Search

Mass fish kills capture the world’s attention and their frequency is increasing worldwide. The sudden death of many millions of native fish in the Darling–Baaka River in Australia in 2018–19 was a catalyst for the 11 articles in this special issue. Collectively, they advance our understanding of how to manage these events, dealing with: ecological impacts and recovery; technologies and approaches for prediction, preparedness and response; and the role of the public in preparing and responding to these catastrophic events.

Recent environmental flow management in the Murray–Darling basin, south-eastern Australia, has centred on restoring natural flooding regimes to meet ecological requirements, including the promotion of native fish recruitment, despite uncertainty about the effectiveness of managed environmental flooding. This study investigated recruitment responses of small-bodied native and non-native fish species to a large natural flood, supported by managed environmental flows in the Macquarie Marshes of the Murray–Darling basin. We surveyed the fish community within the heavily regulated, dryland floodplain system of the marshes, the year after breaking of the Millennium drought (2002–2009). During the spring–summer of 2010, the Macquarie Marshes experienced a one-in-10-year flood, sustained by two environmental flow allocations, flooding 174,000 ha of floodplain. Five native species were collected across the nine study sites. Two non-native species were particularly abundant during the flood, outnumbering the five native species in a ratio of 32:1, with Gambusia holbrooki the most abundant species, comprising 87% of all native and non-native individuals captured. There was no marked effect of flood stage on the total abundance of small-bodied native or non-native fishes, but the composition of the fish community varied between surveys of the rising and falling phases of the flood. We did not capture any larval or post-larval fish despite using a variety of suitable sampling methods. The lack of larvae in the Macquarie Marshes, following extensive flooding, most likely reflected the overall poor condition of native fish communities and low standing stocks of mature fish, resulting from deleterious long-term effects of flow regulation exacerbated by drought. A gradual rebuilding of ecosystem health, fish health, and resilient fish populations by active management of environmental flows to impose more natural boom and bust dynamics may be needed to restore fish reproduction and recruitment in this regulated river.

Food web subsidies from external sources ("allochthony") can support rich biological diversity and high secondary and tertiary production in aquatic systems, even those with low rates of primary production. However, animals vary in their degree of dependence on these subsidies. We examined dietary sources for aquatic animals restricted to refugial habitats (waterholes) during the dry season in Australia's wet-dry tropics, and show that allochthony is strongly size dependent. While small-bodied fishes and invertebrates derived a large proportion of their diet from autochthonous sources within the waterhole (phytoplankton, periphyton, or macrophytes), larger animals, including predatory fishes and crocodiles, demonstrated allochthony from seasonally inundated floodplains, coastal zones or the surrounding savanna. Autochthony declined roughly 10% for each order of magnitude increase in body size. The largest animals in the food web, estuarine crocodiles (Crocodylus porosus), derived ~80% of their diet from allochthonous sources. Allochthony enables crocodiles and large predatory fish to achieve high biomass, countering empirically derived expectations for negative density vs. body size relationships. These results highlight the strong degree of connectivity that exists between rivers and their floodplains in systems largely unaffected by river regulation or dams and levees, and how large iconic predators could be disproportionately affected by these human activities.

Rivers and wetland ecosystems are degraded by diversions of water upstream. In response, governments have reallocated water to flood wetlands, mimicking natural inundation of habitats known to drive booms in native freshwater fish production. Individual flow events allow the ecological outcomes of restoration efforts to be evaluated, in order to improve ongoing adaptive management. This study investigated the population size and recruitment responses of seven native and three alien fish species to widespread floodplain inundation at 15 sites across the Macquarie Marshes, a regulated wetland in Australia's Murray–Darling Basin. Flooding during the late winter, when water temperatures were 4 to 12.6 °C below the spawning threshold for native fish species present in the system, promoted reproduction and recruitment by alien species, which were significantly more abundant than native species after flooding. Fish assemblage structure also differed significantly between main channel and floodplain habitats, with macrophytes, pH, emergent vegetation, flow velocity and small wood debris accounting for 59% of spatiotemporal variation in fish assemblage structure. Strong correlations were identified between the length of spawning window and post-flood abundance of young-of-year and recruit size classes in the most abundant alien and native fish species. Future environmental flows, particularly those that inundate floodplain habitats, need to be delivered in light of the confounding effects of flow–temperature coupling and the lower spawning temperature thresholds of alien species. Copyright © 2014 John Wiley & Sons, Ltd.

[Extract] The amphibian disease chytridiomycosis, caused by the pathogen Batrachochytrium dendrobatidis (Bd), has dramatically affected amphibians, causing population declines in over 200 species worldwide (Fisher et al. 2009). The disease is widespread, driving amphibian declines in North America (Muths et al. 2003; Briggs et al. 2005), Australia (Berger et al. 1998), Central America (Lips et al. 2006) and South America (Catenazzi et al. 2011). The variation in susceptibility to disease and mortality seen among host species, populations and locations is at least partially driven by interplay between external environmental and internal host-specific factors (Woodhams et al. 2007; Searle et al. 2011; Blaustein et al. 2012). While at a single location some species may be locally extirpated, others may persist (Lips et al. 2006). Amphibian infection prevalence and mortality rates due to chytridiomycosis are correlated with ambient environmental conditions: being highest during cooler months and at higher elevations (Berger et al. 1998; Woodhams and Alford 2005; Kriger and Hero 2008).

Fish in arid-zone rivers are dependent on waterholes for refuge during drought. In heavily regulated systems, water extraction for human use has the potential to exacerbate drought conditions and increase the reliance of fish on refugia. This study investigated this hypothesis by surveying fish communities at 25 sites in the Ramsar listed Macquarie Marshes, before and after a 23-GL environmental flow event. Although such flows are central to restoration efforts in the Murray-Darling Basin, limited water availability often forces water managers to make difficult triage decisions regarding which ecological assets to service. This study aimed to provide an update on the current health and status of native fish populations in the Macquarie Marshes and discuss how small flows may best be delivered to meet their ecological needs, particularly during droughts. Eight native species were collected, but they were outnumbered by three alien species by more than 3:1. Post-flooding recruitment was observed in most species and mean species richness of sampling sites increased significantly, as fish moved out of drought refugia to utilize a more diverse array of microhabitats. This study presents a conceptual model of fish use of refugia and recommends that key low-flow refugia be targeted for remediation efforts.

Many species from the family Poeciliidae have been transported around the world by the aquarium trade, often establishing populations in areas far outside their natural range. The one‐spot livebearer, Phalloceros caudimaculatus is one such poeciliid species. In March 2002, a nonindigenous population of P. caudimaculatus was discovered at Collaroy, in the Sydney metropolitan area, the first record of this species in eastern Australia. Following this discovery, electrofishing and light‐trap surveys were conducted at the site, and dip‐netting and visual surveys were conducted in surrounding water bodies. P. caudimaculatus was widespread and abundant at the Collaroy site, but no further populations were discovered. Another pest poeciliid species, Gambusia holbrooki, originally present at the site, was absent and, although the mechanism remains unclear, may have been displaced by P. caudimaculatus. Both P. caudimaculatus and G. holbrooki share the characteristics of successful invasive species, with e...

Analysis of 36 records of the rarely encountered moray Gymnothorax polyuranodon indicate that juveniles and adults inhabit fresh and mildly brackish habitats (salinity < 5) in streams of the Australian Wet Tropics Eighty-one per cent of these records were from freshwater streams and collectively demonstrate that this species inhabits fresh water throughout all seasons. A survey of fish researchers, each with at least 100 h of field experience in Australia's Wet Tropics, revealed that 33% of researchers working in fresh waters (nine of 27 researchers) had encountered the species and 15% of researchers with substantial experience working in estuaries (two of 13 researchers) had encountered the species. The species was not sampled or observed in the nearshore marine environment. The only record of an elver of this species was, however, found in an estuary at a salinity of 33·4. This preliminary evidence suggests adult G. polyuranodon occupy freshwater habitats, but further research is required to understand the complete life cycle, including movements, habitat use and reproductive ecology of the species.

Background: Given the globally poor protection of fresh waters for their intrinsic ecological values, assessments are needed to determine how well fresh waters and supported fish species are incidentally protected within existing terrestrial protected-area networks, and to identify their vulnerability to human-induced disturbances. To date, gaps in data have severely constrained any attempt to explore the representation of fresh waters in tropical regions. Methodology and Results: We determined the distribution of fresh waters and fish diversity in the Wet Tropics of Queensland, Australia. We then used distribution data of fresh waters, fish species, human-induced disturbances, and the terrestrial protected-area network to assess the effectiveness of terrestrial protected areas for fresh waters and fish species. We also identified human-induced disturbances likely to influence the effectiveness of freshwater protection and evaluated the vulnerability of fresh waters to these disturbances within and outside protected areas. The representation of fresh waters and fish species in the protected areas of the Wet Tropics is poor: 83% of stream types defined by order, 75% of wetland types, and 89% of fish species have less than 20% of their total Wet Tropics length, area or distribution completely within IUCN category II protected areas. Numerous disturbances affect fresh waters both within and outside of protected areas despite the high level of protection afforded to terrestrial areas in the Wet Tropics (>60% of the region). High-order streams and associated wetlands are influenced by the greatest number of human-induced disturbances and are also the least protected. Thirty-two percent of stream length upstream of protected areas has at least one human-induced disturbance present. Conclusions/Significance: We demonstrate the need for greater consideration of explicit protection and off-reserve management for fresh waters and supported biodiversity by showing that, even in a region where terrestrial protection is high, it does not adequately capture fresh waters.

Globally, the family Syngnathidae (seahorses and pipefish) is recognized as being both under threat from anthropogenic pressures and poorly studied. Of the 47 species that are listed on the IUCN Red List, 33 are currently listed as ‘data deficient’, with inadequate information available to make an assessment of their risk of extinction. Within Australia, this has prompted environmental assessments of specific fisheries, as well as a number of recent ecological studies of marine syngnathids. However, no work has been published on the continent’s four freshwater species. To begin to remedy this, a thorough analysis of the feeding habits of one such species was conducted. Twenty-two specimens of Hippichthys heptagonus Bleeker, 1849 were collected from the Mulgrave River in north Queensland. Dissection and subsequent analysis revealed that microcrustaceans comprised the vast majority of the species diet, with calanoid and cyclopoid copepods being by far the most prevalent prey items (66%). Dipteran, as well as ephemeropteran, larvae were moderately abundant (5% and 10%), and made a notable contribution to the volume of the average diet (16% and 12%). A percent principal component analysis of the volume data reinforced these findings. The first factor accounted for 69.7% of the observed variation, with largest factor loading (0.88) belonging to copepods. there were no significant differences in prey consumption Between genders, but, the percent volume of copepod prey significantly higher in adults was than in juveniles (Mann-Whitney’s U: P < 0.01). These findings indicate that H. heptagonus is primarily a predaceous planktivore, with a specialized diet that is comparable to coastal marine syngnathids. Also, the prevalence of a single prey type suggests that the H. heptagonus occupies a narrow ecological niche, and that its distribution within the watershed may be limited by prey availability.

It has been suggested that differences in body size between consumer and resource species may have important implications for interaction strengths, population dynamics, and eventually food web structure, function, and evolution. Still, the general distribution of consumer–resource body-size ratios in real ecosystems, and whether they vary systematically among habitats or broad taxonomic groups, is poorly understood. Using a unique global database on consumer and resource body sizes, we show that the mean body-size ratios of aquatic herbivorous and detritivorous consumers are several orders of magnitude larger than those of carnivorous predators. Carnivorous predator–prey body-size ratios vary across different habitats and predator and prey types (invertebrates, ectotherm, and endotherm vertebrates). Predator–prey body-size ratios are on average significantly higher (1) in freshwater habitats than in marine or terrestrial habitats, (2) for vertebrate than for invertebrate predators, and (3) for invertebrate than for ectotherm vertebrate prey. If recent studies that relate body-size ratios to interaction strengths are general, our results suggest that mean consumer–resource interaction strengths may vary systematically across different habitat categories and consumer types.

Freshwater environments and their fishes are particularly vulnerable to climate change because the persistence and quality of aquatic habitat depend heavily on climatic and hydrologic regimes. In Australia, projections indicate that the rate and magnitude of climate change will vary across the continent. We review the likely effects of these changes on Australian freshwater fishes across geographic regions encompassing a diversity of habitats and climatic variability. Commonalities in the predicted implications of climate change on fish included habitat loss and fragmentation, surpassing of physiological tolerances and spread of alien species. Existing anthropogenic stressors in more developed regions are likely to compound these impacts because of the already reduced resilience of fish assemblages. Many Australian freshwater fish species are adapted to variable or unpredictable flow conditions and, in some cases, this evolutionary history may confer resistance or resilience to the impacts of climate change. However, the rate and magnitude of projected change will outpace the adaptive capacities of many species. Climate change therefore seriously threatens the persistence of many of Australia’s freshwater fish species, especially of those with limited ranges or specific habitat requirements, or of those that are already occurring close to physiological tolerance limits. Human responses to climate change should be proactive and focus on maintaining population resilience through the protection of habitat, mitigation of current anthropogenic stressors, adequate planning and provisioning of environmental flows and the consideration of more interventionist options such as managed translocations.

In Australia’s Wet Tropics rivers, perennial base flows punctuated by wet season floods drive instream responses across a range of spatial and temporal scales. We combined gut-content and stable-isotope analyses to produce preliminary webs depicting trophic links between fish, their main prey items and basal productivity sources. We then used these webs to test the applicability of general food web principles developed in other tropical systems. Although a range of sources appeared to underpin fish productivity, a large portion of total energy transfer occurred through a subset of trophic links. Variability in food web structure was negatively correlated with spatial scale, being seasonally stable at river reaches and variable at smaller scales. Wet Tropics rivers are similar to those in other tropical areas, but exhibit some unique characteristics. Their high degree of channel incision improves longitudinal connectivity, thereby allowing fish to move between mesohabitats and target their preferred prey items, rather than shifting their diet as resources fluctuate. However, this also inhibits lateral connectivity and limits terrestrial energy inputs from beyond the littoral zone.

Wet-season flooding causes dietary shifts in tropical freshwater fish by regulating instream productivity, habitat structure and food availability. These dynamics have been comprehensively documented worldwide, but data are limited for Australia’s Wet Tropics rivers. The aim of the present study was to extend our earlier fish–habitat model for these systems by examining the role of trophic dynamics in determining fish assemblage composition. Chlorophyll a and phaeophytin concentrations, benthic and littoral invertebrates and fish were collected at four sites in the lower Mulgrave River under a range of flow conditions. Wet-season flooding caused significant reductions in instream productivity, whereas habitat disturbance reduced densities and abundances of littoral and benthic invertebrates. However, volumetric gut contents of 1360 fish, from 36 species, revealed seasonal shifts in guild membership by only two species, with fish moving between sites to target their preferred prey items – largely irrespective of differences in habitat structure. As a result, the food consumed by the fish community present at each site closely reflected the seasonal availability of food resources. The present paper questions whether fish community composition in small tropical rivers can be accurately predicted from habitat surrogates alone and encourages consideration of constraints imposed by the trophic dynamics and reproductive ecology of fish.

Strong relationships between seasonal flooding, instream habitat structure and fish assemblages have been well documented in large tropical rivers (e.g. the flood pulse concept). However, the mechanics of these relationships are likely to differ substantially in smaller coastal rivers, such as those in Costa Rica, south-east Brazil and Australia’s Wet Tropics. These systems typically feature steep upland streams with short, deeply incised lowland channels and poorly connected floodplains. This hypothesis was investigated by documenting spatial and temporal variation in fish-habitat relationships in the Mulgrave River, north-east Queensland. Sampling was conducted at four lowland sites under a range of flow conditions, from dry-season baseflows to a one-in-ten-year flood. Longitudinal environmental gradients and fine-scale habitat patches were important in regulating fish assemblage structure during the dry season. However, high wet-season flows, constrained by the deep channel, acted as disturbances rather than gentle flood-pulses. In particular, the mobilisation of bed sediments led to scouring of aquatic vegetation and a dramatic reduction in habitat heterogeneity. Seasonal movements of fish led to significant changes in assemblage structure – from a community dominated by Neosilurus ater, Hypseleotris compressa, Awaous acritosus and Redigobius bikolanus during the dry season, to one dominated by Nematalosa erebi, Ambassis agrammus and Glossamia aprion during the wet season. Based on these observations, together with information from the literature, a conceptual model of fish-habitat dynamics is presented that is better suited to small tropical rivers than those developed in larger systems with expansive floodplains.

Trophic information—who eats whom—and species' body sizes are two of the most basic descriptions necessary to understand community structure as well as ecological and evolutionary dynamics. Consumer–resource body size ratios between predators and their prey, and parasitoids and their hosts, have recently gained increasing attention due to their important implications for species' interaction strengths and dynamical population stability. This data set documents body sizes of consumers and their resources. We gathered body size data for the food webs of Skipwith Pond, a parasitoid community of grass-feeding chalcid wasps in British grasslands; the pelagic community of the Benguela system, a source web based on broom in the United Kingdom; Broadstone Stream, UK; the Grand Caricaie marsh at Lake Neuchtel, Switzerland; Tuesday Lake, USA; alpine lakes in the Sierra Nevada of California; Mill Stream, UK; and the eastern Weddell Sea Shelf, Antarctica. Further consumer–resource body size data are included for planktonic predators, predatory nematodes, parasitoids, marine fish predators, freshwater invertebrates, Australian terrestrial consumers, and aphid parasitoids. Containing 16 807 records, this is the largest data set ever compiled for body sizes of consumers and their resources. In addition to body sizes, the data set includes information on consumer and resource taxonomy, the geographic location of the study, the habitat studied, the type of the feeding interaction (e.g., predacious, parasitic) and the metabolic categories of the species (e.g., invertebrate, ectotherm vertebrate). The present data set was gathered with the intent to stimulate research on effects of consumer–resource body size patterns on food-web structure, interaction-strength distributions, population dynamics, and community stability. The use of a common data set may facilitate cross-study comparisons and understanding of the relationships between different scientific approaches and models.