95 results on '"Tompkins DM"'
Search Results
2. The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.
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Guerrero, FD, Bendele, KG, Ghaffari, N, Guhlin, J, Gedye, KR, Lawrence, KE, Dearden, PK, Harrop, TWR, Heath, ACG, Lun, Y, Metz, RP, Teel, P, Perez de Leon, A, Biggs, PJ, Pomroy, WE, Johnson, CD, Blood, PD, Bellgard, SE, Tompkins, DM, Guerrero, FD, Bendele, KG, Ghaffari, N, Guhlin, J, Gedye, KR, Lawrence, KE, Dearden, PK, Harrop, TWR, Heath, ACG, Lun, Y, Metz, RP, Teel, P, Perez de Leon, A, Biggs, PJ, Pomroy, WE, Johnson, CD, Blood, PD, Bellgard, SE, and Tompkins, DM
- Abstract
The longhorned tick, Haemaphysalis longicornis, feeds upon a wide range of bird and mammalian hosts. Mammalian hosts include cattle, deer, sheep, goats, humans, and horses. This tick is known to transmit a number of pathogens causing tick-borne diseases, and was the vector of a recent serious outbreak of oriental theileriosis in New Zealand. A New Zealand-USA consortium was established to sequence, assemble, and annotate the genome of this tick, using ticks obtained from New Zealand's North Island. In New Zealand, the tick is considered exclusively parthenogenetic and this trait was deemed useful for genome assembly. Very high molecular weight genomic DNA was sequenced on the Illumina HiSeq4000 and the long-read Pac Bio Sequel platforms. Twenty-eight SMRT cells produced a total of 21.3 million reads which were assembled with Canu on a reserved supercomputer node with access to 12 TB of RAM, running continuously for over 24 days. The final assembly dataset consisted of 34,211 contigs with an average contig length of 215,205 bp. The quality of the annotated genome was assessed by BUSCO analysis, an approach that provides quantitative measures for the quality of an assembled genome. Over 95% of the BUSCO gene set was found in the assembled genome. Only 48 of the 1066 BUSCO genes were missing and only 9 were present in a fragmented condition. The raw sequencing reads and the assembled contigs/scaffolds are archived at the National Center for Biotechnology Information.
- Published
- 2019
3. Presence and diversity of mixed avian Plasmodium spp. infections in introduced birds whose distribution overlapped with threatened New Zealand endemic birds
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Schoener, ER, primary, Tompkins, DM, additional, Parker, KA, additional, Howe, L, additional, and Castro, I, additional
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- 2019
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4. Presence and diversity of mixed avian Plasmodium spp. infections in introduced birds whose distribution overlapped with threatened New Zealand endemic birds.
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Schoener, ER, Tompkins, DM, Parker, KA, Howe, L, and Castro, I
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ENDEMIC birds ,PLASMODIUM ,BIRD infections ,AVIAN malaria ,MIXED infections ,BIRD food ,INTRODUCED species ,AVIAN influenza - Abstract
Aims: To determine the presence of infection and co-infection of Plasmodium lineages in introduced birds at translocation sites for the North Island saddleback (Philesturnus rufusater), to investigate their role as Plasmodium spp. reservoirs. Methods: Blood samples were collected from introduced bird species, with a special focus on blackbirds (Turdus merula) and song thrushes (Turdus philomelos), at six locations in the North Island of New Zealand that were the origin, or translocation sites, for North Island saddleback. Where available, blood smears were examined, and blood samples were tested using nested PCR with subsequent sequence analysis, for the presence of Plasmodium spp. Results: Of the 55 samples tested using PCR analysis, 39 (71%) were positive for Plasmodium spp., and 28/40 (62%) blood smears were positive for Plasmodium spp. Overall, 31 blood samples were from blackbirds with 28/31 (90%) samples positive for Plasmodium spp. Six distinct avian Plasmodium lineages were identified, including three cosmopolitan lineages; Plasmodium vaughani SYAT05 was detected in 16 samples, Plasmodium matutinum Linn1 in 10 samples and Plasmodium elongatum GRW6 in eight samples. Mixed infections with more than one lineage were detected in 12 samples. Samples from two Australian magpies (Gymnorhina tibicen) were positive for Plasmodium. sp. lineage MYNA02, previously not identified in New Zealand. Conclusions and clinical relevance: This is the first report from New Zealand in which specific Plasmodium spp. mixed infections have been found in introduced birds. Co-infections with several cosmopolitan Plasmodium lineages were identified, as well as the first report in New Zealand of an exotic avian Plasmodium sp. lineage, in Australian magpies. Whilst the role of introduced birds in maintaining and spreading pathogenic avian malaria in New Zealand is unclear, there is a potential infection risk to native birds, especially where distributions overlap. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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5. Seroprevalence of antibodies to Rickettsia typhi in the Waikato region of New Zealand
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Lim, Mei Yin, Weinstein, P, Bell, A, Hambling, T, Tompkins, DM, Slaney, D, Lim, Mei Yin, Weinstein, P, Bell, A, Hambling, T, Tompkins, DM, and Slaney, D
- Published
- 2016
6. Improving animal welfare standards while reducing disease exposure risk during euthanasia of trapped brushtail possums (Trichosurus vulpecula)
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Rouco, C, primary, Richardson, KS, additional, and Tompkins, DM, additional
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- 2015
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7. Exudative cloacitis in the kakapo(Strigops habroptilus)potentially linked toEscherichia coliinfection
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White, DJ, primary, Hall, RJ, additional, Jakob-Hoff, R, additional, Wang, J, additional, Jackson, B, additional, and Tompkins, DM, additional
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- 2015
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8. The role of multiple wildlife hosts in the persistence and spread of bovine tuberculosis in New Zealand
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Barron, MC, primary, Tompkins, DM, additional, Ramsey, DSL, additional, and Bosson, MAJ, additional
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- 2015
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9. No evidence that brushtail possums (Trichosurus vulpecula) forage on dung beetles (Coleoptera: Scarabaeidae) in New Zealand
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Forgie, SA, primary, Dymock, JJ, additional, and Tompkins, DM, additional
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- 2014
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10. Minimising number killed in long-term vertebrate pest management programmes, and associated economic incentives
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Warburton, B, primary, Tompkins, DM, additional, Choquenot, D, additional, and Cowan, P, additional
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- 2012
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11. Whataroa virus four decades on: emerging, persisting, or fading out?
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Tompkins, DM, primary, Paterson, R, additional, Massey, B, additional, and Gleeson, DM, additional
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- 2010
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12. Avian malaria (Plasmodiumspp) in yellow-eyed penguins: Investigating the cause of high seroprevalence but low observed infection
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Sturrock, HJW, primary and Tompkins, DM, additional
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- 2007
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13. Exudative cloacitis in the kakapo (Strigops habroptilus) potentially linked to Escherichia coli infection.
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White, DJ, Hall, RJ, Jakob-Hoff, R, Wang, J, Jackson, B, and Tompkins, DM
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CLOACA (Zoology) ,KAKAPO ,ESCHERICHIA coli infections in animals ,VETERINARY medicine ,DISEASES - Abstract
AIM: To investigate the initiating causes of cloacitis (inflammation of the cloaca) in kakapo (Strigops habroptilus). METHODS: Metagenomics using unbiased RNA or DNA sequencing was applied to faecal material from an 11-year-old female kakapo with exudative cloacitis, and a pool of eight birds (male and female aged 1–20 years) with no current signs or history of the disease. Faecal material from the diseased bird was collected pre- and post-treatment. For RNA sequencing, extracted RNA/DNA was subject to DNase, and the remaining RNA reverse transcribed to cDNA and subject to multiple displacement amplification prior to sequencing. RESULTS: No significant alignment to any known avian virus sequence was obtained from any faecal samples. However significant BLAST alignments to five bacteriophages known to infect enterobacteria were obtained. Strong evidence was obtained for the presence of the bacteriophage Escherichia phage TL-2011b, a bacteriophage known to occur inEscherichia colicausing outbreaks of foodborne disease in humans, in the sample from the diseased bird, but not the non-diseased pool. Differences inE. colicommunity structure between the diseased bird and the non-diseased pool were also apparent. CONCLUSIONS:Escherichia coliinfection of human origin is suggested as a possible cause of exudative cloacitis, although confirmatory work is required to test this hypothesis. [ABSTRACT FROM PUBLISHER]
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- 2015
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14. Sleep disorders in children after burn injury.
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Kravitz M, McCoy BJ, Tompkins DM, Daly W, Mulligan J, McCauley RL, Robson MC, and Herndon DN
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- 1993
15. Burn-induced cosmetic disfigurement: can it be measured reliably?
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Smith GM, Tompkins DM, Bigelow ME, and Antoon AY
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- 1988
16. Avian malaria (Plasmodium spp) in yellow-eyed penguins: Investigating the cause of high seroprevalence but low observed infection
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Sturrock, HJW and Tompkins, DM
- Abstract
AIM: To investigate the cause of a high seroprevalence of antibodies to Plasmodium spp known to cause avian malaria, but extremely low levels of observed infection, in yellow-eyed penguins, Megadyptes antipodes.METHODS: A polymerase chain reaction (PCR) test specific for malarial parasites was applied to DNA extracted from blood samples collected from 143 yellow-eyed penguins from an area where seroprevalence for malarial antibodies was known to be high but no parasites were observed in blood smears.RESULTS: None of the samples tested positive for malarial parasite DNA using the PCR test. Assuming a sensitivity of 90% for this test, this means that prevalence of infection was 95% likely to be <2.3% in this population during this sampling period.CONCLUSIONS: Serological studies of a population of adult yellow-eyed penguins indicated a high level of exposure to avian malaria parasites, but a correspondingly high level of infection was not observed and no evidence of malarial parasite DNA was found in the current study. Discrepancies between these findings and historical records of Plasmodium spp found in blood smears and post mortem may be explained either by inaccuracy of the serological test used, or by infection occurring in juveniles which is subsequently cleared in surviving adults.
- Published
- 2007
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17. Distribution and impacts of Tasmanian Devil Facial Tumor Disease
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McCallum, HI, Tompkins, DM, Jones, ME, Lachish, S, Marvanek, S, Lazenby, B, Hocking, G, Wiersma, J, Hawkins, CE, McCallum, HI, Tompkins, DM, Jones, ME, Lachish, S, Marvanek, S, Lazenby, B, Hocking, G, Wiersma, J, and Hawkins, CE
- Abstract
The Tasmanian devil, Sarcophilus harrisii, is the largest extant marsupial carnivore. In 1996, a debilitating facial tumor was reported. It is now clear that this is an invariably lethal infectious cancer. The disease has now spread across the majority of the range of the species and is likely to occur across the entire range within 5 to 10 years. The disease has lead to continuing declines of up to 90% and virtual disappearance of older age classes. Mark-recapture analysis and a preliminary epidemiological model developed for the population with the best longitudinal data both project local extinction in that area over a timeframe of 10 to 15 years from disease emergence. However, the prediction of extinction from the model is sensitive to the estimate of the latent period, which is poorly known. As transmission appears to occur by biting, much of which happens during sexual encounters, the dynamics of the disease may be typical of sexually transmitted diseases. This means that transmission is likely to be frequency-dependent with no threshold density for disease maintenance. Extinction over the entire current range of the devil is therefore a real possibility and an unacceptable risk.
18. Distribution and impacts of Tasmanian Devil Facial Tumor Disease
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McCallum, HI, Tompkins, DM, Jones, ME, Lachish, S, Marvanek, S, Lazenby, B, Hocking, G, Wiersma, J, Hawkins, CE, McCallum, HI, Tompkins, DM, Jones, ME, Lachish, S, Marvanek, S, Lazenby, B, Hocking, G, Wiersma, J, and Hawkins, CE
- Abstract
The Tasmanian devil, Sarcophilus harrisii, is the largest extant marsupial carnivore. In 1996, a debilitating facial tumor was reported. It is now clear that this is an invariably lethal infectious cancer. The disease has now spread across the majority of the range of the species and is likely to occur across the entire range within 5 to 10 years. The disease has lead to continuing declines of up to 90% and virtual disappearance of older age classes. Mark-recapture analysis and a preliminary epidemiological model developed for the population with the best longitudinal data both project local extinction in that area over a timeframe of 10 to 15 years from disease emergence. However, the prediction of extinction from the model is sensitive to the estimate of the latent period, which is poorly known. As transmission appears to occur by biting, much of which happens during sexual encounters, the dynamics of the disease may be typical of sexually transmitted diseases. This means that transmission is likely to be frequency-dependent with no threshold density for disease maintenance. Extinction over the entire current range of the devil is therefore a real possibility and an unacceptable risk.
19. Seroprevalence of antibodies to Rickettsia typhi in the Waikato region of New Zealand
- Author
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Philip Weinstein, Mei Yin Lim, Tammy Hambling, A Bell, David Slaney, Daniel M. Tompkins, Lim, MY, Weinstein, P, Bell, A, Hambling, T, Tompkins, DM, and Slaney, D
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0301 basic medicine ,Epidemiology ,030231 tropical medicine ,030106 microbiology ,Blotting, Western ,Murine typhus ,emerging infectious diseases ,03 medical and health sciences ,0302 clinical medicine ,Seroepidemiologic Studies ,Rickettsia typhi ,medicine ,Seroprevalence ,Humans ,Fluorescent Antibody Technique, Indirect ,biology ,Felis ,Rickettsia Infections ,Typhus, Endemic Flea-Borne ,biology.organism_classification ,medicine.disease ,Rickettsia felis ,Virology ,Antibodies, Bacterial ,Original Papers ,Infectious Diseases ,Rickettsiosis ,biology.protein ,murine typhus ,Antibody ,New Zealand - Abstract
SUMMARYThe first reported New Zealand-acquired case of murine typhus occurred near Auckland in 1989. Since then, 72 locally acquired cases have been recorded from northern New Zealand. By 2008, on the basis of the timing and distribution of cases, it appeared that murine typhus was escalating and spreading southwards. To explore the presence ofRickettsia typhiin the Waikato region, we conducted a seroprevalence study, using indirect immunofluorescence, Western blot, and cross-adsorption assays of blood donor samples. Of 950 human sera from Waikato, 12 (1·3%) hadR. typhiantibodies. The seroprevalence forR. typhiwas slightly higher in northern Waikato (1·4%) compared to the south (1·2%; no significant difference,χ2P= 0·768 atP< 0·05). Our results extend the reported southern range ofR. typhiby 140 km and indicate it is endemic in Waikato. Evidence of pastRickettsia felisinfections was also detected in six sera. Globally,R. felisis an emerging disease of concern and this pathogen should also be considered when locally acquired rickettsiosis is suspected. If public health interventions are to be implemented to reduce the risk of rickettsioses as a significant public health problem, improvements in rickettsial diagnostics and surveillance will be necessary.
- Published
- 2016
20. New insight into avian malaria vectors in New Zealand.
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Schoener ER, Tompkins DM, Howe L, and Castro IC
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- Animals, New Zealand epidemiology, Mosquito Vectors parasitology, Birds parasitology, DNA, Protozoan genetics, DNA, Protozoan analysis, Malaria, Avian parasitology, Anopheles genetics, Malaria, Culex genetics, Plasmodium genetics, Aedes genetics
- Abstract
Background: Mosquitoes (Culicidae) are vectors for most malaria parasites of the Plasmodium species and are required for Plasmodium spp. to complete their life cycle. Despite having 16 species of mosquitoes and the detection of many Plasmodium species in birds, little is known about the role of different mosquito species in the avian malaria life cycle in New Zealand., Methods: In this study, we used nested polymerase chain reaction (PCR) and real-time PCR to determine Plasmodium spp. prevalence and diversity of mitochondrial cytochrome b gene sequences in wild-caught mosquitoes sampled across ten sites on the North Island of New Zealand during 2012-2014. The mosquitoes were pooled by species and location collected, and the thorax and abdomens were examined separately for Plasmodium spp. DNA. Akaike information criterion (AIC) modeling was used to test whether location, year of sampling, and mosquito species were significant predictors of minimum infection rates (MIR)., Results: We collected 788 unengorged mosquitoes of six species, both native and introduced. The most frequently caught mosquito species were the introduced Aedes notoscriptus and the native Culex pervigilans. Plasmodium sp DNA was detected in 37% of matched thorax and abdomen pools. When considered separately, 33% of abdomen and 23% of thorax pools tested positive by nested PCR. The MIR of the positive thorax pools from introduced mosquito species was 1.79% for Ae. notoscriptus and 0% for Cx. quinquefasciatus, while the MIR for the positive thorax pools of native mosquito species was 4.9% for Cx. pervigilans and 0% for Opifex fuscus. For the overall MIR, site and mosquito species were significant predictors of Plasmodium overall MIR. Aedes notoscriptus and Cx. pervigilans were positive for malaria DNA in the thorax samples, indicating that they may play a role as avian malaria vectors. Four different Plasmodium lineages (SYAT05, LINN1, GRW6, and a new lineage of P (Haemamoeba) sp. AENOT11) were identified in the pooled samples., Conclusions: This is the first detection of avian Plasmodium DNA extracted from thoraxes of native Culex and introduced Aedes mosquito species in New Zealand and therefore the first study providing an indication of potential vectors in this country., (© 2024. The Author(s).)
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- 2024
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21. Pharmacist driven anticoagulation reversal program at a large academic medical center.
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Procopio GL, Jain RP, Bicking K, and Tompkins DM
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- Humans, Blood Coagulation Factors, Anticoagulants therapeutic use, Academic Medical Centers, Factor Xa, Recombinant Proteins, Factor Xa Inhibitors, Retrospective Studies, Pharmacists, Anticoagulation Reversal
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- 2024
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22. Direct and indirect impacts of synthetic biology on biodiversity conservation.
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Macfarlane NBW, Adams J, Bennett EL, Brooks TM, Delborne JA, Eggermont H, Endy D, Esvelt KM, Kolodziejczyk B, Kuiken T, Oliva MJ, Peña Moreno S, Slobodian L, Smith RB, Thizy D, Tompkins DM, Wei W, and Redford KH
- Abstract
The world's biodiversity is in crisis. Synthetic biology has the potential to transform biodiversity conservation, both directly and indirectly, in ways that are negative and positive. However, applying these biotechnology tools to environmental questions is fraught with uncertainty and could harm cultures, rights, livelihoods, and nature. Decisions about whether or not to use synthetic biology for conservation should be understood alongside the reality of ongoing biodiversity loss. In 2022, the 196 Parties to the United Nations Convention on Biological Diversity are negotiating the post-2020 Global Biodiversity Framework that will guide action by governments and other stakeholders for the next decade to conserve the worlds' biodiversity. To date, synthetic biologists, conservationists, and policy makers have operated in isolation. At this critical time, this review brings these diverse perspectives together and emerges out of the need for a balanced and inclusive examination of the potential application of these technologies to biodiversity conservation., Competing Interests: L.S. is on the advisory board (unpaid) of the Modern Agriculture Foundation, an Israeli non-profit organization that supports and promotes development of alternative protein including cultured meat. J.A.D. is a leader of U.S. stakeholder engagement for the Genetic Biocontrol of Invasive Rodents (GBIRd) partnership. D.E. holds stock in Ginkgo Bioworks Inc. and Antheia Inc., and is also an unpaid Director of the BioBricks Foundation, iGEM Foundation, and BioBuilder Foundation - all charities working to advance synthetic biology for public benefit., (© 2022 The Author(s).)
- Published
- 2022
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23. Reply: A Review of Pharmacologic Neurostimulant Use During Rehabilitation and Recovery after Brain Injury.
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Kakehi S and Tompkins DM
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- Humans, Brain Injuries drug therapy, Brain Injuries rehabilitation, Central Nervous System Stimulants
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- 2022
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24. Impact of a pharmacist driven anticoagulation reversal program at a large academic medical center.
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Procopio GL, Jain RP, Tompkins DM, Perez JM, and Bicking K
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- Academic Medical Centers, Adult, Anticoagulants adverse effects, Blood Coagulation Factors, Factor Xa, Factor Xa Inhibitors adverse effects, Humans, Retrospective Studies, Anticoagulation Reversal, Pharmacists
- Abstract
In major/life-threatening bleeding, administration of timely and appropriate reversal agents is imperative to reduce morbidity and mortality. Due to complexities associated with the use of reversal agents, a clinical pharmacist-driven anticoagulation reversal program (ARP) was developed. The goal of this program was to ensure appropriateness of reversal agents based on the clinical scenario, optimize selection and avoid unintended consequences. This study describes the impact of a pharmacist-driven anticoagulation program on patient outcomes and cost. A single center retrospective chart review of adult patients whom the ARP was consulted from October 2018 to January 2020 was performed. Patients were included in the efficacy analysis if they were > 18 years of age and presented with acute bleeding. Patients were excluded from the efficacy analysis if the recommended reversal agent was not administered, if a repeat head CT was not available for patients who presented with intracranial hemorrhage (ICH), or if the patient was not bleeding. All patients were included in the economic evaluation. The primary outcome was the percentage of patients who achieved effective hemostasis within 24 h of anticoagulation reversal. Secondary outcomes include incidence of thromboembolic events, in-hospital mortality, and cost avoidance. One hundred twenty-one patients were evaluated by the ARP with 92 patients included in the efficacy analysis. The primary sites of bleeding were ICH in 46% and gastrointestinal (GI) in 29%. Hemostasis was achieved in 84% of patients. Thrombotic events occurred in 7.4% of patients and in-hospital mortality was 26.4%. Total cost avoidance was $1,005,871.78. To our knowledge, this is the first study to evaluate the impact of a pharmacist-driven ARP on clinical and economic outcomes. Implementation of a pharmacist-driven ARP was associated with favorable outcomes and cost savings., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2022
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25. Review of Intravenous Acetaminophen for Analgesia in the Postoperative Setting.
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Tompkins DM, DiPasquale A, Segovia M, and Cohn SM
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- Acetaminophen therapeutic use, Administration, Intravenous, Analgesics, Non-Narcotic therapeutic use, Humans, Pain Management, Pain Measurement, Pain, Postoperative diagnosis, Pain, Postoperative etiology, Surgical Procedures, Operative adverse effects, Acetaminophen administration & dosage, Analgesics, Non-Narcotic administration & dosage, Pain, Postoperative drug therapy
- Abstract
Background: Acetaminophen is a non-opioid analgesic commonly utilized for pain control after several types of surgical procedures., Methods: This scoping primary literature review provides recommendations for intravenous (IV) acetaminophen use based on type of surgery., Results: Intravenous acetaminophen has been widely studied for postoperative pain control and has been compared to other agents such as NSAIDs, opioids, oral/rectal acetaminophen, and placebo. Some of the procedures studied include abdominal, gynecologic, orthopedic, neurosurgical, cardiac, renal, and genitourinary surgeries. Results of these studies have been conflicting and largely have not shown consistent clinical benefit., Conclusion: Overall, findings from this review did not support the notion that IV acetaminophen has significant efficacy for postoperative analgesia. Given the limited clinical benefit of IV acetaminophen, especially when compared to the oral or rectal formulations, use is generally not justifiable.
- Published
- 2021
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26. A Review of Pharmacologic Neurostimulant Use During Rehabilitation and Recovery After Brain Injury.
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Kakehi S and Tompkins DM
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- Humans, Modafinil, Prospective Studies, Risk Assessment, Brain Injuries drug therapy, Stroke
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Objective: To describe the efficacy and safety of pharmacologic neurostimulants after neurological injuries such as ischemic or hemorrhagic stroke and traumatic brain injury (TBI), critically evaluate the available literature, and make recommendations regarding which neurostimulants should be considered for use in clinical practice., Data Sources: A literature search of PubMed was performed (1953 to October 2020) to identify relevant articles. Search terms included the following: "neurostimulant, neurorehabilitation" AND "traumatic brain injury, cerebrovascular accident, or stroke." This review is limited to prospective studies and observational trials., Study Selection and Data Extraction: Relevant English-language studies conducted in humans were considered., Data Synthesis: Cognitive and motor deficits caused by stroke and TBI account for high rates of long-term disability. Although not well-established, pharmacologic agents, broadly characterized as neurostimulants, may be prescribed after brain injury to treat these deficits. When prescribing these medications, it is imperative to be aware of the supporting evidence in order to accurately gauge the risk-benefit profile of each agent., Relevance to Patient Care and Clinical Practice: The following presents a literature review critically evaluating clinical studies that investigate neurostimulant use after brain injury. The intent of this review is to serve as an evidence-based guide for clinicians., Conclusions: The pharmacologic agent with the most supporting literature is amantadine used for cognitive improvement after TBI. Other neurostimulants with positive, despite more limited, evidence include methylphenidate, modafinil, levodopa, and citalopram. Caution is warranted with other neurostimulants given higher rates of adverse effects or lack of benefit observed in clinical trials.
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- 2021
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27. Implementation and evaluation of a virtual learning advanced pharmacy practice experience.
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Johnston JP, Andrews LB, Adams CD, Cardinale M, Dixit D, Effendi MK, Tompkins DM, Wilczynski JA, and Opsha Y
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- Humans, Curriculum, Education, Distance methods, Education, Pharmacy methods, Problem-Based Learning methods, Professional Competence, Students, Pharmacy
- Abstract
Background and Purpose: The novel severe acute respiratory syndrome coronavirus 2 restricted student involvement in direct patient care. Virtual learning is an effective education strategy in pharmacy curriculums. This study aimed to evaluate student perceptions of virtual learning advanced pharmacy practice experiences (APPE) utilizing an electronic 12-question survey., Educational Activity and Setting: Virtual learning was developed and implemented, and students were surveyed at the end of the APPE. The survey was comprised of one open-ended and 11 Likert scale questions. It assessed implementation and use of virtual learning in place of a standard on-site APPE., Findings: Responses were attained from 19 students. Questions regarding resources provided and virtual learning enabling autonomous, independent learning had the highest percent of strong agreement. No responses indicated strong disagreement. Three questions solicited >10% response rate of somewhat disagree, 16% associated with virtual learning helping the student become a better member of the healthcare team after graduation. Open-ended responses acknowledged appreciation of the virtual APPE and presented material. One in six students commented on the ability to apply the learned information to direct patient care. Feedback was delivered on consideration for increased utility of patient care-orientated applications to facilitate simulation of real-life patient cases., Summary: Students who completed the virtual APPE were satisfied overall. Virtual teaching modalities may be incorporated into APPEs, particularly when direct patient care access is limited, but should not be used to completely replace the experience gained during direct patient care., Competing Interests: Declaration of Competing Interest None., (Copyright © 2021 Elsevier Inc. All rights reserved.)
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- 2021
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28. Are NSAIDs Safe? Assessing the Risk-Benefit Profile of Nonsteroidal Anti-inflammatory Drug Use in Postoperative Pain Management.
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Chang RW, Tompkins DM, and Cohn SM
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- Humans, Risk Assessment, Anti-Inflammatory Agents, Non-Steroidal adverse effects, Pain, Postoperative drug therapy
- Abstract
In this article, we review controversies in assessing the risk of serious adverse effects caused by administration of nonsteroidal anti-inflammatory drugs (NSAIDs). Our focus is upon NSAIDs used in short courses for the management of acute postoperative pain. In our review of the literature, we found that the risks of short-term NSAID use may be overemphasized. Specifically, that the likelihood of renal dysfunction, bleeding, nonunion of bone, gastric complications, and finally, cardiac dysfunction do not appear to be significantly increased when NSAIDs are used appropriately after surgery. The importance of this finding is that in light of the opioid epidemic, it is crucial to be aware of alternative analgesic options that are safe for postoperative pain control.
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- 2021
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29. The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.
- Author
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Guerrero FD, Bendele KG, Ghaffari N, Guhlin J, Gedye KR, Lawrence KE, Dearden PK, Harrop TWR, Heath ACG, Lun Y, Metz RP, Teel P, Perez de Leon A, Biggs PJ, Pomroy WE, Johnson CD, Blood PD, Bellgard SE, and Tompkins DM
- Abstract
The longhorned tick, Haemaphysalis longicornis , feeds upon a wide range of bird and mammalian hosts. Mammalian hosts include cattle, deer, sheep, goats, humans, and horses. This tick is known to transmit a number of pathogens causing tick-borne diseases, and was the vector of a recent serious outbreak of oriental theileriosis in New Zealand. A New Zealand-USA consortium was established to sequence, assemble, and annotate the genome of this tick, using ticks obtained from New Zealand's North Island. In New Zealand, the tick is considered exclusively parthenogenetic and this trait was deemed useful for genome assembly. Very high molecular weight genomic DNA was sequenced on the Illumina HiSeq4000 and the long-read Pac Bio Sequel platforms. Twenty-eight SMRT cells produced a total of 21.3 million reads which were assembled with Canu on a reserved supercomputer node with access to 12 TB of RAM, running continuously for over 24 days. The final assembly dataset consisted of 34,211 contigs with an average contig length of 215,205 bp. The quality of the annotated genome was assessed by BUSCO analysis, an approach that provides quantitative measures for the quality of an assembled genome. Over 95% of the BUSCO gene set was found in the assembled genome. Only 48 of the 1066 BUSCO genes were missing and only 9 were present in a fragmented condition. The raw sequencing reads and the assembled contigs/scaffolds are archived at the National Center for Biotechnology Information., (© 2019 The Author(s).)
- Published
- 2019
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30. Spatial utilization predicts animal social contact networks are not scale-free.
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James A, McLeod JC, Rouco C, Richardson KS, and Tompkins DM
- Abstract
While heterogeneity in social behaviour has been described in many human contexts it is often assumed to be less common in the animal kingdom even though scale-free networks are observed. This homogeneity raises the question of whether the patterns of behaviour necessary to account for scale-free social contact networks, where the degree distribution follows a power law, i.e. a few individuals are very highly connected but most have only a few connections, occur in animals, or whether other mechanisms are needed to produce realistic contact network architectures. We develop a space-utilization model for individual animal behaviour to predict the individuals' social contact network. Using basic properties of the χ
2 distribution we present a simple analytical result that allows the model to give a range of predictions with minimal computational effort. The model results are tested on data collected in New Zealand for the social contact networks of the wild brushtail possum ( Trichosurus vulpecula ). Our model provides a better prediction of network architecture than other simple models, including a scale-free model., Competing Interests: We have no competing interests.- Published
- 2017
- Full Text
- View/download PDF
31. mtDNA polymorphism and metabolic inhibition affect sperm performance in conplastic mice.
- Author
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Tourmente M, Hirose M, Ibrahim S, Dowling DK, Tompkins DM, Roldan ERS, and Gemmell NJ
- Subjects
- Animals, DNA, Mitochondrial metabolism, Glycolysis genetics, Haplotypes, Male, Mice, Inbred C57BL, Phenotype, Species Specificity, Sperm Count, Sperm Motility drug effects, Spermatozoa metabolism, Adenosine Triphosphate metabolism, DNA, Mitochondrial genetics, Glycolysis drug effects, Oxidative Phosphorylation drug effects, Polymorphism, Single Nucleotide, Spermatozoa drug effects, Uncoupling Agents pharmacology
- Abstract
Whereas a broad link exists between nucleotide substitutions in the mitochondrial genome (mtDNA) and a range of metabolic pathologies, exploration of the effect of specific mtDNA genotypes is on-going. Mitochondrial DNA mutations are of particular relevance for reproductive traits, since they are expected to have profound effects on male specific processes as a result of the strict maternal inheritance of mtDNA. Sperm motility is crucially dependent on ATP in most systems studied. However, the importance of mitochondrial function in the production of the ATP necessary for sperm function remains uncertain. In this study, we test the effect of mtDNA polymorphisms upon mouse sperm performance and bioenergetics by using five conplastic inbred strains that share the same nuclear background while differing in their mitochondrial genomes. We found that, while genetic polymorphisms across distinct mtDNA haplotypes are associated with modification in sperm progressive velocity, this effect is not related to ATP production. Furthermore, there is no association between the number of mtDNA polymorphisms and either (a) the magnitude of sperm performance decrease, or (b) performance response to specific inhibition of the main sperm metabolic pathways. The observed variability between strains may be explained in terms of additive effects of single nucleotide substitutions on mtDNA coding sequences, which have been stabilized through genetic drift in the different laboratory strains. Alternatively, the decreased sperm performance might have arisen from the disruption of the nuclear DNA/mtDNA interactions that have coevolved during the radiation of Mus musculus subspecies., (© 2017 Society for Reproduction and Fertility.)
- Published
- 2017
- Full Text
- View/download PDF
32. Introduction of a male-harming mitochondrial haplotype via 'Trojan Females' achieves population suppression in fruit flies.
- Author
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Wolff JN, Gemmell NJ, Tompkins DM, and Dowling DK
- Subjects
- Animals, Drosophila melanogaster, Female, Male, DNA, Mitochondrial genetics, Haplotypes, Infertility, Male, Mosquito Control methods, Mutation, Proof of Concept Study
- Abstract
Pests are a global threat to biodiversity, ecosystem function, and human health. Pest control approaches are thus numerous, but their implementation costly, damaging to non-target species, and ineffective at low population densities. The Trojan Female Technique (TFT) is a prospective self-perpetuating control technique that is species-specific and predicted to be effective at low densities. The goal of the TFT is to harness naturally occurring mutations in the mitochondrial genome that impair male fertility while having no effect on females. Here, we provide proof-of-concept for the TFT, by showing that introduction of a male fertility-impairing mtDNA haplotype into replicated populations of Drosophila melanogaster causes numerical population suppression, with the magnitude of effect positively correlated with its frequency at trial inception. Further development of the TFT could lead to establishing a control strategy that overcomes limitations of conventional approaches, with broad applicability to invertebrate and vertebrate species, to control environmental and economic pests.
- Published
- 2017
- Full Text
- View/download PDF
33. Gene Drives and Rodent Control: Response to Piaggio et al.
- Author
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Gemmell NJ and Tompkins DM
- Subjects
- Humans, Gene Drive Technology, Rodent Control
- Published
- 2017
- Full Text
- View/download PDF
34. Optimising survey effort to monitor environmental variables: A case study using New Zealand kiwifruit orchards.
- Author
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MacLeod CJ, Green P, Tompkins DM, Benge J, and Moller H
- Subjects
- Agriculture, Animals, Birds, Ecosystem, Environmental Monitoring methods, Fruit, New Zealand, Actinidia, Environmental Monitoring statistics & numerical data
- Abstract
Environmental monitoring is increasingly used to assess spatial and temporal trends in agricultural sustainability, and test the effectiveness of farm management policies. However, detecting changes in environmental variables is often technically and logistically challenging. To demonstrate how survey effort for environmental monitoring can be optimised, we applied the new statistical power analysis R package simr to pilot survey data. Specifically, we identified the amount of survey effort required to have an 80% chance of detecting specified trends (-1 to -4% pa) in 13 environmental variables on New Zealand kiwifruit orchards within an 11-year period. The variables assessed were related to soil status, agricultural pests (birds), or ecosystem composition (birds). Analyses were conducted on average values (for each orchard and year combination) to provide a consistent scale for comparison among variables. Survey frequency varied from annual (11 surveys) to every 5 years (3 surveys). Survey size was set at either 30, 60, 150 or 300 orchards. In broad terms, we show the power to detect a specified range of trends over an 11-year period in this sector is much higher for 'soil status' than for 'agricultural pest' or 'ecosystem composition'. Changes in one subset of native bird species (nectar-feeders) requiring a particularly high level of relative survey effort to detect with confidence. Monitoring soil status can thus be smaller and less frequent than those which also want to detect changes in agricultural pests or ecosystem composition (with the latter requiring the most effort) but will depend on the magnitude of changes that is meaningful to detect. This assessment thus allows kiwifruit industry in New Zealand to optimise survey design to the desired information, and provides a template for other industries to do likewise. Power analyses are now more accessible through the provision of the simr package, so deploying and integrating them into design and decision-making should be routine to reduce the risk of inefficiencies and opportunity costs., (Copyright © 2016. Published by Elsevier Ltd.)
- Published
- 2016
- Full Text
- View/download PDF
35. Is Avian Malaria Playing a Role in Native Bird Declines in New Zealand? Testing Hypotheses along an Elevational Gradient.
- Author
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Niebuhr CN, Poulin R, and Tompkins DM
- Subjects
- Animals, New Zealand, Plasmodium physiology, Species Specificity, Altitude, Birds parasitology, Introduced Species, Malaria, Avian epidemiology
- Abstract
The mosquito-borne disease avian malaria (Plasmodium spp.) has impacted both captive populations and wild individuals of native New Zealand bird species. However, whether or not it is a cause of concern to their wild populations is still unclear. In Hawaii, the disease has been a major factor in the population declines of some native forest bird species, often limiting their elevational distribution due to an inverse relationship between force of infection and elevation. While studies have investigated latitudinal patterns of infection in New Zealand, elevational patterns are unexplored. To address this, a survey was conducted in Nelson Lakes National Park, a site experiencing native bird declines in which disease has been suggested as playing a role, to investigate whether there is a similar inverse relationship in New Zealand. Results from blood samples (n = 436) collected over three seasons across a broad elevational range (650-1400 m) support there being such a relationship. In addition, an overall higher prevalence in non-native (14.1%) versus native birds (1.7%) may indicate differential impacts on these two groups, while particularly high prevalence in non-native Turdus spp. supports previous suggestions that they are key reservoir hosts for the disease. Overall, these findings add weight to the hypothesis that avian malaria is playing a role in ongoing declines of native New Zealand birds., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
- Full Text
- View/download PDF
36. Discovery and complete genome sequence of a novel circovirus-like virus in the endangered rowi kiwi, Apteryx rowi.
- Author
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White DJ, Hall RJ, Wang J, Moore NE, Park D, McInnes K, Gartrell BD, and Tompkins DM
- Subjects
- Animals, Capsid Proteins genetics, Circoviridae genetics, DNA, Single-Stranded genetics, DNA, Viral genetics, New Zealand, Open Reading Frames genetics, Phylogeny, Circoviridae Infections virology, Circovirus genetics, Genome, Viral genetics, Palaeognathae virology
- Abstract
Circoviruses are circular, non-enveloped, single-stranded DNA viruses around 2000 nucleotides (nt) in length and include the pathogenic species, Porcine circovirus 1 and Beak and feather disease virus, capable of causing significant morbidity and mortality. This group of viruses may be robust to degradation by external environments, and avian circoviruses are known to move between closely related hosts. Using a de novo metagenomic approach, followed by confirmatory PCR, we identify for the first time a circular Rep-encoding single-stranded (CRESS) DNA virus in New Zealand kiwi, Apteryx spp., derived from faecal matter of the rowi kiwi (A. rowi) showing signs of verminous dermatitis. The entire 2085 nt genome was cloned and sequenced and contains both capsid and replicase genes, as well as a conserved 9 nt motif. Phylogenetic analyses place it within Circoviridae, adjacent to other environmental CRESS-DNA viruses, and most closely related to badger circovirus-like virus (Meles meles circovirus-like virus). As the rowi is the most critically endangered kiwi, it is vital to understand the role of rowi kiwi circovirus-like virus as a possible pathogen and also any potential cross-species transmission.
- Published
- 2016
- Full Text
- View/download PDF
37. Seroprevalence of antibodies to Rickettsia typhi in the Waikato region of New Zealand.
- Author
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Lim MY, Weinstein P, Bell A, Hambling T, Tompkins DM, and Slaney D
- Subjects
- Blotting, Western, Fluorescent Antibody Technique, Indirect, Humans, New Zealand epidemiology, Rickettsia Infections microbiology, Seroepidemiologic Studies, Typhus, Endemic Flea-Borne epidemiology, Typhus, Endemic Flea-Borne microbiology, Antibodies, Bacterial blood, Rickettsia Infections epidemiology, Rickettsia felis isolation & purification, Rickettsia typhi isolation & purification
- Abstract
The first reported New Zealand-acquired case of murine typhus occurred near Auckland in 1989. Since then, 72 locally acquired cases have been recorded from northern New Zealand. By 2008, on the basis of the timing and distribution of cases, it appeared that murine typhus was escalating and spreading southwards. To explore the presence of Rickettsia typhi in the Waikato region, we conducted a seroprevalence study, using indirect immunofluorescence, Western blot, and cross-adsorption assays of blood donor samples. Of 950 human sera from Waikato, 12 (1·3%) had R. typhi antibodies. The seroprevalence for R. typhi was slightly higher in northern Waikato (1·4%) compared to the south (1·2%; no significant difference, χ 2 P = 0·768 at P < 0·05). Our results extend the reported southern range of R. typhi by 140 km and indicate it is endemic in Waikato. Evidence of past Rickettsia felis infections was also detected in six sera. Globally, R. felis is an emerging disease of concern and this pathogen should also be considered when locally acquired rickettsiosis is suspected. If public health interventions are to be implemented to reduce the risk of rickettsioses as a significant public health problem, improvements in rickettsial diagnostics and surveillance will be necessary.
- Published
- 2016
- Full Text
- View/download PDF
38. Sex difference in the survival rate of wild brushtail possums (Trichosurus vulpecula) experimentally challenged with bovine tuberculosis.
- Author
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Rouco C, Richardson KS, Buddle BM, French NP, and Tompkins DM
- Subjects
- Animals, Animals, Wild, Female, Introduced Species, Male, New Zealand, Sex Characteristics, Survival Rate, Tuberculosis microbiology, Mycobacterium bovis, Trichosurus, Tuberculosis veterinary
- Abstract
The main wildlife reservoir of bovine tuberculosis (TB) in New Zealand is the introduced brushtail possum (Trichosurus vulpecula), with spillover of infection from possums to livestock being regarded as the largest barrier to eradicating TB from the country. Past studies have experimentally challenged possums with Mycobacterium bovis (the causative agent of TB) to quantify infection parameters. However, the challenge models used are invariably non-representative of natural infection due to their resulting in much faster rates, and different clinical patterns of disease progression. We monitored the survival of 16 wild free-living possums, fitted with VHF mortality collars and experimentally challenged with a new model, out to six months post-challenge. The aim was to assess whether the new model does indeed result in an ongoing pathogenesis trajectory that is more reflective of natural TB in possums. The mean survival period of challenged possums (~4.6months) did not differ from that estimated for wild free-living possums with naturally acquired TB. In addition, and unexpectedly, infected males survived on average for five weeks longer than females. This significant difference has not been previously observed in experimental trials with other TB/possum challenge models. If this is reflective of natural disease (as is the survival period produced by the percutaneous challenge model), TB infected males in the wild may be generating more secondary cases of infection than infected females. This insight has important implications for understanding the dynamics of, and managing, the disease in its New Zealand wildlife reservoir., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
39. Mitonuclear interactions, mtDNA-mediated thermal plasticity, and implications for the Trojan Female Technique for pest control.
- Author
-
Wolff JN, Tompkins DM, Gemmell NJ, and Dowling DK
- Subjects
- Animals, Drosophila melanogaster genetics, Female, Fertility, Male, Cytochromes b genetics, DNA, Mitochondrial genetics, DNA, Mitochondrial metabolism, Drosophila melanogaster physiology, Mutation, Pest Control, Biological methods
- Abstract
Pest species pose major challenges to global economies, ecosystems, and health. Unfortunately, most conventional approaches to pest control remain costly, and temporary in effect. As such, a heritable variant of the Sterile Insect Technique (SIT) was proposed, based on the introduction of mitochondrial DNA mutations into pest populations, which impair male fertility but have no effects on females. Evidence for this "Trojan Female Technique" (TFT) was recently provided, in the form of a mutation in the mitochondrial cytochrome b gene (mt:Cyt-b) of Drosophila melanogaster which reduces male fertility across diverse nuclear backgrounds. However, recent studies have shown that the magnitude of mitochondrial genetic effects on the phenotype can vary greatly across environments, with mtDNA polymorphisms commonly entwined in genotype-by-environment (G × E) interactions. Here we test whether the male-sterilizing effects previously associated with the mt:Cyt-b mutation are consistent across three thermal and three nuclear genomic contexts. The effects of this mutation were indeed moderated by the nuclear background and thermal environment, but crucially the fertility of males carrying the mutation was invariably reduced relative to controls. This mutation thus constitutes a promising candidate for the further development of the TFT.
- Published
- 2016
- Full Text
- View/download PDF
40. The Trojan Female Technique for pest control: a candidate mitochondrial mutation confers low male fertility across diverse nuclear backgrounds in Drosophila melanogaster.
- Author
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Dowling DK, Tompkins DM, and Gemmell NJ
- Abstract
Pest species represent a major ongoing threat to global biodiversity. Effective management approaches are required that regulate pest numbers, while minimizing collateral damage to nontarget species. The Trojan Female Technique (TFT) was recently proposed as a prospective approach to biological pest control. The TFT draws on the evolutionary hypothesis that maternally inherited mitochondrial genomes are prone to the accumulation of male, but not female, harming mutations. These mutations could be harnessed to provide trans-generational fertility-based control of pest species. A candidate TFT mutation was recently described in the fruit fly, Drosophila melanogaster, which confers male-only sterility in the specific isogenic nuclear background in which it is maintained. However, applicability of the TFT relies on mitochondrial mutations whose male-sterilizing effects are general across nuclear genomic contexts. We test this assumption, expressing the candidate TFT-mutation bearing haplotype alongside a range of nuclear backgrounds and comparing its fertility in males, relative to that of control haplotypes. We document consistently lower fertility for males harbouring the TFT mutation, in both competitive and noncompetitive mating contexts, across all nuclear backgrounds screened. This indicates that TFT mutations conferring reduced male fertility can segregate within populations and could be harnessed to facilitate this novel form of pest control.
- Published
- 2015
- Full Text
- View/download PDF
41. Discovery of novel virus sequences in an isolated and threatened bat species, the New Zealand lesser short-tailed bat (Mystacina tuberculata).
- Author
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Wang J, Moore NE, Murray ZL, McInnes K, White DJ, Tompkins DM, and Hall RJ
- Subjects
- Animals, Endangered Species, Genome, Viral, Metagenomics, Molecular Sequence Data, New Zealand, Phylogeny, Viral Proteins genetics, Viruses classification, Viruses genetics, Chiroptera virology, Viruses isolation & purification
- Abstract
Bats harbour a diverse array of viruses, including significant human pathogens. Extensive metagenomic studies of material from bats, in particular guano, have revealed a large number of novel or divergent viral taxa that were previously unknown. New Zealand has only two extant indigenous terrestrial mammals, which are both bats, Mystacina tuberculata (the lesser short-tailed bat) and Chalinolobus tuberculatus (the long-tailed bat). Until the human introduction of exotic mammals, these species had been isolated from all other terrestrial mammals for over 1 million years (potentially over 16 million years for M. tuberculata). Four bat guano samples were collected from M. tuberculata roosts on the isolated offshore island of Whenua hou (Codfish Island) in New Zealand. Metagenomic analysis revealed that this species still hosts a plethora of divergent viruses. Whilst the majority of viruses detected were likely to be of dietary origin, some putative vertebrate virus sequences were identified. Papillomavirus, polyomavirus, calicivirus and hepevirus were found in the metagenomic data and subsequently confirmed using independent PCR assays and sequencing. The new hepevirus and calicivirus sequences may represent new genera within these viral families. Our findings may provide an insight into the origins of viral families, given their detection in an isolated host species.
- Published
- 2015
- Full Text
- View/download PDF
42. Emerging infectious diseases of wildlife: a critical perspective.
- Author
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Tompkins DM, Carver S, Jones ME, Krkošek M, and Skerratt LF
- Subjects
- Animals, Communicable Diseases, Emerging pathology, Communicable Diseases, Emerging transmission, Humans, Parasitic Diseases, Animal epidemiology, Parasitic Diseases, Animal pathology, Parasitic Diseases, Animal transmission, Vertebrates parasitology, Animals, Wild parasitology, Communicable Diseases, Emerging parasitology, Parasitic Diseases, Animal parasitology
- Abstract
We review the literature to distinguish reports of vertebrate wildlife disease emergence with sufficient evidence, enabling a robust assessment of emergence drivers. For potentially emerging agents that cannot be confirmed, sufficient data on prior absence (or a prior difference in disease dynamics) are frequently lacking. Improved surveillance, particularly for neglected host taxa, geographical regions and infectious agents, would enable more effective management should emergence occur. Exposure to domestic sources of infection and human-assisted exposure to wild sources were identified as the two main drivers of emergence across host taxa; the domestic source was primary for fish while the wild source was primary for other taxa. There was generally insufficient evidence for major roles of other hypothesized drivers of emergence., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
43. Piroplasms of New Zealand seabirds.
- Author
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Paparini A, McInnes LM, Di Placido D, Mackereth G, Tompkins DM, Clough R, Ryan UM, and Irwin PJ
- Subjects
- Animal Migration, Animals, Arachnid Vectors parasitology, Argasidae parasitology, Babesia genetics, Babesiosis epidemiology, Bird Diseases epidemiology, Birds, Cytochromes b genetics, DNA, Protozoan blood, DNA, Protozoan chemistry, DNA, Ribosomal blood, DNA, Ribosomal chemistry, Female, Genotype, Ixodes parasitology, Male, New Zealand epidemiology, Phylogeny, Polymerase Chain Reaction veterinary, RNA, Ribosomal, 18S genetics, Sequence Analysis, DNA veterinary, Tick Infestations parasitology, Tick Infestations veterinary, Babesia classification, Babesiosis parasitology, Bird Diseases parasitology, Charadriiformes parasitology
- Abstract
Blood and ectoparasitic ticks were collected from migratory seabirds in New Zealand, including Australasian gannets (n = 13) from two sites and red-billed gulls (n = 9) and white-fronted terns (n = 2) from a third location. Blood smears were screened for parasite presence by microscopy, while DNA from blood samples was subjected to PCR for the presence of tick-transmitted protozoan haemoparasites belonging to the order Piroplasmida. Parasites were identified by comparing small subunit ribosomal RNA (18S rDNA) gene sequences to related sequences on GenBank. Analyses indicated that nine birds were infected with unknown variants of a Babesia poelea-like parasite (recorded as genotypes I and II), while four harboured a piroplasm that was genetically similar to Babesia kiwiensis. There was no parasite stratification by bird species; both the gannets and gulls were positive for all three parasites, while the terns were positive for the B. kiwiensis-like and the B. poelea-like (genotype I) parasites. The B. kiwiensis-like parasite found in the birds was also found in two species of ticks: Carios capensis and Ixodes eudyptidis. This represents the first report of Babesia-positive ticks parasitising seabirds in New Zealand. The lack of host specificity and evidence of wide ranging distributions of the three piroplasm genotypes suggests there is a high degree of haemoparasite transmission occurring naturally between New Zealand seabird populations and species.
- Published
- 2014
- Full Text
- View/download PDF
44. New alphacoronavirus in Mystacina tuberculata bats, New Zealand.
- Author
-
Hall RJ, Wang J, Peacey M, Moore NE, McInnes K, and Tompkins DM
- Subjects
- Animals, New Zealand, Phylogeny, Chiroptera virology, Viruses genetics, Viruses isolation & purification
- Abstract
Because of recent interest in bats as reservoirs of emerging diseases, we investigated the presence of viruses in Mystacina tuberculata bats in New Zealand. A novel alphacoronavirus sequence was detected in guano from roosts of M. tuberculata bats in pristine indigenous forest on a remote offshore island (Codfish Island).
- Published
- 2014
- Full Text
- View/download PDF
45. Exploring the potential for Ross River virus emergence in New Zealand.
- Author
-
Tompkins DM and Slaney D
- Subjects
- Animals, Birds virology, Cats, Dogs, Humans, Insect Bites and Stings epidemiology, Insect Bites and Stings virology, Marsupialia virology, New Zealand, Rabbits, Ruminants virology, Swine virology, Aedes virology, Alphavirus Infections epidemiology, Culex virology, Culicidae virology, Disease Outbreaks, Insect Vectors virology, Ross River virus
- Abstract
Ross River virus (RRV) is an exotic vector-borne disease considered highly likely to emerge as a future human health issue in New Zealand, with its range expansion from Australia being driven by exotic mosquito introduction and improving conditions for mosquito breeding. We investigated our ability to assess the potential for such emergence using deterministic modeling and making preliminary predictions based on currently available evidence. Although data on actual mosquito densities (as opposed to indices) were identified as a need for predictions to be made with greater confidence, this approach generated a contrasting prediction to current opinion. Only limited potential for RRV emergence in New Zealand was predicted, with outbreaks in the human population more likely of concern in urban areas (mainly should major exotic vectors of the virus establish). The mechanistic nature of the model also allowed the understanding that if such outbreaks do occur, they will most likely be driven by virus amplification in dense human populations (as opposed to the spillover infection from wildlife common in Australia). With implications for biosecurity and health care resource allocation, modeling approaches such as that employed here have much to offer both for disease emergence prediction and surveillance strategy design.
- Published
- 2014
- Full Text
- View/download PDF
46. The Trojan female technique: a novel, effective and humane approach for pest population control.
- Author
-
Gemmell NJ, Jalilzadeh A, Didham RK, Soboleva T, and Tompkins DM
- Subjects
- Animals, Computer Simulation, Female, Male, Models, Biological, Population Density, DNA, Mitochondrial genetics, Infertility, Male, Mutation, Pest Control, Biological methods
- Abstract
Humankind's ongoing battle with pest species spans millennia. Pests cause or carry disease, damage or consume food crops and other resources, and drive global environmental change. Conventional approaches to pest management usually involve lethal control, but such approaches are costly, of varying efficiency and often have ethical issues. Thus, pest management via control of reproductive output is increasingly considered an optimal solution. One of the most successful such 'fertility control' strategies developed to date is the sterile male technique (SMT), in which large numbers of sterile males are released into a population each generation. However, this approach is time-consuming, labour-intensive and costly. We use mathematical models to test a new twist on the SMT, using maternally inherited mitochondrial (mtDNA) mutations that affect male, but not female reproductive fitness. 'Trojan females' carrying such mutations, and their female descendants, produce 'sterile-male'-equivalents under natural conditions over multiple generations. We find that the Trojan female technique (TFT) has the potential to be a novel humane approach for pest control. Single large releases and relatively few small repeat releases of Trojan females both provided effective and persistent control within relatively few generations. Although greatest efficacy was predicted for high-turnover species, the additive nature of multiple releases made the TFT applicable to the full range of life histories modelled. The extensive conservation of mtDNA among eukaryotes suggests this approach could have broad utility for pest control.
- Published
- 2013
- Full Text
- View/download PDF
47. Local effects of a global problem: modelling the risk of parasite-induced mortality in an intertidal trematode-amphipod system.
- Author
-
Studer A, Poulin R, and Tompkins DM
- Subjects
- Animals, Female, Hot Temperature, Amphipoda parasitology, Global Warming, Host-Parasite Interactions, Models, Biological, Trematoda physiology
- Abstract
The interactive effects of climate change and parasitism are of concern because of potentially important consequences for host populations, communities and entire ecosystems. In marine environments, the absence of historic baseline data on parasitism and disease limits our ability to make realistic predictions about these consequences. Here, we adapt a simulation model developed for a Northern Hemisphere intertidal host-parasite system to a comparable system in the Southern Hemisphere. The entire life cycle of the intertidal trematode parasite Maritrema novaezealandensis was modelled in order to investigate the interactive effects of parasitic infections and increasing temperatures on the population dynamics of the amphipod host Paracalliope novizealandiae. Despite uncertainties associated with the model and its parameterisation, most temperature increases that were predicted to cause the collapse of the modelled amphipod population in the long term lay within the range of predicted warming for the study area. The high vulnerability of the amphipods in the modelled system illustrates a potentially important ecological mechanism by which consequences of a global problem might manifest on the local scale.
- Published
- 2013
- Full Text
- View/download PDF
48. Predicted responses of invasive mammal communities to climate-related changes in mast frequency in forest ecosystems.
- Author
-
Tompkins DM, Byrom AE, and Pech RP
- Subjects
- Animals, Computer Simulation, Models, Biological, New Zealand, Population Dynamics, Seeds, Climate Change, Ecosystem, Introduced Species, Mice, Trees
- Abstract
Predicting the dynamics and impacts of multiple invasive species can be complex because ecological relationships, which occur among several trophic levels, are often incompletely understood. Further, the complexity of these trophic relationships exacerbates our inability to predict climate change effects on invaded ecosystems. We explore the hypothesis that interactions between two global change drivers, invasive vertebrates and climate change, will potentially make matters worse for native biodiversity. In New Zealand beech (Nothofagus spp.) forests, a highly irruptive invasive mammal community is driven by multi-annual resource pulses of beech seed (masting). Because mast frequency is predicted to increase with climate change, we use this as a model system to explore the extent to which such effects may influence invasive vertebrate communities, and the implications of such interactions for native biodiversity and its management. We build on an established model of trophic interactions in the system, combining it with a logistic probability mast function, the parameters of which were altered to simulate either contemporary conditions or conditions of more or less frequent masting. The model predicts that increased mast frequency will lead to populations of a top predator (the stoat) and a mesopredator (the ship rat) becoming less irruptive and being maintained at appreciably higher average abundances in this forest type. In addition, the ability of both current and in-development management approaches to suppress invasive mammals is predicted to be compromised. Because invasive mammals are key drivers of native fauna extinction in New Zealand, with the additional loss of associated functions such as pollination and seed dispersal, these predictions imply potentially serious adverse impacts of climate change for the conservation of biodiversity and ecosystem function. Our study also highlights the importance of long-term monitoring data for assessing and managing future impacts of global change drivers.
- Published
- 2013
- Full Text
- View/download PDF
49. Relative competence of native and exotic fish hosts for two generalist native trematodes.
- Author
-
Paterson RA, Lal A, Dale M, Townsend CR, Poulin R, and Tompkins DM
- Abstract
Exotic fish species frequently acquire native parasites despite the absence of closely related native hosts. They thus have the potential to affect native counterparts by altering native host-parasite dynamics. In New Zealand, exotic brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss have acquired two native trematodes (Telogaster opisthorchis and Stegodexamene anguillae) from their native definitive host (the longfin eel Anguilla dieffenbachii). We used a combination of field surveys and experimental infections to determine the relative competence of native and exotic fish hosts for these native parasites. Field observations indicated that the longfin eel was the superior host for both parasites, although differences between native and exotic hosts were less apparent for S. anguillae. Experimental infections indicated that both parasites had poorer establishment and survival in salmonids, although some worms matured and attained similar sizes to those in eels before dying. Overall, the field surveys and experimental infections indicate that these exotic salmonids are poor hosts of both native trematodes and their presence may decrease native parasite flow to native hosts.
- Published
- 2013
- Full Text
- View/download PDF
50. Sustained protection against tuberculosis conferred to a wildlife host by single dose oral vaccination.
- Author
-
Tompkins DM, Buddle BM, Whitford J, Cross ML, Yates GF, Lambeth MR, and Nugent G
- Subjects
- Administration, Oral, Animals, Animals, Wild, New Zealand, Tuberculosis microbiology, Tuberculosis prevention & control, BCG Vaccine administration & dosage, BCG Vaccine immunology, Mycobacterium bovis immunology, Trichosurus immunology, Tuberculosis veterinary
- Abstract
Background: Vaccination of wildlife against bovine tuberculosis (TB) is being considered by several countries to reduce the transmission of Mycobacterium bovis infection to livestock. In New Zealand, where introduced brushtail possums (Trichosurus vulpecula) are the major wildlife hosts, we have previously shown that repeat applications of a lipid-encapsulated oral bacille Calmette-Guerin (BCG) vaccine reduce the incidence of naturally acquired TB in wild possums. Here we extend this conceptual demonstration to an operational level, assessing long-term protection against TB conferred to free-living possums by a single oral immunisation., Methods: Possums in a non-TB area were randomly allocated to receive lipid-formulated BCG vaccine or remained unvaccinated. After initial trials to assess vaccine immunogenicity and establishment of protection within the first year post-vaccination, 13 individuals of each treatment group were relocated to a biosecurity facility and challenged (at 28 months post-vaccination) by subcutaneous injection of virulent M. bovis., Results: Vaccine immunogenicity and short-term protection were confirmed at 2 months and 12 months post-vaccination, respectively. In the long-term assessment, vaccinated possums had significantly reduced bacterial counts in peripheral lymph nodes compared to controls, with 0.6-2.3 log(10)-fold reductions in M. bovis burdens., Discussion: The magnitude of protective response by possums to experimental challenge at 28 months post-vaccination is known to equate to a high degree of protection against natural infection in this species. With techniques for oral bait delivery well advanced, the longevity of protection demonstrated here shows that an operable wildlife vaccine against TB is feasible., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
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