80 results on '"Tomoya Yamazaki"'
Search Results
2. Enantioselective three-dimensional high-performance liquid chromatographic determination of amino acids in the Hayabusa2 returned samples from the asteroid Ryugu
- Author
-
Aogu Furusho, Chiharu Ishii, Takeyuki Akita, Mai Oyaide, Masashi Mita, Hiroshi Naraoka, Yoshinori Takano, Jason P. Dworkin, Yasuhiro Oba, Toshiki Koga, Kazuhiko Fukushima, Dan Aoki, Minako Hashiguchi, Hajime Mita, Yoshito Chikaraishi, Naohiko Ohkouchi, Nanako O. Ogawa, Saburo Sakai, Daniel P. Glavin, Jamie E. Elsila, Eric T. Parker, José C. Aponte, Hannah L. McLain, Francois-Regis Orthous-Daunay, Véronique Vuitton, Roland Thissen, Cédric Wolters, Philippe Schmitt-Kopplin, Alexander Ruf, Junko Isa, Norbert Hertkorn, John M. Eiler, Toshihiro Yoshimura, Haruna Sugahara, Heather V. Graham, Yoshihiro Furukawa, Daisuke Araoka, Satoru Tanaka, Takaaki Yoshikawa, Fumie Kabashima, Kazunori Sasaki, Hajime Sato, Tomoya Yamazaki, Morihiko Onose, Mayu Morita, Yuki Kimura, Kuniyuki Kano, Junken Aoki, Kosuke Fujishima, Shin-ichiro Nomura, Shogo Tachibana, Tomoki Nakamura, Takaaki Noguchi, Ryuji Okazaki, Hikaru Yabuta, Hisayoshi Yurimoto, Kanako Sakamoto, Toru Yada, Masahiro Nishimura, Aiko Nakato, Akiko Miyazaki, Kasumi Yogata, Masanao Abe, Tomohiro Usui, Makoto Yoshikawa, Takanao Saiki, Satoshi Tanaka, Fuyuto Terui, Satoru Nakazawa, Tatsuaki Okada, Sei-ichiro Watanabe, Yuichi Tsuda, and Kenji Hamase
- Subjects
Amino acids ,Enantiomer separation ,Three-dimensional HPLC ,Meteorite ,Asteroid ,Hayabusa2 ,Analytical chemistry ,QD71-142 - Abstract
The chirality of amino acids in extraterrestrial materials may provide an insight into the origin of the essential l-enantiopure amino acids in the terrestrial biosphere. In 2020, the Hayabusa2 mission succeeded in bringing back surface materials from the C-type asteroid (162173) Ryugu to the Earth. Amino acids were one of the targeted organic molecules to be studied in the Ryugu samples. To analyze the various structural isomers of amino acids, which were expected to be present, from the limited amount of the returned samples, the development of a highly-sensitive and selective analytical method was necessary. In the present study, a three-dimensional high-performance liquid chromatography (3D-HPLC) system has been developed for the enantioselective determination of five proteinogenic and three non-proteinogenic amino acids in the Ryugu samples, in which amino acids in the sample were separated by reversed-phase, anion-exchange and enantioselective columns after the fluorescence derivatization with 4-fluoro-7-nitro-2,1,3-benzoxadiozole. The applicability of the analytical system to the extraterrestrial samples was evaluated by analyzing several types of carbonaceous meteorites before applying the system to the Ryugu samples. In the analysis of the Ryugu samples, all of the target amino acids were successfully determined quantitatively. Non-proteinogenic amino acids including 2-amino-n-butyric acid, isovaline and norvaline, rarely present in the terrestrial environment, were found as almost racemic mixtures with 47.1 to 55.2%l.
- Published
- 2024
- Full Text
- View/download PDF
3. Anisotropy in spinodal-like dynamics of unknown water at ice V–water interface
- Author
-
Hiromasa Niinomi, Tomoya Yamazaki, Hiroki Nada, Tetsuya Hama, Akira Kouchi, Tomoya Oshikiri, Masaru Nakagawa, and Yuki Kimura
- Subjects
Medicine ,Science - Abstract
Abstract Experimentally demonstrating the existence of waters with local structures unlike that of common water is critical for understanding both the origin of the mysterious properties of water and liquid polymorphism in single component liquids. At the interfaces between water and ices Ih, III, and VI grown/melted under pressure, we previously discovered low- and high-density unknown waters, that are immiscible with the surrounding water. Here, we show, by in-situ optical microscopy, that an unknown water appears at the ice V–water interface via spinodal-like dynamics. The dewetting dynamics of the unknown water indicate that its characteristic velocity is ~ 90 m/s. The time evolution of the characteristic length of the spinodal-like undulation suggests that the dynamics may be described by a common model for spinodal decomposition of an immiscible liquid mixture. Spinodal-like dewetting dynamics of the unknown water transiently showed anisotropy, implying the property of a liquid crystal.
- Published
- 2023
- Full Text
- View/download PDF
4. Antibodies against native proteins of Mycobacterium tuberculosis can detect pulmonary tuberculosis patients
- Author
-
Desak Nyoman Surya Suameitria Dewi, Ni Made Mertaniasih, Soedarsono, Kimika Hagino, Tomoya Yamazaki, Yuriko Ozeki, Wayan Tunas Artama, Haruka Kobayashi, Erina Inouchi, Yutaka Yoshida, Satoshi Ishikawa, Amina Kaboso Shaban, Yoshitaka Tateishi, Akihito Nishiyama, Manabu Ato, and Sohkichi Matsumoto
- Subjects
Medicine ,Science - Abstract
Abstract Accurate point-of-care testing (POCT) is critical for managing tuberculosis (TB). However, current antibody-based diagnosis shows low specificity and sensitivity. To find proper antigen candidates for TB diagnosis by antibodies, we assessed IgGs responsiveness to Mycobacterium tuberculosis proteins in pulmonary TB (PTB) patients. We employed major secreted proteins, such as Rv1860, Ag85C, PstS1, Rv2878c, Ag85B, and Rv1926c that were directly purified from M. tuberculosis. In the first screening, we found that IgG levels were significantly elevated in PTB patients only against Rv1860, PstS1, and Ag85B among tested antigens. However, recombinant PstS1 and Ag85B from Escherichia coli (E. coli) couldn’t distinguish PTB patients and healthy controls (HC). Recombinant Rv1860 was not checked due to its little expression. Then, the 59 confirmed PTB patients from Soetomo General Academic Hospital, Surabaya, Indonesia, and 102 HC were tested to Rv1860 and Ag85B only due to the low yield of the PstS1 from M. tuberculosis. The ROC analysis using native Ag85B and Rv1860 showed an acceptable area under curve for diagnosis, which is 0.812 (95% CI 0.734–0.890, p
- Published
- 2023
- Full Text
- View/download PDF
5. Early Detection of Nucleation Events From Solution in LC-TEM by Machine Learning
- Author
-
Hiroyasu Katsuno, Yuki Kimura, Tomoya Yamazaki, and Ichigaku Takigawa
- Subjects
transmission electron microscopy ,object detection ,nucleation ,machine learning ,YOLOv5 ,Chemistry ,QD1-999 - Abstract
To support the detection, recording, and analysis of nucleation events during in situ observations, we developed an early detection system for nucleation events observed using a liquid-cell transmission electron microscope. Detectability was achieved using the machine learning equivalent of detection by humans watching a video numerous times. The detection system was applied to the nucleation of sodium chloride crystals from a saturated acetone solution of sodium chlorate. Nanoparticles with a radius of more greater than 150 nm were detected in a viewing area of 12 μm × 12 μm by the detection system. The analysis of the change in the size of the growing particles as a function of time suggested that the crystal phase of the particles with a radius smaller than 400 nm differed from that of the crystals larger than 400 nm. Moreover, the use of machine learning enabled the detection of numerous nanometer sized nuclei. The nucleation rate estimated from the machine-learning-based detection was of the same order as that estimated from the detection using manual procedures.
- Published
- 2022
- Full Text
- View/download PDF
6. UV-Induced Formation of Ice XI Observed Using an Ultra-High Vacuum Cryogenic Transmission Electron Microscope and its Implications for Planetary Science
- Author
-
Akira Kouchi, Yuki Kimura, Kensei Kitajima, Hiroyasu Katsuno, Hiroshi Hidaka, Yasuhiro Oba, Masashi Tsuge, Tomoya Yamazaki, Kazuyuki Fujita, Tetsuya Hama, Yukihiro Takahashi, Shunichi Nakatsubo, and Naoki Watanabe
- Subjects
ice XI ,hydrogen atom ordering ,UV-rays ,transmission electron microscopy ,solar system ices ,Chemistry ,QD1-999 - Abstract
The occurrence of hydrogen atom-ordered form of ice Ih, ice XI, in the outer Solar System has been discussed based on laboratory experiments because its ferroelectricity influences the physical processes in the outer Solar System. However, the formation of ice XI in that region is still unknown due to a lack of formation conditions at temperatures higher than 72 K and the effect of UV-rays on the phase transition from ice I to ice XI. As a result, we observed the UV-irradiation process on ice Ih and ice Ic using a newly developed ultra-high vacuum cryogenic transmission electron microscope. We found that ice Ih transformed to ice XI at temperatures between 75 and 140 K with a relatively small UV dose. Although ice Ic partially transformed to ice XI at 83 K, the rate of transformation was slower than for ice Ih. These findings point to the formation of ice XI at temperatures greater than 72 K via UV irradiation of ice I crystals in the Solar System; icy grains and the surfaces of icy satellites in the Jovian and Saturnian regions.
- Published
- 2021
- Full Text
- View/download PDF
7. Sounding-rocket microgravity experiments on alumina dust
- Author
-
Shinnosuke Ishizuka, Yuki Kimura, Itsuki Sakon, Hiroshi Kimura, Tomoya Yamazaki, Shinsuke Takeuchi, and Yuko Inatomi
- Subjects
Science - Abstract
Alumina is thought to be the main condensate to form in the gas outflow from oxygen-rich evolved stars. Here, the authors perform a condensation experiment with alumina in a low-gravity environment, and find spectroscopic evidence for a sharp feature at a wavelength of 13.55 μm.
- Published
- 2018
- Full Text
- View/download PDF
8. Resistivity characterisation of Hakone volcano, Central Japan, by three-dimensional magnetotelluric inversion
- Author
-
Ryokei Yoshimura, Yasuo Ogawa, Yohei Yukutake, Wataru Kanda, Shogo Komori, Hideaki Hase, Tada-nori Goto, Ryou Honda, Masatake Harada, Tomoya Yamazaki, Masato Kamo, Shingo Kawasaki, Tetsuya Higa, Takeshi Suzuki, Yojiro Yasuda, Masanori Tani, and Yoshiya Usui
- Subjects
Hakone volcano ,Magnetotellurics ,Resistivity structure ,Three-dimensional inversion ,Geography. Anthropology. Recreation ,Geodesy ,QB275-343 ,Geology ,QE1-996.5 - Abstract
Abstract On 29 June 2015, a small phreatic eruption occurred at Hakone volcano, Central Japan, forming several vents in the Owakudani geothermal area on the northern slope of the central cones. Intense earthquake swarm activity and geodetic signals corresponding to the 2015 eruption were also observed within the Hakone caldera. To complement these observations and to characterise the shallow resistivity structure of Hakone caldera, we carried out a three-dimensional inversion of magnetotelluric measurement data acquired at 64 sites across the region. We utilised an unstructured tetrahedral mesh for the inversion code of the edge-based finite element method to account for the steep topography of the region during the inversion process. The main features of the best-fit three-dimensional model are a bell-shaped conductor, the bottom of which shows good agreement with the upper limit of seismicity, beneath the central cones and the Owakudani geothermal area, and several buried bowl-shaped conductive zones beneath the Gora and Kojiri areas. We infer that the main bell-shaped conductor represents a hydrothermally altered zone that acts as a cap or seal to resist the upwelling of volcanic fluids. Enhanced volcanic activity may cause volcanic fluids to pass through the resistive body surrounded by the altered zone and thus promote brittle failure within the resistive body. The overlapping locations of the bowl-shaped conductors, the buried caldera structures and the presence of sodium-chloride-rich hot springs indicate that the conductors represent porous media saturated by high-salinity hot spring waters. The linear clusters of earthquake swarms beneath the Kojiri area may indicate several weak zones that formed due to these structural contrasts.
- Published
- 2018
- Full Text
- View/download PDF
9. An Open-Source, Low-Cost Measurement System for Collecting Hydrometeorological Data in the Open Field
- Author
-
Kenichi Tatsumi, Tomoya Yamazaki, and Hirohiko Ishikawa
- Subjects
precision agriculture ,Arduino ,high temporal resolution ,open source ,hydrometeorological measurement ,low cost ,Technology - Abstract
To realize precision agriculture at multiple locations in the field, a low-cost measurement system should be developed for easy collection of hydrometeorological data, such as temperature, moisture, and light. In this study, a compact and low-cost hydrometeorological measurement system with a simplified wire code, which is customizable according to the purpose of observation, was built using a circuit board that connects Arduino to the sensors, which was then implemented and analyzed. The developed system measures air and soil temperatures, soil water content, and photosynthetic photon flux density using a sensor connected to Arduino Uno and saves the continuous, high-temporal-resolution output to an SD card. The results obtained from continuous measurement showed that the data collected using this system was significantly better than those collected using commercially available equipment. Anyone can easily measure the weather environments by using this fully open, highly versatile, portable, and user-friendly system. This system can contribute to the growth and expansion of precision agriculture, field management, development of crop models, and laborsaving. It can also provide a global solution to ongoing agricultural issues and improve the efficiency of farming operations, particularly in developing and low-income countries.
- Published
- 2021
- Full Text
- View/download PDF
10. Machine learning refinement of in situ images acquired by low electron dose LC-TEM.
- Author
-
Hiroyasu Katsuno, Yuki Kimura, Tomoya Yamazaki, and Ichigaku Takigawa
- Published
- 2023
- Full Text
- View/download PDF
11. An Implementation of Theory Grid with Linked Data Technologies.
- Author
-
Tomoya Yamazaki, Atomu Sakuma, and Yuichi Goto
- Published
- 2018
- Full Text
- View/download PDF
12. In-situ observation of DL-alanine crystallization from a laser-trapped dense liquid droplet as a heterogeneous nucleation site.
- Author
-
Hiromasa Niinomi, Hiroshi Y. Yoshikawa, Ryuzo Kawamura, Tomoya Yamazaki, Tomoya Oshikiri, and Masaru Nakagawa
- Abstract
Nucleation from an aqueous solution is an important step in crystallization which controls the physicochemical properties of crystalline materials. Although dense liquid droplets are considered as a precursor of a crystal in the two-step nucleation model, their actual role is unclear. Our in-situ microscopic observations of the crystallization of DL-alanine from a dense liquid droplet trapped by laser tweezers show that liquid droplets play the role of a substrate, facilitating heterogeneous nucleation, rather than a precursor of a crystal. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
13. Fast improvement of TEM image with low-dose electrons by deep learning.
- Author
-
Hiroyasu Katsuno, Yuki Kimura, Tomoya Yamazaki, and Ichigaku Takigawa
- Published
- 2021
14. A Scalable and Plug-in Based System to Construct A Production-Level Knowledge Base.
- Author
-
Tomoya Yamazaki, Kentaro Nishi, Takuya Makabe, Mei Sasaki, Chihiro Nishimoto, Hiroki Iwasawa, Masaki Noguchi, and Yukihiro Tagami
- Published
- 2019
15. Tree PCA for Extracting Dominant Substructures from Labeled Rooted Trees.
- Author
-
Tomoya Yamazaki, Akihiro Yamamoto, and Tetsuji Kuboyama
- Published
- 2015
- Full Text
- View/download PDF
16. Chiral Ice Crystals in Space
- Author
-
Akira, Kouchi, Takashi, Shimonishi, Tomoya, Yamazaki, Masashi, Tsuge, Naoki, Nakatani, Kenji, Furuya, Hiromasa, Niinomi, Yasuhiro, Oba, Tetsuya, Hama, Hiroyasu, Katsuno, Naoki, Watanabe, and Yuki, Kimura
- Abstract
We observed the formation of CO, CH3OH, and H2O ices using a cryogenic transmission electron microscope, to determine if chiral ice crystals could form under the conditions of interstellar molecular clouds and young stellar objects (protoplanetary disks) and to clarify the crystalline structure of these ices. Our results suggest that the following ice crystals are chiral: crystalline CO (α-CO) formed on amorphous H2O (a-H2O) grains in a 10-K molecular cloud, crystalline CH3OH formed by the heating of amorphous CH3OH on a-H2O grains at 40–60 K in young stellar objects, and several polymorphs of hydrogen-ordered cubic ice crystals formed by the heating of a-H2O at 80–100 K and direct condensation at 120–140 K in protoplanetary disks. We also investigated candidates for other chiral ices using published data. We found that NH3 I and NH3·H2O I are chiral at low temperature and pressure conditions. If one-handed circularly polarized light is irradiated during the nucleation of these chiral ice crystals, homochiral crystals can be formed. These results have important implications for the origin of interstellar organic molecule homochirality.
- Published
- 2023
- Full Text
- View/download PDF
17. Liquid-Cell Transmission Electron Microscopy Observation of Two-Step Collapse Dynamics of Silicon Nanopillars on Evaporation of Propan-2-ol: Implications for Semiconductor Integration Density
- Author
-
Yuta Sasaki, Tomoya Yamazaki, and Yuki Kimura
- Subjects
LC-TEM ,nanostructures ,collapse dynamics ,in situ observation ,General Materials Science ,semiconductors ,capillary interactions - Abstract
Miniaturization of semiconductor devices has made structures more fragile, leading to potential collapses due to capillary forces during drying after wet cleaning. This has hampered the integration of transistors according to Moore's law. We have developed a method for preparing nanopillars in a liquid cell and have successfully observed their collapse by means of a crosssectional view in transmission electron microscopy. The dynamics of collapse as a result of capillary interactions involve two steps. First, the nanopillars collapse due to an imbalance in capillary forces caused by a difference in liquid levels at the gas-liquid interface. Second, a liquid pool formed between nanopillars maintains the collapsed state of the nanopillars through surface tension. The nanopillars recover on reimmersion in the liquid after the collapse. This method is effective, and is expected to contribute to the continued development of miniaturization and three-dimensionality of semiconductors.
- Published
- 2022
- Full Text
- View/download PDF
18. Low- and High-Density Unknown Waters at Ice–Water Interfaces
- Author
-
Hiromasa Niinomi, Akira Kouch, Tetsuya Hama, Hiroki Nada, Tomoya Yamazaki, and Yuki Kimura
- Subjects
Water ,General Materials Science ,Physical and Theoretical Chemistry - Abstract
Experimental confirmation of liquid polymorphs of water, high-density liquid (HDL) and low-density liquid (LDL), is desired for understanding not only the liquid state of matter but also the origin of the mysterious properties of water. However, this remains challenging because the liquid-liquid critical point of water lies in experimentally inaccessible supercooling conditions known as "no man's land". Here, we show by
- Published
- 2022
- Full Text
- View/download PDF
19. Feasibility of control of particle assembly by dielectrophoresis in liquid-cell transmission electron microscopy
- Author
-
Tomoya Yamazaki, Hiromasa Niinomi, and Yuki Kimura
- Subjects
dielectrophoresis ,Electrophoresis ,alternating current electric field ,Microscopy, Electron, Transmission ,Structural Biology ,in situ observation ,liquid-cell transmission electron microscopy ,Feasibility Studies ,Radiology, Nuclear Medicine and imaging ,particle assembly ,Instrumentation ,electrodes - Abstract
Liquid-cell transmission electron microscopy (LC-TEM) is a useful technique for observing phenomena in liquid samples with spatial and temporal resolutions similar to those of conventional transmission electron microscopy (TEM). This method is therefore expected to permit the visualization of phenomena previously inaccessible to conventional optical microscopy. However, dynamic processes such as nucleation are difficult to observe by this method because of difficulties in controlling the condition of the sample liquid in the observation area. To approach this problem, we focused on dielectrophoresis, in which electrodes are used to assemble particles, and we investigated the phenomena that occurred when an alternating-current signal was applied to an electrode in an existing liquid cell by using a phase-contrast optical microscope (PCM) and TEM. In PCM, we observed that colloidal particles in a solution were attracted to the electrodes to form assemblies, that the particles aligned along the electric field to form pearl chains and that the pearl chains accumulated to form colloidal crystals. However, these phenomena were not observed in the TEM study because of differences in the design of the relevant holders. The results of our study imply that the particle assembly by using dielectrophoretic forces in LC-TEM should be possible, but further studies, including electric device development, will be required to realize this in practice.
- Published
- 2022
- Full Text
- View/download PDF
20. Two types of amorphous protein particles facilitate crystal nucleation
- Author
-
Tomoya Yamazaki, Yuki Kimura, Peter G. Vekilov, Erika Furukawa, Manabu Shirai, Hiroaki Matsumoto, Alexander E. S. Van Driessche, and Katsuo Tsukamoto
- Published
- 2017
- Full Text
- View/download PDF
21. Dissolution enables dolomite crystal growth near ambient conditions.
- Author
-
Joonsoo Kim, Yuki Kimura, Puchala, Brian, Tomoya Yamazaki, Becker, Udo, and Wenhao Sun
- Published
- 2023
- Full Text
- View/download PDF
22. Is dielectrophoresis effective for increasing local concentration of particles in liquid-cell transmission electron microscopy?
- Author
-
Tomoya Yamazaki, Hiromasa Niinomi, Hiroyasu Katsuno, Hooman Hosseinkhannazer, Eric Daigle, and Yuki Kimura
- Subjects
Instrumentation - Published
- 2022
- Full Text
- View/download PDF
23. Ensemble Models for Detecting Wikidata Vandalism with Stacking - Team Honeyberry Vandalism Detector at WSDM Cup 2017.
- Author
-
Tomoya Yamazaki, Mei Sasaki, Naoya Murakami, Takuya Makabe, and Hiroki Iwasawa
- Published
- 2017
24. Observation of hydrogen-ordered cubic ice thin films on the surface of ice Ic nanocrystals upon coarsening
- Author
-
Akira Kouchi, Tomoya Yamazaki, Hiroyasu Katsuno, Hiroki Nada, Tetsuya Hama, and Yuki Kimura
- Subjects
General Physics and Astronomy ,Physical and Theoretical Chemistry - Published
- 2023
- Full Text
- View/download PDF
25. Polymer Relaxation Time Enhancement at Temperatures above Glass Transition Temperatures Predicted by Idealized Mode-Coupling Theory
- Author
-
Mitsuru Ishikawa, Keita Matsumoto, Tomoya Yamazaki, Risa Fukase, Yutaka Ichikawa, and Takayuki Uwada
- Abstract
The mode-coupling theory of glass transition predicts the relaxation time divergence of glass-forming materials at the crossover temperature, which is approximately 1.2 times the calorimetric glass transition temperature. However, this divergence has not been experimentally observed. This is known as the most serious drawback of the mode-coupling theory. The use of viscosity-sensitive single molecule fluorescence probes enables the detection of the poly(vinyl acetate) and poly(ethyl methacrylate) relaxation time enhancement around the crossover temperature, thereby supporting the prediction by the mode-coupling theory.
- Published
- 2022
- Full Text
- View/download PDF
26. Weighted Micro-Clustering: Application to Community Detection in Large-Scale Co-Purchasing Networks with User Attributes.
- Author
-
Tomoya Yamazaki, Nobuyuki Shimizu, Hayato Kobayashi, and Satoshi Yamauchi
- Published
- 2016
- Full Text
- View/download PDF
27. In-situ water-immersion experiments on amorphous silicates in the MgO–SiO2 system: implications for the onset of aqueous alteration in primitive meteorites
- Author
-
Yuki Kimura, Yohei Igami, Tomoya Yamazaki, Megumi Matsumoto, and Akira Tsuchiyama
- Subjects
Materials science ,Aqueous solution ,010504 meteorology & atmospheric sciences ,Forsterite ,engineering.material ,010502 geochemistry & geophysics ,01 natural sciences ,Silicate ,Amorphous solid ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Geochemistry and Petrology ,Chondrite ,Carbonaceous chondrite ,engineering ,Enstatite ,Dissolution ,0105 earth and related environmental sciences - Abstract
Amorphous silicates, abundant in primitive carbonaceous chondrites, are among the most primitive materials from the early Solar System. They show evidence of some aqueous alteration in the meteorite parent bodies, but it is not clear how this highly reactive material changed at an early stage after contact with water. Herein, we report in-situ experiments on the aqueous alteration of amorphous silicate nanoparticles (typically 70 nm in diameter); we used two different compositions that are similar to forsterite (MgO/SiO2 = 2.02) and enstatite (MgO/SiO2 = 1.15) in the simple MgO–SiO2 system to understand basic reaction principles at the onset of the aqueous alteration. The experiments were performed in pure water at room temperature using X-ray diffraction (XRD), transmission electron microscopy (TEM), and pH measurements. The in-situ TEM images of the nanoparticles—in particular those with the forsterite composition—gradually became difficult to recognize in water. The pH value of the water also increased with time, suggesting that preferential Mg2+ dissolution occurred from the amorphous silicates right after mixing with water. The in-situ XRD patterns showed that magnesium silicate hydrate (M-S-H), which is a poorly crystalline phase like a phyllosilicate, newly appeared. The M-S-H seems to have been formed via a dissolution–precipitation process. Its formation rate from amorphous silicates was considerably higher than from crystalline silicates, because amorphous silicates are highly metastable and have high solubility in water. M-S-H formation from the forsterite composition, which has a highly unstable amorphous structure, is ten times faster than from the enstatite composition. The M-S-Hs show string-like or tiny fragmental textures in the final dried products that are very similar to those observed in the matrices of some primitive carbonaceous chondrites. M-S-H would have been the initial product formed in the aqueous alteration of amorphous silicates in the meteorites; thus, it is an important tracer of early aqueous activity at low temperatures in the early Solar System. By comparing the in-situ observations with those obtained after drying the experimental samples, we found two types of M-S-Hs: epigenetic M-S-Hs—which have a slightly Si-rich composition—formed during drying, and syngenetic M-S-Hs formed by in-situ alteration. Carbonaceous chondrites may also contain these two types of hydrous silicates, and this should be investigated to understand the conditions for aqueous alteration in the early Solar System in more detail. The present study clearly showed the importance of Mg/Si ratio in the precursor materials, although the actual chondrites are in more complicated multi-component system. Future experiments based on the present results can extend the investigation to the system containing Fe, S, and other components as in carbonaceous chondrites.
- Published
- 2021
- Full Text
- View/download PDF
28. Evaluation of Rooting Media Containing Fallen Needles of Japanese Black Pine for Blueberry Cuttings
- Author
-
Tomoya Yamazaki, Kazuhiro Matsumoto, and Shinichi Takeuchi
- Subjects
Cutting ,Horticulture ,General Engineering ,General Earth and Planetary Sciences ,Biology ,General Environmental Science - Published
- 2021
- Full Text
- View/download PDF
29. Possible embryos and precursors of crystalline nuclei of calcium carbonate observed by liquid-cell transmission electron microscopy
- Author
-
Yuki Kimura, Tomoya Yamazaki, and Hiroyasu Katsuno
- Subjects
Microscopy, Electron, Transmission ,Physical and Theoretical Chemistry ,Crystallization ,Calcium Carbonate - Abstract
Several different building blocks or precursors play an important role in the early stages of the crystallization of calcium carbonate (CaCO3). Many studies have been conducted over a long period to elucidate the fundamental processes involved in this crystallization. Here, we report the role of an amorphous phase and embryo at the beginning of the nucleation of CaCO3 from solutions of relatively low supersaturation. Prenucleation crystals formed in amorphous calcium carbonate (ACC) at a significantly large formation rate of 2 x 10(22) m(-3) s(-1), suggesting that a low interfacial energy exists between the ACC and crystals. Only one calcite crystal exceeded the size for a critical nucleus (similar to 10(4) molecules) in 150 pre-nucleation crystals. Each pre-nucleation crystal might consist of a different polymorph, and ACCs have a similar composition and structure. A particle-detection algorithm, used in conjunction with machine learning, suggested that an embryo with a characteristic structure exists in solution and might play a crucial role in nucleation. No similar embryonic structure could be observed immediately after the dissolution of pre-nucleation particles, implying that their dissolution process is not simply the reverse process of their growth. This method should provide a new approach to understanding nucleation processes.
- Published
- 2022
30. Characteristics of Inconel 625—copper bimetallic structure fabricated by directed energy deposition
- Author
-
Xinchang Zhang, Frank W. Liou, Wenyuan Cui, Tomoya Yamazaki, Lan Li, Tan Pan, and Austin T. Sutton
- Subjects
0209 industrial biotechnology ,Materials science ,Mechanical Engineering ,chemistry.chemical_element ,02 engineering and technology ,Inconel 625 ,Thermal diffusivity ,Copper ,Industrial and Manufacturing Engineering ,Computer Science Applications ,Corrosion ,020901 industrial engineering & automation ,Thermal conductivity ,chemistry ,Control and Systems Engineering ,Ultimate tensile strength ,Elongation ,Composite material ,Porosity ,Software - Abstract
Inconel 625 (In625) is preferred under the circumstances where high strength and corrosion resistance at elevated temperatures are required. However, the restricted thermal conductivity constrains the application of In625 in high heat flux cases. The joining of materials with high thermal conductivity to In625 is capable of improving upon this limitation so as to adapt for temperature-sensitive requirements. In this study, a bi-metallic structure was fabricated by joining In625 on Copper 110 (Cu) substrate with directed energy deposition. Material examination indicated no crack and minor porosity were detected through and along the interface of two materials and the following as-deposited In625. Mechanical performances were characterized at both as-deposited and heat-treated conditions. The resultant yield strength and ultimate tensile strength of as-deposited In625 was 670.97 ± 5.43 MPa and 925.36 ± 9.90 MPa, respectively, with a mean maximum elongation of 0.416 mm/mm. Slightly decreases (by ~ 5%) in tensile strength were observed after heat treatment under 500 °C for 24 h with an enhancement in elongation by ~ 6%. Ductile fracture mode was observed on the fracture surfaces of broken tensile specimens. The impact toughness for as-deposited In625 and heat-treated In625 (under 600° for 24 h) was 118.058 ± 2.285 and 112.045 ± 5.755 J, respectively. A significant improvement in the thermal diffusivity of ~ 100% was experimentally measured when comparing the bi-metallic structure to pure In625. The thickness fraction of Cu played a significant role in the measured thermal diffusivity result.
- Published
- 2020
- Full Text
- View/download PDF
31. High mobility of lattice molecules and defects during the early stage of protein crystallization
- Author
-
Yuki Kimura, Tomoya Yamazaki, Alexander E. S. Van Driessche, Institut des Sciences de la Terre (ISTerre), and Institut national des sciences de l'Univers (INSU - CNRS)-Institut de recherche pour le développement [IRD] : UR219-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Gustave Eiffel-Université Grenoble Alpes (UGA)
- Subjects
Materials science ,02 engineering and technology ,Crystal structure ,law.invention ,03 medical and health sciences ,Microscopy, Electron, Transmission ,law ,Microscopy ,Molecule ,[CHIM]Chemical Sciences ,Crystallization ,030304 developmental biology ,[PHYS]Physics [physics] ,0303 health sciences ,Intermolecular force ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Crystallographic defect ,Transmission electron microscopy ,Chemical physics ,[SDU]Sciences of the Universe [physics] ,[SDE]Environmental Sciences ,Thermodynamics ,Muramidase ,0210 nano-technology ,Protein crystallization - Abstract
International audience; Protein crystals are expected to be useful not only for their molecular structure analysis but also as functional materials due to their unique properties. Although the generation and the propagation of defects during crystallization play critical roles in the final properties of protein crystals, the dynamics of these processes are poorly understood. By time-resolved liquid-cell transmission electron microscopy, we observed that nanosized crystal defects are surprisingly mobile during the early stages of the crystallization of a lysozyme as a model protein. This highly dynamic behavior of defects reveals that the lattice molecules are mobile throughout the crystal structure. Moreover, the disappearance of the defects indicated that intermolecular bonds can break and reform rapidly with little energetic cost, as reported in theoretical studies. All these findings are in marked contrast to the generally accepted notion that crystal lattices are rigid with very limited mobility of individual lattice molecules.
- Published
- 2020
- Full Text
- View/download PDF
32. Fast Improvement of TEM Images with Low-Dose Electrons by Deep Learning
- Author
-
Hiroyasu Katsuno, Yuki Kimura, Tomoya Yamazaki, and Ichigaku Takigawa
- Subjects
FOS: Computer and information sciences ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,Computer Science - Computer Vision and Pattern Recognition ,Electrons ,Electrical Engineering and Systems Science - Image and Video Processing ,Deep Learning ,Microscopy, Electron, Transmission ,transmission electron microscopy ,FOS: Electrical engineering, electronic engineering, information engineering ,Image Processing, Computer-Assisted ,nanoparticles ,Neural Networks, Computer ,fast improvement ,Instrumentation - Abstract
Low-electron-dose observation is indispensable for observing various samples using a transmission electron microscope; consequently, image processing has been used to improve transmission electron microscopy (TEM) images. To apply such image processing to in situ observations, we here apply a convolutional neural network to TEM imaging. Using a dataset that includes short-exposure images and long-exposure images, we develop a pipeline for processed short-exposure images, based on end-to-end training. The quality of images acquired with a total dose of approximately 5 e- per pixel becomes comparable to that of images acquired with a total dose of approximately 1000 e- per pixel. Because the conversion time is approximately 8 ms, in situ observation at 125 fps is possible. This imaging technique enables in situ observation of electron-beam-sensitive specimens., Comment: 8 pages, 7 figures, 3 tables
- Published
- 2022
33. Early Detection of Nucleation Events From Solution in LC-TEM by Machine Learning
- Author
-
Hiroyasu Katsuno, Yuki Kimura, Tomoya Yamazaki, and Ichigaku Takigawa
- Subjects
Chemistry ,machine learning ,YOLOv5 ,nucleation ,transmission electron microscopy ,object detection ,General Chemistry ,QD1-999 ,Original Research - Abstract
To support the detection, recording, and analysis of nucleation events during in situ observations, we developed an early detection system for nucleation events observed using a liquid-cell transmission electron microscope. Detectability was achieved using the machine learning equivalent of detection by humans watching a video numerous times. The detection system was applied to the nucleation of sodium chloride crystals from a saturated acetone solution of sodium chlorate. Nanoparticles with a radius of more greater than 150 nm were detected in a viewing area of 12 μm × 12 μm by the detection system. The analysis of the change in the size of the growing particles as a function of time suggested that the crystal phase of the particles with a radius smaller than 400 nm differed from that of the crystals larger than 400 nm. Moreover, the use of machine learning enabled the detection of numerous nanometer sized nuclei. The nucleation rate estimated from the machine-learning-based detection was of the same order as that estimated from the detection using manual procedures.
- Published
- 2021
34. Radiolysis-Induced Crystallization of Sodium Chloride in Acetone by Electron Beam Irradiation
- Author
-
Yuki Kimura and Tomoya Yamazaki
- Subjects
crystallization ,Sodium ,Inorganic chemistry ,in situ observation ,acetone ,radiolysis ,chemistry.chemical_element ,02 engineering and technology ,liquid cell transmission electron microscopy ,010402 general chemistry ,01 natural sciences ,Chloride ,law.invention ,chemistry.chemical_compound ,law ,medicine ,Crystallization ,Solubility ,Instrumentation ,Supersaturation ,solubility ,Chlorate ,021001 nanoscience & nanotechnology ,sodium chlorate ,0104 chemical sciences ,chemistry ,sodium chloride ,Radiolysis ,0210 nano-technology ,Sodium chlorate ,medicine.drug - Abstract
In situ liquid cell transmission electron microscopy (LC-TEM) is an innovative method for studying the processes involved in the formation of crystals in liquids. However, it is difficult to capture early stages of crystallization because of the small field of view and the unfavorable changes in sample composition resulting from electron-beam radiolysis. Nevertheless, if the radiolysis required to induce the crystallization of a sample could be controlled in LC-TEM, this would be advantageous for observing the crystallization process. Here, we examined this possibility by using a mixture of sodium chlorate (NaClO3) and acetone in the LC-TEM. The electron beam induced the formation of dendritic crystals in a saturated acetone solution of NaClO3; moreover, these crystals consisted of sodium chloride (NaCl), rather than NaClO3, suggesting that chloride ions (Cl−), which were not present in the initial solution, were generated by radiolysis of chlorate ions ${\rm \lpar ClO}_3^- \rpar$. As a result, the solution then supersaturated with NaCl because its solubility in acetone is much lower than that of NaClO3. The combination of radiolysis and a solvent in which a solute is much less soluble is potentially useful for establishing crystallization conditions for materials that are difficult to crystallize directly in LC-TEM experiments.
- Published
- 2021
35. Rapid ortho-to-para nuclear spin conversion of H2 on a silicate dust surface
- Author
-
T. Namiyoshi, Akira Kouchi, Kenji Furuya, Tomoya Yamazaki, Naoki Watanabe, and Masashi Tsuge
- Subjects
Physics ,Surface (mathematics) ,Astrochemistry ,010504 meteorology & atmospheric sciences ,Molecular cloud ,FOS: Physical sciences ,Astronomy and Astrophysics ,01 natural sciences ,Astrophysics - Astrophysics of Galaxies ,Silicate ,chemistry.chemical_compound ,chemistry ,Space and Planetary Science ,Chemical physics ,Astrophysics of Galaxies (astro-ph.GA) ,0103 physical sciences ,010303 astronomy & astrophysics ,0105 earth and related environmental sciences ,Cosmic dust - Abstract
The H2 molecule has two nuclear spin isomers, the so-called ortho and para isomers. Nuclear spin conversion (NSC) between these states is forbidden in the gas phase. The energy difference between the lowest ortho and para states is as large as 14.7 meV, corresponding to ~170 K. Therefore, each state of H2 differently affects not only the chemistry but also the macroscopic gas dynamics in space, and thus, the ortho-to-para abundance ratio (OPR) of H2 has significant impacts on various astronomical phenomena. For a long time, the OPR of nascent H2 upon formation on dust grains has been assumed to have a statistical value of three and to gradually equilibrate in the gas phase at the temperature of the circumstances. Recently, NSC of H2 was experimentally revealed to occur on water ice at very low temperatures and thus incorporated into gas-dust chemical models. However, H2 molecules should form well before dust grains are coated by water ice. Information about how the OPR of H2 behaves on bare silicate dust before ice-mantle formation is lacking. Knowing the influence of the OPR of H2 if the OPR changes even on a bare silicate surface within an astronomically meaningful time scale is desirable. We report the first laboratory measurements of NSC of H2 physisorbed on amorphous silicate (Mg2SiO4) at temperatures up to 18 K. The conversion was found to occur very rapidly., Comment: 34 pages, 10 figures, 1 table; Accepted for publication in ApJ
- Published
- 2021
- Full Text
- View/download PDF
36. High-Density Liquid Water at a Water-Ice Interface
- Author
-
Satoshi Uda, Hiroki Nada, Yuki Kimura, Akira Kouchi, Hiromasa Niinomi, Tomoya Yamazaki, Jun Nozawa, Tetsuya Hama, and Junpei Okada
- Subjects
Ice III ,Materials science ,010405 organic chemistry ,Liquid water ,Spinodal decomposition ,Human life ,High density ,010402 general chemistry ,01 natural sciences ,Chemical reaction ,0104 chemical sciences ,Chemical engineering ,General Materials Science ,Water ice ,Physical and Theoretical Chemistry ,Water vapor - Abstract
Because ice surfaces catalyze various key chemical reactions impacting nature and human life, the structure and dynamics of interfacial layers between water vapor and ice have been extensively debated with attention to the quasi-liquid layer. Other interfaces between liquid water and ice remain relatively underexplored, despite their importance and abundance on the Earth and icy extraterrestrial bodies. By in situ optical microscopy, we found that a high-density liquid layer, distinguishable from bulk water, formed at the interface between water and high-pressure ice III or VI, when they were grown or melted in a sapphire anvil cell. The liquid layer showed a bicontinuous pattern, indicating that immiscible waters with distinct structures were separated on the interfaces in a similar manner to liquid-liquid phase separation through spinodal decomposition. Our observations not only provide a novel opportunity to explore ice surfaces but also give insight into the two kinds of structured water.
- Published
- 2020
37. Time-Resolved Observation of Evolution of Amyloid-β Oligomer with Temporary Salt Crystals
- Author
-
Yuji Goto, Yuki Kimura, Kichitaro Nakajima, Hirotsugu Ogi, Tomoya Yamazaki, and Masatomo So
- Subjects
Models, Molecular ,Time Factors ,Protein Conformation ,Kinetics ,Nucleation ,Salt (chemistry) ,Protein aggregation ,Oligomer ,Crystal ,chemistry.chemical_compound ,Protein Aggregates ,Protein structure ,Microscopy, Electron, Transmission ,Alzheimer Disease ,Humans ,General Materials Science ,Physical and Theoretical Chemistry ,Solubility ,chemistry.chemical_classification ,Amyloid beta-Peptides ,Chemistry ,Peptide Fragments ,Single Molecule Imaging ,Biophysics ,Salts - Abstract
Nakajima K., Yamazaki T., Kimura Y., et al. "Time-Resolved Observation of Evolution of Amyloid-β Oligomer with Temporary Salt Crystals", Journal of Physical Chemistry Letters, 11(15), 6176-6184, July 20, 2020. Copyright © 2020 American Chemical Society. https://doi.org/10.1021/acs.jpclett.0c01487., The aggregation behavior of amyloid-β (Aβ) peptides remains unclarified despite the fact that it is closely related to the pathogenic mechanism of Alzheimer's disease. Aβ peptides form diverse oligomers with various diameters before nucleation, making clarification of the mechanism involved a complex problem with conventional macroscopic analysis methods. Time-resolved single-molecule level analysis in bulk solution is thus required to fully understand their early stage aggregation behavior. Here, we perform time-resolved observation of the aggregation dynamics of Aβ oligomers in bulk solution using liquid-state transmission electron microscopy. Our observations reveal previously unknown behaviors. The most important discovery is that a salt crystal can precipitate even with a concentration much lower than its solubility, and it then dissolves in a short time, during which the aggregation reaction of Aβ peptides is significantly accelerated. These findings will provide new insights in the evolution of the Aβ oligomer.
- Published
- 2020
38. Immiscibility of Nucleating Aluminum Oxide Nanoparticles in Vapor
- Author
-
Yuki Kimura, Tetsuya Hama, Rikako Sato, Jun Kawano, Rafael Escribano, Tomoya Yamazaki, and Shinnosuke Ishizuka
- Subjects
Supersaturation ,Materials science ,Nucleation ,Nanoparticle ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,law.invention ,Amorphous solid ,Crystal ,General Energy ,Chemical engineering ,law ,Phase (matter) ,Molecule ,Physical and Theoretical Chemistry ,Crystallization ,0210 nano-technology ,Physics::Atmospheric and Oceanic Physics - Abstract
Multistep pathways in nucleation are now known to be ubiquitous and thus crucial to understand crystal formation processes. In a supersaturated mother phase, many types of source molecules are coagulated to form an amorphous or liquid-like intermediate, which subsequently transforms to a crystal. Such an intermediate possibly has a chemical formula that is inconsistent with that of the bulk crystal. Even in relatively simple vapor-phase homogeneous nucleation, the roles of the multicomponent mixtures at the nanoscale remain unknown. Here, by combining an experimental approach using in situ infrared (IR) measurements of homogeneous nucleation in the vapor phase and automatic quantum-chemical explorations of reaction routes, we show that a liquid-like nature of nucleating nanoparticles in the Al–O binary system induces immiscible phase separation. In an oxygen-deficient atmosphere, aluminum oxide nanoparticles form from supersaturated vapor with a unique shape composed of an Al metal head and an anisotropic...
- Published
- 2018
- Full Text
- View/download PDF
39. Resistivity characterisation of Hakone volcano, Central Japan, by three-dimensional magnetotelluric inversion
- Author
-
Takeshi Suzuki, Hideaki Hase, Yasuo Ogawa, Masatake Harada, Tada-nori Goto, Masato Kamo, Ryokei Yoshimura, Masanori Tani, Ryou Honda, Yoshiya Usui, Wataru Kanda, Shogo Komori, Shingo Kawasaki, Yohei Yukutake, Tomoya Yamazaki, Yojiro Yasuda, and Tetsuya Higa
- Subjects
010504 meteorology & atmospheric sciences ,Inversion (geology) ,lcsh:Geodesy ,Induced seismicity ,010502 geochemistry & geophysics ,Earthquake swarm ,01 natural sciences ,Hakone volcano ,Magnetotellurics ,Caldera ,Petrology ,Geothermal gradient ,0105 earth and related environmental sciences ,Resistivity structure ,Three-dimensional inversion ,geography ,lcsh:QB275-343 ,geography.geographical_feature_category ,lcsh:QE1-996.5 ,lcsh:Geography. Anthropology. Recreation ,Geology ,Phreatic eruption ,lcsh:Geology ,Volcano ,lcsh:G ,Space and Planetary Science - Abstract
On 29 June 2015, a small phreatic eruption occurred at Hakone volcano, Central Japan, forming several vents in the Owakudani geothermal area on the northern slope of the central cones. Intense earthquake swarm activity and geodetic signals corresponding to the 2015 eruption were also observed within the Hakone caldera. To complement these observations and to characterise the shallow resistivity structure of Hakone caldera, we carried out a three-dimensional inversion of magnetotelluric measurement data acquired at 64 sites across the region. We utilised an unstructured tetrahedral mesh for the inversion code of the edge-based finite element method to account for the steep topography of the region during the inversion process. The main features of the best-fit three-dimensional model are a bell-shaped conductor, the bottom of which shows good agreement with the upper limit of seismicity, beneath the central cones and the Owakudani geothermal area, and several buried bowl-shaped conductive zones beneath the Gora and Kojiri areas. We infer that the main bell-shaped conductor represents a hydrothermally altered zone that acts as a cap or seal to resist the upwelling of volcanic fluids. Enhanced volcanic activity may cause volcanic fluids to pass through the resistive body surrounded by the altered zone and thus promote brittle failure within the resistive body. The overlapping locations of the bowl-shaped conductors, the buried caldera structures and the presence of sodium-chloride-rich hot springs indicate that the conductors represent porous media saturated by high-salinity hot spring waters. The linear clusters of earthquake swarms beneath the Kojiri area may indicate several weak zones that formed due to these structural contrasts.
- Published
- 2018
- Full Text
- View/download PDF
40. SUBJECTS OF THE LIQUEFACTION RESEARCH SEEN TO THE LIQUEFACTION DAMAGE OF THE GREAT EAST JAPAN EARTHQUAKE DISASTER
- Author
-
Motoki Kazama, Tomoya Yamazaki, Tadashi Kawai, Tomohiro Mori, and Jong Kwan Kim
- Subjects
Forensic engineering ,Earthquake disaster ,Liquefaction ,Geotechnical engineering ,Geology ,Ground subsidence - Published
- 2018
41. An Open-Source, Low-Cost Measurement System for Collecting Hydrometeorological Data in the Open Field
- Author
-
Tomoya Yamazaki, Hirohiko Ishikawa, and Kenichi Tatsumi
- Subjects
Technology ,Measure (data warehouse) ,precision agriculture ,Moisture ,low cost ,Computer science ,System of measurement ,Real-time computing ,Field (computer science) ,Printed circuit board ,high temporal resolution ,open source ,Arduino ,Hydrometeorology ,hydrometeorological measurement ,Precision agriculture - Abstract
To realize precision agriculture at multiple locations in the field, a low-cost measurement system should be developed for easy collection of hydrometeorological data, such as temperature, moisture, and light. In this study, a compact and low-cost hydrometeorological measurement system with a simplified wire code, which is customizable according to the purpose of observation, was built using a circuit board that connects Arduino to the sensors, which was then implemented and analyzed. The developed system measures air and soil temperatures, soil water content, and photosynthetic photon flux density using a sensor connected to Arduino Uno and saves the continuous, high-temporal-resolution output to an SD card. The results obtained from continuous measurement showed that the data collected using this system was significantly better than those collected using commercially available equipment. Anyone can easily measure the weather environments by using this fully open, highly versatile, portable, and user-friendly system. This system can contribute to the growth and expansion of precision agriculture, field management, development of crop models, and laborsaving. It can also provide a global solution to ongoing agricultural issues and improve the efficiency of farming operations, particularly in developing and low-income countries.
- Published
- 2021
- Full Text
- View/download PDF
42. Transmission Electron Microscopy Study of the Morphology of Ices Composed of H2O, CO2, and CO on Refractory Grains
- Author
-
Kazuyuki Fujita, Naoki Watanabe, Yasuhiro Oba, Masashi Tsuge, Shunichi Nakatsubo, Ken-ichiro Murata, Shogo Tachibana, Tetsuya Hama, Naoki Nakatani, Yuki Kimura, Tomoya Yamazaki, Takashi Shimonishi, Satoshi Okuzumi, Kenji Furuya, Sin-iti Sirono, Akira Kouchi, Hiroshi Hidaka, and Munetake Momose
- Subjects
Physics ,FOS: Physical sciences ,Sintering ,Astronomy and Astrophysics ,Astrophysics ,Substrate (electronics) ,Astrophysics - Astrophysics of Galaxies ,law.invention ,Amorphous solid ,Crystal ,Crystallinity ,Chemical engineering ,Space and Planetary Science ,Transmission electron microscopy ,law ,Astrophysics of Galaxies (astro-ph.GA) ,Thin film ,Crystallization - Abstract
It has been implicitly assumed that ices on grains in molecular clouds and proto planetary disks are formed by homogeneous layers regardless of their composition or crystallinity. To verify this assumption, we observed the H2O deposition onto refractory substrates and the crystallization of amorphous ices (H2O, CO2, and CO) using an ultra-high-vacuum transmission electron microscope. In the H2O-deposition experiments, we found that three-dimensional islands of crystalline ice (Ic) were formed at temperatures above 130 K. The crystallization experiments showed that uniform thin films of amorphous CO and H2O became three-dimensional islands of polyhedral crystals; amorphous CO2, on the other hand, became a thin film of nano crystalline CO2 covering the amorphous H2O. Our observations show that crystal morphologies strongly depend not only on the ice composition, but also on the substrate. Using experimental data concerning the crystallinity of deposited ices and the crystallization timescale of amorphous ices, we illustrated the criteria for ice crystallinity in space and outlined the macroscopic morphology of icy grains in molecular clouds as follows: amorphous H2O covered the refractory grain uniformly, CO2 nano-crystals were embedded in the amorphous H2O, and a polyhedral CO crystal was attached to the amorphous H2O. Furthermore, a change in the grain morphology in a proto-planetary disk is shown. These results have important implications for the chemical evolution of molecules, non-thermal desorption, collision of icy grains, and sintering., 60 pages, 18 figures, 3 tables, published in ApJ
- Published
- 2021
- Full Text
- View/download PDF
43. Two types of amorphous protein particles facilitate crystal nucleation
- Author
-
Katsuo Tsukamoto, Manabu Shirai, Hiroaki Matsumoto, Yuki Kimura, Erika Furukawa, Peter G. Vekilov, Tomoya Yamazaki, and Alexander E. S. Van Driessche
- Subjects
Materials science ,nucleation ,Population ,Nucleation ,in situ observation ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,law.invention ,Crystal ,law ,transmission electron microscopy ,Crystallization ,education ,lysozyme ,education.field_of_study ,Multidisciplinary ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Amorphous solid ,Crystallography ,Transmission electron microscopy ,Chemical physics ,Physical Sciences ,Particle ,0210 nano-technology ,Protein crystallization ,protein - Abstract
Nucleation, the primary step in crystallization, dictates the number of crystals, the distribution of their sizes, the polymorph selection, and other crucial properties of the crystal population. We used time-resolved liquid-cell transmission electron microscopy (TEM) to perform an in situ examination of the nucleation of lysozyme crystals. Our TEM images revealed that mesoscopic clusters, which are similar to those previously assumed to consist of a dense liquid and serve as nucleation precursors, are actually amorphous solid particles (ASPs) and act only as heterogeneous nucleation sites. Crystalline phases never form inside them. We demonstrate that a crystal appears within a noncrystalline particle assembling lysozyme on an ASP or a container wall, highlighting the role of heterogeneous nucleation. These findings represent a significant departure from the existing formulation of the two-step nucleation mechanism while reaffirming the role of noncrystalline particles. The insights gained may have significant implications in areas that rely on the production of protein crystals, such as structural biology, pharmacy, and biophysics, and for the fundamental understanding of crystallization mechanisms.
- Published
- 2017
44. Self-assembly of MoO3needles in gas current for cubic formation pathway
- Author
-
Yuki Kimura, Shinnosuke Ishizuka, Tomoya Yamazaki, Satoki Yokoi, Rikako Sato, and Tetsuya Hama
- Subjects
Supersaturation ,Chemistry ,Nucleation ,Nanoparticle ,Crystal growth ,02 engineering and technology ,Cubic crystal system ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Crystal ,Crystallography ,Transmission electron microscopy ,Chemical physics ,Particle ,General Materials Science ,0210 nano-technology - Abstract
Nucleation and subsequent rapid growth are enigmatic due to the unrevealed pathways. Despite the relatively simpler mechanism compared to nucleation and growth in solution, that in vapor has received little attention. The largest hindrance to unveiling this process may be observing the rapid and mesoscopic-scale phenomena. To overcome this hindrance, we combine an experimental approach with in situ spatial scanning Fourier-transform infrared spectroscopy, which reveals the nucleating and growing nanoparticles in vapor. The nanoparticles are then collected at different evolutionary stages and analyzed by ex situ transmission electron microscopy (TEM). Needle-shaped molybdenum oxide (MoO3) nanoparticles were formed within ∼0.1 s after homogeneous nucleation from a highly supersaturated vapor. Over one second, the needle particles gradually evolved into a cubic shape by fusion in a crystallographically favored orientation in a free-flying state in vapor. The similar sizes of the elongated axes of the needle and cubic structures suggest an additional growth stage, in which the needle particles become the growth units of the cubic particles. The morphology of a final crystal should reflect the formation environment of the particle because growing crystals are sensitive to the formation conditions such as temperature, concentration, and impurities. Although nucleation under very high supersaturation induces the anisotropic growth of the needle particles, this information of the initial nucleation environment is lost in the final cubic crystal. These findings enrich our understanding of pathways in the nucleation and growth of nanoparticles and provide new insights into the growth stages driven by oriented attachment.
- Published
- 2017
- Full Text
- View/download PDF
45. Two-Step Process in Homogeneous Nucleation of Alumina in Supersaturated Vapor
- Author
-
Naoki Watanabe, Akira Kouchi, Yuki Kimura, Shinnosuke Ishizuka, Tomoya Yamazaki, and Tetsuya Hama
- Subjects
Quenching ,Supersaturation ,Materials science ,General Chemical Engineering ,Nucleation ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,Crystal ,Crystallography ,Chemical engineering ,law ,Homogeneous ,Phase (matter) ,Scientific method ,Materials Chemistry ,Crystallization ,0210 nano-technology - Abstract
Multiple pathways in crystal nucleation are now known to be more common than previously predicted; it is, therefore, crucial to understand the early stages of crystallization. Even in relatively simple vapor-phase homogeneous nucleation, the process has significant potential diversity. Here, we experimentally show crystalline Al2O3 nanoparticles forming via precisely two steps in the nucleation process from supersaturated vapor with a moderate cooling rate. In situ FT-IR measurement of nucleation allowed us to observe the formation of Al2O3 nanoparticles. Liquid-like particles first nucleated from the vapor before crystallizing. The crystalline phase was preserved by quenching without further transformation into the most stable α-Al2O3 polymorph. The precipitated phase changed from δ-Al2O3 for pure Al2O3 to γ-Al2O3 or θ-Al2O3 by adding Sb or Cr, respectively. We demonstrate that a two-step process occurs in homogeneous nucleation of refractory materials from supersaturated vapor, which may facilitate poly...
- Published
- 2016
- Full Text
- View/download PDF
46. In situ FT-IR study on the homogeneous nucleation of nanoparticles of titanium oxides from highly supersaturated vapor
- Author
-
Shinnosuke Ishizuka, Yuki Kimura, and Tomoya Yamazaki
- Subjects
Anatase ,Materials science ,Inorganic chemistry ,Nucleation ,chemistry.chemical_element ,Nanoparticle ,02 engineering and technology ,01 natural sciences ,law.invention ,Nanomaterials ,Inorganic Chemistry ,law ,0103 physical sciences ,Materials Chemistry ,Crystallization ,Supercooling ,010302 applied physics ,Oxides ,Physical vapor deposition process ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Titanium oxide ,Chemical engineering ,chemistry ,0210 nano-technology ,Titanium - Abstract
The formation of nanoparticles of titanium oxides by homogeneous nucleation from highly supersaturated vapors was investigated by in situ Fourier transform IR spectroscopy and by observation of the resulting nanoparticles by transmission electron microscopy (TEM). Titanium metal was thermally evaporated in a specially designed chamber under a gaseous atmosphere of oxygen and argon. Nano particles nucleated and subsequently grew as they flew freely through the oxidizing gas atmosphere. Nascent nanoparticles of titanium oxides showed a broad IR absorption band at 10-20 mu m. Subsequently, the cooled nanoparticles showed a sharp crystalline anatase feature at 12.8 mu m. TEM observations showed the formation of spherical anatase nanoparticles. The IR spectral evolution showed that the titanium oxides nucleated as metastable liquid droplets, and that crystallization proceeded through secondary nucleation from the supercooled liquid droplets. This suggests that history of the titanium oxide nanoparticles, such as the temperature and oxidation that they experience after nucleation, determines their polymorphic form. (C) 2016 Elsevier B.V. All rights reserved.
- Published
- 2016
47. 1D oriented attachment of calcite nanocrystals: formation of single-crystalline rods through collision
- Author
-
Yuki Kimura, Yuya Oaki, Hiroaki Imai, Mihiro Takasaki, and Tomoya Yamazaki
- Subjects
Calcite ,Aqueous solution ,Materials science ,General Chemical Engineering ,Carbonation ,Mineralogy ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Mineralization (biology) ,Rod ,0104 chemical sciences ,chemistry.chemical_compound ,Calcium carbonate ,chemistry ,Chemical engineering ,Nanocrystal ,Elongation ,0210 nano-technology - Abstract
The oriented attachment of calcite, which is a main component of biominerals, was experimentally demonstrated in an aqueous system at ambient temperatures. Calcite nanoblocks ∼50 nm in size were prepared by carbonation of Ca(OH)2. One-dimensional (1D) alignment of the calcite nanoblocks was induced at ambient temperatures under a basic condition (pH ∼ 12), and single-crystalline rods over 1 µm were then formed through elongation in the c direction. The oriented attachment of the nanoscale building blocks was enhanced by increasing the collision frequency with stirring of the system, but was halted under a neutral pH condition with further carbonation. The controllable non-classical growth mode of calcium carbonate nanocrystals would provide significant information for biogenic and biomimetic mineralization in aqueous solutions.
- Published
- 2016
- Full Text
- View/download PDF
48. Electron-Beam-Induced Nucleation in an Antisolvent
- Author
-
Tomoya Yamazaki and Yuki Kimura
- Subjects
Materials science ,Nucleation ,Cathode ray ,Instrumentation ,Molecular physics - Published
- 2019
- Full Text
- View/download PDF
49. Self-assembly of MoO
- Author
-
Shinnosuke, Ishizuka, Yuki, Kimura, Satoki, Yokoi, Tomoya, Yamazaki, Rikako, Sato, and Tetsuya, Hama
- Abstract
Nucleation and subsequent rapid growth are enigmatic due to the unrevealed pathways. Despite the relatively simpler mechanism compared to nucleation and growth in solution, that in vapor has received little attention. The largest hindrance to unveiling this process may be observing the rapid and mesoscopic-scale phenomena. To overcome this hindrance, we combine an experimental approach with in situ spatial scanning Fourier-transform infrared spectroscopy, which reveals the nucleating and growing nanoparticles in vapor. The nanoparticles are then collected at different evolutionary stages and analyzed by ex situ transmission electron microscopy (TEM). Needle-shaped molybdenum oxide (MoO
- Published
- 2017
50. Fast crystalline ice formation at extremely low temperature through water/neon matrix sublimation
- Author
-
Naoki Watanabe, Tomoya Yamazaki, Tetsuya Hama, Yuki Kimura, Toshiki Sugimoto, Akira Kouchi, Shinnosuke Ishizuka, and Valerio Pirronello
- Subjects
INFRARED-SPECTRA ,STACKING DISORDER ,SURFACE ,General Physics and Astronomy ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Neon ,AMORPHOUS ICE ,Metastability ,Monolayer ,Molecule ,RAMAN-SPECTRA ,Physical and Theoretical Chemistry ,Chemistry ,NEON ,NUCLEAR-SPIN CONVERSION, AMORPHOUS ICE, INFRARED-SPECTRA, ISOTHERMAL COMPRESSIBILITY, STACKING DISORDER,THERMAL-EXPANSION, RAMAN-SPECTRA, CLUSTERS, SURFACE, NEON ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Amorphous solid ,Crystallography ,Chemical physics ,ISOTHERMAL COMPRESSIBILITY ,Amorphous ice ,Sublimation (phase transition) ,THERMAL-EXPANSION ,CLUSTERS ,0210 nano-technology ,NUCLEAR-SPIN CONVERSION ,Water vapor - Abstract
Crystalline ice formation requires water molecules to be sufficiently mobile to find and settle on the thermodynamically most stable site. Upon cooling, however, diffusion and rearrangement become increasingly kinetically difficult. Water ice grown by the condensation of water vapor in laboratory is thus generally assumed to be in a metastable amorphous form below 100 K. Here, we demonstrate the possibility of crystalline ice formation at extremely low temperature using a water/neon matrix (1/1000, 30 000 monolayers) prepared at 6 K, which is subsequently warmed to 11–12 K. In situ infrared spectroscopy revealed the assembly of the dispersed water molecules, forming crystalline ice I during the sublimation of the neon matrix for 40–250 seconds. This finding indicates that the high mobility of the water molecules during matrix sublimation can overcome the kinetic barrier to form crystals even at extremely low temperature.
- Published
- 2017
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.