Hirosato Takikawa
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chemistry.chemical_classification ,biology ,Stereochemistry ,Non-proteinogenic amino acids ,Organic Chemistry ,Heptanoic acid ,Enantioselective synthesis ,biology.organism_classification ,Streptomyces ,Amino acid ,chemistry.chemical_compound ,chemistry ,Stereoselectivity ,Physical and Theoretical Chemistry - Published
- 2021
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23. Selective oxidation of alcohol-d1 to aldehyde-d1 using MnO2
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Yusaku Tamura, Hironori Okamura, Kohei Kitsuwa, Yuki Yamamoto, Yoko Yasuno, Keita Ozawa, Katsushi Kumadaki, Tetsuro Shinada, and Atsushi Nakayama
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chemistry.chemical_classification ,chemistry ,General Chemical Engineering ,Alcohol oxidation ,Organic chemistry ,General Chemistry ,Aldehyde - Abstract
A facile method for deutrium incorporation into aldehydes by mild reduction of NaBD4 of aldehydes and MnO2 oxidation (98% D) is disclosed.
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- 2021
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24. Diverse Aromatic Metabolites in the Solitary Tunicate Cnemidocarpa irene
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Yoko Yasuno, Ryuichi Sakai, Tetsuro Shinada, Masaki J. Fujita, and Kei Miyako
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Circular dichroism ,food.ingredient ,Pharmaceutical Science ,Biopterin ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,food ,Biosynthesis ,Drug Discovery ,Pterin ,Receptor ,Pharmacology ,biology ,010405 organic chemistry ,Organic Chemistry ,Metabolism ,Cnemidocarpa ,biology.organism_classification ,0104 chemical sciences ,Tunicate ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,chemistry ,Biochemistry ,Molecular Medicine - Abstract
Fourteen aromatic metabolites (6-19) were isolated from an aqueous extract of the solitary tunicate Cnemidocarpa irene collected in Hokkaido, Japan. The structures of the metabolites were determined based on the spectroscopic interpretations, including one- and two-dimensional NMR, mass spectra, UV, and circular dichroism data. The biopterin analogue 10 modulated the behavior of mice after intracerebroventricular injection and showed a weak affinity to ionotropic glutamate receptor subtypes. Analyses of fluorescent coelomic fluid of the tunicate revealed that pterin 12 was responsible for the fluorescence of the blood cells, while β-carbolines 1 and 3 were fluorescent compounds in the serum. The metabolic profiles in adults, juveniles, larvae, and eggs of the animal differed substantially, suggesting that the metabolism of the animal, especially biosynthesis of aromatic secondary metabolites, changes over different life stages.
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- 2020
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25. Biosynthetic Reaction Mechanism of Terpene Synthases by Using Deuterium Labelled Acyclic Terpenes
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Tetsuro Shinada
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Terpene ,Reaction mechanism ,Chemistry ,Organic Chemistry ,Organic chemistry ,Deuterium labelled - Published
- 2020
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26. N-Acylcarbazole as a Selective Transamidation Reagent
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Tetsuya Satoh, Yoko Yasuno, Hironori Okamura, Masaki Kuse, Bubwoong Kang, Asumi Sakai, and Tetsuro Shinada
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chemistry.chemical_compound ,010405 organic chemistry ,Chemistry ,Reagent ,Amide ,Molecule ,lipids (amino acids, peptides, and proteins) ,General Chemistry ,010402 general chemistry ,Selectivity ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences - Abstract
N-acylation reaction offers an opportunity to develop an efficient synthesis of amide group-containing molecules. We found that N-acyl carbazoles showed remarkable selectivity in transamidation. St...
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- 2020
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27. Synthesis of Allene-Containing Apocarotenoids by Cross-Coupling Strategy
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Hideki Hashimoto, Kazuhiko Sakaguchi, Naoto Kinashi, Tetsuro Shinada, Yuto Nishioka, Takahiro Nishimura, Nao Yukihira, and Shigeo Katsumura
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Coupling (electronics) ,chemistry.chemical_compound ,chemistry ,Stereochemistry ,Allene ,Paracentrone ,Organic Chemistry ,Apocarotenoid ,Total synthesis ,Conjugated polyene ,Conjugated system ,Catalysis ,Boronic acid - Abstract
The stereocontrolled total synthesis of the allene and carbonyl conjugated apocarotenoids, paracentrone and 19-hexanoyloxyparacentrone 3-acetate, was achieved by sequential cross-coupling reactions using boronic acid ester and iodine- or tin-substituted C5 dienes, which were the building blocks for the elongation of the conjugated polyene systems at both terminals.
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- 2020
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28. Structure Determination of Juvenile Hormone from Chagas Disease Vectors,Rhodnius prolixusandTriatoma infestans
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Yoko Yasuno, Keiji Matsumoto, Tsuyoshi Hayashi, Tetsuro Shinada, Shin G. Goto, and Kohei Yasuda
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Chagas disease ,biology ,010405 organic chemistry ,Chemistry ,media_common.quotation_subject ,fungi ,Heteroptera ,Zoology ,General Chemistry ,Insect ,010402 general chemistry ,biology.organism_classification ,medicine.disease ,01 natural sciences ,0104 chemical sciences ,Reduviidae ,parasitic diseases ,Juvenile hormone ,Triatoma infestans ,medicine ,Rhodnius prolixus ,media_common ,Hormone - Abstract
The juvenile hormone (JH) is a key hormone of insects. In this study, the first structure determination of JH of Rhodnius prolixus (Heteroptera; Reduviidae) known historically as the insect for whi...
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- 2020
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29. Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate
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Tomoyuki Nishi, Daijiro Ueda, Masahiro Fujihashi, Tetsuro Shinada, Kazuya Asada, Tsutomu Sato, Kei Sugawara, Rafaella Stepanova, Hayato Inagi, Kunio Miki, and Yoko Yasuno
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0301 basic medicine ,Spectrometry, Mass, Electrospray Ionization ,Reaction mechanism ,Protein Conformation ,Stereochemistry ,Proton Magnetic Resonance Spectroscopy ,Bacillus ,Crystal structure ,Carbocation ,Crystallography, X-Ray ,01 natural sciences ,Biochemistry ,Substrate Specificity ,Catalysis ,Terpene ,03 medical and health sciences ,Protein structure ,Bacillus alcalophilus ,Carbon-13 Magnetic Resonance Spectroscopy ,chemistry.chemical_classification ,Alkyl and Aryl Transferases ,biology ,010405 organic chemistry ,Chemistry ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,Enzyme ,Molecular Medicine - Abstract
Terpene synthases (TS) are classified into two broad types, Class I and II, based on the chemical strategy for initial carbocation formation and motif sequences of the catalytic site. We have recently identified a new class of enzymes, Class IB, showing the acceptability of long (C₂₀–C₃₅) prenyl-diphosphates as substrates and no amino acid sequence homology with known TS. Conversion of long prenyl-diphosphates such as heptaprenyl-diphosphate (C₃₅) is unusual and has never been reported for Class I and II enzymes. Therefore, the characterization of Class IB enzymes is crucial to understand the reaction mechanism of the extensive terpene synthesis. Here, we report the crystal structure bound with a substrate surrogate and biochemical analysis of a Class IB TS, using the enzyme from Bacillus alcalophilus (BalTS). The structure analysis revealed that the diphosphate part of the substrate is located around the two characteristic Asp-rich motifs, and the hydrophobic tail is accommodated in a unique hydrophobic long tunnel, where the C₃₅ prenyl-diphosphate, the longest substrate of BalTS, can be accepted. Biochemical analyses of BalTS showed that the enzymatic property, such as Mg^2⁺ dependency, is similar to those of Class I enzymes. In addition, a new cyclic terpene was identified from BalTS reaction products. Mutational analysis revealed that five of the six Asp residues in the Asp-rich motifs and two His residues are essential for the formation of the cyclic skeleton. These results provided a clue to consider the application of the unusual large terpene synthesis by Class IB enzymes.
- Published
- 2020
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- View/download PDF
30. A stereoisomer of JHSB3 with 10S-configuration, 10S-JHSB3, biosynthesized by the corpus allatum of the brown marmorated stink bug, Halyomorpha halys (Hemiptera: Pentatomidae)
- Author
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Tetsuro Shinada, Yumi Ando, Kanako Kaihara, Keiji Matsumoto, Toyomi Kotaki, and Kumi Misaki
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0106 biological sciences ,0301 basic medicine ,biology ,Zoology ,Pentatomidae ,biology.organism_classification ,01 natural sciences ,Hemiptera ,010602 entomology ,03 medical and health sciences ,030104 developmental biology ,Nezara viridula ,Insect Science ,Juvenile hormone ,Instar ,Corpus allatum ,Brown marmorated stink bug ,Nymph - Abstract
The products released by the corpus allatum (CA), an endocrine gland producing juvenile hormone (JH), were analyzed in three species of stink bugs. Liquid chromatography–mass spectrometry (LC–MS) analysis of the CA products from female adults of Halyomorpha halys (Stal), Nezara viridula (Linnaeus), and Nezara antennata Scott (Hemiptera: Pentatomidae) revealed that the CA biosynthesized JH III skipped bisepoxyside (JHSB3) in all three species. In H. halys, in addition to JHSB3, the CA also produced its stereoisomer, 10S-JHSB3. A bioassay focusing on the number of antennal segments was adopted to examine biological activity of these products. When last instar nymphs were treated with either of the two JHs, they emerged as adults bearing nymphal type antennae with four segments in a dose-dependent fashion, indicating that both JHSB3 and 10S-JHSB3 had the JH activity in H. halys. Therefore, for the first time, 10S-JHSB3 in H. halys was found to be a naturally occurring JH molecule with 10S-configuration.
- Published
- 2020
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31. Insight into the mechanism of geranyl-β-phellandrene formation catalyzed by Class IB terpene synthases
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Shogo Iwakata, Kazuya Asada, Tomoyuki Nishi, Rafaella Stepanova, So Shinoda, Daijiro Ueda, Masahiro Fujihashi, Yoko Yasuno, Tetsuro Shinada, and Tsutomu Sato
- Subjects
Alkyl and Aryl Transferases ,Terpenes ,Organic Chemistry ,General Medicine ,Cyclohexane Monoterpenes ,Molecular Biology ,Applied Microbiology and Biotechnology ,Biochemistry ,Catalysis ,Analytical Chemistry ,Biotechnology - Abstract
Terpene synthase (TS) from Bacillus alcalophilus (BalTS) is the only Class IB TS for which a 3D structure has been elucidated. Recently, geranyl-β-phellandrene, a novel cyclic diterpene, was identified as a product of BalTS in addition to the acyclic β-springene. In the present study, we have provided insight into the mechanism of geranyl-β-phellandrene formation. Deuterium labeling experiments revealed that the compound is produced via a 1,3-hydride shift. In addition, nonenzymatic reactions using divalent metal ions were performed. The enzyme is essential for the geranyl-β-phellandrene formation. Furthermore, BalTS variants targeting tyrosine residues enhanced the yield of geranyl-β-phellandrene and the proportion of the compound of the total products. It was suggested that the expansion of the active site space may allow the conformation of the intermediates necessary for cyclization. The present study describes the first Class IB TSs to successfully alter product profiles while retaining high enzyme activity.
- Published
- 2022
32. Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes
- Author
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Ryuhei Nagata, Hironori Suemune, Masaya Kobayashi, Tetsuro Shinada, Kazuo Shin‐ya, Makoto Nishiyama, Tomoya Hino, Yusuke Sato, Tomohisa Kuzuyama, and Shingo Nagano
- Subjects
Prenylation ,Biological Products ,Farnesyl-Diphosphate Farnesyltransferase ,Carbazoles ,Quinones ,General Chemistry ,General Medicine ,Dimethylallyltranstransferase ,Catalysis ,Substrate Specificity - Abstract
Some enzymes annotated as squalene synthase catalyze the prenylation of carbazole-3,4-quinone-containing substrates in bacterial secondary metabolism. Their reaction mechanisms remain unclear because of their low sequence similarity to well-characterized aromatic substrate prenyltransferases (PTs). We determined the crystal structures of the carbazole PTs, and these revealed that the overall structure is well superposed on those of squalene synthases. In contrast, the stacking interaction between the prenyl donor and acceptor substrates resembles those observed in aromatic substrate PTs. Structural and mutational analyses suggest that the Ile and Asp residues are essential for the hydrophobic and hydrophilic interactions with the carbazole-3,4-quinone moiety of the prenyl acceptor, respectively, and a deprotonation mechanism of an intermediary σ-complex involving a catalytic triad is proposed. Our results provide a structural basis for a new subclass of aromatic substrate PTs.
- Published
- 2021
33. Total Synthesis and Structure Confirmation of
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Yoko, Yasuno, Atsushi, Nakayama, Kai, Saito, Kohei, Kitsuwa, Hironori, Okamura, Mutsumi, Komeyama, Hisashi, Hemmi, and Tetsuro, Shinada
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Hemiterpenes ,Organophosphorus Compounds ,Molecular Structure ,Terpenes ,Mevalonic Acid ,Aeropyrum ,Hydro-Lyases ,Organophosphates - Abstract
The mevalonate pathway is an upstream terpenoid biosynthetic route of terpenoids for providing the two five-carbon units, dimethylallyl diphosphate, and isopentenyl diphosphate. Recently
- Published
- 2021
34. γ-C (sp3)–H bond functionalisation of α,β-unsaturated amides through an umpolung strategy
- Author
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Tetsuro Shinada, Masafumi Ueda, Okiko Miyata, Erika Futaki, Motohiro Yasui, and Norihiko Takeda
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chemistry.chemical_classification ,Nucleophile ,Chemistry ,Hydrogen bond ,Organic Chemistry ,Regioselectivity ,Physical and Theoretical Chemistry ,Biochemistry ,Medicinal chemistry ,Bond cleavage ,Alkyl ,Umpolung - Abstract
The nucleophilic γ-phenylation and γ-alkylation of α,β-unsaturated amides have been developed. This umpolung reaction allows the regioselective introduction of phenyl and alkyl groups to a vinylketene N,O-acetal, which is generated in situ from an α,β-unsaturated N-alkoxyamide, followed by N–O bond cleavage in a two-step, one-pot process.
- Published
- 2020
- Full Text
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35. First Synthesis of All-trans-polyprenol with 100 Carbons
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Yoko Yasuno, Yusuke Totsuka, and Tetsuro Shinada
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010405 organic chemistry ,Stereochemistry ,All trans ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Sulfone ,Coupling (electronics) ,chemistry.chemical_compound ,Polyprenol ,Dolichol ,chemistry ,Product (mathematics) - Abstract
All-trans polyprenols consisting of one hundred carbons (C100) have been synthesized for the first time via the sulfone coupling of C45 and C55 fragments. The resulting coupling product with four b...
- Published
- 2019
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36. Catalytic Asymmetric Hydrogenation of Dehydroamino Acid Esters with Biscarbamate Protection and Its Application to the Synthesis of xCT Inhibitors
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Yuuka Wakabayashi, Keiko Shimamoto, Tetsuro Shinada, Iho Mizutani, Yuki Sueuchi, Yoko Yasuno, and Nozomi Yasuo
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chemistry.chemical_classification ,010405 organic chemistry ,Organic Chemistry ,Asymmetric hydrogenation ,Enantioselective synthesis ,General Chemistry ,Optically active ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,Amino acid ,chemistry - Abstract
Catalytic asymmetric hydrogenation of dehydroamino acid esters with biscarbamate protection was examined for the first time to prepare optically active amino acids. The new method was successfully applied to the synthesis of new cystine-glutamate exchanger inhibitors.
- Published
- 2019
- Full Text
- View/download PDF
37. Selective oxidation of alcohol
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Hironori, Okamura, Yoko, Yasuno, Atsushi, Nakayama, Katsushi, Kumadaki, Kohei, Kitsuwa, Keita, Ozawa, Yusaku, Tamura, Yuki, Yamamoto, and Tetsuro, Shinada
- Abstract
The selective oxidation of alcohol
- Published
- 2021
38. Reconstitution of a Highly Reducing Type II PKS System Reveals 6π-Electrocyclization Is Required for
- Author
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Jie, Zhang, Satoshi, Yuzawa, Wei Li, Thong, Tetsuro, Shinada, Makoto, Nishiyama, and Tomohisa, Kuzuyama
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Biological Products ,Bacterial Proteins ,Cyclization ,Multigene Family ,Acyl Carrier Protein ,Benzene ,Polyketide Synthases ,Streptomyces ,Anti-Bacterial Agents - Abstract
Natural products containing an
- Published
- 2021
39. Juvenile hormone as a causal factor for maternal regulation of diapause in a wasp
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Ayumu Mukai, Genyu Mano, Lauren Des Marteaux, Tetsuro Shinada, and Shin G. Goto
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光周性 ,History ,Polymers and Plastics ,Photoperiod ,Wasps ,Diapause, Insect ,Biochemistry ,Diapause ,Industrial and Manufacturing Engineering ,Juvenile Hormones ,Jewel wasp ,RNA干渉 ,juvenile hormone acid O-methyltransferase (jhamt) ,Maternal effect ,Insect Science ,RNAi ,Animals ,Photoperiodism ,幼若ホルモン酸メチル基転移酵素 ,Business and International Management ,Nasonia vitripennis ,Molecular Biology ,キョウソヤドリコバチ - Abstract
Most temperate multivoltine insects enter diapause, a hormonally controlled developmental suspension, in response to seasonal photoperiodic and/or thermal cues. Some insect species exhibit maternal regulation of diapause in which developmental trajectories of the offspring are determined by mothers in response to environmental cues that the mother received. Although maternally regulated diapause is common among insects, the maternal endocrinological mechanisms are largely veiled. To approach this issue, we used the jewel wasp Nasonia vitripennis, which produces non-diapause-destined offspring under long days and diapause-destined offspring under short days or low temperatures. Comparative transcriptomics of these wasps revealed possible involvement of the juvenile hormone (JH) biosynthetic cascade in maternal diapause regulation. The expression of juvenile hormone acid O-methyltransferase (jhamt) was typically downregulated in short-day wasps, and this was reflected by a reduction in haemolymph JH concentrations. RNAi targeted at jhamt reduced haemolymph JH concentration and induced wasps to produce diapause-destined offspring even under long days. In addition, topical application of JH suppressed the production of diapause-destined offspring under short days or low temperatures. These results indicate that diapause in N. vitripennis is determined by maternal jhamt expression and haemolymph JH concentration in response to day length. We therefore report a novel role for JH in insect seasonality.
- Published
- 2022
40. Diverse Aromatic Metabolites in the Solitary Tunicate
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Kei, Miyako, Yoko, Yasuno, Tetsuro, Shinada, Masaki J, Fujita, and Ryuichi, Sakai
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Magnetic Resonance Spectroscopy ,Behavior, Animal ,Molecular Structure ,Circular Dichroism ,Tyramine ,Nucleosides ,Receptors, Ionotropic Glutamate ,Biopterin ,Hydrocarbons, Aromatic ,Mass Spectrometry ,Pterins ,Mice ,Larva ,Animals ,Humans ,Spectrophotometry, Ultraviolet ,Cholinesterase Inhibitors ,Urochordata ,Carbolines ,HeLa Cells ,Injections, Intraventricular ,Ovum - Abstract
Fourteen aromatic metabolites (
- Published
- 2020
41. Mild Organic Base-Catalyzed Primary Alcohol-Selective Aroylation Reaction Using N-Aroylcarbazoles for Underexplored Prodrugs
- Author
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Masaki Kuse, Yoko Yasuno, Asumi Sakai, Maiko Moriguchi, Rubi Nakashima, Tetsuro Shinada, Yasuaki Morita, Tetsuya Sato, Yuki Shimizu, and Bubwoong Kang
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Primary (chemistry) ,Organic base ,Carbazole ,Acylation ,Regioselective Reaction ,Primary alcohol ,Prodrug ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Reagent ,Site-Selective Reaction ,Prodrugs ,Medicinal Chemistry ,Twisted Amide - Abstract
We report a highly primary alcohol-selective aroylation reaction using N-aroylcarbazoles (NAroCs). The aroylationproceeded smoothly in the presence of DBU, which most likely works as a general base catalyst in the reaction system. The synthetic utility was displayed in the primary alcohol-selective aroylation of complex drug molecules and natural products to their prodrugs. Stoichiometrically generated carbazole, the starting material of NAroCs could be easily recovered. We also established safer multigram and multidecagram scale preparation methods of NAroCs, which are easy-to-handle bench-stable reagents.
- Published
- 2020
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42. Molecular Basis for Sesterterpene Diversity Produced by Plant Terpene Synthases
- Author
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Juan He, Yong Wang, Zhixi Liu, Ikuro Abe, Jianxu Li, Takaaki Mitsuhashi, Tetsuro Shinada, Peng Zhang, Yihua Ma, Tsutomu Sato, Hai-Li Liu, Hongwei Liu, Qingwen Chen, Yuting Zhang, and Guodong Wang
- Subjects
crystal structure ,ATP synthase ,biology ,Plant terpene ,Chemistry ,Stereochemistry ,sesterterpene ,Mutagenesis ,Brassicaceae ,terpene synthase ,Cell Biology ,Plant Science ,biology.organism_classification ,Biochemistry ,Terpenoid ,Terpene synthase ,Helix ,biology.protein ,Arabidopsis thaliana ,cyclization mechanism ,Molecular Biology ,terpenoid ,Biotechnology ,Research Article - Abstract
Class I terpene synthase (TPS) generates bioactive terpenoids with diverse backbones. Sesterterpene synthase (sester-TPS, C25), a branch of class I TPSs, was recently identified in Brassicaceae. However, the catalytic mechanisms of sester-TPSs are not fully understood. Here, we first identified three nonclustered functional sester-TPSs (AtTPS06, AtTPS22, and AtTPS29) in Arabidopsis thaliana. AtTPS06 utilizes a type-B cyclization mechanism, whereas most other sester-TPSs produce various sesterterpene backbones via a type-A cyclization mechanism. We then determined the crystal structure of the AtTPS18–FSPP complex to explore the cyclization mechanism of plant sester-TPSs. We used structural comparisons and site-directed mutagenesis to further elucidate the mechanism: (1) mainly due to the outward shift of helix G, plant sester-TPSs have a larger catalytic pocket than do mono-, sesqui-, and di-TPSs to accommodate GFPP; (2) type-A sester-TPSs have more aromatic residues (five or six) in their catalytic pocket than classic TPSs (two or three), which also determines whether the type-A or type-B cyclization mechanism is active; and (3) the other residues responsible for product fidelity are determined by interconversion of AtTPS18 and its close homologs. Altogether, this study improves our understanding of the catalytic mechanism of plant sester-TPS, which ultimately enables the rational engineering of sesterterpenoids for future applications., Sesterterpenoids, a relatively new group of terpenoids, are structurally diverse and widely distributed in bacteria, fungi, and the plant kingdom. However, the enzymatic mechanism of sesterterpene synthase (sester-TPS), the first committed biosynthesis step, remains obscure. This study reveals the critical amino acids controlling the substrate and product specificity of plant sester-TPS by determining the first crystal structure of the sester-TPS–FSPP complex.
- Published
- 2020
43. γ-C (sp
- Author
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Erika, Futaki, Norihiko, Takeda, Motohiro, Yasui, Tetsuro, Shinada, Okiko, Miyata, and Masafumi, Ueda
- Abstract
The nucleophilic γ-phenylation and γ-alkylation of α,β-unsaturated amides have been developed. This umpolung reaction allows the regioselective introduction of phenyl and alkyl groups to a vinylketene N,O-acetal, which is generated in situ from an α,β-unsaturated N-alkoxyamide, followed by N-O bond cleavage in a two-step, one-pot process.
- Published
- 2020
44. Improved total synthesis of (±)-Tetragocarbone A
- Author
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Yoko Yasuno, Tetsuro Shinada, and Eiji Nishimura
- Subjects
Stereochemistry ,Stingless bee ,Phloroglucinol ,Total synthesis ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Desymmetrization ,Stereocenter ,chemistry.chemical_compound ,Drug Discovery ,全合成 ,Tetragonula carbonaria ,biology ,010405 organic chemistry ,Organic Chemistry ,Propolis ,biology.organism_classification ,フロログルシノール ,0104 chemical sciences ,chemistry ,Stereoselectivity ,Hydroxyl-directing reaction - Abstract
Stereoselective total synthesis of (±)-tetragocarbone A isolated from the propolis of an Australian stingless bee, Tetragonula carbonaria, has been developed by focusing on the latent symmetry of 1. The requisite 1R*, 3R*, 6S* stereogenic centers were selectively installed by hydroxy group directing reactions including the late stage desymmetrization of the 1,3-diketone. The target natural product was successfully prepared in 12 steps from phloroglucinol on 300 mg.
- Published
- 2018
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45. Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass
- Author
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Kunio Miki, Daijiro Ueda, Kazuma Fuku, Tomoyuki Nishi, Yoko Yasuno, Masahiro Fujihashi, Yuma Tanaka, Mizuki Murakami, Daisuke Yamamoto, Ai Sekihara, Tetsuro Shinada, and Tsutomu Sato
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,ATP synthase ,biology ,Functional analysis ,Chemistry ,General Chemistry ,Crystal structure ,Lyase ,Subclass ,Terpene ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Enzyme ,Biosynthesis ,Biochemistry ,biology.protein - Abstract
Thousands of terpenes have been identified to date. However, only two classes of enzymes are known to be involved in their biosynthesis, and each class has characteristic amino-acid motifs. We recently identified a novel large-terpene (C25/C30/C35) synthase, which shares no motifs with known enzymes. To elucidate the molecular mechanism of this enzyme, we determined the crystal structure of a large-β-prene synthase from B. alcalophilus (BalTS). Surprisingly, the overall structure of BalTS is similar to that of the α-domain of class I terpene synthases although their primary structures are totally different from each other. Two novel aspartate-rich motifs, DYLDNLxD and DY(F, L, W)IDxxED, are identified, and mutations of any one of the aspartates eliminate its enzymatic activity. The present work leads us to propose a new subclass of terpene synthases, class IB, which is probably responsible for large-terpene biosynthesis.
- Published
- 2018
- Full Text
- View/download PDF
46. Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization
- Author
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Tetsuro Shinada, Yuma Karita, Makoto Nishiyama, Takeo Tomita, Yoko Yasuno, Tomohisa Kuzuyama, and Masaya Kobayashi
- Subjects
0301 basic medicine ,Tris ,Reaction mechanism ,ATP synthase ,biology ,Stereochemistry ,010405 organic chemistry ,Monoterpene ,General Chemistry ,General Medicine ,010402 general chemistry ,Pyrophosphate ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Terpene ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Biosynthesis ,Intramolecular force ,biology.protein - Abstract
We report the three-dimensional structure of cyclolavandulyl diphosphate (CLPP) synthase (CLDS), which consecutively catalyzes the condensation of two molecules of dimethylallyl diphosphate (DMAPP) followed by cyclization to form a cyclic monoterpene, CLPP. The structures of apo-CLDS and CLDS in complex with Tris, pyrophosphate, and Mg2+ ion were refined at 2.00 A resolution and 1.73 A resolution, respectively. CLDS adopts a typical fold for cis-prenyl synthases and forms a homo-dimeric structure. An in vitro reaction using a regiospecifically 2H-substituted DMAPP substrate revealed the intramolecular proton transfer mechanism of the CLDS reaction. The CLDS structure and structure-based mutagenesis provide mechanistic insights into this unprecedented terpene synthase. The combination of structural and mechanistic insights advances the knowledge of intricate terpene synthase-catalyzed reactions.
- Published
- 2017
- Full Text
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47. Upregulation of Juvenile Hormone Titers in Female Drosophila melanogaster Through Mating Experiences and Host Food Occupied by Eggs and Larvae
- Author
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Yasuhiro Sugime, Toru Miura, Tetsuro Shinada, Dai Watanabe, Nobuaki K. Tanaka, and Yoko Yasuno
- Subjects
0301 basic medicine ,animal structures ,Oviposition ,Period (gene) ,Zoology ,Biology ,03 medical and health sciences ,Downregulation and upregulation ,Copulation ,Animals ,Mating ,Ovum ,Larva ,Host (biology) ,Ecology ,fungi ,biology.organism_classification ,Up-Regulation ,Juvenile Hormones ,Titer ,Drosophila melanogaster ,030104 developmental biology ,Gene Expression Regulation ,Juvenile hormone ,Female ,Animal Science and Zoology - Abstract
Juvenile hormone (JH) plays a crucial role in the determination of developmental timing in insects. In Drosophila melanogaster, reports indicate that JH titers are the highest immediately following eclosion and that the mating experience increases the titers in females. However, the titers have not been successively measured for an extended period of time after eclosion. This study reveals that JH titers are increased after eclosion in virgin females when supplied with food that is occupied by eggs and larvae as well as in mated females. With the presence of eggs and larvae, food induced the virgin females to lay unfertilized eggs. When combined with previous work indicating that females are attracted to such food where they prefer to lay eggs, these results suggest that flies can prepare themselves to lay eggs by changing the titers of JH under the presence of growing larvae, ensuring that the food is an appropriate place to oviposit.
- Published
- 2017
- Full Text
- View/download PDF
48. Acid-catalyzed chirality-transferring intramolecular Friedel-Crafts cyclization of α-hydroxy-α-alkenylsilanes
- Author
-
Naoko Ikeda, Kazuhiko Sakaguchi, Takahiro Nishimura, Shoma Ariyoshi, Shunnichi Kubota, Tetsuro Shinada, Yasufumi Ohfune, Wataru Akagi, and Masato Higashino
- Subjects
Silylation ,010405 organic chemistry ,Metals and Alloys ,General Chemistry ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Medicinal chemistry ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,chemistry ,Asymmetric carbon ,Intramolecular force ,Materials Chemistry ,Ceramics and Composites ,Lewis acids and bases ,Benzene ,Chirality (chemistry) ,Friedel–Crafts reaction - Abstract
Acid-catalyzed intramolecular Friedel–Crafts cyclization of optically active α-hydroxy-α-alkenylsilanes possessing a benzene ring (>99% ee) with TMSOTf as a Lewis acid gave enantio-enriched tetrahydronaphthalenes (up to 98% ee). The silyl group attached to the chiral carbon played a crucial role in the chirality transfer.
- Published
- 2019
49. Stereocontrolled Synthesis of Paracentrone
- Author
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Kazuhiko Sakaguchi, Naoto Kinashi, You Yano, Tetsuro Shinada, Yohei Toriyama, Yuto Nishioka, Natsumi Oku, and Shigeo Katsumura
- Subjects
010405 organic chemistry ,Stereochemistry ,Allene ,Paracentrone ,Organic Chemistry ,Total synthesis ,Conjugated polyene ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Apocarotenoid ,Organic chemistry ,Fucoxanthin ,Boronic acid - Abstract
The stereocontrolled total synthesis of the C31 apocarotenoid paracentrone was achieved by sequential cross-coupling reactions using C5 boronic acid ester and iodo-substituted dienes, which were newly developed building blocks for elongation of the conjugated polyene systems at both their terminals.
- Published
- 2016
- Full Text
- View/download PDF
50. Structure–activity relationship study at C9 position of kaitocephalin
- Author
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Motomi Konishi, Yasushi Shigeri, Makoto Hamada, Tetsuro Shinada, Yuya Yoshida, Yoko Yasuno, Toshifumi Akizawa, Yasufumi Ohfune, and Keiko Shimamoto
- Subjects
0301 basic medicine ,Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Receptors, N-Methyl-D-Aspartate ,Biochemistry ,Serine ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Eupenicillium ,Humans ,Structure–activity relationship ,Pyrroles ,Molecular Biology ,Alanine ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,Molecular Structure ,Organic Chemistry ,Amino acid ,030104 developmental biology ,chemistry ,Molecular Medicine ,NMDA receptor ,Ionotropic glutamate receptor ,030217 neurology & neurosurgery ,Kaitocephalin ,Ionotropic effect - Abstract
Kaitocephalin (KCP) isolated from Eupenicillium shearii PF1191 is an unusual amino acid natural product in which serine, proline, and alanine moieties are liked with carbon-carbon bonds. KCP exhibits potent and selective binding affinity for one of the ionotropic glutamate receptor subtypes, NMDA receptors (Ki=7.8nM). In this study, new structure-activity relationship studies at C9 of KCP were implemented. Eleven new KCP analogs with different substituents at C9 were prepared and employed for binding affinity tests using native ionotropic glutamate receptors. Replacement of the 3,5-dichloro-4-hydroxybenzoyl group of KCP with a 3-phenylpropionyl group resulted in significant loss of binding affinity for NMDARs (Ki=1300nM), indicating an indispensable role of the aromatic ring of KCP in the potent and selective binding to NMDARs. Other analogs showed potent binding affinity in a range of 11-270nM. These findings would directly link to develop useful chemical tools toward imaging and labeling of NMDARs.
- Published
- 2016
- Full Text
- View/download PDF
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