22,141 results on '"Thompson, Paul"'
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2. Back Cover
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Thompson, Paul and Plummer, Ken
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- 2021
3. Index
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Thompson, Paul and Plummer, Ken
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- 2021
4. Chapter 8 Conclusion: what can we learn?
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Thompson, Paul and Plummer, Ken
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- 2021
5. Chapter 9 Epilogue
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Thompson, Paul and Plummer, Ken
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- 2021
6. Chapter 7 Social divisions: class, gender, ethnicity - and more
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Thompson, Paul and Plummer, Ken
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- 2021
7. Biographical summaries
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Thompson, Paul and Plummer, Ken
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- 2021
8. Further reading
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Thompson, Paul and Plummer, Ken
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9. Notes
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Thompson, Paul and Plummer, Ken
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10. Chapter 5 Fighting or mixing: quantitative and qualitative research
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Thompson, Paul and Plummer, Ken
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11. Voices 7 Reflections for the future
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Thompson, Paul and Plummer, Ken
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12. Voices 5 Into the field
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Thompson, Paul and Plummer, Ken
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13. Chapter 6 Fieldwork: making methods
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Thompson, Paul and Plummer, Ken
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14. Voices 6 On the margins
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Thompson, Paul and Plummer, Ken
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15. Voices 4 Old and new trends
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Thompson, Paul and Plummer, Ken
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- 2021
16. Chapter 4 Organising: creating research worlds
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Thompson, Paul and Plummer, Ken
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- 2021
17. Voices 3 Old boundaries, new thoughts
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Thompson, Paul and Plummer, Ken
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- 2021
18. Chapter 3 Contexts: Empire, politics and culture
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Thompson, Paul and Plummer, Ken
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- 2021
19. Voices 1 Moments of discovery
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Thompson, Paul and Plummer, Ken
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- 2021
20. Voices 2 Beginnings
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Thompson, Paul and Plummer, Ken
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- 2021
21. Chapter 2 Life stories: biography and creativity
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Thompson, Paul and Plummer, Ken
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- 2021
22. Chapter 1 Introduction: the pioneers of social research study
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Thompson, Paul and Plummer, Ken
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- 2021
23. Finding and using the pioneers' interviews
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Thompson, Paul and Plummer, Ken
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- 2021
24. Acknowledgments
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Thompson, Paul and Plummer, Ken
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- 2021
25. List of abbreviations
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Thompson, Paul and Plummer, Ken
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- 2021
26. Title page, Copyright information
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Thompson, Paul and Plummer, Ken
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- 2021
27. Front Cover
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Thompson, Paul and Plummer, Ken
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- 2021
28. Table of contents
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Thompson, Paul and Plummer, Ken
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- 2021
29. The Classical-to-Quantum Crossover in strain-induced ferroelectric transition in SrTiO$_3$ membranes
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Li, Jiarui, Lee, Yonghun, Choi, Yongseong, Kim, Jong-Woo, Thompson, Paul, Crust, Kevin J., Xu, Ruijuan, Hwang, Harold Y., Ryan, Philip J., and Lee, Wei-Sheng
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Condensed Matter - Materials Science ,Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Strongly Correlated Electrons - Abstract
Mechanical strain presents an effective control over symmetry-breaking phase transitions. In quantum paralelectric SrTiO3, strain can induce the ferroelectric transition via modification of local Ti potential landscape. However, brittle bulk materials can only withstand limited strain range (~0.1%). Taking advantage of nanoscopically-thin freestanding membranes, we demonstrated in-situ strain-induced reversible ferroelectric transition in a single freestanding SrTiO3 membranes. We measure the ferroelectric order by detecting the local anisotropy of the Ti 3d orbital using X-ray linear dichroism at the Ti-K pre-edge, while the strain is determined by X-ray diffraction. With reduced thickness, the SrTiO3 membranes remain elastic with >1% tensile strain cycles. A robust displacive ferroelectricity appears beyond a temperature-dependent critical strain. Interestingly, we discover a crossover from a classical ferroelectric transition to a quantum regime at low temperatures, which enhances strain-induced ferroelectricity. Our results offer a new opportunities to strain engineer functional properties in low dimensional quantum materials and provide new insights into the role of the ferroelectric fluctuations in quantum paraelectric SrTiO3., Comment: 19 pages, 4 figures
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- 2025
30. Effect of disorder on the strain-tuned charge density wave multicriticality in Pd$_x$ErTe$_3$
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Singh, Anisha G., Krogstad, Matthew, Bachmann, Maja D., Thompson, Paul, Rosenkranz, Stephan, Osborn, Ray, Fang, Alan, Kapitulnik, Aharon, Kim, Jong Woo, Ryan, Philip J., Kivelson, Steven A., and Fisher, Ian R.
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science - Abstract
We explore, through a combination of x-ray diffraction and elastoresistivity measurements, the effect of disorder on the strain-tuned charge density wave and associated multicriticality in Pd$_x$ErTe$_3$ (x = 0, 0.01, 0.02 and 0.026). We focus particularly on the behavior near the strain-tuned bicritical point that occurs in pristine ErTe$_3$ (x=0). Our study reveals that while Pd intercalation somewhat broadens the signatures of the CDW phase transitions, the line of first-order transitions at which the CDW reorients as a function of applied strain persists in the presence of disorder and still seemingly terminates at a critical point. The critical point occurs at a lower temperature and a lower strain compared to pristine ErTe$_3$. Similarly, the nematic elastoresistance of Pd$_x$ErTe$_3$, though suppressed in magnitude and broadened relative to that of ErTe$_3$, has a markedly more symmetric response around the critical point. These observations point to disorder driving a reduction in the system's electronic orthorhombicity even while the material remains irrevocably orthorhombic due to the presence of a glide plane in the crystal structure. Disorder, it would appear, reinforces the emergence of a "pseudo-tetragonal" electronic response in this fundamentally orthorhombic material.
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- 2024
31. "A walker's approach [...] is a phenomenological one": W.G. Sebald and the Instant.
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Thompson, Paul
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- 2020
32. Microstructural mapping of neural pathways in Alzheimers disease using macrostructure-informed normative tractometry.
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Feng, Yixue, Chandio, Bramsh, Villalon-Reina, Julio, Thomopoulos, Sophia, Nir, Talia, Benavidez, Sebastian, Laltoo, Emily, Chattopadhyay, Tamoghna, Joshi, Himanshu, Venkatasubramanian, Ganesan, John, John, Jahanshad, Neda, Reid, Robert, Jack, Clifford, Weiner, Michael, and Thompson, Paul
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Alzheimers disease ,anomaly detection ,deep generative models ,diffusion magnetic resonance imaging ,normative modeling ,tractometry ,transfer learning ,Humans ,Alzheimer Disease ,Diffusion Tensor Imaging ,White Matter ,Aged ,Cognitive Dysfunction ,Male ,Female ,Neural Pathways ,Brain ,India ,Brain Mapping ,Diffusion Magnetic Resonance Imaging ,North America ,Cohort Studies - Abstract
INTRODUCTION: Diffusion-weighted magnetic resonance imaging (dMRI) is sensitive to the microstructural properties of brain tissues and shows great promise in detecting the effects of degenerative diseases. However, many approaches analyze single measures averaged over regions of interest without considering the underlying fiber geometry. METHODS: We propose a novel macrostructure-informed normative tractometry (MINT) framework to investigate how white matter (WM) microstructure and macrostructure are jointly altered in mild cognitive impairment (MCI) and dementia. We compared MINT-derived metrics with univariate diffusion tensor imaging (DTI) metrics to examine how fiber geometry may impact the interpretation of microstructure. RESULTS: In two multisite cohorts from North America and India, we find consistent patterns of microstructural and macrostructural anomalies implicated in MCI and dementia; we also rank diffusion metrics sensitivity to dementia. DISCUSSION: We show that MINT, by jointly modeling tract shape and microstructure, has the potential to disentangle and better interpret the effects of degenerative disease on the brains neural pathways. HIGHLIGHTS: Changes in diffusion tensor imaging metrics may be due to macroscopic changes. Normative models encode normal variability of diffusion metrics in healthy controls. Variational autoencoder applied on tractography can learn patterns of fiber geometry. WM microstructure and macrostructure are modeled with multivariate methods. Transfer learning uses pretraining and fine-tuning for increased efficiency.
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- 2025
33. Robust, fully-automated assessment of cerebral perivascular spaces and white matter lesions: a multicentre MRI longitudinal study of their evolution and association with risk of dementia and accelerated brain atrophy
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Barisano, Giuseppe, Iv, Michael, Choupan, Jeiran, Hayden-Gephart, Melanie, Weiner, Michael, Aisen, Paul, Petersen, Ronald, Jack, Clifford R, Jagust, William, Trojanowki, John Q, Toga, Arthur W, Beckett, Laurel, Green, Robert C, Saykin, Andrew J, Morris, John, Shaw, Leslie M, Liu, Enchi, Montine, Tom, Thomas, Ronald G, Donohue, Michael, Walter, Sarah, Gessert, Devon, Sather, Tamie, Jiminez, Gus, Harvey, Danielle, Bernstein, Matthew, Fox, Nick, Thompson, Paul, Schuff, Norbert, DeCarli, Charles, Borowski, Bret, Gunter, Jeff, Senjem, Matt, Vemuri, Prashanthi, Jones, David, Kantarci, Kejal, Ward, Chad, Koeppe, Robert A, Foster, Norm, Reiman, Eric M, Chen, Kewei, Mathis, Chet, Landau, Susan, Cairns, Nigel J, Householder, Erin, Reinwald, Lisa Taylor, Lee, Virginia, Korecka, Magdalena, Figurski, Michal, Crawford, Karen, Neu, Scott, Foroud, Tatiana M, Potkin, Steven, Shen, Li, Kelley, Faber, Kim, Sungeun, Nho, Kwangsik, Kachaturian, Zaven, Frank, Richard, Snyder, Peter J, Molchan, Susan, Kaye, Jeffrey, Quinn, Joseph, Lind, Betty, Carter, Raina, Dolen, Sara, Schneider, Lon S, Pawluczyk, Sonia, Beccera, Mauricio, Teodoro, Liberty, Spann, Bryan M, Brewer, James, Vanderswag, Helen, Fleisher, Adam, Heidebrink, Judith L, Lord, Joanne L, Mason, Sara S, Albers, Colleen S, Knopman, David, Johnson, Kris, Doody, Rachelle S, Meyer, Javier Villanueva, Chowdhury, Munir, Rountree, Susan, Dang, Mimi, Stern, Yaakov, Honig, Lawrence S, Bell, Karen L, Ances, Beau, Morris, John C, Carroll, Maria, Leon, Sue, Mintun, Mark A, Schneider, Stacy, Oliver, Angela, Marson, Daniel, and Griffith, Randall
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Health Services and Systems ,Health Sciences ,Biomedical Imaging ,Neurosciences ,Bioengineering ,Clinical Trials and Supportive Activities ,Cerebrovascular ,Neurodegenerative ,Vascular Cognitive Impairment/Dementia ,Alzheimer's Disease ,Acquired Cognitive Impairment ,Alzheimer's Disease Related Dementias (ADRD) ,Clinical Research ,Aging ,Brain Disorders ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Dementia ,Prevention ,4.1 Discovery and preclinical testing of markers and technologies ,4.2 Evaluation of markers and technologies ,Neurological ,Humans ,Female ,Magnetic Resonance Imaging ,Male ,Atrophy ,Aged ,Longitudinal Studies ,White Matter ,Brain ,Glymphatic System ,Aged ,80 and over ,Middle Aged ,Reproducibility of Results ,Algorithms ,Alzheimer’s Disease Neuroimaging Initiative ,Alzheimer’s disease ,Glymphatic system ,Perivascular spaces ,Small vessel disease ,White matter lesions ,Clinical Sciences ,Public Health and Health Services ,Clinical sciences ,Epidemiology - Abstract
BackgroundPerivascular spaces (PVS) on brain MRI are surrogates for small parenchymal blood vessels and their perivascular compartment, and may relate to brain health. However, it is unknown whether PVS can predict dementia risk and brain atrophy trajectories in participants without dementia, as longitudinal studies on PVS are scarce and current methods for PVS assessment lack robustness and inter-scanner reproducibility.MethodsWe developed a robust algorithm to automatically assess PVS count and size on clinical MRI, and investigated 1) their relationship with dementia risk and brain atrophy in participants without dementia, 2) their longitudinal evolution, and 3) their potential use as a screening tool in simulated clinical trials. We analysed 46,478 clinical measurements of cognitive functioning and 20,845 brain MRI scans from 10,004 participants (71.1 ± 9.7 years-old, 56.6% women) from three publicly available observational studies on ageing and dementia (the Alzheimer's Disease Neuroimaging Initiative, the National Alzheimer's Coordinating Centre database, and the Open Access Series of Imaging Studies). Clinical and MRI data collected between 2004 and 2022 were analysed with consistent methods, controlling for confounding factors, and combined using mixed-effects models.FindingsOur fully-automated method for PVS assessment showed excellent inter-scanner reproducibility (intraclass correlation coefficients >0.8). Fewer PVS and larger PVS diameter at baseline predicted higher dementia risk and accelerated brain atrophy. Longitudinal trajectories of PVS markers differed significantly in participants without dementia who converted to dementia compared with non-converters. In simulated placebo-controlled trials for treatments targeting cognitive decline, screening out participants at low risk of dementia based on our PVS markers enhanced the power of the trial independently of Alzheimer's disease biomarkers.InterpretationThese robust cerebrovascular markers predict dementia risk and brain atrophy and may improve risk-stratification of patients, potentially reducing cost and increasing throughput of clinical trials to combat dementia.FundingUS National Institutes of Health.
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- 2025
34. Enhancing cognitive performance prediction by white matter hyperintensity connectivity assessment
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Petersen, Marvin, Coenen, Mirthe, DeCarli, Charles, De Luca, Alberto, van der Lelij, Ewoud, Weiner, Michael, Aisen, Paul, Petersen, Ronald, Jack, Clifford R, Jagust, William, Landau, Susan, Rivera-Mindt, Monica, Okonkwo, Ozioma, Shaw, Leslie M, Lee, Edward B, Toga, Arthur W, Beckett, Laurel, Harvey, Danielle, Green, Robert C, Saykin, Andrew J, Nho, Kwangsik, Perrin, Richard J, Tosun, Duygu, Sachdev, Pallavi, Drake, Erin, Montine, Tom, Conti, Cat, Weiner, Michael W, Nosheny, Rachel, Sacrey, Diana Truran, Fockler, Juliet, Miller, Melanie J, Conti, Catherine, Kwang, Winnie, Jin, Chengshi, Diaz, Adam, Ashford, Miriam, Flenniken, Derek, Rafii, Michael, Raman, Rema, Jimenez, Gustavo, Donohue, Michael, Salazar, Jennifer, Fidell, Andrea, Boatwright, Virginia, Robison, Justin, Zimmerman, Caileigh, Cabrera, Yuliana, Walter, Sarah, Clanton, Taylor, Shaffer, Elizabeth, Webb, Caitlin, Hergesheimer, Lindsey, Smith, Stephanie, Ogwang, Sheila, Adegoke, Olusegun, Mahboubi, Payam, Pizzola, Jeremy, Jenkins, Cecily, Saito, Naomi, Hussen, Kedir Adem, Amaza, Hannatu, Thao, Mai Seng, Parkins, Shaniya, Ayo, Omobolanle, Glittenberg, Matt, Hoang, Isabella, Germano, Kaori Kubo, Strong, Joe, Weisensel, Trinity, Magana, Fabiola, Thomas, Lisa, Guzman, Vanessa, Ajayi, Adeyinka, Benedetto, Joseph Di, Talavera, Sandra, Felmlee, Joel, Fox, Nick C, Thompson, Paul, Forghanian-Arani, Arvin, Borowski, Bret, Reyes, Calvin, Hedberg, Caitie, Ward, Chad, Schwarz, Christopher, and Reyes, Denise
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Biological Psychology ,Psychology ,Clinical Research ,Acquired Cognitive Impairment ,Alzheimer's Disease Related Dementias (ADRD) ,Vascular Cognitive Impairment/Dementia ,Behavioral and Social Science ,Cerebrovascular ,Basic Behavioral and Social Science ,Neurodegenerative ,Brain Disorders ,Neurosciences ,Aging ,Dementia ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Male ,Female ,White Matter ,Aged ,Middle Aged ,Cross-Sectional Studies ,Magnetic Resonance Imaging ,Cognitive Dysfunction ,Cognition ,Neuropsychological Tests ,Connectome ,Brain ,Alzheimer’s Disease Neuroimaging Initiative ,cerebral small vessel disease ,dementia ,lesion network mapping ,magnetic resonance imaging ,vascular cognitive impairment ,white matter hyperintensities ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
White matter hyperintensities of presumed vascular origin (WMH) are associated with cognitive impairment and are a key imaging marker in evaluating brain health. However, WMH volume alone does not fully account for the extent of cognitive deficits and the mechanisms linking WMH to these deficits remain unclear. Lesion network mapping (LNM) enables us to infer if brain networks are connected to lesions and could be a promising technique for enhancing our understanding of the role of WMH in cognitive disorders. Our study employed LNM to test the following hypotheses: (i) LNM-informed markers surpass WMH volumes in predicting cognitive performance; and (ii) WMH contributing to cognitive impairment map to specific brain networks. We analysed cross-sectional data of 3485 patients from 10 memory clinic cohorts within the Meta VCI Map Consortium, using harmonized test results in four cognitive domains and WMH segmentations. WMH segmentations were registered to a standard space and mapped onto existing normative structural and functional brain connectome data. We employed LNM to quantify WMH connectivity to 480 atlas-based grey and white matter regions of interest (ROI), resulting in ROI-level structural and functional LNM scores. We compared the capacity of total and regional WMH volumes and LNM scores in predicting cognitive function using ridge regression models in a nested cross-validation. LNM scores predicted performance in three cognitive domains (attention/executive function, information processing speed, and verbal memory) significantly better than WMH volumes. LNM scores did not improve prediction for language functions. ROI-level analysis revealed that higher LNM scores, representing greater connectivity to WMH, in grey and white matter regions of the dorsal and ventral attention networks were associated with lower cognitive performance. Measures of WMH-related brain network connectivity significantly improve the prediction of current cognitive performance in memory clinic patients compared to WMH volume as a traditional imaging marker of cerebrovascular disease. This highlights the crucial role of network integrity, particularly in attention-related brain regions, improving our understanding of vascular contributions to cognitive impairment. Moving forward, refining WMH information with connectivity data could contribute to patient-tailored therapeutic interventions and facilitate the identification of subgroups at risk of cognitive disorders.
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- 2024
35. MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI
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Newlin, Nancy R., Schilling, Kurt, Koudoro, Serge, Chandio, Bramsh Qamar, Kanakaraj, Praitayini, Moyer, Daniel, Kelly, Claire E., Genc, Sila, Chen, Jian, Yang, Joseph Yuan-Mou, Wu, Ye, He, Yifei, Zhang, Jiawei, Zeng, Qingrun, Zhang, Fan, Adluru, Nagesh, Nath, Vishwesh, Pathak, Sudhir, Schneider, Walter, Gade, Anurag, Rathi, Yogesh, Hendriks, Tom, Vilanova, Anna, Chamberland, Maxime, Pieciak, Tomasz, Ciupek, Dominika, Vega, Antonio Tristán, Aja-Fernández, Santiago, Malawski, Maciej, Ouedraogo, Gani, Machnio, Julia, Ewert, Christian, Thompson, Paul M., Jahanshad, Neda, Garyfallidis, Eleftherios, and Landman, Bennett A.
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Physics - Medical Physics ,Computer Science - Machine Learning - Abstract
White matter alterations are increasingly implicated in neurological diseases and their progression. International-scale studies use diffusion-weighted magnetic resonance imaging (DW-MRI) to qualitatively identify changes in white matter microstructure and connectivity. Yet, quantitative analysis of DW-MRI data is hindered by inconsistencies stemming from varying acquisition protocols. There is a pressing need to harmonize the preprocessing of DW-MRI datasets to ensure the derivation of robust quantitative diffusion metrics across acquisitions. In the MICCAI-CDMRI 2023 QuantConn challenge, participants were provided raw data from the same individuals collected on the same scanner but with two different acquisitions and tasked with preprocessing the DW-MRI to minimize acquisition differences while retaining biological variation. Submissions are evaluated on the reproducibility and comparability of cross-acquisition bundle-wise microstructure measures, bundle shape features, and connectomics. The key innovations of the QuantConn challenge are that (1) we assess bundles and tractography in the context of harmonization for the first time, (2) we assess connectomics in the context of harmonization for the first time, and (3) we have 10x additional subjects over prior harmonization challenge, MUSHAC and 100x over SuperMUDI. We find that bundle surface area, fractional anisotropy, connectome assortativity, betweenness centrality, edge count, modularity, nodal strength, and participation coefficient measures are most biased by acquisition and that machine learning voxel-wise correction, RISH mapping, and NeSH methods effectively reduce these biases. In addition, microstructure measures AD, MD, RD, bundle length, connectome density, efficiency, and path length are least biased by these acquisition differences., Comment: Accepted for publication at the Journal of Machine Learning for Biomedical Imaging (MELBA) https://melba-journal.org/2024/019
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- 2024
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36. McDermott as a Colleague
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Thompson, Paul B.
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- 2020
37. Bridging big data in the ENIGMA consortium to combine non-equivalent cognitive measures
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Kennedy, Eamonn, Vadlamani, Shashank, Lindsey, Hannah M, Lei, Pui-Wa, Jo-Pugh, Mary, Thompson, Paul M, Tate, David F, Hillary, Frank G, Dennis, Emily L, and Wilde, Elisabeth A
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Psychology ,Applied and Developmental Psychology ,Data Science ,Mental Health ,Behavioral and Social Science ,Neurosciences ,Networking and Information Technology R&D (NITRD) ,Basic Behavioral and Social Science ,Aging ,Mental health ,Humans ,Big Data ,Cognition ,Male ,Female ,Middle Aged ,Adult ,Aged ,Reproducibility of Results ,Verbal Learning ,Neuropsychological Tests ,Memory ,Young Adult ,ENIGMA Clinical Endpoints Working Group ,Harmonization ,Item response theory ,Mega analysis ,Traumatic brain injury ,Verbal learning - Abstract
Investigators in neuroscience have turned to Big Data to address replication and reliability issues by increasing sample size. These efforts unveil new questions about how to integrate data across distinct sources and instruments. The goal of this study was to link scores across common auditory verbal learning tasks (AVLTs). This international secondary analysis aggregated multisite raw data for AVLTs across 53 studies totaling 10,505 individuals. Using the ComBat-GAM algorithm, we isolated and removed the component of memory scores associated with site effects while preserving instrumental effects. After adjustment, a continuous item response theory model used multiple memory items of varying difficulty to estimate each individual's latent verbal learning ability on a single scale. Equivalent raw scores across AVLTs were then found by linking individuals through the ability scale. Harmonization reduced total cross-site score variance by 37% while preserving meaningful memory effects. Age had the largest impact on scores overall (- 11.4%), while race/ethnicity variable was not significant (p > 0.05). The resulting tools were validated on dually administered tests. The conversion tool is available online so researchers and clinicians can convert memory scores across instruments. This work demonstrates that global harmonization initiatives can address reproducibility challenges across the behavioral sciences.
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- 2024
38. Overview of ADNI MRI
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Jack, Clifford R, Arani, Arvin, Borowski, Bret J, Cash, Dave M, Crawford, Karen, Das, Sandhitsu R, DeCarli, Charles, Fletcher, Evan, Fox, Nick C, Gunter, Jeffrey L, Ittyerah, Ranjit, Harvey, Danielle J, Jahanshad, Neda, Maillard, Pauline, Malone, Ian B, Nir, Talia M, Reid, Robert I, Reyes, Denise A, Schwarz, Christopher G, Senjem, Matthew L, Thomas, David L, Thompson, Paul M, Tosun, Duygu, Yushkevich, Paul A, Ward, Chadwick P, Weiner, Michael W, and Initiative, Alzheimer's Disease Neuroimaging
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Biomedical Imaging ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Bioengineering ,Acquired Cognitive Impairment ,Dementia ,Aging ,Alzheimer's Disease ,Brain Disorders ,Clinical Research ,Neurodegenerative ,Humans ,Alzheimer Disease ,Magnetic Resonance Imaging ,Neuroimaging ,Brain ,ADNI ,Alzheimer's disease imaging ,Alzheimer's disease MRI ,magnetic resonance imaging ,Alzheimer's Disease Neuroimaging Initiative ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
The magnetic resonance imaging (MRI) Core has been operating since Alzheimer's Disease Neuroimaging Initiative's (ADNI) inception, providing 20 years of data including reliable, multi-platform standardized protocols, carefully curated image data, and quantitative measures provided by expert investigators. The overarching purposes of the MRI Core include: (1) optimizing and standardizing MRI acquisition methods, which have been adopted by many multicenter studies and trials worldwide and (2) providing curated images and numeric summary values from relevant MRI sequences/contrasts to the scientific community. Over time, ADNI MRI has become increasingly complex. To remain technically current, the ADNI MRI protocol has changed substantially over the past two decades. The ADNI 4 protocol contains nine different imaging types (e.g., three dimensional [3D] T1-weighted and fluid-attenuated inversion recovery [FLAIR]). Our view is that the ADNI MRI data are a greatly underutilized resource. The purpose of this paper is to educate the scientific community on ADNI MRI methods and content to promote greater awareness, accessibility, and use. HIGHLIGHTS: The MRI Core provides multi-platform standardized protocols, carefully curated image data, and quantitative analysis by expert groups. The ADNI MRI protocol has undergone major changes over the past two decades to remain technically current. As of April 25, 2024, the following numbers of image series are available: 17,141 3D T1w; 6877 FLAIR; 3140 T2/PD; 6623 GRE; 3237 dMRI; 2846 ASL; 2968 TF-fMRI; and 2861 HighResHippo (see Table 1 for abbreviations). As of April 25, 2024, the following numbers of quantitative analyses are available: FreeSurfer 10,997; BSI 6120; tensor based morphometry (TBM) and TBM-SYN 12,019; WMH 9944; dMRI 1913; ASL 925; TF-fMRI NFQ 2992; and medial temporal subregion volumes 2726 (see Table 4 for abbreviations). ADNI MRI is an underutilized resource that could be more useful to the research community.
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- 2024
39. Dynamic proportional loss of functional connectivity revealed change of left superior frontal gyrus in subjective cognitive decline: an explanatory study based on Chinese and Western cohorts
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Wang, Luyao, Hu, Wenjing, Dong, Fan, Sheng, Can, Wu, Jinglong, Han, Ying, Jiang, Jiehui, Weiner, Michael W., Aisen, Paul, Petersen, Ronald, Jack, Clifford R., Jagust, William, Trojanowski, John Q., Toga, Arthur W., Beckett, Laurel, Green, Robert C., Saykin, Andrew J., Morris, John, Shaw, Leslie M., Khachaturian, Zaven, Sorensen, Greg, Kuller, Lew, Raichle, Marcus, Paul, Steven, Davies, Peter, Fillit, Howard, Hefti, Franz, Holtzman, David, Mesulam, Marek M., Potter, William, Snyder, Peter, Schwartz, Adam, Montine, Tom, Thomas, Ronald G., Donohue, Michael, Walter, Sarah, Gessert, Devon, Sather, Tamie, Jiminez, Gus, Harvey, Danielle, Bernstein, Matthew, Thompson, Paul, Schuff, Norbert, Borowski, Bret, Gunter, Jeff, Senjem, Matt, Vemuri, Prashanthi, Jones, David, Kantarci, Kejal, Ward, Chad, Koeppe, Robert A., Foster, Norm, Reiman, Eric M., Chen, Kewei, Mathis, Chet, Landau, Susan, Cairns, Nigel J., Householder, Erin, Taylor-Reinwald, Lisa, Lee, Virginia, Korecka, Magdalena, Figurski, Michal, Crawford, Karen, Neu, Scott, Foroud, Tatiana M., Potkin, Steven G., Shen, Li, Faber, Kelley, Kim, Sungeun, Nho, Kwangsik, Thal, Leon, Buckholtz, Neil, Albert, Marylyn, Frank, Richard, Hsiao, John, Kaye, Jeffrey, Quinn, Joseph, Lind, Betty, Carter, Raina, Dolen, Sara, Schneider, Lon S., Pawluczyk, Sonia, Beccera, Mauricio, Teodoro, Liberty, Spann, Bryan M., Brewer, James, Vanderswag, Helen, Fleisher, Adam, Heidebrink, Judith L., Lord, Joanne L., Mason, Sara S., Albers, Colleen S., Knopman, David, Johnson, Kris, Doody, Rachelle S., Villanueva-Meyer, Javier, Chowdhury, Munir, Rountree, Susan, Dang, Mimi, Stern, Yaakov, Honig, Lawrence S., Bell, Karen L., Ances, Beau, Carroll, Maria, Leon, Sue, Mintun, Mark A., Schneider, Stacy, Oliver, Angela, Marson, Daniel, Griffith, Randall, Clark, David, Geldmacher, David, Brockington, John, Roberson, Erik, Grossman, Hillel, Mitsis, Effie, de Toledo-Morrell, Leyla, Shah, Raj C., Duara, Ranjan, Varon, Daniel, Greig, Maria T., Roberts, Peggy, Onyike, Chiadi, D’Agostino, Daniel, Kielb, Stephanie, Galvin, James E., Cerbone, Brittany, Michel, Christina A., Rusinek, Henry, de Leon, Mony J., Glodzik, Lidia, De Santi, Susan, Doraiswamy, PMurali, Petrella, Jeffrey R., Wong, Terence Z., Arnold, Steven E., Karlawish, Jason H., Wolk, David, Smith, Charles D., Jicha, Greg, Hardy, Peter, Sinha, Partha, Oates, Elizabeth, Conrad, Gary, Lopez, Oscar L., Oakley, MaryAnn, Simpson, Donna M., Porsteinsson, Anton P., Goldstein, Bonnie S., Martin, Kim, Makino, Kelly M., Ismail, MSaleem, Brand, Connie, Mulnard, Ruth A., Thai, Gaby, McAdams-Ortiz, Catherine, Womack, Kyle, Mathews, Dana, Quiceno, Mary, Diaz-Arrastia, Ramon, King, Richard, Weiner, Myron, Martin-Cook, Kristen, DeVous, Michael, Levey, Allan I., Lah, James J., Cellar, Janet S., Burns, Jeffrey M., Anderson, Heather S., Swerdlow, Russell H., Apostolova, Liana, Tingus, Kathleen, Woo, Ellen, Silverman, Daniel H. S., Lu, Po H., Bartzokis, George, Graff-Radford, Neill R., Parfitt, Francine, Kendall, Tracy, Johnson, Heather, Farlow, Martin R., Hake, Ann Marie, Matthews, Brandy R., Herring, Scott, Hunt, Cynthia, van Dyck, Christopher H., Carson, Richard E., MacAvoy, Martha G., Chertkow, Howard, Bergman, Howard, Hosein, Chris, Hsiung, Ging-Yuek Robin, Feldman, Howard, Mudge, Benita, Assaly, Michele, Bernick, Charles, Munic, Donna, Kertesz, Andrew, Rogers, John, Trost, Dick, Kerwin, Diana, Lipowski, Kristine, Wu, Chuang-Kuo, Johnson, Nancy, Sadowsky, Carl, Martinez, Walter, Villena, Teresa, Turner, Raymond Scott, Johnson, Kathleen, Reynolds, Brigid, Sperling, Reisa A., Johnson, Keith A., Marshall, Gad, Frey, Meghan, Lane, Barton, Rosen, Allyson, Tinklenberg, Jared, Sabbagh, Marwan N., Belden, Christine M., Jacobson, Sandra A., Sirrel, Sherye A., Kowall, Neil, Killiany, Ronald, Budson, Andrew E., Norbash, Alexander, Johnson, Patricia Lynn, Allard, Joanne, Lerner, Alan, Ogrocki, Paula, Hudson, Leon, Fletcher, Evan, Carmichae, Owen, Olichney, John, DeCarli, Charles, Kittur, Smita, Borrie, Michael, Lee, T.-Y., Bartha, Rob, Johnson, Sterling, Asthana, Sanjay, Carlsson, Cynthia M., Preda, Adrian, Nguyen, Dana, Tariot, Pierre, Reeder, Stephanie, Bates, Vernice, Capote, Horacio, Rainka, Michelle, Scharre, Douglas W., Kataki, Maria, Adeli, Anahita, Zimmerman, Earl A., Celmins, Dzintra, Brown, Alice D., Pearlson, Godfrey D., Blank, Karen, Anderson, Karen, Santulli, Robert B., Kitzmiller, Tamar J., Schwartz, Eben S., Sink, Kaycee M., Williamson, Jeff D., Garg, Pradeep, Watkins, Franklin, Ott, Brian R., Querfurth, Henry, Tremont, Geoffrey, Salloway, Stephen, Malloy, Paul, Correia, Stephen, Rosen, Howard J., Miller, Bruce L., Mintzer, Jacobo, Spicer, Kenneth, Bachman, David, Pasternak, Stephen, Rachinsky, Irina, Drost, Dick, Pomara, Nunzio, Hernando, Raymundo, Sarrael, Antero, Schultz, Susan K., Ponto, Laura L. Boles, Shim, Hyungsub, Smith, Karen Elizabeth, Relkin, Norman, Chaing, Gloria, Raudin, Lisa, Smith, Amanda, Fargher, Kristin, Raj, Balebail Ashok, Neylan, Thomas, Grafman, Jordan, Davis, Melissa, Morrison, Rosemary, Hayes, Jacqueline, Finley, Shannon, Friedl, Karl, Fleischman, Debra, Arfanakis, Konstantinos, James, Olga, Massoglia, Dino, Fruehling, JJay, Harding, Sandra, Peskind, Elaine R., Petrie, Eric C., Li, Gail, Yesavage, Jerome A., Taylor, Joy L., and Furst, Ansgar J.
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- 2025
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40. Targeting mitophagy in neurodegenerative diseases
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Antico, Odetta, Thompson, Paul W., Hertz, Nicholas T., Muqit, Miratul M. K., and Parton, Laura E.
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- 2025
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41. Implementation Determinants and Outcomes of a Technology-Enabled Service Targeting Suicide Risk in High Schools: Mixed Methods Study
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Adrian, Molly, Coifman, Jessica, Pullmann, Michael D, Blossom, Jennifer B, Chandler, Casey, Coppersmith, Glen, Thompson, Paul, and Lyon, Aaron R
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Psychology ,BF1-990 - Abstract
BackgroundTechnology-enabled services (TESs), which integrate human service and digital components, are popular strategies to increase the reach and impact of mental health interventions, but large-scale implementation of TESs has lagged behind their potential. ObjectiveThis study applied a mixed qualitative and quantitative approach to gather input from multiple key user groups (students and educators) and to understand the factors that support successful implementation (implementation determinants) and implementation outcomes of a TES for universal screening, ongoing monitoring, and support for suicide risk management in the school setting. MethodsA total of 111 students in the 9th to 12th grade completed measures regarding implementation outcomes (acceptability, feasibility, and appropriateness) via an open-ended survey. A total of 9 school personnel (school-based mental health clinicians, nurses, and administrators) completed laboratory-based usability testing of a dashboard tracking the suicide risk of students, quantitative measures, and qualitative interviews to understand key implementation outcomes and determinants. School personnel were presented with a series of scenarios and common tasks focused on the basic features and functions of the dashboard. Directed content analysis based on the Consolidated Framework for Implementation Research was used to extract multilevel determinants (ie, the barriers or facilitators at the levels of the outer setting, inner setting, individuals, intervention, and implementation process) related to positive implementation outcomes of the TES. ResultsOverarching themes related to implementation determinants and outcomes suggest that both student and school personnel users view TESs for suicide prevention as moderately feasible and acceptable based on the Acceptability of Intervention Measure and Feasibility of Intervention Measure and as needing improvements in usability based on the System Usability Scale. Qualitative results suggest that students and school personnel view passive data collection based on social media data as a relative advantage to the current system; however, the findings indicate that the TES and the school setting need to address issues of privacy, integration into existing workflows and communication patterns, and options for individualization for student-centered care. ConclusionsInnovative suicide prevention strategies that rely on passive data collection in the school context are a promising and appealing idea. Usability testing identified key issues for revision to facilitate widespread implementation.
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- 2020
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42. Distributed Harmonization: Federated Clustered Batch Effect Adjustment and Generalization
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Hoang, Bao, Pang, Yijiang, Liang, Siqi, Zhan, Liang, Thompson, Paul, and Zhou, Jiayu
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Computer Science - Machine Learning - Abstract
Independent and identically distributed (i.i.d.) data is essential to many data analysis and modeling techniques. In the medical domain, collecting data from multiple sites or institutions is a common strategy that guarantees sufficient clinical diversity, determined by the decentralized nature of medical data. However, data from various sites are easily biased by the local environment or facilities, thereby violating the i.i.d. rule. A common strategy is to harmonize the site bias while retaining important biological information. The ComBat is among the most popular harmonization approaches and has recently been extended to handle distributed sites. However, when faced with situations involving newly joined sites in training or evaluating data from unknown/unseen sites, ComBat lacks compatibility and requires retraining with data from all the sites. The retraining leads to significant computational and logistic overhead that is usually prohibitive. In this work, we develop a novel Cluster ComBat harmonization algorithm, which leverages cluster patterns of the data in different sites and greatly advances the usability of ComBat harmonization. We use extensive simulation and real medical imaging data from ADNI to demonstrate the superiority of the proposed approach. Our codes are provided in https://github.com/illidanlab/distributed-cluster-harmonization., Comment: 11 pages, 7 figures, accepted to KDD2024-ADS
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- 2024
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43. Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation
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Tang, Haoteng, Liu, Guodong, Dai, Siyuan, Ye, Kai, Zhao, Kun, Wang, Wenlu, Yang, Carl, He, Lifang, Leow, Alex, Thompson, Paul, Huang, Heng, and Zhan, Liang
- Subjects
Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
The MRI-derived brain network serves as a pivotal instrument in elucidating both the structural and functional aspects of the brain, encompassing the ramifications of diseases and developmental processes. However, prevailing methodologies, often focusing on synchronous BOLD signals from functional MRI (fMRI), may not capture directional influences among brain regions and rarely tackle temporal functional dynamics. In this study, we first construct the brain-effective network via the dynamic causal model. Subsequently, we introduce an interpretable graph learning framework termed Spatio-Temporal Embedding ODE (STE-ODE). This framework incorporates specifically designed directed node embedding layers, aiming at capturing the dynamic interplay between structural and effective networks via an ordinary differential equation (ODE) model, which characterizes spatial-temporal brain dynamics. Our framework is validated on several clinical phenotype prediction tasks using two independent publicly available datasets (HCP and OASIS). The experimental results clearly demonstrate the advantages of our model compared to several state-of-the-art methods.
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- 2024
44. ConspEmoLLM: Conspiracy Theory Detection Using an Emotion-Based Large Language Model
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Liu, Zhiwei, Liu, Boyang, Thompson, Paul, Yang, Kailai, and Ananiadou, Sophia
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Computer Science - Computation and Language - Abstract
The internet has brought both benefits and harms to society. A prime example of the latter is misinformation, including conspiracy theories, which flood the web. Recent advances in natural language processing, particularly the emergence of large language models (LLMs), have improved the prospects of accurate misinformation detection. However, most LLM-based approaches to conspiracy theory detection focus only on binary classification and fail to account for the important relationship between misinformation and affective features (i.e., sentiment and emotions). Driven by a comprehensive analysis of conspiracy text that reveals its distinctive affective features, we propose ConspEmoLLM, the first open-source LLM that integrates affective information and is able to perform diverse tasks relating to conspiracy theories. These tasks include not only conspiracy theory detection, but also classification of theory type and detection of related discussion (e.g., opinions towards theories). ConspEmoLLM is fine-tuned based on an emotion-oriented LLM using our novel ConDID dataset, which includes five tasks to support LLM instruction tuning and evaluation. We demonstrate that when applied to these tasks, ConspEmoLLM largely outperforms several open-source general domain LLMs and ChatGPT, as well as an LLM that has been fine-tuned using ConDID, but which does not use affective features. This project will be released on https://github.com/lzw108/ConspEmoLLM/., Comment: Work in progress
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- 2024
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45. Brain‐age prediction: Systematic evaluation of site effects, and sample age range and size
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Yu, Yuetong, Cui, Hao‐Qi, Haas, Shalaila S, New, Faye, Sanford, Nicole, Yu, Kevin, Zhan, Denghuang, Yang, Guoyuan, Gao, Jia‐Hong, Wei, Dongtao, Qiu, Jiang, Banaj, Nerisa, Boomsma, Dorret I, Breier, Alan, Brodaty, Henry, Buckner, Randy L, Buitelaar, Jan K, Cannon, Dara M, Caseras, Xavier, Clark, Vincent P, Conrod, Patricia J, Crivello, Fabrice, Crone, Eveline A, Dannlowski, Udo, Davey, Christopher G, de Haan, Lieuwe, de Zubicaray, Greig I, Di Giorgio, Annabella, Fisch, Lukas, Fisher, Simon E, Franke, Barbara, Glahn, David C, Grotegerd, Dominik, Gruber, Oliver, Gur, Raquel E, Gur, Ruben C, Hahn, Tim, Harrison, Ben J, Hatton, Sean, Hickie, Ian B, Pol, Hilleke E Hulshoff, Jamieson, Alec J, Jernigan, Terry L, Jiang, Jiyang, Kalnin, Andrew J, Kang, Sim, Kochan, Nicole A, Kraus, Anna, Lagopoulos, Jim, Lazaro, Luisa, McDonald, Brenna C, McDonald, Colm, McMahon, Katie L, Mwangi, Benson, Piras, Fabrizio, Rodriguez‐Cruces, Raul, Royer, Jessica, Sachdev, Perminder S, Satterthwaite, Theodore D, Saykin, Andrew J, Schumann, Gunter, Sevaggi, Pierluigi, Smoller, Jordan W, Soares, Jair C, Spalletta, Gianfranco, Tamnes, Christian K, Trollor, Julian N, Ent, Dennis Van't, Vecchio, Daniela, Walter, Henrik, Wang, Yang, Weber, Bernd, Wen, Wei, Wierenga, Lara M, Williams, Steven CR, Wu, Mon‐Ju, Zunta‐Soares, Giovana B, Bernhardt, Boris, Thompson, Paul, Frangou, Sophia, Ge, Ruiyang, and Group, ENIGMA‐Lifespan Working
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Biological Psychology ,Psychology ,Neurosciences ,Clinical Research ,Aging ,Neurological ,Mental health ,Humans ,Adolescent ,Female ,Aged ,Adult ,Child ,Young Adult ,Male ,Brain ,Aged ,80 and over ,Child ,Preschool ,Middle Aged ,Magnetic Resonance Imaging ,Neuroimaging ,Sample Size ,benchmarking ,brain aging ,brainAGE ,ENIGMA‐Lifespan Working Group ,Cognitive Sciences ,Experimental Psychology ,Biological psychology ,Cognitive and computational psychology - Abstract
Structural neuroimaging data have been used to compute an estimate of the biological age of the brain (brain-age) which has been associated with other biologically and behaviorally meaningful measures of brain development and aging. The ongoing research interest in brain-age has highlighted the need for robust and publicly available brain-age models pre-trained on data from large samples of healthy individuals. To address this need we have previously released a developmental brain-age model. Here we expand this work to develop, empirically validate, and disseminate a pre-trained brain-age model to cover most of the human lifespan. To achieve this, we selected the best-performing model after systematically examining the impact of seven site harmonization strategies, age range, and sample size on brain-age prediction in a discovery sample of brain morphometric measures from 35,683 healthy individuals (age range: 5-90 years; 53.59% female). The pre-trained models were tested for cross-dataset generalizability in an independent sample comprising 2101 healthy individuals (age range: 8-80 years; 55.35% female) and for longitudinal consistency in a further sample comprising 377 healthy individuals (age range: 9-25 years; 49.87% female). This empirical examination yielded the following findings: (1) the accuracy of age prediction from morphometry data was higher when no site harmonization was applied; (2) dividing the discovery sample into two age-bins (5-40 and 40-90 years) provided a better balance between model accuracy and explained age variance than other alternatives; (3) model accuracy for brain-age prediction plateaued at a sample size exceeding 1600 participants. These findings have been incorporated into CentileBrain (https://centilebrain.org/#/brainAGE2), an open-science, web-based platform for individualized neuroimaging metrics.
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- 2024
46. Connectome architecture shapes large-scale cortical alterations in schizophrenia: a worldwide ENIGMA study.
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Georgiadis, Foivos, Larivière, Sara, Glahn, David, Hong, L, Kochunov, Peter, Mowry, Bryan, Loughland, Carmel, Pantelis, Christos, Henskens, Frans, Green, Melissa, Cairns, Murray, Michie, Patricia, Rasser, Paul, Catts, Stanley, Tooney, Paul, Scott, Rodney, Schall, Ulrich, Carr, Vaughan, Quidé, Yann, Krug, Axel, Stein, Frederike, Nenadić, Igor, Brosch, Katharina, Kircher, Tilo, Gur, Raquel, Gur, Ruben, Satterthwaite, Theodore, Karuk, Andriana, Pomarol-Clotet, Edith, Radua, Joaquim, Fuentes-Claramonte, Paola, Salvador, Raymond, Spalletta, Gianfranco, Voineskos, Aristotle, Sim, Kang, Crespo-Facorro, Benedicto, Tordesillas Gutiérrez, Diana, Ehrlich, Stefan, Crossley, Nicolas, Grotegerd, Dominik, Repple, Jonathan, Lencer, Rebekka, Dannlowski, Udo, Calhoun, Vince, Rootes-Murdy, Kelly, Demro, Caroline, Ramsay, Ian, Sponheim, Scott, Schmidt, Andre, Borgwardt, Stefan, Tomyshev, Alexander, Lebedeva, Irina, Höschl, Cyril, Spaniel, Filip, Preda, Adrian, Nguyen, Dana, Uhlmann, Anne, Stein, Dan, Howells, Fleur, Temmingh, Henk, Diaz Zuluaga, Ana, López Jaramillo, Carlos, Iasevoli, Felice, Ji, Ellen, Homan, Stephanie, Omlor, Wolfgang, Homan, Philipp, Kaiser, Stefan, Seifritz, Erich, Misic, Bratislav, Valk, Sofie, Thompson, Paul, Van Erp, Theodorus, Turner, Jessica, Bernhardt, Boris, and Kirschner, Matthias
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Humans ,Schizophrenia ,Connectome ,Adult ,Female ,Male ,Magnetic Resonance Imaging ,Cerebral Cortex ,Nerve Net ,Brain ,Middle Aged ,Neural Pathways ,Young Adult - Abstract
Schizophrenia is a prototypical network disorder with widespread brain-morphological alterations, yet it remains unclear whether these distributed alterations robustly reflect the underlying network layout. We tested whether large-scale structural alterations in schizophrenia relate to normative structural and functional connectome architecture, and systematically evaluated robustness and generalizability of these network-level alterations. Leveraging anatomical MRI scans from 2439 adults with schizophrenia and 2867 healthy controls from 26 ENIGMA sites and normative data from the Human Connectome Project (n = 207), we evaluated structural alterations of schizophrenia against two network susceptibility models: (i) hub vulnerability, which examines associations between regional network centrality and magnitude of disease-related alterations; (ii) epicenter mapping, which identifies regions whose typical connectivity profile most closely resembles the disease-related morphological alterations. To assess generalizability and specificity, we contextualized the influence of site, disease stages, and individual clinical factors and compared network associations of schizophrenia with that found in affective disorders. Our findings show schizophrenia-related cortical thinning is spatially associated with functional and structural hubs, suggesting that highly interconnected regions are more vulnerable to morphological alterations. Predominantly temporo-paralimbic and frontal regions emerged as epicenters with connectivity profiles linked to schizophrenias alteration patterns. Findings were robust across sites, disease stages, and related to individual symptoms. Moreover, transdiagnostic comparisons revealed overlapping epicenters in schizophrenia and bipolar, but not major depressive disorder, suggestive of a pathophysiological continuity within the schizophrenia-bipolar-spectrum. In sum, cortical alterations over the course of schizophrenia robustly follow brain network architecture, emphasizing marked hub susceptibility and temporo-frontal epicenters at both the level of the group and the individual. Subtle variations of epicenters across disease stages suggest interacting pathological processes, while associations with patient-specific symptoms support additional inter-individual variability of hub vulnerability and epicenters in schizophrenia. Our work outlines potential pathways to better understand macroscale structural alterations, and inter- individual variability in schizophrenia.
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- 2024
47. Principal component analysis as an efficient method for capturing multivariate brain signatures of complex disorders-ENIGMA study in people with bipolar disorders and obesity.
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McWhinney, Sean, Hlinka, Jaroslav, Bakstein, Eduard, Dietze, Lorielle, Corkum, Emily, Abé, Christoph, Alda, Martin, Alexander, Nina, Benedetti, Francesco, Berk, Michael, Bøen, Erlend, Bonnekoh, Linda, Boye, Birgitte, Brosch, Katharina, Canales-Rodríguez, Erick, Cannon, Dara, Dannlowski, Udo, Demro, Caroline, Diaz-Zuluaga, Ana, Elvsåshagen, Torbjørn, Eyler, Lisa, Fortea, Lydia, Fullerton, Janice, Goltermann, Janik, Gotlib, Ian, Grotegerd, Dominik, Haarman, Bartholomeus, Hahn, Tim, Howells, Fleur, Jamalabadi, Hamidreza, Jansen, Andreas, Kircher, Tilo, Klahn, Anna, Kuplicki, Rayus, Lahud, Elijah, Landén, Mikael, Leehr, Elisabeth, Lopez-Jaramillo, Carlos, Mackey, Scott, Malt, Ulrik, Martyn, Fiona, Mazza, Elena, McDonald, Colm, McPhilemy, Genevieve, Meier, Sandra, Meinert, Susanne, Melloni, Elisa, Mitchell, Philip, Nabulsi, Leila, Nenadić, Igor, Nitsch, Robert, Opel, Nils, Ophoff, Roel, Ortuño, Maria, Overs, Bronwyn, Pineda-Zapata, Julian, Pomarol-Clotet, Edith, Radua, Joaquim, Repple, Jonathan, Roberts, Gloria, Rodriguez-Cano, Elena, Sacchet, Matthew, Salvador, Raymond, Savitz, Jonathan, Scheffler, Freda, Schofield, Peter, Schürmeyer, Navid, Shen, Chen, Sim, Kang, Sponheim, Scott, Stein, Dan, Stein, Frederike, Straube, Benjamin, Suo, Chao, Temmingh, Henk, Teutenberg, Lea, Thomas-Odenthal, Florian, Thomopoulos, Sophia, Urosevic, Snezana, Usemann, Paula, van Haren, Neeltje, Vargas, Cristian, Vieta, Eduard, Vilajosana, Enric, Vreeker, Annabel, Winter, Nils, Yatham, Lakshmi, Thompson, Paul, Andreassen, Ole, Ching, Christopher, and Hajek, Tomas
- Subjects
MRI ,bipolar disorder ,body mass index ,obesity ,principal component analysis ,psychiatry ,Humans ,Bipolar Disorder ,Principal Component Analysis ,Adult ,Female ,Male ,Magnetic Resonance Imaging ,Middle Aged ,Obesity ,Schizophrenia ,Cerebral Cortex ,Cluster Analysis ,Young Adult ,Brain - Abstract
Multivariate techniques better fit the anatomy of complex neuropsychiatric disorders which are characterized not by alterations in a single region, but rather by variations across distributed brain networks. Here, we used principal component analysis (PCA) to identify patterns of covariance across brain regions and relate them to clinical and demographic variables in a large generalizable dataset of individuals with bipolar disorders and controls. We then compared performance of PCA and clustering on identical sample to identify which methodology was better in capturing links between brain and clinical measures. Using data from the ENIGMA-BD working group, we investigated T1-weighted structural MRI data from 2436 participants with BD and healthy controls, and applied PCA to cortical thickness and surface area measures. We then studied the association of principal components with clinical and demographic variables using mixed regression models. We compared the PCA model with our prior clustering analyses of the same data and also tested it in a replication sample of 327 participants with BD or schizophrenia and healthy controls. The first principal component, which indexed a greater cortical thickness across all 68 cortical regions, was negatively associated with BD, BMI, antipsychotic medications, and age and was positively associated with Li treatment. PCA demonstrated superior goodness of fit to clustering when predicting diagnosis and BMI. Moreover, applying the PCA model to the replication sample yielded significant differences in cortical thickness between healthy controls and individuals with BD or schizophrenia. Cortical thickness in the same widespread regional network as determined by PCA was negatively associated with different clinical and demographic variables, including diagnosis, age, BMI, and treatment with antipsychotic medications or lithium. PCA outperformed clustering and provided an easy-to-use and interpret method to study multivariate associations between brain structure and system-level variables. PRACTITIONER POINTS: In this study of 2770 Individuals, we confirmed that cortical thickness in widespread regional networks as determined by principal component analysis (PCA) was negatively associated with relevant clinical and demographic variables, including diagnosis, age, BMI, and treatment with antipsychotic medications or lithium. Significant associations of many different system-level variables with the same brain network suggest a lack of one-to-one mapping of individual clinical and demographic factors to specific patterns of brain changes. PCA outperformed clustering analysis in the same data set when predicting group or BMI, providing a superior method for studying multivariate associations between brain structure and system-level variables.
- Published
- 2024
48. Machines, Watersheds, and Sustainability
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Thompson, Paul B.
- Published
- 2016
49. Influencing sustainability: the role of lobbyist characteristics in shaping the EU’s Corporate Sustainability Reporting Directive
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Pirveli, Erekle, Ortiz-Martínez, Esther, Marín-Hernández, Salvador, and Thompson, Paul
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- 2025
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50. White matter microstructure in obesity and bipolar disorders: an ENIGMA bipolar disorder working group study in 2186 individuals
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Dietze, Lorielle M. F., McWhinney, Sean R., Favre, Pauline, Abé, Christoph, Alexander, Nina, Barkhau, Carlotta, Benedetti, Francesco, Berk, Michael, Bøen, Erlend, Boye, Birgitte, Brosch, Katharina, Canales-Rodríguez, Erick J., Cannon, Dara M., Carruthers, Sean P., Corkum, Emily L. V., Dannlowski, Udo, Díaz-Zuluaga, Ana M., Dohm, Katharina, Elvsåshagen, Torbjørn, Flinkenflügel, Kira, Fortea, Lydia, Furlong, Lisa S., Goldstein, Benjamin I., Grotegerd, Dominik, Gruber, Marius, Haarman, Bartholomeus C. M., Howells, Fleur M., Jahanshad, Neda, Jamalabadi, Hamidreza, Jansen, Andreas, Karantonis, James A., Kennedy, Kody G., Kircher, Tilo T. J., Klahn, Anna Luisa, Kochunov, Peter, Kraus, Anna, Landén, Mikael, López-Jaramillo, Carlos, MacIntosh, Bradley J., Mazza, Elena, McDonald, Colm, McIntosh, Andrew M., Meinert, Hannah, Meinert, Susanne, Melloni, Elisa M. T., Mitchell, Philip B., Nenadić, Igor, Opel, Nils, Phillips, Mary, Piguet, Camille, Polosan, Mircea, Pomarol-Clotet, Edith, Pouchon, Arnaud, Radua, Joaquim, Roberts, Gloria, Ross, Alex J., Rossell, Susan L., Salvador, Raymond, Sim, Kang, Soares, Jair C., Zunta-Soares, Giovana B., Stein, Frederike, Straube, Benjamin, Suo, Chao, Teutenberg, Lea, Thomas-Odenthal, Florian, Thomopoulos, Sophia I., Usemann, Paula, Van Rheenen, Tamsyn E., Versace, Amelia, Vieta, Eduard, Vilajosana, Enric, Mwangi, Benson, Wen, Wei, Whalley, Heather C., Wu, Mon-Ju, Andreassen, Ole A., Ching, Christopher R. K., Thompson, Paul M., Houenou, Josselin, and Hajek, Tomas
- Published
- 2024
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