11 results on '"Timothy J. Keyes"'
Search Results
2. Single-cell technologies uncover intra-tumor heterogeneity in childhood cancers
- Author
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Yu-Chen Lo, Yuxuan Liu, Marte Kammersgaard, Abhishek Koladiya, Timothy J. Keyes, and Kara L. Davis
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Immunology ,Immunology and Allergy - Published
- 2023
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3. Sexual and Gender Minority Identity Disclosure from Undergraduate to Graduate Medical Education: Perceptions of Professional 'Outness' Among Medical Students
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Timothy J. Keyes, Shana Zucker, Teddy G. Goetz, Justin L. Jia, Samuel R. Bunting, Mitchell R. Lunn, and Leslee L. Subak
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General Medicine - Abstract
Increasingly, medical schools and residency programs seek to recruit trainees from diverse backgrounds, including sexual and gender minority (SGM) people. However, many trainees do not disclose their SGM identity during medical training due to fear of discrimination, which remains a challenge for institutional diversity and inclusion efforts. Despite this, relatively few studies have rigorously quantified trainees’ SGM identity self-disclosure across different stages of medical training. In 2018 and 2019, the Medical Student Pride Alliance (MSPA) distributed a 33-item online questionnaire interrogating practices and attitudes about SGM identity disclosure to medical students at allopathic and osteopathic medical schools in the United States. Here, we analyze these data to compare 1) the degree to which medical students disclose SGM identity in various professional contexts during undergraduate and graduate medical training and 2) students’ attitudes regarding SGM identity disclosure across those contexts. Overall, 1,162 medical students from 125 medical schools responded to the survey. Of these respondents, 629 (54%) were SGM-identified. Among SGM-identified respondents, students were most likely to report SGM identity self-disclosure to peers (91%) and least likely to report SGM identity self-disclosure on applications to residency or post-doctoral work (29%). Cisgender women were less likely to report SGM identity self-disclosure than other genders, and students performing research were more likely to report SGM identity self-disclosure among mentors. Overall, most (>90%) survey respondents supported trainees’ ability to disclose their sexual orientation or gender identity during medical training. This exploratory study provides preliminary evidence that SGM-identifying medical students often do not disclose their sexual orientation or gender identity in evaluative professional contexts. Future work should assess this phenomenon in a larger national sample and propose targeted policies to support SGM inclusion throughout medical training in general and on applications to graduate medical education specifically.
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- 2022
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4. Progressive B Cell Loss in Revertant X-SCID
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Kara L. Davis, Manish J. Butte, Suk See De Ravin, Timothy J. Keyes, Sergio D. Rosenzweig, Harry L. Malech, Hye Sun Kuehn, Maria Garcia-Lloret, Timothy J. Thauland, Christine Lee, Connie H. Lin, and Astraea Jager
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Male ,0301 basic medicine ,Somatic cell ,T-Lymphocytes ,Biopsy ,medicine.medical_treatment ,Hematopoietic stem cell transplantation ,X-Linked Combined Immunodeficiency Diseases ,Regenerative Medicine ,Whole Exome Sequencing ,0302 clinical medicine ,X Chromosome Inactivation ,Stem Cell Research - Nonembryonic - Human ,2.1 Biological and endogenous factors ,Immunology and Allergy ,Aetiology ,Child ,Skin ,B-Lymphocytes ,Repertoire ,High-Throughput Nucleotide Sequencing ,Phenotype ,medicine.anatomical_structure ,Child, Preschool ,Cytokines ,Stem Cell Research - Nonembryonic - Non-Human ,Disease Susceptibility ,Immunology ,T cells ,somatic reversion ,Biology ,SCID ,Article ,Immunophenotyping ,03 medical and health sciences ,Exome Sequencing ,medicine ,Humans ,Genetic Predisposition to Disease ,Lymphocyte Count ,Preschool ,B cell ,Progenitor ,B cells ,Transplantation ,Severe combined immunodeficiency ,Infant ,Stem Cell Research ,medicine.disease ,IL2RG ,030104 developmental biology ,Bone marrow ,Cytometry ,Biomarkers ,030215 immunology - Abstract
We report the case of a patient with X-linked severe combined immunodeficiency (X-SCID) who survived for over 20years without hematopoietic stem cell transplantation (HSCT) because of a somatic reversionmutation. An important feature of this rare case included the strategy to validate the pathogenicity of a variant of the IL2RG gene when the T and B cell lineages comprised only revertant cells. We studied the X-inactivation of sorted T cells from the mother to show that the pathogenic variant was indeed the cause of his SCID. One interesting feature was a progressive loss of B cells over 20years. CyTOF (cytometry time of flight) analysis of bone marrow offered a potential explanation of the B cell failure, with expansions of progenitor populations that suggest a developmental block. Another interesting feature was that the patient bore extensive granulomatous disease and skin cancers that contained T cells, despite severe T cell lymphopenia in the blood. Finally, the patient had a few hundred T cells on presentation but his TCRs comprised a very limited repertoire, supporting the important conclusion that repertoire size trumps numbers of T cells.
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- 2020
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5. A Cancer Biologist's Primer on Machine Learning Applications in High‐Dimensional Cytometry
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Kara L. Davis, Pablo Domizi, Yu-Chen Lo, Garry P. Nolan, and Timothy J. Keyes
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Proteomics ,0301 basic medicine ,Histology ,Computer science ,Target audience ,High dimensional ,Machine learning ,computer.software_genre ,Article ,Field (computer science) ,Pathology and Forensic Medicine ,Machine Learning ,03 medical and health sciences ,0302 clinical medicine ,Key terms ,Artificial Intelligence ,Neoplasms ,Humans ,Mass cytometry ,business.industry ,Computational Biology ,Cell Biology ,Variety (cybernetics) ,030104 developmental biology ,Conceptual framework ,030220 oncology & carcinogenesis ,Artificial intelligence ,business ,Cytometry ,computer - Abstract
The application of machine learning and artificial intelligence to high-dimensional cytometry data sets has increasingly become a staple of bioinformatic data analysis over the past decade. This is especially true in the field of cancer biology, where protocols for collecting multiparameter single-cell data in a high-throughput fashion are rapidly developed. As the use of machine learning methodology in cytometry becomes increasingly common, there is a need for cancer biologists to understand the basic theory and applications of a variety of algorithmic tools for analyzing and interpreting cytometry data. We introduce the reader to several keystone machine learning-based analytic approaches with an emphasis on defining key terms and introducing a conceptual framework for making translational or clinically relevant discoveries. The target audience consists of cancer cell biologists and physician-scientists interested in applying these tools to their own data, but who may have limited training in bioinformatics. © 2020 International Society for Advancement of Cytometry.
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- 2020
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6. Documenting Social Media Engagement as Scholarship: A New Model for Assessing Academic Accomplishment for the Health Professions
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Samantha L. Bernstein, Alice Eaton, Brendan Huang, Samantha P Davis, Lisa Kennedy Sheldon, Kerry Spencer, Amelia R Kirby, Jarna R Shah, Deborah D. Rupert, Carl G. Streed, Marion Leary, Mollie Marr, Jason V Meisel, Natalie Strand, Kim English, Erika A. Petersen, Jin Jun, Natasha Abadilla, Emily S Hahn, Darcy Burbage, Nadia A. Sam-Agudu, Heather Haq, Timothy J. Keyes, Ajay Major, Christian T. Sinclair, Naledi Marie Saul, Allison Rhodes, Mary K. Gurney, Tyler Adamson, Kimberly D. Acquaviva, Avery M. Trudell, Rakhee K Bhayani, Barak Raguan, Natasha Dhawan, Annina Elisabeth Büchi, Shikha Jain, Christopher L. Carroll, Jennifer T. Grier, Josh Mugele, and Wesley T. Kerr
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Service (systems architecture) ,medicine ,social media ,media_common.quotation_subject ,610 Medicine & health ,Health Informatics ,lcsh:Computer applications to medicine. Medical informatics ,dissemination ,contribution ,03 medical and health sciences ,0302 clinical medicine ,Mentorship ,Promotion (rank) ,360 Social problems & social services ,scholarship ,Social media ,accomplishment ,030212 general & internal medicine ,Sociology ,Curriculum ,media_common ,Original Paper ,education ,research ,Scope (project management) ,business.industry ,lcsh:Public aspects of medicine ,030208 emergency & critical care medicine ,lcsh:RA1-1270 ,promotion ,Public relations ,crowdsource ,innovation ,Democracy ,Scholarship ,tenure ,lcsh:R858-859.7 ,health professions ,business - Abstract
Background The traditional model of promotion and tenure in the health professions relies heavily on formal scholarship through teaching, research, and service. Institutions consider how much weight to give activities in each of these areas and determine a threshold for advancement. With the emergence of social media, scholars can engage wider audiences in creative ways and have a broader impact. Conventional metrics like the h-index do not account for social media impact. Social media engagement is poorly represented in most curricula vitae (CV) and therefore is undervalued in promotion and tenure reviews. Objective The objective was to develop crowdsourced guidelines for documenting social media scholarship. These guidelines aimed to provide a structure for documenting a scholar’s general impact on social media, as well as methods of documenting individual social media contributions exemplifying innovation, education, mentorship, advocacy, and dissemination. Methods To create unifying guidelines, we created a crowdsourced process that capitalized on the strengths of social media and generated a case example of successful use of the medium for academic collaboration. The primary author created a draft of the guidelines and then sought input from users on Twitter via a publicly accessible Google Document. There was no limitation on who could provide input and the work was done in a democratic, collaborative fashion. Contributors edited the draft over a period of 1 week (September 12-18, 2020). The primary and secondary authors then revised the draft to make it more concise. The guidelines and manuscript were then distributed to the contributors for edits and adopted by the group. All contributors were given the opportunity to serve as coauthors on the publication and were told upfront that authorship would depend on whether they were able to document the ways in which they met the 4 International Committee of Medical Journal Editors authorship criteria. Results We developed 2 sets of guidelines: Guidelines for Listing All Social Media Scholarship Under Public Scholarship (in Research/Scholarship Section of CV) and Guidelines for Listing Social Media Scholarship Under Research, Teaching, and Service Sections of CV. Institutions can choose which set fits their existing CV format. Conclusions With more uniformity, scholars can better represent the full scope and impact of their work. These guidelines are not intended to dictate how individual institutions should weigh social media contributions within promotion and tenure cases. Instead, by providing an initial set of guidelines, we hope to provide scholars and their institutions with a common format and language to document social media scholarship.
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- 2020
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7. Medical Student Pride Alliance: The first national LGBTQ+ medical student affinity organisation
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Michael Gisondi, Teddy G. Goetz, Shana Zucker, and Timothy J. Keyes
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Pride ,Students, Medical ,business.industry ,media_common.quotation_subject ,Gender Identity ,General Medicine ,Public relations ,Article ,Education ,Sexual and Gender Minorities ,Alliance ,Political science ,Humans ,business ,media_common - Published
- 2020
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8. Student Education About Pre-exposure Prophylaxis (PrEP) Varies Between Regions of the United States
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Robert H. Goldstein, Timothy D. Ritchie, Samuel R Bunting, Timothy J. Keyes, Sarah S. Garber, and Tamzin J Batteson
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Male ,medicine.medical_specialty ,Health Knowledge, Attitudes, Practice ,Anti-HIV Agents ,education ,Human immunodeficiency virus (HIV) ,HIV Infections ,medicine.disease_cause ,01 natural sciences ,Men who have sex with men ,03 medical and health sciences ,Pre-exposure prophylaxis ,Sexual and Gender Minorities ,0302 clinical medicine ,Transgender ,Internal Medicine ,medicine ,Humans ,030212 general & internal medicine ,0101 mathematics ,Medical prescription ,Homosexuality, Male ,Students ,Original Research ,business.industry ,010102 general mathematics ,Hiv incidence ,Survey research ,Student education ,United States ,Cross-Sectional Studies ,Family medicine ,Female ,Pre-Exposure Prophylaxis ,business - Abstract
BACKGROUND: Daily, oral pre-exposure prophylaxis (PrEP) is an effective and safe prevention strategy for people at risk for HIV. However, prescription of PrEP has been limited for patients at the highest risk. Disparities in PrEP prescription are pronounced among racial and gender minority patients. A significant body of literature indicates that practicing healthcare providers have little awareness and knowledge of PrEP. Very little work has investigated the education about PrEP among health professionals in training. OBJECTIVE: The objective of this study was to compare health professions students’ awareness of PrEP and education about PrEP between regions of the US, and to determine if correlations between regional HIV incidence and PrEP use were present. DESIGN: Survey study. PARTICIPANTS: A cross-sectional sample of health professions students (N = 1859) representing future prescribers (MD, DO, PA), pharmacists, and nurses in the US. KEY RESULTS: Overall, 83.4% of students were aware of PrEP, but only 62.2% of fourth-year students indicated they had been taught about PrEP at any time during their training. Education about PrEP was most comprehensive in the Northeastern US, the area with the highest PrEP to need ratio (4.7). In all regions, transgender patients and heterosexual men and women were least likely to be presented in education as PrEP candidates, and men who have sex with men were the most frequently presented. CONCLUSIONS: There are marked differences in education regarding PrEP both between academic programs and regions of the USA. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11606-020-05736-y) contains supplementary material, which is available to authorized users.
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- 2019
9. Navigating Controversy: A Critical Element of Medical Education
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Justin L. Jia, Marija Kamceva, and Timothy J. Keyes
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Medical education ,Medical psychology ,Students, Medical ,Education, Medical ,MEDLINE ,Humans ,Ethics, Medical ,General Medicine ,Element (criminal law) ,Psychology ,Education - Published
- 2018
10. Structural and functional features of central nervous system lymphatics
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J. David Peske, Tajie H. Harris, Jacob D. Eccles, Antoine Louveau, Igor Smirnov, Jonathan Kipnis, Noël C. Derecki, David Castle, Kevin S. Lee, Sherin J. Rouhani, Timothy J. Keyes, and James Mandell
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Central Nervous System ,Male ,Multidisciplinary ,business.industry ,Meningeal lymphatic vessels ,government.form_of_government ,Central nervous system ,Article ,3. Good health ,Lymphatic Endothelium ,Cerebrospinal fluid ,Lymphatic system ,Neuroimmunology ,medicine.anatomical_structure ,Immune system ,government ,Medicine ,Animals ,Humans ,Glymphatic system ,Female ,business ,Neuroscience ,Lymphatic Vessels - Abstract
One of the characteristics of the central nervous system is the lack of a classical lymphatic drainage system. Although it is now accepted that the central nervous system undergoes constant immune surveillance that takes place within the meningeal compartment, the mechanisms governing the entrance and exit of immune cells from the central nervous system remain poorly understood. In searching for T-cell gateways into and out of the meninges, we discovered functional lymphatic vessels lining the dural sinuses. These structures express all of the molecular hallmarks of lymphatic endothelial cells, are able to carry both fluid and immune cells from the cerebrospinal fluid, and are connected to the deep cervical lymph nodes. The unique location of these vessels may have impeded their discovery to date, thereby contributing to the long-held concept of the absence of lymphatic vasculature in the central nervous system. The discovery of the central nervous system lymphatic system may call for a reassessment of basic assumptions in neuroimmunology and sheds new light on the aetiology of neuroinflammatory and neurodegenerative diseases associated with immune system dysfunction.
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- 2015
11. Correction: Corrigendum: Structural and functional features of central nervous system lymphatic vessels
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Noël C. Derecki, Tajie H. Harris, Antoine Louveau, J. David Peske, Sherin J. Rouhani, Jacob D. Eccles, Jonathan Kipnis, Timothy J. Keyes, Igor Smirnov, James Mandell, Kevin S. Lee, and David Castle
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0301 basic medicine ,Multidisciplinary ,business.industry ,Functional features ,Central nervous system ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Neuroimmunology ,medicine.anatomical_structure ,Lymphatic system ,Medicine ,Biological system ,business ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Nature 523, 337–341 (2015); doi:10.1038/nature14432 We would like to correct this Letter, which demonstrated the molecular characteristics and functional nature of lymphatics serving the central nervous system (CNS), by adding two reference citations, of which we became aware after publication. Foldi et al.
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- 2016
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