25 results on '"Utge, José"'
Search Results
2. First asserted record of the house mouse in Morocco: application of a multidisciplinary approach to the site of Rirha (5th − 1st c. BC)
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Domínguez-García, Ángel C., Utge, José, Larrue, Camille, Moclán, Abel, Kbiri Alaoui, Mohamed, Rocca, Elsa, Carrato, Charlotte, Callegarin, Laurent, De Chazelle, Claire-Anne, Oueslati, Tarek, and Stoetzel, Emmanuelle
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- 2024
- Full Text
- View/download PDF
3. Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics
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Armbrecht, Linda, Eisenhofer, Raphael, Utge, José, Sibert, Elizabeth C, Rocha, Fabio, Ward, Ryan, Pierella Karlusich, Juan José, Tirichine, Leila, Norris, Richard, Summers, Mindi, and Bowler, Chris
- Subjects
Genetics - Abstract
Sedimentary ancient DNA (sedaDNA) analyses are increasingly used to reconstruct marine ecosystems. The majority of marine sedaDNA studies use a metabarcoding approach (extraction and analysis of specific DNA fragments of a defined length), targeting short taxonomic marker genes. Promising examples are 18S-V9 rRNA (~121-130 base pairs, bp) and diat-rbcL (76 bp), targeting eukaryotes and diatoms, respectively. However, it remains unknown how 18S-V9 and diat-rbcL derived compositional profiles compare to metagenomic shotgun data, the preferred method for ancient DNA analyses as amplification biases are minimised. We extracted DNA from five Santa Barbara Basin sediment samples (up to ~11 000 years old) and applied both a metabarcoding (18S-V9 rRNA, diat-rbcL) and a metagenomic shotgun approach to (i) compare eukaryote, especially diatom, composition, and (ii) assess sequence length and database related biases. Eukaryote composition differed considerably between shotgun and metabarcoding data, which was related to differences in read lengths (~112 and ~161 bp, respectively), and overamplification of short reads in metabarcoding data. Diatom composition was influenced by reference bias that was exacerbated in metabarcoding data and characterised by increased representation of Chaetoceros, Thalassiosira and Pseudo-nitzschia. Our results are relevant to sedaDNA studies aiming to accurately characterise paleo-ecosystems from either metabarcoding or metagenomic data.
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- 2021
4. Measuring the efficiency of purging by non-random mating in human populations
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Laurent, Romain, primary, Gineau, Laure, additional, Utge, José, additional, Lafosse, Sophie, additional, Phoeung, Chan Leakhena, additional, Hegay, Tatyana, additional, Olaso, Robert, additional, Boland, Anne, additional, Deleuze, Jean-François, additional, Toupance, Bruno, additional, Heyer, Evelyne, additional, Leutenegger, Anne-Louise, additional, and Chaix, Raphaëlle, additional
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- 2024
- Full Text
- View/download PDF
5. Who are the elephants living in the hybridization zone? How genetics may guide conservation to better protect endangered elephants
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Bonnald, Julie, Utge, Jose, Kuhner, Mary K., Wasser, Samuel K., Asalu, Edward, Okimat, John Paul, and Krief, Sabrina
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- 2021
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6. The phylogeny and systematics of the Nassariidae revisited (Gastropoda, Buccinoidea)
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Galindo, Lee Ann, Puillandre, Nicolas, Utge, José, Lozouet, Pierre, and Bouchet, Philippe
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- 2016
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7. Past domestication of T. cacao in Central and Latin America revealed by paleogenomics and analysis of methylxanthines
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Lanaud, Claire, Vignes, Hélène, Utge, José, Valette, Gilles, Garcia Caputi, Mariella, Angarita, Natalia, Lanaud, Claire, Vignes, Hélène, Utge, José, Valette, Gilles, Garcia Caputi, Mariella, and Angarita, Natalia
- Abstract
Understanding the diversity of a species and its history, in order to better exploit it, is a challenge that breeders often face when creating new varieties adapted to the current environment. Many questions still remain about the first phases of cocoa domestication in Central and Latin America. Using a multidisciplinary approach, associating archaeologists with genomics and biochemistry scientists, we tried to retrace the history of the past domestication of cocoa trees, and their migrations in South America and Central America. Plant paleogenomics is a new field of research, that traces the evolution of cultivated plants in response to human domestication and natural selection since very ancient times. It is based on the analysis of ancient DNA (aDNA) from archaeological remains and can provide direct access to plant varieties consumed several thousand years ago. The oldest traces of cocoa consumption date back 5,500 years and have been identified in the southern Ecuadorian Amazon. New studies, reported in this paper, have been carried out from more than 300 archaeological samples collected mainly all along the Pacific coast of Ecuador and Colombia as well as in Central America and from diverse civilizations, the oldest of which dates back to more than 5000 years before our era. Analyzes have revealed traces of ancient cocoa DNA and methylxanthines (theobromine, theophylline and caffeine) in the ceramic residues of many pre-Columbian cultures. They show a wide use of cocoa throughout the Latin America continent and at very varied times which can go back more than 5000 years. The genetic origin of varieties consumed several thousand years ago could have sometimes been identified by comparison with a large collection of modern genetic resources representing the diversity of the T. cacao species. These results provide new keys to unraveling the past domestication of T. cacao in Latin and Central America.
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- 2023
8. Molecular phylogeny of the nutmeg shells (Neogastropoda, Cancellariidae)
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Modica, Maria Vittoria, Bouchet, Philippe, Cruaud, Corinne, Utge, José, and Oliverio, Marco
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- 2011
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9. The Palaeolithic site of Roc-en-Pail (Chalonnes-sur-Loire, Maine-et-Loire)
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Soriano, Sylvain, Ahmed-Delacroix, Nelson, Borvon, Aurélia, Chevrier, Benoît, David, Éva, Dessoles, Mélina, Elalouf, Jean-Marc, Faivre, Jean-Philippe, Forré, Philippe, Guérin, Guillaume, Lahaye, Christelle, Lebreton, Loïc, Lhomme, Vincent, Massoulié, Marine, Mellier, Benoît, Primault, Jérôme, Rasse, Michel, Sévêque, Noémie, Todisco, Dominique, Utge, José, Verna, Christine, and Voeltzel, Bénédicte
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Paléolithique supérieur ,Middle Paleolithic ,stratigraphie ,Western France ,stratigraphy ,excavation archives ,archives de fouille ,Pays de la Loire ,Paléolithique moyen ,Histoire de la Préhistoire ,France de l’Ouest ,Open-air settlement ,Upper Paleolithic ,habitat de plein air ,History of prehistory - Abstract
The paleolithic site at Roc-en-Pail was discovered by chance between 1870 and 1871, in the context of quarrying activities when Prehistoric Science was at its youth. Nevertheless the lithic industries were immediate linked to the Moustier type with reference to the pioneer work of É. Lartet and H. Christy. The site was only latter largely excavated by Dr Michel Gruet, in the 1940s and 1950s then in 1969. Excavations archives from Dr Gruet together with the large collection he recovered allowed us to emphasize the scientific value of the site and to design a new field project. We aim to establish the history of researches carried at the site and to draw a knowledge review as a starting point to renewed fieldwork. We will try to determine why this site is so weakly visible in the literature whereas a five meters thick sequence with rich faunal and lithic assemblages was described by Dr Gruet. We first emphasize the confusion occurring in the literature between the Roc-en-Pail paleolithic site itself and close paleontological sites, from karstic structures. Secondly, we discuss the presence of a rockshelter, now destroyed, at Roc-en-Pail as proposed by Dr Gruet. Finally, we propose a critical review of the stratigraphy based on the preliminary results from our 2014 to 2018 excavations to highlight the interest of the site for our knowledge of Middle Paleolithic period in Western-Central France. Résumé. Le site paléolithique de Roc-en-Pail a été découvert fortuitement entre 1870 et 1871, en marge de l’exploitation d’une carrière alors que la science préhistorique n’en est encore qu’à ses débuts. Néanmoins, dès sa découverte, les industries lithiques sont rapportées au type du Moustier, en référence aux travaux pionniers d’É. Lartet et H. Christy. Il faudra attendre les recherches du Dr Michel Gruet dans les années 1940-1950 puis en 1969, pour que de véritables fouilles soient entreprises sur le site. La documentation qu’il a laissée et l’imposante collection qu’il a recueillie nous ont permis de mesurer l’intérêt du site et de mettre en place un nouveau projet de recherches de terrain. Préalablement à ces nouvelles fouilles, l’objectif de cette contribution est de dresser l’historique des recherches et d’établir un état des connaissances. Nous tenterons de cerner les raisons pour lesquelles la visibilité de ce site dans la littérature est si faible alors que le Dr Gruet avait décrit une séquence de près de cinq mètres d’épaisseur riche en vestiges lithiques et fauniques. Nous mettrons d’abord en évidence les confusions faites jusqu’à présent dans la littérature entre les occupations paléolithiques de Roc-en-Pail et des sites paléontologiques à indices d’occupation en contexte karstique. Ensuite, nous discuterons l’existence à Roc-en-Pail d’un abri-sous-roche, désormais détruit ainsi que proposé par le Dr Gruet. Enfin, les résultats préliminaires des nouvelles fouilles nous amènent à réviser les interprétations du Dr Gruet quant à l’organisation des dépôts et à la séquence archéologique afin de souligner son potentiel pour la connaissance du Paléolithique moyen dans le centre-ouest de la France.
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- 2022
10. Le site paléolithique de Roc-en-Pail (Chalonnes-sur-Loire, Maine-et-Loire) : état des connaissances 150 ans après sa découverte
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Soriano, Sylvain, Ahmed-Delacroix, Nelson, Borvon, Aurélia, Chevrier, Benoît, David, Éva, Dessoles, Mélina, Elalouf, Jean-Marc, Faivre, Jean-Philippe, Forré, Philippe, Guérin, Guillaume, Lahaye, Christelle, Lebreton, Loïc, Lhomme, Vincent, Massoulié, Marine, Mellier, Benoît, Primault, Jérôme, Rasse, Michel, Sévêque, Noémie, Todisco, Dominique, Utge, José, Verna, Christine, Voeltzel, Bénédicte, Archéologies et Sciences de l'Antiquité (ArScAn), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), Anthropologie des techniques, des espaces et des territoires au Pliocène et au Pléistocène (AnTET), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Archéologies environnementales, Université de Genève = University of Geneva (UNIGE), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), De la Préhistoire à l'Actuel : Culture, Environnement et Anthropologie (PACEA), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut national de recherches archéologiques préventives (Inrap), Géosciences Rennes (GR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherches sur les Archéomatériaux (IRAMAT), Université de Technologie de Belfort-Montbeliard (UTBM)-Université d'Orléans (UO)-Université Bordeaux Montaigne (UBM)-Centre National de la Recherche Scientifique (CNRS), Histoire naturelle de l'Homme préhistorique (HNHP), Muséum national d'Histoire naturelle (MNHN)-Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS), Muséum des Sciences naturelles [Angers], DRAC Nouvelle-Aquitaine, Ministère de la Culture (MC), ARCHEORIENT - Environnements et sociétés de l'Orient ancien (Archéorient), Université Lumière - Lyon 2 (UL2)-Centre National de la Recherche Scientifique (CNRS), GeoArchEon SARL, Identité et Différenciation de l’Espace, de l’Environnement et des Sociétés (IDEES), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université Le Havre Normandie (ULH), Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire Homme et Société (IRIHS), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU), Éco-Anthropologie (EA), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Institut national de recherches archéologiques préventives (Inrap)-Centre National de la Recherche Scientifique (CNRS), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Institut national de recherches archéologiques préventives (Inrap)-Centre National de la Recherche Scientifique (CNRS)-Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris 8 Vincennes-Saint-Denis (UP8)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Institut national de recherches archéologiques préventives (Inrap)-Centre National de la Recherche Scientifique (CNRS), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Université de Technologie de Belfort-Montbeliard (UTBM)-Université d'Orléans (UO)-Université Bordeaux Montaigne-Centre National de la Recherche Scientifique (CNRS), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Université de Genève (UNIGE), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire Homme et Société (IRIHS), Normandie Université (NU)-Université de Caen Normandie (UNICAEN), and Éco-Anthropologie (EAE)
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Paléolithique supérieur ,Archeology ,Middle Paleolithic ,[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and Prehistory ,stratigraphie ,Western France ,stratigraphy ,excavation archives ,Pays de la Loire ,archives de fouille ,Paléolithique moyen ,Histoire de la Préhistoire ,France de l’Ouest ,Open-air settlement ,Upper Paleolithic ,habitat de plein air ,History of prehistory - Abstract
International audience; The paleolithic site at Roc-en-Pail was discovered by chance between 1870 and 1871, in the context of quarrying activities when Prehistoric Science was at its youth. Nevertheless the lithic industries were immediate linked to the Moustier type with reference to the pioneer work of É. Lartet and H. Christy. The site was only latter largely excavated by Dr Michel Gruet, in the 1940s and 1950s then in 1969. Excavations archives from Dr Gruet together with the large collection he recovered allowed us to emphasize the scientific value of the site and to design a new field project. We aim to establish the history of researches carried at the site and to draw a knowledge review as a starting point to renewed fieldwork. We will try to determine why this site is so weakly visible in the literature whereas a five meters thick sequence with rich faunal and lithic assemblages was described by Dr Gruet. We first emphasize the confusion occurring in the literature between the Roc-en-Pail paleolithic site itself and close paleontological sites, from karstic structures. Secondly, we discuss the presence of a rockshelter, now destroyed, at Roc-en-Pail as proposed by Dr Gruet. Finally, we propose a critical review of the stratigraphy based on the preliminary results from our 2014 to 2018 excavations to highlight the interest of the site for our knowledge of Middle Paleolithic period in Western-Central France.; Le site paléolithique de Roc-en-Pail a été découvert fortuitement entre 1870 et 1871, en marge de l’exploitation d’une carrière alors que la science préhistorique n’en est encore qu’à ses débuts. Néanmoins, dès sa découverte, les industries lithiques sont rapportées au type du Moustier, en référence aux travaux pionniers d’É. Lartet et H. Christy. Il faudra attendre les recherches du Dr Michel Gruet dans les années 1940-1950 puis en 1969, pour que de véritables fouilles soient entreprises sur le site. La documentation qu’il a laissée et l’imposante collection qu’il a recueillie nous ont permis de mesurer l’intérêt du site et de mettre en place un nouveau projet de recherches de terrain. Préalablement à ces nouvelles fouilles, l’objectif de cette contribution est de dresser l’historique des recherches et d’établir un état des connaissances. Nous tenterons de cerner les raisons pour lesquelles la visibilité de ce site dans la littérature est si faible alors que le Dr Gruet avait décrit une séquence de près de cinq mètres d’épaisseur riche en vestiges lithiques et fauniques. Nous mettrons d’abord en évidence les confusions faites jusqu’à présent dans la littérature entre les occupations paléolithiques de Roc-en-Pail et des sites paléontologiques à indices d’occupation en contexte karstique. Ensuite, nous discuterons l’existence à Roc-en-Pail d’un abri-sous-roche, désormais détruit ainsi que proposé par le Dr Gruet. Enfin, les résultats préliminaires des nouvelles fouilles nous amènent à réviser les interprétations du Dr Gruet quant à l’organisation des dépôts et à la séquence archéologique afin de souligner son potentiel pour la connaissance du Paléolithique moyen dans le centre-ouest de la France.
- Published
- 2021
- Full Text
- View/download PDF
11. The Palaeolithic site of Roc-en-Pail (Chalonnes-sur-Loire, Maine-et-Loire)
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Soriano, Sylvain, primary, Ahmed-Delacroix, Nelson, additional, Borvon, Aurélia, additional, Chevrier, Benoît, additional, David, Éva, additional, Dessoles, Mélina, additional, Elalouf, Jean-Marc, additional, Faivre, Jean-Philippe, additional, Forre, Philippe, additional, Guérin, Guillaume, additional, Lahaye, Christelle, additional, Lebreton, Loïc, additional, Lhomme, Vincent, additional, Massoulié, Marine, additional, Mellier, Benoît, additional, Primault, Jérôme, additional, Rasse, Michel, additional, Sévêque, Noémie, additional, Todisco, Dominique, additional, Utge, José, additional, Verna, Christine, additional, and Voeltzel, Bénédicte, additional
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- 2021
- Full Text
- View/download PDF
12. A mobile laboratory for ancient DNA analysis
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Utge, José, primary, Sévêque, Noémie, additional, Lartigot-Campin, Anne-Sophie, additional, Testu, Agnès, additional, Moigne, Anne-Marie, additional, Vézian, Régis, additional, Maksud, Frédéric, additional, Begouën, Robert, additional, Verna, Christine, additional, Soriano, Sylvain, additional, and Elalouf, Jean-Marc, additional
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- 2020
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13. Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda)
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Castelin, Magalie, primary, Williams, Suzanne T., additional, Buge, Barbara, additional, Maestrati, Philippe, additional, Lambourdière, Josie, additional, Ozawa, Tomowo, additional, Utge, José, additional, Couloux, Arnaud, additional, Alf, Axel, additional, and Samadi, Sarah, additional
- Published
- 2017
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14. Perotrochus pseudogranulosus Anseeuw, Puillandre, Utge & Bouchet, 2015, sp. nov
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Anseeuw, Patrick, Puillandre, Nicolas, Utge, José, and Bouchet, Philippe
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Pleurotomariida ,Perotrochus ,Pleurotomariidae ,Mollusca ,Gastropoda ,Animalia ,Biodiversity ,Taxonomy ,Perotrochus pseudogranulosus - Abstract
Perotrochus pseudogranulosus sp. nov. urn:lsid:zoobank.org:act: CE972B51-FB50-4C06-B1B2-DD01A6BC737D Figs 1D, 5 A–F, 6A–J Etymology The specific epithet emphasizes the beaded spiral sculpture of the species. Material examined 40 lots comprising 84 specimens (Table 1). Type material Holotype NEW CALEDONIA: a sequenced specimen, MNHN-IM-2009-7495. Paratypes NEW CALEDONIA: MNHN-IM-2007-32058 (Fig. 6 A–B); MNHN-IM-2007-32066 (Fig. 6 C–D); MNHN-IM-2009-7485 (Fig. 6 E–F); MNHN-IM-2009-7491 (Fig. 6 G–H); MNHN-IM-2009-7493 (Fig. 6 I–J). Type locality Coral Sea, Capel Bank, 24°45’ S, 159°42’ E, 348–354 m (EBISCO sta. CP2494). Description (holotype) Shell of medium size, light, thin, general profile rather conical, with weakly convex to straight-sided whorls with weakly impressed suture, diameter significantly exceeding height (H/D = 0.78), numbering 8 teleoconch whorls, with a mean spire angle of 80°. Protoconch ivory white, depressed. Dominant sculpture of teleoconch consisting of numerous lightly beaded spiral cords, with microsculptural pattern of fine radiating threads, giving the entire whorl surface a shiny metallic luster. On last whorl, 11 spiral cords above selenizone, 7 below and 3 major cords in the selenizone itself. Slit long, about 1/5 th the circumference of the last whorl, situated below midwhorl, and rather narrow. Aperture depressed. Basal disc rather flattened, with angular edge, with a relatively narrow (extending over 30% of base diameter) light nacreous callus pad which is finely ridged radially and ends in a raised porcellaneous edge. Inside the aperture inner slit lips nearly completely covered by nacre, leaving a narrow area (approximately 15% of the surface) parallel to the inner slit lips uncovered, showing only porcellaneous layer. Background colour yellowish beige, with intense reddish crimson colour markings arranged in very regular checkerboard pattern, overall reinforcing color intensity; basal disc showing some contrasting reddish crimson flammulations, particularly visible at its periphery, and more yellowish tan towards the center. Operculum small, multispiral, circular, light yellowish (fallen off/missing in holotype). Measurements Maximum basal diameter (D) 64.9 mm, minimum diameter 59.1 mm. Height (H) 50.7 mm. H/D = 0.78. Depth of slit at upper margin 42.1 mm, depth of slit at lower margin 26.9 mm. Slit width 3.1 mm. Slit length: 1/5.64 th of circumference of last whorl. Weight of empty shell 42.6 g. Discussion Perotrochus pseudogranulosus sp. nov. most closely resembles P. caledonicus (Fig. 7) at first glance, but is distinguished by its more conical and higher shell, a more flattened basal disc profile and a more intense and regular checkerboard colour pattern and more lustrous shell surface. It differs from P. wareni sp. nov. by its weakly beaded spiral cords with a microsculpture of fine radiating threads, its more intensely marked checkerboard colour pattern, with metallic luster, a much longer slit and a much smaller callus pad area on the basal disc. Finally, it differs from P. deforgesi (Fig. 7), the only other species occurring in the Coral Sea, by its general outline which is distinctly higher conical, its thin shell, its more intense checkerboard colour markings, its less granular spiral cords and smaller callus pad coverage on the basal disc. Some specimens of P. pseudogranulosus sp. nov. have over the years turned up in the shell trade as “ P. cfr. caledonicus ”, supposedly originating from NW Australia or even from the South China Sea (Anseeuw & Goto 1996). However, based on the lack of precise and trustworthy locality data, the lack of more recent confirmation of those alleged findings and, most of all, the general unavailability of such material for study, we reject these localities as intentionally or unintentionally unproven and unverifiable.
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- 2015
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15. Perotrochus wareni Anseeuw, Puillandre, Utge & Bouchet, 2015, sp. nov
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Anseeuw, Patrick, Puillandre, Nicolas, Utge, José, and Bouchet, Philippe
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Pleurotomariida ,Perotrochus ,Pleurotomariidae ,Mollusca ,Gastropoda ,Animalia ,Perotrochus wareni ,Biodiversity ,Taxonomy - Abstract
Perotrochus wareni sp. nov. urn:lsid:zoobank.org:act: 51E7B304-66D2-4AE6-84C0-3A4427203065 Figs 1A, 3 A–F, 4A–J Etymology This new species is named in honor of Dr Anders Warén of Naturhistoriska Riksmuseet, Stockholm, in recognition of his lifetime interest in deep-sea exploration and his participation in expeditions around New Caledonia and elsewhere in the South Pacific, many of which yielded specimens used in this paper. Material examined 73 lots comprising 176 specimens (Table 1). Type material Holotype NEW CALEDONIA: a sequenced specimen, MNHN-IM-2007-36460. Paratypes NEW CALEDONIA: MNHN-IM-2007-34680 (Fig. 4 A–B); MNHN-IM-2007-34684 (Fig. 4 C–D); MNHN-IM-2007-34685 (Fig. 4 E–F); MNHN-IM-2007-36456 (Fig. 4 G–H); MNHN-IM-2007-36461 (Fig. 4 I–J). Type locality Norfolk Ridge, Munida Bank, 22°59’ S, 168°21’ E, 320–390 m (TERRASSES sta. DW3101). Description (holotype) Shell of medium size, solid, thick, general profile rather conical, with weakly convex, rather straightsided whorls, with a diameter a little smaller than its height (H/D ratio = 1.08), numbering 10.5 teleoconch whorls, with a mean spire angle of 65° with weakly impressed suture, whorl surface dull. Protoconch glassy, rather obtusely depressed. Teleoconch with heavily beaded spiral cords very early on. Dominant teleoconch sculpture consisting of finely but strongly beaded spiral cords, intersecting less marked axial riblets. Periphery of basal disc crenulated due to a strongly marked spiral cord running at edge of disc. On last whorl, 13 spiral cords above selenizone, 4 spiral cords below, and 2 major cords in the selenizone itself. Slit short, about 1/7 th the circumference of last whorl, situated below midwhorl, and very narrow. Aperture rectangularly depressed. Basal disc rather flat, depressed in its center and sharply edged at its periphery, with a very wide (extending over 40% of base diameter) callus pad which is finely ridged radially. Inside aperture, inner slit lips only partially covered by nacre, leaving a V-shaped area uncovered (approximately 25% of surface of inner slit lip extremity in aperture uncovered by nacre, showing only porcellaneous layer). Nacre coverage thick, no surface sculpture showing through it. Background color yellowish beige, with some faint axial orange-red flammulations, not really arranged into a distinct checker-board pattern; basal disc of same colour, with some faint orange axial flammulation reaching only to basal disc edge. Operculum small, multispiral, circular, light yellowish. Measurements Maximum basal diameter (D) 46.75 mm, minimum diameter 43.9 mm. Height (H) 50.27 mm. H/D = 1.08. Length of slit at upper margin 26.7 mm, at lower margin 16.2 mm. Slit width: 1.6 mm; slit length: 1/6.51 th of circumference of last whorl. Weight of empty shell 26.3 g. Discussion One of the distinctive shell characters separating Perotrochus wareni sp. nov. from P. caledonicus is the well-marked beading on the teleoconch spiral cords, visible also on the earlier whorls, giving it at first glance its typical pustulose or granular appearance. The intensity of the beading varies between specimens, leading to “heavily beaded”/“very pustulose” specimens and to “weakly beaded” / “light pustulose” specimens, with all different intergrades. This variability may reflect environmental conditions, as the beading intensity is generally stable within one haul / lot and varies between hauls / lots. Leaving aside beading intensity, shell characters are quite stable in P. wareni sp. nov. The general profile of the teleoconch, the outline of the aperture, the selenizone and slit width, and the extension of the callus on the basal disc, all show consistent differences between P. wareni sp. nov., P. caledonicus and P. pseudogranulosus sp. nov. (Table 2). Perotrochus wareni sp. nov. also bears some resemblance to P. gotoi Anseeuw, 1990, and, in fact, a specimen of the granulated P. “ cfr. caledonicus ” ([i.e., P. wareni sp. nov.) had been used for comparison at the time of its original description (Anseeuw 1990). Perotrochus wareni sp. nov. can be separated from P. gotoi by its somewhat shorter slit length (1/6.51 th of basal diameter in wareni sp. nov. vs 1/6 th in gotoi), the larger number of spiral cords on adult specimens, the more irregularly banded checkerboard colour pattern in the area below the selenizone, the heavier and thicker shell (around 60–70% heavier at comparable shell sizes), the less extensive area uncovered by the nacreous layer inside the apertural inner slit lip extremities, and the umbilical callus occupying a much larger surface on the basal disc (45% in P. wareni sp. nov. vs 28% in P. gotoi). The two species, however, share (also with Mikadotrochus salmianus (Rolle, 1899) the nacreous coverage of the inner slit lips in the aperture, a feature that separates them from Perotrochus caledonicus s.s. and P. pseudogranulosus sp. nov. (Table 2, Figs 3–4, 7). Other features, like a deeper, more intense colour pattern on the teleoconch and basal disc, fine microgranulosity on the spiral cords, a thin, light shell, and a more lustrous shell surface, further separate Perotrochus pseudogranulosus sp. nov. from P. wareni sp. nov. (Table 2, Figs 3–6).
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- 2015
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16. Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda)
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Castelin, Magalie, Williams, Suzanne T., Buge, Barbara, Maestrati, Philippe, Lambourdière, Josie, Ozawa, Tomowo, Utge, José, Couloux, Arnaud, Alf, Axel, Samadi, Sarah, Castelin, Magalie, Williams, Suzanne T., Buge, Barbara, Maestrati, Philippe, Lambourdière, Josie, Ozawa, Tomowo, Utge, José, Couloux, Arnaud, Alf, Axel, and Samadi, Sarah
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In shelled molluscs, assigning valid species names to independent evolutionary lineages can be a difficult task. Most original descriptions are based on empty shells and the high levels of variation in shape, color and pattern in some groups can make the shell a poor proxy for species-level identification. The deep-sea gastropod turbinid genus Bolma is one such example, where species-level identification based on shell characters alone is challenging. Here, we show that in Bolma both traditional and molecular taxonomic treatments are associated with a number of pitfalls that can lead to biased inferences about species diversity. Challenges derive from the few phylogenetically informative characters of shells, insufficient information provided in original descriptions and sampling artefacts, which at the molecular level in spatially fragmented organisms can blur distinctions between genetically divergent populations and separate species. Based on a comprehensive dataset combining molecular, morphological and distributional data, this study identified several cases of shell-morphological plasticity and convergence. Results also suggest that what was thought to be a set of distinct, range-restricted species corresponds instead to a smaller number of more widespread species. Overall, using an appropriate sampling design, including type localities, allowed us to assign available names to evolutionarily significant units.
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- 2017
17. Murina lorelieae subsp. ngoclinhensis Tu and Hassanin 2015, ssp. nov
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Tu, Vuong Tan, Cornette, Raphaël, Utge, José, and Hassanin, Alexandre
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Murina lorelieae ngoclinhensis tu and hassanin ,Chiroptera ,Mammalia ,Animalia ,Murina ,Biodiversity ,Vespertilionidae ,Chordata ,Taxonomy ,Murina lorelieae - Abstract
Murina lorelieae ngoclinhensis Tu and Hassanin, ssp. nov. Holotype MNHN 2013-1078 (Field number VN 1563, tissue code VN 11- 1220), adult male, in alcohol skull removed, collected 3 December 2011 by Alexandre Hassanin and Vuong Tan Tu. Mass: 5 g. Measurements (in mm) for the holotype are as follows: FA: 33.00; Tib: 19.00; Ear: 14.00; Tragus: 8.08; 3 DM: 30.19; 4 DM: 29.03; 5 DM: 29.07; 3D1P: 14.17; 3D2P: 12.81; 4D1P: 10.48; 4D2P: 9.04; 5D1P: 11.07; 5D2P: 10.80; GLS: 16.23; CIL: 14.57; ZB: 8.83; MB: 7.65; BBC: 7.40; POC: 4.30; IC: 5.20; CM 3: 5.34; M 2 M 2: 5.50; CC:3.87; ML: 10.84; CM 3: 5.64; HCP: 4.23. The sequence of the mitochondrial gene COI has been deposited in the EMBL / GenBank / DDBJ nucleotide databases with accession number KF772780. Type locality Ngoc Linh Nature Reserve, Kon Tum province, Vietnam. 15°03.884 N, 107°49.888 E, elevation 1682 m a.s.l. Paratypes – IEBR-Tu281111.1 (Field number VN 1504 – tissue code VN 11-1161), Ngoc Linh Nature Reserve, Kon Tum, Vietnam, 15°04.766 N; 107°49.833 E, elevation 1117 m a.s.l., adult female, in alcohol skull removed, collected 28 November 2011 by Alexandre Hassanin and Vuong Tan Tu, accession number of COI sequence: KF772779. – MNHN 2013-1079 (Field number VN1566, tissue code VN 11-1223), Ngoc Linh Nature Reserve, Kon Tum, Vietnam, 15°03.884 N, 107°49.888 E, 1682 m a.s.l., adult female, in alcohol skull removed, collected 3 December 2011 by Alexandre Hassanin and Vuong Tan Tu, accession number of COI sequence: KF772781. Etymology The name “ ngoclinhensis ” is derived from the Mount Ngoc Linh of the Ngoc Linh Nature Reserve, Kon Tum province, Vietnam, from which all specimens of this subspecies were collected. Diagnosis Murina lorelieae ngoclinhensis is externally similar to the typical form, M. l. lorelieae, but significantly larger in body size (Table 1). In addition, the skull shape of the new subspecies is elongate and gradually rises from the rostrum to the forehead (Figure 3), while that of the holotype is characterized by an abruptly rising profile. aThe tail of this specimen is unusually shorter due to either congenital or accidental reasons. Description This is a small bat species, generally similar to Murina lorelieae lorelieae (Table 1). The pelage is characterized by long shiny hairs (8 mm ventrally and 13–15 mm dorsally), with distinct colorations on dorsal and ventral surfaces, copper reddish-brown and dirty white, respectively. Dorsal hairs are tricolored: dark gray basally, pale in the middle and reddish brown at the tip. Ventral hairs are bicolored: dark gray in about two thirds of the length and whitish at the tip (Figure 5). The skull is domed. The lateral profile of the anterior part of the skull gradually rises from the rostrum to the forehead (Figure 3). The sagittal crest is lacking; the lambdoid crests are visible. The maxillary toothrows are convergent anteriorly (Figure 3). The dentition is quite robust. The second upper incisor (I 3) is situated posterior to the first (I 2), and I 2 is visible laterally. I 2 and I 3 are subequal in height (Figure 4) and are much less than half the height of the upper canine (C 1). Upper (C 1) and lower (C 1) canines are well developed, exceed the height and subequal the basal areas of the corresponding second premolar (P 4 and P 4). The crown area and the height of the first upper premolar (P 2) are two thirds more than those of P 4 (Figures 3 and 4). The first (M 1) and second (M 2) upper molars have well-developed mesostyles and curved labial (outer) faces (Figure 4). The paracone, metacone, and protocone of the first (M 1) and second (M 2) upper molars are distinctly defined., Published as part of Tu, Vuong Tan, Cornette, Raphaël, Utge, José & Hassanin, Alexandre, 2015, First records of Murina lorelieae (Chiroptera: Vespertilionidae) from Vietnam, pp. 201-213 in Mammalia (Warsaw, Poland) (Warsaw, Poland) 79 (2) on pages 209-210, DOI: 10.1515/mammalia-2013-0101, http://zenodo.org/record/7837550
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- 2014
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18. Perotrochus caledonicus (Gastropoda: Pleurotomariidae) revisited: descriptions of new species from the South-West Pacific
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Anseeuw, Patrick, Puillandre, Nicolas, Utge, José, Bouchet, Philippe, Anseeuw, Patrick, Puillandre, Nicolas, Utge, José, and Bouchet, Philippe
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Morphological (shell) and molecular examination of a large suite of specimens of pleurotomariids from around New Caledonia and the Coral Sea reveals the existence of four species in the complex of Perotrochus caledonicus: Perotrochus deforgesi Métivier, 1990 and P. pseudogranulosus sp. nov. live allopatrically on the plateaus and guyots of the Coral Sea; Perotrochus caledonicus Bouchet & Métivier, 1982 and Perotrochus wareni sp. nov. live sympatrically - but essentially not syntopically - on the slopes of New Caledonia, Norfolk Ridge and the Loyalty Ridge. All species live in the 300–500 m interval, and together form a significant component of the mollusc fauna living on hard bottoms in the SW Pacific, with individual dredge hauls containing up to 25 specimens of Perotrochus.
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- 2015
19. Perotrochus caledonicus (Gastropoda: Pleurotomariidae) revisited: descriptions of new species from the South-West Pacific
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Anseeuw, Patrick, primary, Puillandre, Nicolas, additional, Utge, José, additional, and Bouchet, Philippe, additional
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- 2015
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20. Microsatellite markers for the yam bean Pachyrhizus (Fabaceae)
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Delêtre, Marc, Soengas, Beatriz, Utge, José, Lambourdière, Josie, Sørensen, Marten, Delêtre, Marc, Soengas, Beatriz, Utge, José, Lambourdière, Josie, and Sørensen, Marten
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- 2013
21. First records of Murina lorelieae (Chiroptera: Vespertilionidae) from Vietnam
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Tu, Vuong Tan, primary, Cornette, Raphaël, additional, Utge, José, additional, and Hassanin, Alexandre, additional
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- 2014
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22. Microsatellite Markers for the Yam Bean Pachyrhizus (Fabaceae)
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Delêtre, Marc, primary, Soengas, Beatriz, additional, Utge, José, additional, Lambourdière, Josie, additional, and Sørensen, Marten, additional
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- 2013
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23. An optimised protocol for barcoding museum collections of decapod crustaceans: a case-study for a 10 - 40-years-old collection
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Zuccon, Dario, primary, Brisset, Julien, additional, Corbari, Laure, additional, Puillandre, Nicolas, additional, Utge, José, additional, and Samadi, Sarah, additional
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- 2012
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24. First records of Murina lorelieae (Chiroptera: Vespertilionidae) from Vietnam.
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Tu, Vuong Tan, Cornette, Raphaël, Utge, José, and Hassanin, Alexandre
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VESPERTILIONIDAE ,BAT classification ,ZOOLOGICAL specimens ,MITOCHONDRIA ,ANIMAL morphology - Abstract
In 2011, three specimens from an unknown species of tube-nosed bat (genus Murina) were collected in montane moist forest at altitudes between 1117 and 1682 m in the Ngoc Linh Nature Reserve of Vietnam. We sequenced the mitochondrial COI gene from Ngoc Linh bats and performed comparisons with Murina sequences available in the nucleotide databases. The results suggested that the three unidentified specimens belong to Murina lorelieae, a species recently described from a single specimen collected in southern China. Nucleotide distances between specimens from Ngoc Linh and southern China are exceptionally low for M. lorelieae (1.25%) in comparison with three other Murina species, i.e., Murina cyclotis, Murina feae, and Murina huttoni (3.9-5.5%). We suggest that M. lorelieae is adapted to montane forests, which may have facilitated long-distance dispersal events between southern China and Vietnam during glacial periods of the Pleistocene. Morphological comparisons based on body-size measurements and geometric morphometric analyses of the skulls showed differences between Vietnamese specimens and the Chinese holotype of M. lorelieae. We proposed that the Vietnamese specimens belong to a distinct subspecies, M. lorelieae ngoclinhensis. [ABSTRACT FROM AUTHOR]
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- 2015
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25. État des connaissances 150 ans après sa découverte
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Soriano, Sylvain, Ahmed-Delacroix, Nelson, Borvon, Aurélia, Chevrier, Benoît, David, Éva, Dessoles, Mélina, Elalouf, Jean-Marc, Faivre, Jean-Philippe, Forré, Philippe, Guérin, Guillaume, Lahaye, Christelle, Lebreton, Loïc, Lhomme, Vincent, Massoulié, Marine, Mellier, Benoît, Primault, Jérôme, Rasse, Michel, Sévêque, Noémie, Todisco, Dominique, Utge, José, Verna, Christine, Voeltzel, Bénédicte, Archéologies et Sciences de l'Antiquité (ArScAn), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), Anthropologie des techniques, des espaces et des territoires au Pliocène et au Pléistocène (AnTET), Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-Université Paris 1 Panthéon-Sorbonne (UP1)-Université Paris Nanterre (UPN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Université de Genève (UNIGE), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), De la Préhistoire à l'Actuel : Culture, Environnement et Anthropologie (PACEA), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut national de recherches archéologiques préventives (Inrap), Géosciences Rennes (GR), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherches sur les Archéomatériaux (IRAMAT), Université d'Orléans (UO)-Centre National de la Recherche Scientifique (CNRS)-Université Bordeaux Montaigne-Université de Technologie de Belfort-Montbeliard (UTBM), Histoire naturelle de l'Homme préhistorique (HNHP), Muséum national d'Histoire naturelle (MNHN)-Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS), Muséum des Sciences naturelles [Angers], DRAC Nouvelle-Aquitaine, Ministère de la Culture (MC), ARCHEORIENT - Environnements et sociétés de l'Orient ancien (Archéorient), Université Lumière - Lyon 2 (UL2)-Centre National de la Recherche Scientifique (CNRS), GeoArchEon SARL, Identités et Différenciation de l'Environnement des Espaces et des Sociétés (IDEES), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Université Le Havre Normandie (ULH), Normandie Université (NU)-Institut de Recherche Interdisciplinaire Homme et Société (IRIHS), Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS), Éco-Anthropologie (EAE), and Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)
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Paléolithique supérieur ,Middle Paleolithic ,stratigraphie ,Western France ,stratigraphy ,excavation archives ,Pays de la Loire ,archives de fouille ,Paléolithique moyen ,Histoire de la Préhistoire ,[SHS]Humanities and Social Sciences ,France de l’Ouest ,Open-air settlement ,Upper Paleolithic ,habitat de plein air ,History of prehistory - Abstract
International audience; The paleolithic site at Roc-en-Pail was discovered by chance between 1870 and 1871, in the context of quarrying activities when Prehistoric Science was at its youth. Nevertheless the lithic industries were immediate linked to the Moustier type with reference to the pioneer work of É. Lartet and H. Christy. The site was only latter largely excavated by Dr Michel Gruet, in the 1940s and 1950s then in 1969. Excavations archives from Dr Gruet together with the large collection he recovered allowed us to emphasize the scientific value of the site and to design a new field project. We aim to establish the history of researches carried at the site and to draw a knowledge review as a starting point to renewed fieldwork. We will try to determine why this site is so weakly visible in the literature whereas a five meters thick sequence with rich faunal and lithic assemblages was described by Dr Gruet. We first emphasize the confusion occurring in the literature between the Roc-en-Pail paleolithic site itself and close paleontological sites, from karstic structures. Secondly, we discuss the presence of a rockshelter, now destroyed, at Roc-en-Pail as proposed by Dr Gruet. Finally, we propose a critical review of the stratigraphy based on the preliminary results from our 2014 to 2018 excavations to highlight the interest of the site for our knowledge of Middle Paleolithic period in Western-Central France.; Le site paléolithique de Roc-en-Pail a été découvert fortuitement entre 1870 et 1871, en marge de l’exploitation d’une carrière alors que la science préhistorique n’en est encore qu’à ses débuts. Néanmoins, dès sa découverte, les industries lithiques sont rapportées au type du Moustier, en référence aux travaux pionniers d’É. Lartet et H. Christy. Il faudra attendre les recherches du Dr Michel Gruet dans les années 1940-1950 puis en 1969, pour que de véritables fouilles soient entreprises sur le site. La documentation qu’il a laissée et l’imposante collection qu’il a recueillie nous ont permis de mesurer l’intérêt du site et de mettre en place un nouveau projet de recherches de terrain. Préalablement à ces nouvelles fouilles, l’objectif de cette contribution est de dresser l’historique des recherches et d’établir un état des connaissances. Nous tenterons de cerner les raisons pour lesquelles la visibilité de ce site dans la littérature est si faible alors que le Dr Gruet avait décrit une séquence de près de cinq mètres d’épaisseur riche en vestiges lithiques et fauniques. Nous mettrons d’abord en évidence les confusions faites jusqu’à présent dans la littérature entre les occupations paléolithiques de Roc-en-Pail et des sites paléontologiques à indices d’occupation en contexte karstique. Ensuite, nous discuterons l’existence à Roc-en-Pail d’un abri-sous-roche, désormais détruit ainsi que proposé par le Dr Gruet. Enfin, les résultats préliminaires des nouvelles fouilles nous amènent à réviser les interprétations du Dr Gruet quant à l’organisation des dépôts et à la séquence archéologique afin de souligner son potentiel pour la connaissance du Paléolithique moyen dans le centre-ouest de la France.
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