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1. Protease-anti-protease compartmentalization in SARS-CoV-2 ARDS: Therapeutic implications

2. Integrated Molecular Characterization of Testicular Germ Cell Tumors

3. Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

4. Rapid idiosyncratic mechanisms of clinical resistance to KRAS G12C inhibition

5. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

6. Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

7. Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

8. Integrated Molecular Characterization of Uterine Carcinosarcoma

9. Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

10. Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer

11. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

13. Supplementary Materials and Methods. Immunohistochemical staining and automated analysis methods from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium

14. Supplementary Table S2. Agreement between IHC-based and intrinsic subtype, using dichotomous biomarker IHC status from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium

15. Supplementary Figure 1 from High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma

16. Supplementary Data from Lung Squamous Cell Carcinoma mRNA Expression Subtypes Are Reproducible, Clinically Important, and Correspond to Normal Cell Types

17. Data from Lung Squamous Cell Carcinoma mRNA Expression Subtypes Are Reproducible, Clinically Important, and Correspond to Normal Cell Types

18. Supplementary Table S1. Core level agreement between automated and manual scoring of central tissue microarrays from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium

19. Data from High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma

20. Supplementary Figure Legend from High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma

21. Supplementary Table S3. Agreement between three biomarker IHC-based and intrinsic subtypes: impact of adding tumor grade to distinguish between luminal A and luminal B cases. from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium

22. Supplementary Table 1 from High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma

23. The Molecular Taxonomy of Primary Prostate Cancer

24. Genomic Classification of Cutaneous Melanoma

25. Integrated genomic and molecular characterization of cervical cancer

26. A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

27. Combined burden and functional impact tests for cancer driver discovery using DriverPower

28. Integrative pathway enrichment analysis of multivariate omics data

29. Pathway and network analysis of more than 2500 whole cancer genomes

30. Divergent mutational processes distinguish hypoxic and normoxic tumours

31. Genomic footprints of activated telomere maintenance mechanisms in cancer

32. Racial Differences in PAM50 Subtypes in the Carolina Breast Cancer Study

33. Prevalence and Mechanisms of Mucus Accumulation in COVID-19 Lung Disease

34. Alterations of LKB1 and KRAS and risk of brain metastasis: Comprehensive characterization by mutation analysis, copy number, and gene expression in non-small-cell lung carcinoma

35. Integrated Genomic Characterization of Papillary Thyroid Carcinoma

36. The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

38. Generalized Modules for Membrane Antigens (GMMA), an outer membrane vesicle‐based vaccine platform, for efficient viral antigen delivery

39. SARS-CoV-2 infection produces chronic pulmonary epithelial and immune cell dysfunction with fibrosis in mice

43. Supplement to: Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas.

44. Prevalence and Mechanisms of Mucus Accumulation in COVID-19 Lung Disease

46. A model of persistent post SARS-CoV-2 induced lung disease for target identification and testing of therapeutic strategies

48. Transmissible spongiform encephalopathy in goats: is PrP rapid test sensitivity affected by genotype?

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