Search

The goal of the processing industry, trade and consumers is to get eco-labelled freshwater fish products from sustainable fisheries into the market as soon as possible. The fourth largest natural lake system in Europe, the Saimaa lake system supports a fishery for vendace (Coregonus albula). Certification of the fishery requires an understanding of population structure to help determine the number and spatial extent of management units. In this study, we analysed the genetic diversity of local vendace populations in the Saimaa lake system and aimed to identify the conservation and management units of vendace. Within the Saimaa, the genetic divergence between local populations of vendace was weak and their genetic divergence did not follow an isolation by geographic distance pattern. Vendace has potential to disperse effectively within and between local populations in different lake basins. Even if we observed subtle genetic divergence within our study systems, available information showed no significant evidence that the local populations had unique evolutionarily significant traits. The local populations of the Saimaa lake system seem to have similar life history and morphological traits as in the whole Central Finland lake district. The conservation of genetic diversity seemed not to require basin-specific actions and we conclude that management of local vendace populations of Saimaa as one management unit is advisable. peerReviewed

Senescence is often described as an age-dependent increase in natural mortality (known as actuarial senescence) and an age-dependent decrease in fecundity (known as reproductive senescence), and its role in nature is still poorly understood. Based on empirical estimates of reproductive and actuarial senescence, we used mathematical simulations to explore how senescence affects the population dynamics of Coregonus albula, a small, schooling salmonid fish. Using an empirically based eco-evolutionary model, we investigated how the presence or absence of senescence affects the eco-evolutionary dynamics of a fish population during pristine, intensive harvest, and recovery phases. Our simulation results showed that the presence or absence of senescence affected how the population responded to the selection regime. At an individual level, gillnetting caused a larger decline in asymptotic length when senescence was present, compared to the nonsenescent population, and the opposite occurred when fishing was done by trawling. This change was accompanied by evolution toward younger age at maturity. At the population level, the change in biomass and number of fish in response to different fishery size-selection patterns depended on the presence or absence of senescence. Since most life-history and fisheries models ignore senescence, they may be over-estimating reproductive capacity and under-estimating natural mortality. Our results highlight the need to understand the combined effects of life-history characters such as senescence and fisheries selection regime to ensure the successful management of our natural resources. peerReviewed

The ability of a population to recover from disturbances is fundamental for its persistence. Impaired population recovery might be associated with a demographic Allee effect. Immigration from adjacent populations could accelerate the recovery not only by promoting population growth beyond the Allee effect threshold but also by bringing in advantageous genotypes. We explore the nature and role of ecological and evolutionary rescue in an Atlantic cod (Gadus morhua Gadidae) population fished below its Allee effect threshold. We utilize an eco-evolutionary model and simulate scenarios, where the target population evolves in response to selective fishing and sample immigrants from (a) a source population similarly adapted to fishing (post-fishing genotypes) or (b) an unexploited source population with natural genetic and phenotypic diversity (pre-fishing genotypes). Immigration of pre-fishing genotypes enhances the recovery due to the larger body sizes and the flow of associated genes. Post-fishing immigrants can also promote the population abundance recovery, but they increase uncertainty about recovery times as compared to pre-fishing immigrants and do not promote evolutionary recovery. Our results stress the importance of maintaining genetic and phenotypic diversity and suggest that marine protected areas can serve as an important source of immigrants to promote both the demographic and evolutionary recovery of exploited populations. peerReviewed

In fisheries worldwide, larger fish are subjected to substantially greater fishing mortality than smaller fish. Body length and behavioral traits are often correlated, such that fisheries-induced changes in either behaviour or morphology can also alter other traits as result of direct or indirect selection. Consistent behavioral differences among individuals, known as personality traits, provide the proximate framework by which selection can act; however, empirical evidence regarding how size-selective harvesting alters mean personality traits in exploited stocks is scarce. We examined three experimental lines of zebrafish (Danio rerio) that were exposed to positive, negative or random size-selective harvest over five generations to investigate whether simulated fishing changed the mean personality of the survivors five generations after harvesting was halted. We found that females mean boldness (defined as risk-taking tendency), activity and sociability were significantly altered relative to a randomly harvested line; however, harvest-induced changes in personality were only detected in the negatively size-selected line, in which 75% of the smallest fishes were harvested. By contrast, we did not find evidence for harvest-induced evolution of personality in the positively size-selected line, in which 75% of the largest fishes were harvested. We conclude that size-selective harvesting alters individual fish personality in a social fish.

The role of sexual selection in the context of harvest‐induced evolution is poorly understood. However, elevated and trait‐selective harvesting of wild populations may change sexually selected traits, which in turn can affect mate choice and reproduction. We experimentally evaluated the potential for fisheries‐induced evolution of mating behaviour and reproductive allocation in fish. We used an experimental system of zebrafish (Danio rerio) lines exposed to large, small or random (i.e. control) size‐selective mortality. The large‐harvested line represented a treatment simulating the typical case in fisheries where the largest individuals are preferentially harvested. We used a full factorial design of spawning trials with size‐matched individuals to control for the systematic impact of body size during reproduction, thereby singling out possible changes in mating behaviour and reproductive allocation. Both small size‐selective mortality and large size‐selective mortality left a legacy on male mating behaviour by elevating intersexual aggression. However, there was no evidence for line‐assortative reproductive allocation. Females of all lines preferentially allocated eggs to the generally less aggressive males of the random‐harvested control line. Females of the large‐harvested line showed enhanced reproductive performance, and males of the large‐harvested line had the highest egg fertilization rate among all males. These findings can be explained as an evolutionary adaptation by which individuals of the large‐harvested line display an enhanced reproductive performance early in life to offset the increased probability of adult mortality due to harvest. Our results suggest that the large‐harvested line evolved behaviourally mediated reproductive adaptations that could increase the rate of recovery when populations adapted to high fishing pressure come into secondary contact with other populations. peerReviewed

The conservation and management of endangered species requires information on their genetic diversity, relatedness and population structure. The main genetic markers applied for these questions are microsatellites and single nucleotide polymorphisms (SNPs), the latter of which remain the more resource demanding approach in most cases. Here, we compare the performance of two approaches, SNPs obtained by restriction-site-associated DNA sequencing (RADseq) and 16 DNA microsatellite loci, for estimating genetic diversity, relatedness and genetic differentiation of three, small, geographically close wild brown trout (Salmo trutta) populations and a regionally used hatchery strain. The genetic differentiation, quantified as F-ST, was similar when measured using 16 microsatellites and 4,876 SNPs. Based on both marker types, each brown trout population represented a distinct gene pool with a low level of interbreeding. Analysis of SNPs identified half- and full-siblings with a higher probability than the analysis based on microsatellites, and SNPs outperformed microsatellites in estimating individual-level multilocus heterozygosity. Overall, the results indicated that moderately polymorphic microsatellites and SNPs from RADseq agreed on estimates of population genetic structure in moderately diverged, small populations, but RADseq outperformed microsatellites for applications that required individual-level genotype information, such as quantifying relatedness and individual-level heterozygosity. The results can be applied to other small populations with low or moderate levels of genetic diversity.

A better understanding of the environmental and genetic contribution to migratory behavior and the evolution of traits linked to migration is crucial for fish conservation and fisheries management. Up to date, a few genes with unequivocal influence on the adoption of alternative migration strategies have been identified in salmonids. Here, we used a common garden set-up to measure individual migration distances of generally highly polymorphic brown trout Salmo trutta from two populations. Fish from the assumedly resident population showed clearly shorter migration distances than the fish from the assumed migratory population at the ages of 2 and 3 years. By using two alternative analytical pipelines with 22186 and 18264 SNPs obtained through RAD-sequencing, we searched for associations between individual migration distance, and both called genotypes and genotype probabilities. None of the SNPs showed statistically significant individual effects on migration after correction for multiple testing. By choosing a less stringent threshold, defined as an overlap of the top 0.1% SNPs identified by the analytical pipelines, GAPIT and Angsd, we identified eight candidate genes that are potentially linked to individual migration distance. While our results demonstrate large individual and population level differences in migration distances, the detected genetic associations were weak suggesting that migration traits likely have multigenic control.

Candidate genes associated with migration have been identified in multiple taxa: including salmonids, many of whom perform migrations requiring a series of physiological changes associated with the freshwater–saltwater transition. We screened over 5,500 SNPs for signatures of selection related to migratory behavior of brown trout Salmo trutta by focusing on ten differentially migrating freshwater populations from two watersheds (the Koutajoki and the Oulujoki). We found eight outlier SNPs potentially associated with migratory versus resident life history using multiple (≥3) outlier detection approaches. Comparison of three migratory versus resident population pairs in the Koutajoki watershed revealed seven outlier SNPs, of which three mapped close to genes ZNF665-like, GRM4-like, and PCDH8-like that have been previously associated with migration and smoltification in salmonids. Two outlier SNPs mapped to genes involved in mucus secretion (ST3GAL1-like) and osmoregulation (C14orf37-like). The last two strongly supported outlier SNPs mapped to thermally induced genes (FNTA1-like, FAM134C-like). Within the Oulujoki, the only consistent outlier SNP mapped close to a gene (EZH2) that is associated with compensatory growth in fasted trout. Our results suggest that a relatively small yet common set of genes responsible for physiological functions associated with resident and migratory life histories is evolutionarily conserved. peerReviewed

Changes in trait variability owing to size-selective harvesting have received little attention in comparison with changes in mean trait values, perhaps because of the expectation that phenotypic variability should generally be eroded by directional selection typical for fishing and hunting. We show, however, that directional selection, in particular for large body size, leads to increased body-size variation in experimentally harvested zebrafish (Danio rerio) populations exposed to two alternative feeding environments: ad libitum and temporarily restricted food availability. Trait variation may influence population adaptivity, stability and resilience. Therefore, rather than exerting selection pressures that favor small individuals, our results stress the importance of protecting large ones as they can harbor a great amount of variation within a population, to manage fish stocks sustainably.

Changes in trait variability owing to size-selective harvesting have received little attention in comparison with changes in mean trait values, perhaps because of the expectation that phenotypic variability should generally be eroded by directional selection typical for fishing and hunting. We show, however, that directional selection, in particular for large body size, leads to increased body-size variation in experimentally harvested zebrafish (Danio rerio) populations exposed to two alternative feeding environments: ad libitum and temporarily restricted food availability. Trait variation may influence population adaptivity, stability and resilience. Therefore, rather than exerting selection pressures that favor small individuals, our results stress the importance of protecting large ones as they can harbor a great amount of variation within a population, to manage fish stocks sustainably.