122 results on '"Thys C"'
Search Results
2. PB1385 Developing a Stem Cell-Based Model for Glanzmann Thrombasthenia to Explore VWF-GPIb Axis during Megakaryopoeisis
- Author
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Ramaekers, K., primary, Thys, C., additional, Van Geet, C., additional, Peerlinck, K., additional, Eto, K., additional, Labarque, V., additional, and Freson, K., additional
- Published
- 2023
- Full Text
- View/download PDF
3. Platelet Gs hypofunction and abnormal morphology resulting from a heterozygous RGS2 mutation
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NOÉ, L., DI MICHELE, M., GIETS, E., THYS, C., WITTEVRONGEL, C., DE VOS, R., OVERBERGH, L., WAELKENS, E., JAEKEN, J., VAN GEET, C., and FRESON, K.
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- 2010
- Full Text
- View/download PDF
4. A compound heterozygous mutation in glycoprotein VI in a patient with a bleeding disorder
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HERMANS, C., WITTEVRONGEL, C., THYS, C., SMETHURST, P.A., VAN GEET, C., and FRESON, K.
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- 2009
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5. Contribución al estudio de la contractilidad del suelo pélvico
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Caufriez, M., Fernández Domínguez, J.C., Defossez, L., and Wary-Thys, C.
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- 2008
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6. Functional studies and proteomics in platelets and fibroblasts reveal a lysosomal defect with increased cathepsin-dependent apoptosis in ATP1A3 defective alternating hemiplegia of childhood: OC 34.1
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Di Michele, M, Goubau, C, Waelkens, E, Thys, C, Overbergh, L, Buyse, G, Casaer, P, Van Geet, C, and Freson, K
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- 2013
7. Thrombocytopenia with Absent Radii (TAR) syndrome is cause by compound inheritance of low-frequency regulatory SNPs and a rare null mutation in exon-junction complex subunit RBM8A: 18
- Author
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Albers, C A, Paul, D S, Schulze, H, Freson, K, Stephens, J C, Smethurst, P A, Jolley, J D, Cvejic, A, Kostadima, M, Bertone, P, Breuning, M H, Debili, N, Deloukas, P, Favier, R, Fiedler, J, Hobbs, C M, Huang, N, Hurles, M E, Kiddle, G, Krapels, I, Nurden, P, Ruivenkamp, C AL, Sambrook, J G, Smith, K, Stemple, D L, Strauss, G, Thys, C, van Geet, C, Newbury-Ecob, R, Ouwehand, W H, and Ghevaert, C
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- 2012
8. Germline selection shapes human mitochondrial DNA diversity
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Wei, W, Tuna, S, Keogh, MJ, Smith, KR, Aitman, TJ, Beales, PL, Bennett, DL, Gale, DP, Bitner-Glindzicz, MAK, Black, GC, Brennan, P, Elliott, P, Flinter, FA, Floto, RA, Houlden, H, Irving, M, Koziell, A, Maher, ER, Markus, HS, Morrell, NW, Newman, WG, Roberts, I, Sayer, JA, Smith, KGC, Taylor, JC, Watkins, H, Webster, AR, Wilkie, AOM, Williamson, C, Attwood, A, Brown, M, Brod, NC, Crisp-Hihn, A, Davis, J, Deevi, SVV, Dewhurst, EF, Edwards, K, Erwood, M, Fox, J, Frary, AJ, Hu, F, Jolley, J, Kingston, N, Linger, R, Mapeta, R, Martin, J, Meacham, S, Papadia, S, Rayner-Matthews, PJ, Samarghitean, C, Shamardina, O, Simeoni, I, Staines, S, Staples, E, Stark, H, Stephens, J, Titterton, C, Von Ziegenweidt, J, Watt, C, Whitehorn, D, Wood, Y, Yates, K, Yu, P, James, R, Ashford, S, Penkett, CJ, Stirrups, KE, Bariana, T, Lentaigne, C, Sivapalaratnam, S, Westbury, SK, Allsup, DJ, Bakchoul, T, Biss, T, Boyce, S, Collins, J, Collins, PW, Curry, NS, Downes, K, Dutt, T, Erber, WN, Evans, G, Everington, T, Favier, R, Gomez, K, Greene, D, Gresele, P, Hart, D, Kazmi, R, Kelly, AM, Lambert, M, Madan, B, Mangles, S, Mathias, M, Millar, C, Obaji, S, Peerlinck, K, Roughley, C, Schulman, S, Scully, M, Shapiro, SE, Sibson, K, Sims, MC, Tait, RC, Talks, K, Thys, C, Toh, C-H, Van Geet, C, Westwood, J-P, Mumford, AD, Ouwehand, WH, Freson, K, Laffan, MA, Tan, RYY, Harkness, K, Mehta, S, Muir, KW, Hassan, A, Traylor, M, Drazyk, AM, Parry, D, Ahmed, M, Kazkaz, H, Vandersteen, AM, Ormondroyd, E, Thomson, K, Dent, T, Buchan, RJ, Bueser, T, Carr-White, G, Cook, S, Daniels, MJ, Harper, AR, Ware, JS, Dixon, PH, Chambers, J, Cheng, F, Estiu, MC, Hague, WM, Marschall, H-U, Vazquez-Lopez, M, Arno, G, French, CE, Michaelides, M, Moore, AT, Sanchis-Juan, A, Carss, K, Raymond, FL, Chinnery, PF, Griffiths, P, Horvath, R, Hudson, G, Jurkute, N, Pyle, A, Yu-Wai-Man, P, Whitworth, J, Adlard, J, Armstrong, R, Brewer, C, Casey, R, Cole, TRP, Evans, DG, Greenhalgh, L, Hanson, HL, Hoffman, J, Izatt, L, Kumar, A, Lalloo, F, Ong, KR, Park, S-M, Searle, C, Side, L, Snape, K, Woodward, E, Tischkowitz, M, Grozeva, D, Kurian, MA, Themistocleous, AC, Gosal, D, Marshall, A, Matthews, E, McCarthy, MI, Renton, T, Rice, ASC, Vale, T, Walker, SM, Woods, CG, Thaventhiran, JE, Allen, HL, Savic, S, Alachkar, H, Antrobus, R, Baxendale, HE, Browning, MJ, Buckland, MS, Cooper, N, Edgar, JDM, Egner, W, Gilmour, KC, Goddard, S, Gordins, P, Grigoriadou, S, Hackett, S, Hague, R, Hayman, G, Herwadkar, A, Huissoon, AP, Jolles, S, Kelleher, P, Kumararatne, D, Longhurst, H, Lorenzo, LE, Lyons, PA, Maimaris, J, Noorani, S, Richter, A, Sargur, RB, Sewell, WAC, Thomas, D, Thomas, MJ, Worth, A, Yong, PFK, Kuijpers, TW, Thrasher, AJ, Levine, AP, Sadeghi-Alavijeh, O, Wong, EKS, Cook, HT, Chan, MMY, Hall, M, Harris, C, McAlinden, P, Marchbank, KJ, Marks, S, Maxwell, H, Mozere, M, Wessels, J, Johnson, SA, Bleda, M, Hadinnapola, C, Haimel, M, Swietlik, E, Bogaard, H, Church, C, Coghlan, G, Condliffe, R, Corris, P, Danesino, C, Eyries, M, Gall, H, Ghofrani, H-A, Gibbs, JSR, Girerd, B, Holden, S, Houweling, A, Howard, LS, Humbert, M, Kiely, DG, Kovacs, G, Lawrie, A, Ross, RVM, Moledina, S, Montani, D, Newnham, M, Olschewski, A, Olschewski, H, Peacock, A, Pepke-Zaba, J, Scelsi, L, Seeger, W, Soubrier, F, Suntharalingam, J, Toshner, M, Treacy, C, Trembath, R, Noordegraaf, AV, Waisfisz, Q, Wharton, J, Wilkins, MR, Wort, SJ, Graf, S, Louka, E, Roy, NB, Rao, A, Ancliff, P, Babbs, C, Layton, DM, Mead, AJ, O'Sullivan, J, Okoli, S, Saleem, M, Bierzynska, A, Diz, CB, Colby, E, Ekani, MN, Satchell, S, Fowler, T, Rendon, A, Scott, R, Smedley, D, Thomas, E, Caulfield, M, Abbs, S, Burrows, N, Chitre, M, Gattens, M, Gurnell, M, Kelsall, W, Poole, KES, Ross-Russell, R, Spasic-Boskovic, O, Twiss, P, Wagner, A, Banka, S, Clayton-Smith, J, Douzgou, S, Abulhoul, L, Aurora, P, Bockenhauer, D, Cleary, M, Dattani, M, Ganesan, V, Pilkington, C, Rahman, S, Shah, N, Wedderburn, L, Compton, CJ, Deshpande, C, Fassihi, H, Haque, E, Josifova, D, Mohammed, SN, Robert, L, Rose, SJ, Ruddy, DM, Sarkany, RN, Sayer, G, Shaw, AC, Campbell, C, Gibson, K, Koelling, N, Lester, T, Nemeth, AH, Palles, C, Patel, S, Sen, A, Taylor, J, Tomlinson, IP, Malka, S, Browning, AC, Burn, J, De Soyza, A, Graham, J, Pearce, S, Quinton, R, Schaefer, AM, Wilson, BT, Wright, M, Simpson, M, Syrris, P, Bradley, JR, Turro, E, ARD - Amsterdam Reproduction and Development, AII - Inflammatory diseases, Paediatric Infectious Diseases / Rheumatology / Immunology, Medical Research Council (MRC), Wellcome Trust, Wei, Wei [0000-0002-2945-3543], Tuna, Salih [0000-0003-3606-4367], Smith, Katherine R [0000-0002-0329-5938], Beales, Phil L [0000-0002-9164-9782], Bennett, David L [0000-0002-7996-2696], Gale, Daniel P [0000-0002-9170-1579], Brennan, Paul [0000-0003-1128-6254], Elliott, Perry [0000-0003-3383-3984], Floto, R Andres [0000-0002-2188-5659], Houlden, Henry [0000-0002-2866-7777], Koziell, Ania [0000-0003-4882-0246], Maher, Eamonn R [0000-0002-6226-6918], Markus, Hugh S [0000-0002-9794-5996], Morrell, Nicholas W [0000-0001-5700-9792], Newman, William G [0000-0002-6382-4678], Sayer, John A [0000-0003-1881-3782], Smith, Kenneth GC [0000-0003-3829-4326], Taylor, Jenny C [0000-0003-3602-5704], Watkins, Hugh [0000-0002-5287-9016], Webster, Andrew R [0000-0001-6915-9560], Wilkie, Andrew OM [0000-0002-2972-5481], Penkett, Christopher J [0000-0003-4006-7261], Stirrups, Kathleen E [0000-0002-6823-3252], Rendon, Augusto [0000-0001-8994-0039], Bradley, John R [0000-0002-7774-8805], Turro, Ernest [0000-0002-1820-6563], Chinnery, Patrick F [0000-0002-7065-6617], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Non-Mendelian inheritance ,Genome ,Mitochondrial/genetics ,DNA, Mitochondrial/genetics ,0302 clinical medicine ,Ovum/growth & development ,MTDNA ,TRANSCRIPTION ,Genetics ,education.field_of_study ,Multidisciplinary ,NIHR BioResource–Rare Diseases ,ASSOCIATION ,Heteroplasmy ,Mitochondrial ,Multidisciplinary Sciences ,GENOME ,REPLACEMENT ,Science & Technology - Other Topics ,Female ,Maternal Inheritance ,Mitochondrial DNA ,General Science & Technology ,Genetic genealogy ,Population ,Biology ,Human mitochondrial genetics ,SEQUENCE ,DNA, Mitochondrial ,03 medical and health sciences ,Genetic ,100,000 Genomes Project–Rare Diseases Pilot ,Genetic variation ,MD Multidisciplinary ,Humans ,Selection, Genetic ,education ,Selection ,Ovum ,Science & Technology ,MUTATIONS ,Genetic Variation ,DNA ,LEIGH-DISEASE ,030104 developmental biology ,REPLICATION ,Genome, Mitochondrial ,HETEROPLASMY ,030217 neurology & neurosurgery - Abstract
INTRODUCTION Only 2.4% of the 16.5-kb mitochondrial DNA (mtDNA) genome shows homoplasmic variation at >1% frequency in humans. Migration patterns have contributed to geographic differences in the frequency of common genetic variants, but population genetic evidence indicates that selection shapes the evolving mtDNA phylogeny. The mechanism and timing of this process are not clear. Unlike the nuclear genome, mtDNA is maternally transmitted and there are many copies in each cell. Initially, a new genetic variant affects only a proportion of the mtDNA (heteroplasmy). During female germ cell development, a reduction in the amount of mtDNA per cell causes a “genetic bottleneck,” which leads to rapid segregation of mtDNA molecules and different levels of heteroplasmy between siblings. Although heteroplasmy is primarily governed by random genetic drift, there is evidence of selection occurring during this process in animals. Yet it has been difficult to demonstrate this convincingly in humans. RATIONALE To determine whether there is selection for or against heteroplasmic mtDNA variants during transmission, we studied 12,975 whole-genome sequences, including 1526 mother–offspring pairs of which 45.1% had heteroplasmy affecting >1% of mtDNA molecules. Harnessing both the mtDNA and nuclear genome sequences, we then determined whether the nuclear genetic background influenced mtDNA heteroplasmy, validating our findings in another 40,325 individuals. RESULTS Previously unknown mtDNA variants were less likely to be inherited than known variants, in which the level of heteroplasmy tended to increase on transmission. Variants in the ribosomal RNA genes were less likely to be transmitted, whereas variants in the noncoding displacement (D)–loop were more likely to be transmitted. MtDNA variants predicted to affect the protein sequence tended to have lower heteroplasmy levels than synonymous variants. In 12,975 individuals, we identified a correlation between the location of heteroplasmic sites and known D-loop polymorphisms, including the absence of variants in critical sites required for mtDNA transcription and replication. We defined 206 unrelated individuals for which the nuclear and mitochondrial genomes were from different human populations. In these individuals, new population-specific heteroplasmies were more likely to match the nuclear genetic ancestry than the mitochondrial genome on which the mutations occurred. These findings were independently replicated in 654 additional unrelated individuals. CONCLUSION The characteristics of mtDNA in the human population are shaped by selective forces acting on heteroplasmy within the female germ line and are influenced by the nuclear genetic background. The signature of selection can be seen over one generation, ensuring consistency between these two independent genetic systems.
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- 2019
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9. Treatment of osteoarthritis of the carpometacarpal joint of the thumb with trapeziectomy and tendon allograft interposition
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Hollevoet, N, Thys, C, Vekens, L, Hollevoet, N, Thys, C, and Vekens, L
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- 2020
10. New variant of platelet type von Willebrand disease due to increased expression of GPib/V/IX complex
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FRESON, K, THYS, C, VERMYLEN, J, and VAN GEET, C
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- 2002
11. Lessons Learned from the First Clinical Trial to Compare Outcomes of Lungs Transplanted from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs) Assessed by Ex-Vivo Lung Perfusion (EVLP) and CT Scan and Lungs Transplanted from Conventional Donors (CONV)
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Egan, T.M., primary, Blackwell, J., additional, Haithcock, B., additional, Long, J., additional, Birchard, K., additional, Lobo, J., additional, Masuodi, S., additional, Requard, J., additional, and Thys, C., additional
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- 2017
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12. Obstacles to Lung Transplant from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs)
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Egan, T.M., primary, Requard, J.J., additional, Stewart, P., additional, and Thys, C., additional
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- 2016
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13. Interim Results of a Phase II Clinical Trial Comparing Outcomes of Recipients of Lungs Recovered from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs) Assessed by Ex-Vivo Lung Perfusion (EVLP) and CT Scan to Outcomes of Recipients of Lungs from Brain-Dead Donors (BDDs)
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Egan, T.M., primary, Haithcock, B., additional, Long, J., additional, Birchard, K., additional, Lobo, J., additional, Stewart, P., additional, Blackwell, J., additional, Yuan, D., additional, Thys, C., additional, Karb, D., additional, Miller, S., additional, and Hartwig, M., additional
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- 2016
- Full Text
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14. Thrombocytopenia with Absent Radii (TAR) syndrome is cause by compound inheritance of low-frequency regulatory SNPs and a rare null mutation in exon-junction complex subunit RBM8A
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Albers, C. A., Paul, D. S., Schulze, H., Freson, K., Stephens, J. C., Smethurst, P. A., Jolley, J. D., Cvejic, A., Kostadima, M., Paul Bertone, Breuning, M. H., Debili, N., Deloukas, P., Favier, R., Fiedler, J., Hobbs, C. M., Huang, N., Hurles, M. E., Kiddle, G., Krapels, I., Nurden, P., Ruivenkamp, C. A. L., Sambrook, J. G., Smith, K., Stemple, D. L., Strauss, G., Thys, C., Geet, C., Newbury-Ecob, R., Ouwehand, W. H., and Ghevaert, C.
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- 2012
15. Épreuves virulentes successives avec le virus de la fièvre catarrhale ovine sérotype 8 avec ou sans vaccination sur génisses gestantes
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Martinelle, Ludovic, Dal Pozzo, Fabiana, Thys, C., Sarradin, Pierre, De Leeuw, I., De Clercq, K., Thiry, E., Saegerman, C., Université de Liège, Plateforme d'Infectiologie Expérimentale (PFIE), Institut National de la Recherche Agronomique (INRA), Centre d'Etudes Vétérinaires et Agrochimiques, and Partenaires INRAE
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VACCIN INACTIVE ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,ComputingMilieux_MISCELLANEOUS ,VIRUS SEROTYPE 8 - Abstract
National audience
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- 2011
16. Q Fever Serological Survey and Associated Risk Factors in Veterinarians, Southern Belgium, 2013
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Dal Pozzo, F., primary, Martinelle, L., additional, Léonard, P., additional, Renaville, B., additional, Renaville, R., additional, Thys, C., additional, Smeets, F., additional, Czaplicki, G., additional, Van Esbroeck, M., additional, and Saegerman, C., additional
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- 2016
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17. Efficiency of a vaccine against BTV-8 following successive challenges in calves and pregnant heifers
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Martinelle, Ludovic, Dal Pozzo, Fabiana, Thys, C., Sarradin, Pierre, De Leeuw, I., De Clercq, K., Thiry, E., Saegerman, C., Université de Liège, Plateforme d'Infectiologie Expérimentale (PFIE), Institut National de la Recherche Agronomique (INRA), Centre d'Etudes Vétérinaires et Agrochimiques, and Partenaires INRAE
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bovin ,gestation ,fièvre catarrhale ovine ,[SDV]Life Sciences [q-bio] ,FCO ,virus sérotype 8 ,expérimentation ,sérologie ,ComputingMilieux_MISCELLANEOUS ,maladie vectorielle ,vaccin inactive - Abstract
National audience
- Published
- 2010
18. (368) - Lessons Learned from the First Clinical Trial to Compare Outcomes of Lungs Transplanted from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs) Assessed by Ex-Vivo Lung Perfusion (EVLP) and CT Scan and Lungs Transplanted from Conventional Donors (CONV)
- Author
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Egan, T.M., Blackwell, J., Haithcock, B., Long, J., Birchard, K., Lobo, J., Masuodi, S., Requard, J., III, and Thys, C.
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- 2017
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19. Q Fever Serological Survey and Associated Risk Factors in Veterinarians, Southern Belgium, 2013.
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Dal Pozzo, F., Martinelle, L., Léonard, P., Renaville, B., Renaville, R., Thys, C., Smeets, F., Czaplicki, G., Van Esbroeck, M., and Saegerman, C.
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VETERINARIANS ,SEROPREVALENCE ,Q fever ,LIVESTOCK productivity ,PERIODIC health examinations - Abstract
A sero-epidemiological survey was organized among veterinarians working in Southern Belgium to estimate the seroprevalence of Q fever and the risk factors associated with exposure. A total of 108 veterinarians took part to this cross-sectional study, with a majority practicing with livestock animals. The overall seroprevalence was 45.4%, but it increased to 58.3% among veterinarians having contact with livestock. Three main serological profiles were detected (relatively recent, past and potentially chronic infections). The contact with manure during the prior month was the risk factor associated with seropositivity after multivariate logistic regression analysis. Classification and regression tree analysis identified the age as the most predictive variable to exclude potentially chronic infection in apparently healthy seropositive veterinarians. In conclusion, livestock veterinarians practicing in Southern Belgium are highly exposed to Q fever, a neglected zoonosis for which serological and medical examinations should be envisaged in at risk groups. [ABSTRACT FROM AUTHOR]
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- 2017
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20. Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome
- Author
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Albers, C.A., Paul, D.S., Schulze, H., Freson, K., Stephens, J.C., Smethurst, P.A., Jolley, J.D., Cvejic, A., Kostadima, M., Bertone, P., Breuning, M.H., Debili, N., Deloukas, P., Favier, R., Fiedler, J., Hobbs, C.M., Huang, N., Hurles, M.E., Kiddle, G., Krapels, I., Nurden, P., Ruivenkamp, C.A., Sambrook, J.G., Smith, K., Stemple, D.L., Strauss, G., Thys, C., van Geet, C., Newbury-Ecob, R., Ouwehand, W.H., Ghevaert, C., Albers, C.A., Paul, D.S., Schulze, H., Freson, K., Stephens, J.C., Smethurst, P.A., Jolley, J.D., Cvejic, A., Kostadima, M., Bertone, P., Breuning, M.H., Debili, N., Deloukas, P., Favier, R., Fiedler, J., Hobbs, C.M., Huang, N., Hurles, M.E., Kiddle, G., Krapels, I., Nurden, P., Ruivenkamp, C.A., Sambrook, J.G., Smith, K., Stemple, D.L., Strauss, G., Thys, C., van Geet, C., Newbury-Ecob, R., Ouwehand, W.H., and Ghevaert, C.
- Abstract
Item does not contain fulltext, The exon-junction complex (EJC) performs essential RNA processing tasks. Here, we describe the first human disorder, thrombocytopenia with absent radii (TAR), caused by deficiency in one of the four EJC subunits. Compound inheritance of a rare null allele and one of two low-frequency SNPs in the regulatory regions of RBM8A, encoding the Y14 subunit of EJC, causes TAR. We found that this inheritance mechanism explained 53 of 55 cases (P < 5 x 10(-228)) of the rare congenital malformation syndrome. Of the 53 cases with this inheritance pattern, 51 carried a submicroscopic deletion of 1q21.1 that has previously been associated with TAR, and two carried a truncation or frameshift null mutation in RBM8A. We show that the two regulatory SNPs result in diminished RBM8A transcription in vitro and that Y14 expression is reduced in platelets from individuals with TAR. Our data implicate Y14 insufficiency and, presumably, an EJC defect as the cause of TAR syndrome.
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- 2012
21. Regulator of g-protein signaling 18 controls megakaryopoiesis and the cilia-mediated vertebrate mechanosensory system
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Louwette, S., Labarque, V., Wittevrongel, C., Thys, C., Metz, J., Gijsbers, R., Debyser, Z., Arnout, J., Geet, C. Van, Freson, K., Louwette, S., Labarque, V., Wittevrongel, C., Thys, C., Metz, J., Gijsbers, R., Debyser, Z., Arnout, J., Geet, C. Van, and Freson, K.
- Abstract
Item does not contain fulltext
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- 2012
22. Development and application of a SYBR green RT-PCR for first line screening and quantification of porcine sapovirus infection
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Mauroy, A., van der Poel, W.H.M., van der Honing-Hakze, R.W., Thys, C., Thiry, E., Mauroy, A., van der Poel, W.H.M., van der Honing-Hakze, R.W., Thys, C., and Thiry, E.
- Abstract
Background: Sapoviruses are single stranded positive sense RNA viruses belonging to the family Caliciviridae. The virus is detected in different species including the human and the porcine species as an enteric pathogen causing asymptomatic to symptomatic enteritis. In this study, we report the development of a rapid real time qRT-PCR based on SYBR Green chemistry for the diagnosis of porcine sapovirus infection in swine. Results: The method allows the detection of porcine sapoviruses and the quantification of the genomic copies present in stool samples. During its development, the diagnostic tool showed good correlation compared with the gold standard conventional RT-PCR and was ten-fold more sensitive. When the method was applied to field samples, porcine noroviruses from genogroup 2 genotype 11b were also detected. The method was also applied to swine samples from the Netherlands that were positive for PoSaV infection. Phylogenetic results obtained from the samples showed that PoSaV sequences were genetically related to the currently described genogroup III, to the proposed genogroup VII and also to the MI-QW19 sequence (close to the human SaV sequences). Conclusions: A rapid, sensitive, and reliable diagnosis method was developed for porcine sapovirus diagnosis. It correlated with the gold standard conventional RT-PCR. Specificity was good apart for genogroup 2 genotype 11b porcine noroviruses. As a first line screening diagnosis method, it allows a quicker and easier decision on doubtful samples.
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- 2012
23. (1038) - Interim Results of a Phase II Clinical Trial Comparing Outcomes of Recipients of Lungs Recovered from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs) Assessed by Ex-Vivo Lung Perfusion (EVLP) and CT Scan to Outcomes of Recipients of Lungs from Brain-Dead Donors (BDDs)
- Author
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Egan, T.M., Haithcock, B., Long, J., Birchard, K., Lobo, J., Stewart, P., Blackwell, J., Yuan, D., Thys, C., Karb, D., Miller, S., and Hartwig, M.
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- 2016
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24. (158) - Obstacles to Lung Transplant from Uncontrolled Donation After Circulatory Determination of Death Donors (uDCDDs)
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Egan, T.M., Requard, J.J., Stewart, P., and Thys, C.
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- 2016
- Full Text
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25. Student Perceptions of Teaching Quality in Five Countries: A Partial Credit Model Approach to Assess Measurement Invariance
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Rikkert M. van der Lans, Ridwan Maulana, Michelle Helms-Lorenz, Carmen-María Fernández-García, Seyeoung Chun, Thelma de Jager, Yulia Irnidayanti, Mercedes Inda-Caro, Okhwa Lee, Thys Coetzee, Nurul Fadhilah, Meae Jeon, and Peter Moorer
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History of scholarship and learning. The humanities ,AZ20-999 ,Social Sciences - Abstract
This study examines measurement invariance of student perceptions of teaching quality collected in five countries: Indonesia (n students = 6,331), the Netherlands (n students = 6,738), South Africa (n students = 3,422), South Korea (n students = 6,997) and Spain (n students = 4,676). The administered questionnaire was the My Teacher Questionnaire (MTQ). Student perceived teachers’ teaching quality was estimated using the partial credit model (PCM). Tests for differential item functioning (DIF) were used to assess measurement invariance. Furthermore, if DIF was found, it was explored whether an application of a quasi-international calibration, which estimates country-unique parameters for DIF items, can provide more valid estimates for between-country comparisons. Results indicate the absence of non-uniform DIF, but presence of uniform DIF among most items. This suggests that direct comparisons of raw mean or sum scores between countries is not advisable. Details of the set of invariant items are provided. Furthermore, results suggest that the quasi-international calibration is promising, but also that this approach needs further exploration in the context of student perceptions of teaching quality.
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- 2021
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26. Dose-responses to inducers and inhibitors of platelet aggregation analysed via a micro-method
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Hoylaerts, M. F., primary, Thys, C., additional, Stassen, J. M., additional, and Vermylen, J., additional
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- 1996
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27. Student Perceptions in Measuring Teaching Behavior Across Six Countries: A Multi-Group Confirmatory Factor Analysis Approach to Measurement Invariance
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Stéfanie André, Ridwan Maulana, Michelle Helms-Lorenz, Sibel Telli, Seyeoung Chun, Carmen-María Fernández-García, Thelma de Jager, Yulia Irnidayanti, Mercedes Inda-Caro, Okhwa Lee, Rien Safrina, Thys Coetzee, and Meae Jeon
- Subjects
cross-country comparison ,measurement invariance ,secondary education ,student perceptions ,teaching behavior ,Psychology ,BF1-990 - Abstract
The purpose of this study is to examine measurement invariance of scoring of teaching behavior, as perceived by students, across six cultural contexts (Netherlands, Spain, Turkey, South Africa, South Korea, and Indonesia). It also aims to compare perceived teaching behavior across the six countries based on a uniform student measure. Results from multi-group confirmatory factor analyses (MGCFA) showed perceived teaching behavior in the six countries to be adequately invariant. Perceived teaching behavior was the highest in South Korea and the lowest in Indonesia. The findings provide new insights into the relevance and differences of teaching behavior across cultural contexts.
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- 2020
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28. Interactions of Cd with Zn, Cu, Mn and Fe for lettuce (Lactuca sativa) in hydroponic culture.
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Thys, C., Vanthomme, P., Schrevens, E., and de Proft, M.
- Subjects
- *
CADMIUM , *LETTUCE , *TRACE elements , *EFFECT of chemicals on plants , *HYDROPONICS , *PLANT nutrition , *TRACE elements in plant nutrition - Abstract
The effect and accumulation of cadmium (Cd) in lettuce grown by means of the hydroponic technique was investigated by multivariate analysis, and was found to be affected by the concentration of other trace elements. Particularly iron acted in a strongly antagonistic way against Cd. Consequently, no absolute toxicity limits for Cd can be drawn without considering other trace elements. [ABSTRACT FROM AUTHOR]
- Published
- 1991
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29. THE EFFECT OF HYPOTHALAMIC LUTEINIZING HORMONE RELEASING HORMONE (LH-RH) ON PLASMA GONADOTROPHIN LEVELS IN NORMAL SUBJECTS
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Thys C, H. Becker, Alain Demoulin, Paul Franchimont, C. Ernould, J. C. Valcke, Jean-Pierre Bourguignon, and Jean-Jacques Legros
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Adult ,Male ,endocrine system ,medicine.medical_specialty ,Time Factors ,Adolescent ,medicine.drug_class ,Endocrinology, Diabetes and Metabolism ,Population ,Luteal phase ,Ethinyl Estradiol ,Gonadotropin-Releasing Hormone ,Andrology ,Follicle-stimulating hormone ,Sex Factors ,Endocrinology ,Internal medicine ,medicine ,Humans ,Endocrine system ,Child ,education ,education.field_of_study ,Dose-Response Relationship, Drug ,Puberty ,Pituitary Hormone-Releasing Hormones ,Luteinizing Hormone ,Middle Aged ,Menstruation ,Female ,Follicle Stimulating Hormone ,Gonadotropin ,Luteinizing hormone ,hormones, hormone substitutes, and hormone antagonists ,Contraceptives, Oral ,Hormone - Abstract
The release of gonadotropin following the injection of synthetic LH- RH was studied in various physiological and experimental circumstances. In the male 25 mcg of LH-RH led to simultaneous release of FSH and LH prior to and during puberty. In adults on the other hand the same dose led only to an increase in LH while FSH levels remained unchanged. At higher doses there was FSH release and an increase in LH proportional to the amount of LH-RH injected. When FSH was released the increase was clearly less than that of LH and often occurred considerably later. In the female 25 mcg of LH-RH led to a clear-cut considerably later. In the female 25 mcg of prior to puberty. After the onset of puberty the degree of response was inverted; the increase in LH was greater than that of FSH. In normally menstruating women the FSH and LH response was greater during the luteal phase than during the preovulatory phase. Treatment with nonsequential hormonal contraceptives blocked FSH and LH release normally produced by the injection of 50 mcg of LH-RH. There was no effect when a dose of 100 mcg was injected. In postmenopausal women only LH rose following the administration of 25 mcg of LH-RH. After 5 days of treatment with 200 mcg ethinly estradiol the same dose of LH-RH led to simultaneous release of LH and of FSH. It is concluded that the secretory response of the gonadotropins to LH-RH is influenced by the endocrine equilibrium and more particularly by the interaction of the gonadal steroids which can alter the synthesis and/or the release of the pituitary gonadotropins.
- Published
- 1974
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30. Development and application of a SYBR green RT-PCR for first line screening and quantification of porcine sapovirus infection
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Mauroy Axel, Van der Poel Wim H M, der Honing Renate, Thys Christine, and Thiry Etienne
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Sapovirus ,Diagnosis ,Real time PCR ,Porcine ,SYBR green ,Phylogeny ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Sapoviruses are single stranded positive sense RNA viruses belonging to the family Caliciviridae. The virus is detected in different species including the human and the porcine species as an enteric pathogen causing asymptomatic to symptomatic enteritis. In this study, we report the development of a rapid real time qRT-PCR based on SYBR Green chemistry for the diagnosis of porcine sapovirus infection in swine. Results The method allows the detection of porcine sapoviruses and the quantification of the genomic copies present in stool samples. During its development, the diagnostic tool showed good correlation compared with the gold standard conventional RT-PCR and was ten-fold more sensitive. When the method was applied to field samples, porcine noroviruses from genogroup 2 genotype 11b were also detected. The method was also applied to swine samples from the Netherlands that were positive for PoSaV infection. Phylogenetic results obtained from the samples showed that PoSaV sequences were genetically related to the currently described genogroup III, to the proposed genogroup VII and also to the MI-QW19 sequence (close to the human SaV sequences). Conclusions A rapid, sensitive, and reliable diagnosis method was developed for porcine sapovirus diagnosis. It correlated with the gold standard conventional RT-PCR. Specificity was good apart for genogroup 2 genotype 11b porcine noroviruses. As a first line screening diagnosis method, it allows a quicker and easier decision on doubtful samples.
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- 2012
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31. Functional assessment of genetic variants in thrombomodulin detected in patients with bleeding and thrombosis.
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Van Laer C, Lavend'homme R, Baert S, De Wispelaere K, Thys C, Kint C, Noppen S, Peerlinck K, Van Geet C, Schols D, Vanassche T, Labarque V, Verhamme P, Jacquemin MG, and Freson K
- Abstract
Thrombomodulin (TM) expressed on endothelial cells regulates coagulation. Specific nonsense variants in the TM gene, THBD, result in high soluble TM levels causing rare bleeding disorder. In contrast, though THBD variants have been associated with venous thromboembolism, this association remains controversial. A multigene panel was used to diagnose 601 patients with inherited bleeding or thrombotic disorders. This resulted in the identification of 8 THBD variants for six patients with a thrombotic (C175S, A282P, L433P, P501L, G502R, P508L) and two patients with a bleeding (P260A, T478I) phenotype. These were all classified as variants of uncertain significance, and we here aimed to assess their functional role in coagulation. For this purpose, soluble and cell membrane-bound recombinant TM were produced in Expi293FTM cells. L433P TM showed a marked decrease in the inhibition of thrombin generation and complete inhibition of protein C and TAFI activation. Soluble C175S TM showed decreased inhibition of thrombin generation and protein C activation, while no effect was observed for membrane-bound TM. For the other TM variants, no effect on thrombin generation nor protein C or TAFI activation could be observed. Surface plasmon resonance analysis showed absent thrombin-TM binding in the presence of L433P, as this residue is located at their interaction site. In conclusion, our study shows functional effects of L433P TM and potentially also C175S TM that are compatible with an increased thrombosis risk. THBD variants are rare but can be relevant to both bleeding and thrombosis. Functional assays for these variants are critical to understand their role., (Copyright © 2025 American Society of Hematology.)
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- 2025
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32. Mutations in the U4 snRNA gene RNU4-2 cause one of the most prevalent monogenic neurodevelopmental disorders.
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Greene D, Thys C, Berry IR, Jarvis J, Ortibus E, Mumford AD, Freson K, and Turro E
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- Humans, Female, Male, Spliceosomes genetics, Microcephaly genetics, Microcephaly epidemiology, Genetic Association Studies, Child, RNA, Small Nuclear genetics, Neurodevelopmental Disorders genetics, Intellectual Disability genetics, Mutation genetics
- Abstract
Most people with intellectual disability (ID) do not receive a molecular diagnosis following genetic testing. To identify new etiologies of ID, we performed a genetic association analysis comparing the burden of rare variants in 41,132 noncoding genes between 5,529 unrelated cases and 46,401 unrelated controls. RNU4-2, which encodes U4 small nuclear RNA, a critical component of the spliceosome, was the most strongly associated gene. We implicated de novo variants among 47 cases in two regions of RNU4-2 in the etiology of a syndrome characterized by ID, microcephaly, short stature, hypotonia, seizures and motor delay. We replicated this finding in three collections, bringing the number of unrelated cases to 73. Analysis of national genomic diagnostic data showed RNU4-2 to be a more common etiological gene for neurodevelopmental abnormality than any previously reported autosomal gene. Our findings add to the growing evidence of spliceosome dysfunction in the etiologies of neurological disorders., (© 2024. The Author(s).)
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- 2024
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33. Ribosome dysfunction underlies SLFN14-related thrombocytopenia.
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Ver Donck F, Ramaekers K, Thys C, Van Laer C, Peerlinck K, Van Geet C, Eto K, Labarque V, and Freson K
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- Humans, Blood Platelets metabolism, Ribosomes metabolism, Megakaryocytes pathology, Ribosomal Proteins genetics, Ribosomal Proteins metabolism, Mechanistic Target of Rapamycin Complex 1 genetics, Mechanistic Target of Rapamycin Complex 1 metabolism, RNA metabolism, Thrombocytopenia pathology
- Abstract
Pathogenic missense variants in SLFN14, which encode an RNA endoribonuclease protein that regulates ribosomal RNA (rRNA) degradation, are known to cause inherited thrombocytopenia (TP) with impaired platelet aggregation and adenosine triphosphate secretion. Despite mild laboratory defects, the patients displayed an obvious bleeding phenotype. However, the function of SLFN14 in megakaryocyte (MK) and platelet biology remains unknown. This study aimed to model the disease in an immortalized MK cell line (imMKCL) and to characterize the platelet transcriptome in patients with the SLFN14 K219N variant. MK derived from heterozygous and homozygous SLFN14 K219N imMKCL and stem cells of blood from patients mainly presented with a defect in proplatelet formation and mitochondrial organization. SLFN14-defective platelets and mature MK showed signs of rRNA degradation; however, this was absent in undifferentiated imMKCL cells and granulocytes. Total platelet RNA was sequenced in 2 patients and 19 healthy controls. Differential gene expression analysis yielded 2999 and 2888 significantly (|log2 fold change| >1, false discovery rate <0.05) up- and downregulated genes, respectively. Remarkably, these downregulated genes were not enriched in any biological pathway, whereas upregulated genes were enriched in pathways involved in (mitochondrial) translation and transcription, with a significant upregulation of 134 ribosomal protein genes (RPGs). The upregulation of mitochondrial RPGs through increased mammalian target of rapamycin complex 1 (mTORC1) signaling in SLFN14 K219N MK seems to be a compensatory response to rRNA degradation. mTORC1 inhibition with rapamycin resulted in further enhanced rRNA degradation in SLFN14 K219N MK. Taken together, our study indicates dysregulation of mTORC1 coordinated ribosomal biogenesis is the disease mechanism for SLFN14-related TP., (© 2023 by The American Society of Hematology. Licensed under Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0), permitting only noncommercial, nonderivative use with attribution. All other rights reserved.)
- Published
- 2023
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34. Clinical application of multigene panel testing for bleeding, thrombotic, and platelet disorders: a 3-year Belgian experience.
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Van Laer C, Jacquemin M, Baert S, Labarque V, Thys C, Vanassche T, Van Geet C, Verhamme P, Willekens K, Corveleyn A, Peerlinck K, and Freson K
- Subjects
- Humans, Belgium, Retrospective Studies, Hemorrhage diagnosis, Hemorrhage genetics, Genetic Testing, Blood Platelet Disorders diagnosis, Blood Platelet Disorders genetics, Thrombosis genetics
- Abstract
Background: The international study ThromboGenomics has evaluated the diagnostic rate using a targeted multigene panel test for the screening of inherited bleeding, thrombotic and platelet disorders., Objectives: We retrospectively analyzed the results of the implementation of genetic testing for inherited bleeding, thrombotic and platelet disorders in Belgian clinical practice and evaluated possible reclassification of reported variants., Patients/methods: We implemented a Thrombosis-Hemostasis multigene panel test using whole exome sequencing to diagnose 487 patients recruited by 27 different Belgian hospitals with the implementation of stringent laboratory accreditation standards and by studying up to 100 diagnostic-grade genes., Results: This Thrombosis-Hemostasis multigene panel test was able to detect at least one genetic variant in 58% of the 487 patients of which 50% were (likely) pathogenic variants and the others were variants of unknown significance. Polygenic variants were detected in 65 patients (13%). A multi-step workflow for results discussion by multidisciplinary team meetings and patients' recalls for segregation studies and additional laboratory testing was set up. Variants were also submitted to the GoldVariants database from the International Society on Thrombosis and Haemostasis (ISTH). The aim of these approaches is to optimize variant interpretation and to (re)classify variants of unknown significance as (likely) pathogenic or (likely) benign., Conclusions: The growing implementation of multigene panel tests in clinical diagnostics comes with difficulties in interpreting genetic results. Additional efforts are needed to continuously optimize the diagnostic outcome., Competing Interests: Declaration of competing interest All authors declare they have no conflict of interest to disclose., (Copyright © 2022 International Society on Thrombosis and Haemostasis. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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35. Genetic association analysis of 77,539 genomes reveals rare disease etiologies.
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Greene D, Pirri D, Frudd K, Sackey E, Al-Owain M, Giese APJ, Ramzan K, Riaz S, Yamanaka I, Boeckx N, Thys C, Gelb BD, Brennan P, Hartill V, Harvengt J, Kosho T, Mansour S, Masuno M, Ohata T, Stewart H, Taibah K, Turner CLS, Imtiaz F, Riazuddin S, Morisaki T, Ostergaard P, Loeys BL, Morisaki H, Ahmed ZM, Birdsey GM, Freson K, Mumford A, and Turro E
- Subjects
- Humans, Bayes Theorem, Genotype, Phenotype, Membrane Proteins, Rare Diseases genetics, Genome-Wide Association Study methods
- Abstract
The genetic etiologies of more than half of rare diseases remain unknown. Standardized genome sequencing and phenotyping of large patient cohorts provide an opportunity for discovering the unknown etiologies, but this depends on efficient and powerful analytical methods. We built a compact database, the 'Rareservoir', containing the rare variant genotypes and phenotypes of 77,539 participants sequenced by the 100,000 Genomes Project. We then used the Bayesian genetic association method BeviMed to infer associations between genes and each of 269 rare disease classes assigned by clinicians to the participants. We identified 241 known and 19 previously unidentified associations. We validated associations with ERG, PMEPA1 and GPR156 by searching for pedigrees in other cohorts and using bioinformatic and experimental approaches. We provide evidence that (1) loss-of-function variants in the Erythroblast Transformation Specific (ETS)-family transcription factor encoding gene ERG lead to primary lymphoedema, (2) truncating variants in the last exon of transforming growth factor-β regulator PMEPA1 result in Loeys-Dietz syndrome and (3) loss-of-function variants in GPR156 give rise to recessive congenital hearing impairment. The Rareservoir provides a lightweight, flexible and portable system for synthesizing the genetic and phenotypic data required to study rare disease cohorts with tens of thousands of participants., (© 2023. The Author(s).)
- Published
- 2023
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36. Methylome analysis for haemophilia A intron 22 inversion patients with and without inhibitors: A pilot study.
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Izzi B, Thys C, Tirozzi A, Bezulska-Ditkowska M, De Reys M, Labarque V, Van Geet C, Peerlinck K, and Freson K
- Subjects
- Humans, Introns genetics, Pilot Projects, Epigenome, Factor VIII genetics, Chromosome Inversion, Hemophilia A genetics
- Published
- 2022
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37. F11 Gene Duplication Causes Elevated FXI Plasma Levels and Is a Risk for Venous Thrombosis.
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Van Laer C, Peerlinck K, Jacquemin M, Thys C, Downes K, Labarque V, and Freson K
- Subjects
- Factor XI genetics, Gene Duplication, Humans, Factor XI Deficiency genetics, Venous Thrombosis genetics
- Abstract
Competing Interests: None declared.
- Published
- 2022
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38. Results of treatment of trapeziometacarpal osteoarthritis with trapeziectomy and tendon allograft interposition.
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Hollevoet N, Thys C, Vekens L, Benis S, and Vanhove W
- Subjects
- Allografts surgery, Arthroplasty methods, Female, Humans, Male, Middle Aged, Range of Motion, Articular, Tendons transplantation, Thumb surgery, Osteoarthritis surgery, Trapezium Bone surgery
- Abstract
The aim of the study was to evaluate the results of treatment of osteoarthritis of the carpometacarpal joint of the thumb with tendon allograft interposition. Fifty-three patients (61 hands), 13 men and 40 women, were operated on at a mean age of 61 years. A partial trapeziectomy with tendon interposition was performed in 19 hands and with suspension arthroplasty in 24. Seventeen thumbs underwent a total trapeziectomy with suspension arthroplasty. Patients were evaluated at a mean follow-up of 4 years. In 34 patients (41 hands), a mean disability of arm, shoulder and hand score of 19 was found and a mean visual analogue scale for pain of 1.3. The satisfaction rate was 83 %. Revision operations were performed in 8 out of 61 hands. Four of those thumbs had been operated on previously or did not have primary osteoarthritis. No revisions were needed after partial trapeziectomy and tendon allograft interposition with suspension arthroplasty. In conclusion, tendon allograft interposition can be considered as one of the treatment options for osteoarthritis of the carpometacarpal joint of the thumb.
- Published
- 2021
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39. Combined transcriptome and proteome profiling of SRC kinase activity in healthy and E527K defective megakaryocytes.
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De Kock L, Ver Donck F, Thys C, Wijgaerts A, Eto K, Van Geet C, and Freson K
- Subjects
- Gene Expression Profiling, Humans, Phosphorylation, Transcriptome, src-Family Kinases genetics, Megakaryocytes metabolism, Proteome
- Published
- 2021
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40. The brain-derived neurotrophic factor prompts platelet aggregation and secretion.
- Author
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Boukhatem I, Fleury S, Welman M, Le Blanc J, Thys C, Freson K, Best MG, Würdinger T, Allen BG, and Lordkipanidzé M
- Subjects
- Humans, Phosphatidylinositol 3-Kinases, Platelet Activation, Platelet Aggregation, Autism Spectrum Disorder, Brain-Derived Neurotrophic Factor
- Abstract
Brain-derived neurotrophic factor (BDNF) has both autocrine and paracrine roles in neurons, and its release and signaling mechanisms have been extensively studied in the central nervous system. Large quantities of BDNF have been reported in circulation, essentially stored in platelets with concentrations reaching 100- to 1000-fold those of neurons. Despite this abundance, the function of BDNF in platelet biology has not been explored. At low concentrations, BDNF primed platelets, acting synergistically with classical agonists. At high concentrations, BDNF induced complete biphasic platelet aggregation that in part relied on amplification from secondary mediators. Neurotrophin-4, but not nerve growth factor, and an activating antibody against the canonical BDNF receptor tropomyosin-related kinase B (TrkB) induced similar platelet responses to BDNF, suggesting TrkB could be the mediator. Platelets expressed, both at their surface and in their intracellular compartment, a truncated form of TrkB lacking its tyrosine kinase domain. BDNF-induced platelet aggregation was prevented by inhibitors of Ras-related C3 botulinum toxin substrate 1 (Rac1), protein kinase C, and phosphoinositide 3-kinase. BDNF-stimulated platelets secreted a panel of angiogenic and inflammatory cytokines, which may play a role in maintaining vascular homeostasis. Two families with autism spectrum disorder were found to carry rare missense variants in the BDNF gene. Platelet studies revealed defects in platelet aggregation to low concentrations of collagen, as well as reduced adenosine triphosphate secretion in response to adenosine diphosphate. In summary, circulating BDNF levels appear to regulate platelet activation, aggregation, and secretion through activation of a truncated TrkB receptor and downstream kinase-dependent signaling., (© 2021 by The American Society of Hematology.)
- Published
- 2021
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41. Unravelling the disease mechanism for TSPYL1 deficiency.
- Author
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Buyse G, Di Michele M, Wijgaerts A, Louwette S, Wittevrongel C, Thys C, Downes K, Ceulemans B, Van Esch H, Van Geet C, and Freson K
- Subjects
- Animals, Female, Fibroblasts metabolism, Humans, Infant, Infant, Newborn, Male, Pedigree, Phenotype, Sudden Infant Death genetics, Exome Sequencing, Zebrafish, Fibroblasts pathology, Frameshift Mutation, Nuclear Proteins deficiency, Nuclear Proteins genetics, Proteome analysis, Sudden Infant Death pathology
- Abstract
We describe a lethal combined nervous and reproductive systems disease in three affected siblings of a consanguineous family. The phenotype was characterized by visceroautonomic dysfunction (neonatal bradycardia/apnea, feeding problems, hyperactive startle reflex), severe postnatal progressive neurological abnormalities (including abnormal neonatal cry, hypotonia, epilepsy, polyneuropathy, cerebral gray matter atrophy), visual impairment, testicular dysgenesis in males and sudden death at infant age by brainstem-mediated cardiorespiratory arrest. Whole-exome sequencing revealed a novel homozygous frameshift variant p.Val242GlufsTer52 in the TSPY-like 1 gene (TSPYL1). The truncated TSPYL1 protein that lacks the nucleosome assembly protein domain was retained in the Golgi of fibroblasts from the three patients, whereas control fibroblasts express full-length TSPYL1 in the nucleus. Proteomic analysis of nuclear extracts from fibroblasts identified 24 upregulated and 20 downregulated proteins in the patients compared with 5 controls with 'regulation of cell cycle' as the highest scored biological pathway affected. TSPYL1-deficient cells had prolonged S and G2 phases with reduced cellular proliferation rates. Tspyl1 depletion in zebrafish mimicked the patients' phenotype with early lethality, defects in neurogenesis and cardiac dilation. In conclusion, this study reports the third pedigree with recessive TSPYL1 variants, confirming that TSPYL1 deficiency leads to a combined nervous and reproductive systems disease, and provides for the first time insights into the disease mechanism., (© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2020
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42. Whole-genome sequencing of patients with rare diseases in a national health system.
- Author
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Turro E, Astle WJ, Megy K, Gräf S, Greene D, Shamardina O, Allen HL, Sanchis-Juan A, Frontini M, Thys C, Stephens J, Mapeta R, Burren OS, Downes K, Haimel M, Tuna S, Deevi SVV, Aitman TJ, Bennett DL, Calleja P, Carss K, Caulfield MJ, Chinnery PF, Dixon PH, Gale DP, James R, Koziell A, Laffan MA, Levine AP, Maher ER, Markus HS, Morales J, Morrell NW, Mumford AD, Ormondroyd E, Rankin S, Rendon A, Richardson S, Roberts I, Roy NBA, Saleem MA, Smith KGC, Stark H, Tan RYY, Themistocleous AC, Thrasher AJ, Watkins H, Webster AR, Wilkins MR, Williamson C, Whitworth J, Humphray S, Bentley DR, Kingston N, Walker N, Bradley JR, Ashford S, Penkett CJ, Freson K, Stirrups KE, Raymond FL, and Ouwehand WH
- Subjects
- Actin-Related Protein 2-3 Complex genetics, Adaptor Proteins, Signal Transducing genetics, Alleles, Databases, Factual, Erythrocytes metabolism, GATA1 Transcription Factor genetics, Humans, Phenotype, Quantitative Trait Loci, Receptors, Thrombopoietin genetics, State Medicine, United Kingdom, Internationality, National Health Programs, Rare Diseases diagnosis, Rare Diseases genetics, Whole Genome Sequencing
- Abstract
Most patients with rare diseases do not receive a molecular diagnosis and the aetiological variants and causative genes for more than half such disorders remain to be discovered
1 . Here we used whole-genome sequencing (WGS) in a national health system to streamline diagnosis and to discover unknown aetiological variants in the coding and non-coding regions of the genome. We generated WGS data for 13,037 participants, of whom 9,802 had a rare disease, and provided a genetic diagnosis to 1,138 of the 7,065 extensively phenotyped participants. We identified 95 Mendelian associations between genes and rare diseases, of which 11 have been discovered since 2015 and at least 79 are confirmed to be aetiological. By generating WGS data of UK Biobank participants2 , we found that rare alleles can explain the presence of some individuals in the tails of a quantitative trait for red blood cells. Finally, we identified four novel non-coding variants that cause disease through the disruption of transcription of ARPC1B, GATA1, LRBA and MPL. Our study demonstrates a synergy by using WGS for diagnosis and aetiological discovery in routine healthcare.- Published
- 2020
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43. Germline mutations in the transcription factor IKZF5 cause thrombocytopenia.
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Lentaigne C, Greene D, Sivapalaratnam S, Favier R, Seyres D, Thys C, Grassi L, Mangles S, Sibson K, Stubbs M, Burden F, Bordet JC, Armari-Alla C, Erber W, Farrow S, Gleadall N, Gomez K, Megy K, Papadia S, Penkett CJ, Sims MC, Stefanucci L, Stephens JC, Read RJ, Stirrups KE, Ouwehand WH, Laffan MA, Frontini M, Freson K, and Turro E
- Subjects
- Chromatin genetics, Chromatin metabolism, Chromatin ultrastructure, Cytoplasmic Granules genetics, Cytoplasmic Granules metabolism, Cytoplasmic Granules ultrastructure, Female, Gene Expression Regulation, HEK293 Cells, Humans, Male, Blood Platelets metabolism, Blood Platelets ultrastructure, Genetic Diseases, Inborn genetics, Genetic Diseases, Inborn metabolism, Genetic Diseases, Inborn pathology, Germ-Line Mutation, Ikaros Transcription Factor genetics, Ikaros Transcription Factor metabolism, Mutation, Missense, Thrombocytopenia genetics, Thrombocytopenia metabolism, Thrombocytopenia pathology, Thrombopoiesis genetics
- Abstract
To identify novel causes of hereditary thrombocytopenia, we performed a genetic association analysis of whole-genome sequencing data from 13 037 individuals enrolled in the National Institute for Health Research (NIHR) BioResource, including 233 cases with isolated thrombocytopenia. We found an association between rare variants in the transcription factor-encoding gene IKZF5 and thrombocytopenia. We report 5 causal missense variants in or near IKZF5 zinc fingers, of which 2 occurred de novo and 3 co-segregated in 3 pedigrees. A canonical DNA-zinc finger binding model predicts that 3 of the variants alter DNA recognition. Expression studies showed that chromatin binding was disrupted in mutant compared with wild-type IKZF5, and electron microscopy revealed a reduced quantity of α granules in normally sized platelets. Proplatelet formation was reduced in megakaryocytes from 7 cases relative to 6 controls. Comparison of RNA-sequencing data from platelets, monocytes, neutrophils, and CD4+ T cells from 3 cases and 14 healthy controls showed 1194 differentially expressed genes in platelets but only 4 differentially expressed genes in each of the other blood cell types. In conclusion, IKZF5 is a novel transcriptional regulator of megakaryopoiesis and the eighth transcription factor associated with dominant thrombocytopenia in humans., (© 2019 by The American Society of Hematology.)
- Published
- 2019
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44. Diagnostic high-throughput sequencing of 2396 patients with bleeding, thrombotic, and platelet disorders.
- Author
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Downes K, Megy K, Duarte D, Vries M, Gebhart J, Hofer S, Shamardina O, Deevi SVV, Stephens J, Mapeta R, Tuna S, Al Hasso N, Besser MW, Cooper N, Daugherty L, Gleadall N, Greene D, Haimel M, Martin H, Papadia S, Revel-Vilk S, Sivapalaratnam S, Symington E, Thomas W, Thys C, Tolios A, Penkett CJ, Ouwehand WH, Abbs S, Laffan MA, Turro E, Simeoni I, Mumford AD, Henskens YMC, Pabinger I, Gomez K, and Freson K
- Subjects
- Female, Gene Dosage, Hemostasis genetics, Humans, Male, Blood Platelet Disorders diagnosis, Blood Platelet Disorders genetics, Hemorrhage diagnosis, Hemorrhage genetics, High-Throughput Nucleotide Sequencing, Thrombosis diagnosis, Thrombosis genetics
- Abstract
A targeted high-throughput sequencing (HTS) panel test for clinical diagnostics requires careful consideration of the inclusion of appropriate diagnostic-grade genes, the ability to detect multiple types of genomic variation with high levels of analytic sensitivity and reproducibility, and variant interpretation by a multidisciplinary team (MDT) in the context of the clinical phenotype. We have sequenced 2396 index patients using the ThromboGenomics HTS panel test of diagnostic-grade genes known to harbor variants associated with rare bleeding, thrombotic, or platelet disorders (BTPDs). The molecular diagnostic rate was determined by the clinical phenotype, with an overall rate of 49.2% for all thrombotic, coagulation, platelet count, and function disorder patients and a rate of 3.2% for patients with unexplained bleeding disorders characterized by normal hemostasis test results. The MDT classified 745 unique variants, including copy number variants (CNVs) and intronic variants, as pathogenic, likely pathogenic, or variants of uncertain significance. Half of these variants (50.9%) are novel and 41 unique variants were identified in 7 genes recently found to be implicated in BTPDs. Inspection of canonical hemostasis pathways identified 29 patients with evidence of oligogenic inheritance. A molecular diagnosis has been reported for 894 index patients providing evidence that introducing an HTS genetic test is a valuable addition to laboratory diagnostics in patients with a high likelihood of having an inherited BTPD., (© 2019 by The American Society of Hematology.)
- Published
- 2019
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45. Sphingolipid dysregulation due to lack of functional KDSR impairs proplatelet formation causing thrombocytopenia.
- Author
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Bariana TK, Labarque V, Heremans J, Thys C, De Reys M, Greene D, Jenkins B, Grassi L, Seyres D, Burden F, Whitehorn D, Shamardina O, Papadia S, Gomez K, BioResource N, Van Geet C, Koulman A, Ouwehand WH, Ghevaert C, Frontini M, Turro E, and Freson K
- Subjects
- Alcohol Oxidoreductases genetics, Animals, Blood Platelets metabolism, Cell Differentiation, Cells, Cultured, Child, Female, Humans, Induced Pluripotent Stem Cells metabolism, Male, Megakaryocytes metabolism, Metabolomics, Mutation, Pedigree, Prognosis, Thrombocytopenia metabolism, Thrombocytopenia pathology, Zebrafish, Alcohol Oxidoreductases deficiency, Blood Platelets pathology, Induced Pluripotent Stem Cells pathology, Megakaryocytes pathology, Sphingolipids metabolism, Thrombocytopenia etiology
- Abstract
Sphingolipids are fundamental to membrane trafficking, apoptosis, and cell differentiation and proliferation. KDSR or 3-keto-dihydrosphingosine reductase is an essential enzyme for de novo sphingolipid synthesis, and pathogenic mutations in KDSR result in the severe skin disorder erythrokeratodermia variabilis et progressiva-4 Four of the eight reported cases also had thrombocytopenia but the underlying mechanism has remained unexplored. Here we expand upon the phenotypic spectrum of KDSR deficiency with studies in two siblings with novel compound heterozygous variants associated with thrombocytopenia, anemia, and minimal skin involvement. We report a novel phenotype of progressive juvenile myelofibrosis in the propositus, with spontaneous recovery of anemia and thrombocytopenia in the first decade of life. Examination of bone marrow biopsies showed megakaryocyte hyperproliferation and dysplasia. Megakaryocytes obtained by culture of CD34
+ stem cells confirmed hyperproliferation and showed reduced proplatelet formation. The effect of KDSR insufficiency on the sphingolipid profile was unknown, and was explored in vivo and in vitro by a broad metabolomics screen that indicated activation of an in vivo compensatory pathway that leads to normalization of downstream metabolites such as ceramide. Differentiation of propositus-derived induced pluripotent stem cells to megakaryocytes followed by expression of functional KDSR showed correction of the aberrant cellular and biochemical phenotypes, corroborating the critical role of KDSR in proplatelet formation. Finally, Kdsr depletion in zebrafish recapitulated the thrombocytopenia and showed biochemical changes similar to those observed in the affected siblings. These studies support an important role for sphingolipids as regulators of cytoskeletal organization during megakaryopoiesis and proplatelet formation., (Copyright© 2019 Ferrata Storti Foundation.)- Published
- 2019
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46. A novel missense variant in SLC18A2 causes recessive brain monoamine vesicular transport disease and absent serotonin in platelets.
- Author
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Padmakumar M, Jaeken J, Ramaekers V, Lagae L, Greene D, Thys C, Van Geet C, BioResource N, Stirrups K, Downes K, Turro E, and Freson K
- Abstract
Background: Brain monoamine vesicular transport disease is an infantile onset neurodevelopmental disorder caused by variants in SLC18A2 , which codes for the vesicular monoamine transporter 2 (VMAT2) protein, involved in the transport of monoamines into synaptic vesicles and of serotonin into platelet dense granules., Case Presentation: The presented case is of a child, born of healthy consanguineous parents, who exhibited hypotonia, mental disability, epilepsy, uncontrolled movements, and gastrointestinal problems. A trial treatment with L-DOPA proved unsuccessful and the exact neurological involvement could not be discerned due to normal metabolic and brain magnetic resonance imaging results.Platelet studies and whole genome sequencing were performed. At age 4, the child's platelets showed a mild aggregation and adenosine triphosphate secretion defect that could be explained by dysmorphic dense granules observed by electron microscopy. Interestingly, the dense granules were almost completely depleted of serotonin. A novel homozygous p.P316A missense variant in VMAT2 was detected in the patient and the consanguineous parents were found to be heterozygous for this variant. Although the presence of VMAT2 on platelet dense granules has been demonstrated before, this is the first report of defective platelet dense granule function related to absent serotonin storage in a patient with VMAT2 deficiency but without obvious clinical bleeding problems., Conclusions: This study illustrates the homology between serotonin metabolism in brain and platelets, suggesting that these blood cells can be model cells for some pathways relevant for neurological diseases. The literature on VMAT2 deficiency is reviewed., Competing Interests: Manisha Padmakumar, Jaak Jaeken, Vincent Ramaekers, Lieven Lagae, Daniel Greene, Chantal Thys, Chris Van Geet, NIHR BioResource, Kathleen Stirrups, Kate Downes, Ernest Turro, and Kathleen Freson declare that they have no conflict of interest.
- Published
- 2019
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47. De novo variant in tyrosine kinase SRC causes thrombocytopenia: case report of a second family.
- Author
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De Kock L, Thys C, Downes K, Duarte D, Megy K, Van Geet C, and Freson K
- Subjects
- Child, Preschool, Female, Humans, Thrombocytopenia metabolism, src-Family Kinases metabolism
- Abstract
A germline heterozygous gain-of-function p .E527K variant in tyrosine kinase SRC was previously found to cause thrombocytopenia, myelofibrosis, bleeding, bone pathologies, premature edentulism and mild facial dysmorphia in nine patients of a single pedigree. Because of this variant, SRC loses its self-inhibitory capacity, causing constitutively active SRC expression in platelets. These patients have fewer and heterogeneous-sized platelets that are hyporeactive to collagen. We now report a 5-year-old girl with syndromic thrombocytopenia due to the same SRC-E527K variant that occurs de novo . A bone marrow biopsy, blood smear analysis, platelet aggregations, flow cytometric analysis of P -selectin, SRC expression and tyrosine phosphorylation studies were performed to confirm the similarities between the two families. This study strengthens our previous finding that hyperactive SRC kinase results in mild platelet dysfunction and thrombocytopenia with hypogranular platelets and further expands the clinical description of this syndrome to improve early recognition.
- Published
- 2019
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48. Phenotype description and response to thrombopoietin receptor agonist in DIAPH1 -related disorder.
- Author
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Westbury SK, Downes K, Burney C, Lozano ML, Obaji SG, Toh CH, Sevivas T, Morgan NV, Erber WN, Kempster C, Moore SF, Thys C, Papadia S, Ouwehand WH, Laffan MA, Gomez K, Freson K, Rivera J, and Mumford AD
- Subjects
- Adaptor Proteins, Signal Transducing chemistry, Adolescent, Adult, Aged, Biomarkers, Child, Child, Preschool, Female, Formins, Humans, Male, Middle Aged, Pedigree, Signal Transduction, Thrombocytopenia blood, Thrombocytopenia genetics, Thrombocytopenia metabolism, Young Adult, Adaptor Proteins, Signal Transducing genetics, Genetic Association Studies, Phenotype, Receptors, Thrombopoietin agonists
- Published
- 2018
- Full Text
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49. Abnormal differentiation of B cells and megakaryocytes in patients with Roifman syndrome.
- Author
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Heremans J, Garcia-Perez JE, Turro E, Schlenner SM, Casteels I, Collin R, de Zegher F, Greene D, Humblet-Baron S, Lesage S, Matthys P, Penkett CJ, Put K, Stirrups K, Thys C, Van Geet C, Van Nieuwenhove E, Wouters C, Meyts I, Freson K, and Liston A
- Subjects
- Adolescent, Cell Differentiation, Cell Lineage, Cell Proliferation, Cells, Cultured, Child, Child, Preschool, Humans, Infant, Mitogen-Activated Protein Kinase 1 metabolism, Pedigree, Primary Immunodeficiency Diseases, Protein Splicing genetics, Signal Transduction genetics, Exome Sequencing, B-Lymphocytes physiology, Blood Platelets physiology, Cardiomyopathies genetics, Immunologic Deficiency Syndromes genetics, Megakaryocytes physiology, X-Linked Intellectual Disability genetics, Mitogen-Activated Protein Kinase 1 genetics, Osteochondrodysplasias genetics, Precursor Cells, B-Lymphoid physiology, RNA, Small Nuclear genetics, Retinal Diseases genetics
- Abstract
Background: Roifman syndrome is a rare inherited disorder characterized by spondyloepiphyseal dysplasia, growth retardation, cognitive delay, hypogammaglobulinemia, and, in some patients, thrombocytopenia. Compound heterozygous variants in the small nuclear RNA gene RNU4ATAC, which is necessary for U12-type intron splicing, were identified recently as driving Roifman syndrome., Objective: We studied 3 patients from 2 unrelated kindreds harboring compound heterozygous or homozygous stem II variants in RNU4ATAC to gain insight into the mechanisms behind this disorder., Methods: We systematically profiled the immunologic and hematologic compartments of the 3 patients with Roifman syndrome and performed RNA sequencing to unravel important splicing defects in both cell lineages., Results: The patients exhibited a dramatic reduction in B-cell numbers, with differentiation halted at the transitional B-cell stage. Despite abundant B-cell activating factor availability, development past this B-cell activating factor-dependent stage was crippled, with disturbed minor splicing of the critical mitogen-activated protein kinase 1 signaling component. In the hematologic compartment patients with Roifman syndrome demonstrated defects in megakaryocyte differentiation, with inadequate generation of proplatelets. Platelets from patients with Roifman syndrome were rounder, with increased tubulin and actin levels, and contained increased α-granule and dense granule markers. Significant minor intron retention in 354 megakaryocyte genes was observed, including DIAPH1 and HPS1, genes known to regulate platelet and dense granule formation, respectively., Conclusion: Together, our results provide novel molecular and cellular data toward understanding the immunologic and hematologic features of Roifman syndrome., (Copyright © 2018 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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50. Assessment of cross-protection induced by a bluetongue virus (BTV) serotype 8 vaccine towards other BTV serotypes in experimental conditions.
- Author
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Martinelle L, Dal Pozzo F, Thys C, De Leeuw I, Van Campe W, De Clercq K, Thiry E, and Saegerman C
- Subjects
- Animals, Bluetongue immunology, Bluetongue virus genetics, Cattle, Cattle Diseases immunology, Male, Serogroup, Vaccines, Inactivated immunology, Bluetongue prevention & control, Bluetongue virus immunology, Cattle Diseases prevention & control, Cross Protection immunology, Viral Vaccines immunology
- Abstract
Bluetongue disease is caused by bluetongue virus (BTV) and BTV serotype 8 (BTV8) caused great economic damage in Europe during the last decade. From 1998 to 2007, in addition to BTV8, Europe had to face the emergence of BTV1, 2, 4, 9, and 16, spreading in countries where the virus has never been detected before. These unprecedented outbreaks trigger the need to evaluate and compare the clinical, virological and serological features of the European BTV serotypes in the local epidemiological context. In this study groups of calves were infected with one of the following European BTV serotypes, namely BTV1, 2, 4, 9 and 16. For each tested serotype, two groups of three male Holstein calves were used: one group vaccinated against BTV8, the other non-vaccinated. Clinical signs were quantified, viral RNA was detected in blood and organs and serological relationship was assessed. Calves were euthanized 35 days post-infection and necropsied. Most of the infected animals showed mild clinical signs. A partial serological cross reactivity has been reported between BTV8 and BTV4, and between BTV1 and BTV8. BTV2 and BTV4 viral RNA only reached low levels in blood, when compared to other serotypes, whereas in vitro growth assays could not highlight significant differences. Altogether the results of this study support the hypothesis of higher adaptation of some BTV strains to specific hosts, in this case calves. Furthermore, cross-protection resulting from a prior vaccination with BTV8 was highlighted based on cross-neutralization. However, the development of neutralizing antibodies is probably not totally explaining the mild protection induced by the heterologous vaccination.
- Published
- 2018
- Full Text
- View/download PDF
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