1. Host–guest binding selectivity of ethylated pillar[5]arene (EtP5A) towards octane, 1,7-octadiene, and 1,7-octadiyne: a computational investigation
- Author
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Adel Krid, Lotfi Belkhiri, Hamza Allal, Aleksey Kuznetsov, Abdou Boucekkine, Université Abderrahmane Mira [Béjaïa], Université frères Mentouri Constantine I (UMC), Université 20 Août 1955 Skikda, Universidad Tecnica Federico Santa Maria [Valparaiso] (UTFSM), Institut des Sciences Chimiques de Rennes (ISCR), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Ecole Nationale Supérieure de Chimie de Rennes (ENSCR)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Aleksey Kuznetsov appreciates the financial support of USM and computational facilities of the Department of Chemistry, ITA, Brazil.
- Subjects
Inclusion complexes ,NCI-RDG ,Pillar[5]arene ,Molecular docking ,NBO ,[CHIM]Chemical Sciences ,Host-guest ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,DFT - Abstract
Host−guest binding selectivity of the perethylated pillar[5]arene (EtP5A) macrocycles with aliphatic modified hydrocarbons, i.e., octane, 1,7-octadiene, and 1,7-octadiyne as guests, has been investigated computationally employing molecular docking simulations. Density Functional Theory (DFT) investigations were also performed on these host-guest complexes using the dispersion-corrected approach BLYP-D3(BJ)/TZP/COSMO calculations as implemented in the ADF program and two dispersion-corrected density functionals, ωB97XD and B97D, along with the 6-311G* basis set, coupled with the PCM solvation model as implemented in the Gaussian software. We performed analysis of the frontier molecular orbitals (FMO) and Natural Bond Orbitals (NBO), Energy Decomposition Analysis (EDA), and Non-Covalent Interaction (NCI-RDG) analysis. The study sheds light on the structures and binding energetics of EtP5A with the above-mentioned guests as well as on the physicochemical nature of the noncovalent interactions involved in these host-guest inclusion complexes. Based on the docking simulations, the EtP5A host revealed slightly better binding ability in the complex with the alkyne guest than with the octane and alkene, corroborated by the EDA analysis. The results showed that the complexation of EtP5A with the hydrocarbons is mainly governed by the interplay of electrostatic interactions and dispersive noncovalent interactions. These results agree well with NCI-RDG and NBO analysis showing that host − guest binding interactions result predominantly from electrostatic CH···π and van der Waals forces, the H-bonding being weak or not observed. The results obtained using different computational methods were found to be in good agreement and complementary.
- Published
- 2022
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