19 results on '"Uyan, O."'
Search Results
2. Effects of vitamin A palmitate, β-carotene and retinoic acid on the growth and incidence of deformities in larvae of red sea bream Chrysophrys major
- Author
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Hernández-H, LH, primary, Teshima, S, additional, Koshio, S, additional, Ishikawa, M, additional, Gallardo-Cigarroa, FJ, additional, Alam, MS, additional, and Uyan, O, additional
- Published
- 2023
- Full Text
- View/download PDF
3. Mutation in protein disulfide isomerase A3 causes neurodevelopmental defects by disturbing endoplasmic reticulum proteostasis
- Author
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Medinas, D. B. (Danilo Bilches), Malik, S. (Sajid), Yıldız-Bölükbaşı, E. (Esra), Borgonovo, J. (Janina), Saaranen, M. J. (Mirva J), Urra, H. (Hery), Pulgar, E. (Eduardo), Afzal, M. (Muhammad), Contreras, D. (Darwin), Wright, M. T. (Madison T), Bodaleo, F. (Felipe), Quiroz, G. (Gabriel), Rozas, P. (Pablo), Mumtaz, S. (Sara), Díaz, R. (Rodrigo), Rozas, C. (Carlos), Cabral-Miranda, F. (Felipe), Piña, R. (Ricardo), Valenzuela, V. (Vicente), Uyan, O. (Ozgun), Reardon, C. (Christopher), Woehlbier, U. (Ute), Brown, R. H. (Robert H), Sena-Esteves, M. (Miguel), Gonzalez-Billault, C. (Christian), Morales, B. (Bernardo), Plate, L. (Lars), Ruddock, L. W. (Lloyd W), Concha, M. L. (Miguel L), Hetz, C. (Claudio), Tolun, A. (Aslıhan), Medinas, D. B. (Danilo Bilches), Malik, S. (Sajid), Yıldız-Bölükbaşı, E. (Esra), Borgonovo, J. (Janina), Saaranen, M. J. (Mirva J), Urra, H. (Hery), Pulgar, E. (Eduardo), Afzal, M. (Muhammad), Contreras, D. (Darwin), Wright, M. T. (Madison T), Bodaleo, F. (Felipe), Quiroz, G. (Gabriel), Rozas, P. (Pablo), Mumtaz, S. (Sara), Díaz, R. (Rodrigo), Rozas, C. (Carlos), Cabral-Miranda, F. (Felipe), Piña, R. (Ricardo), Valenzuela, V. (Vicente), Uyan, O. (Ozgun), Reardon, C. (Christopher), Woehlbier, U. (Ute), Brown, R. H. (Robert H), Sena-Esteves, M. (Miguel), Gonzalez-Billault, C. (Christian), Morales, B. (Bernardo), Plate, L. (Lars), Ruddock, L. W. (Lloyd W), Concha, M. L. (Miguel L), Hetz, C. (Claudio), and Tolun, A. (Aslıhan)
- Abstract
Recessive gene mutations underlie many developmental disorders and often lead to disabling neurological problems. Here, we report identification of a homozygous c.170G>A (p.Cys57Tyr or C57Y) mutation in the gene coding for protein disulfide isomerase A3 (PDIA3, also known as ERp57), an enzyme that catalyzes formation of disulfide bonds in the endoplasmic reticulum, to be associated with syndromic intellectual disability. Experiments in zebrafish embryos show that PDIA3C57Y expression is pathogenic and causes developmental defects such as axonal disorganization as well as skeletal abnormalities. Expression of PDIA3C57Y in the mouse hippocampus results in impaired synaptic plasticity and memory consolidation. Proteomic and functional analyses reveal that PDIA3C57Y expression leads to dysregulation of cell adhesion and actin cytoskeleton dynamics, associated with altered integrin biogenesis and reduced neuritogenesis. Biochemical studies show that PDIA3C57Y has decreased catalytic activity and forms disulfide-crosslinked aggregates that abnormally interact with chaperones in the endoplasmic reticulum. Thus, rare disease gene variant can provide insight into how perturbations of neuronal proteostasis can affect the function of the nervous system.
- Published
- 2022
4. Lifetime Analysis of Underwater Wireless Networks Concerning Privacy with Energy Harvesting and Compressive Sensing
- Author
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Uyan, O. Gokhan, primary and Gungor, V. Cagri, additional
- Published
- 2019
- Full Text
- View/download PDF
5. QoS-aware downlink scheduling algorithm for LTE networks: A case study on edge users
- Author
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Gungor, V. Cagri, primary and Uyan, O. Gokhan, additional
- Published
- 2017
- Full Text
- View/download PDF
6. Growth and production in long-line cultivated Mediterranean mussel (Mylitus galloprovincialis) in Sinop, Black Sea
- Author
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Karayucel, S, Karayucel, I, Erdem, M, Saygun, S, Uyan, O, and Ondokuz Mayıs Üniversitesi
- Subjects
Black Sea ,growth ,parasitic diseases ,mussel ,culture - Abstract
Saygun, Serkan/0000-0002-9789-3284 WOS: 000186034400004 One-year rope-grown mussels (Mytilus galloprovincialis Lam.) with a mean length of 37.6+/-0.52 mm and live weight of 5.02+/-0.28 g were collected from fish farm mooring ropes and cultured in cotton or nylon socks in a long-line system in Sinop, Black Sea. The growth of the mussels, water temperature, salinity, chlorophyll a, seston and particulate organic matter were monitored from July 1997 for eleven months. Shell length and live weight were high from May to October when the temperature was 13degreesC-25degreesC. Growth decreased during late autumn and winter due to the low temperature and food availability. A significant and positive relationship was found between particulate organic matter, shell growth and live weight. At the end of the experiment, shell length reached 59.89+/-0.93 mm in the cotton socks and 57.81+/-0.88 mm in the nylon socks, while live weight reached 19.42+/-0.91 g in the cotton socks and 16.89+/-0.76 g in the nylon. Harvestable production was lower in the cotton (4.1 kg/m) than in the nylon socks (8.7 kg/m). Meat yield was high during spring and early summer and significantly and positively correlated with chlorophyll a, particulate organic matter and seston. In the light of these results, recommendations for mussel culture in the long-line system are given.
- Published
- 2003
7. Deniz salyangozunun, Rapana thomasiana Gross 1861, Yumurta Kapsülü ?Içerisindeki Larval Gelişim Evreleri
- Author
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Uyan O., Aral O., and Ondokuz Mayıs Üniversitesi
- Subjects
Rapana thomasiana ,Japanese snail ,Black Sea ,Larval development ,fungi ,Gross 1861 - Abstract
In the present study, the larval development stages in the egg capsule of the Japanese snail (Rapana thomasiana, Gross 1861), distributed in the Black Sea were investigated. At the moment of capsule release, the diameter of the spherical egg was 151.5 ± 2.61 ?m. After the capsule was released, the eggs gradually lost their spherical structure. After the completion of the early larval development stage in the egg capsule, the larvae hatched from the capsule as a veliger on day 20. The larvae were pelagic during the following 5 days and settled to the bottom day 25. The length and width of the settled larvae reached 426.8 ± 2.84 ?m and 305.6 ± 2.2 ?m with a growth rate of 181.2% and 101.7%, respectively.
- Published
- 2003
8. A study on the possibilities of obtaining larva from native flat oysters (Ostrea edulis L.) living in the Black Sea and larval metamorphosis stage
- Author
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Uyan O., Aral O., and Ondokuz Mayıs Üniversitesi
- Subjects
Black Sea ,Oyster ,Larval development ,Culture ,Ostrea edulis L - Abstract
In this research, the possibilities of obtaining larva from oysters (Ostrea edulis L.) living in the Black Sea and their metamorphosis stage were investigated. There were no difficulties in obtaining larvae. The results of this investigation indicate that flat oyster (Ostrea edulis L.) culture is possible in Black Sea conditions.
- Published
- 2000
9. The influence of dietary phospholipid level on the performances of juvenile amberjack,Seriola dumerili, fed non-fishmeal diets
- Author
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UYAN, O., primary, KOSHIO, S., additional, ISHIKAWA, M., additional, YOKOYAMA, S., additional, UYAN, S., additional, REN, T., additional, and HERNANDEZ, L.H.H., additional
- Published
- 2009
- Full Text
- View/download PDF
10. Effectiveness of l-ascorbyl-2-monophosphate Na/Ca as a vitamin C source for yellowtailSeriola quinqueradiatajuveniles
- Author
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REN, T., primary, KOSHIO, S., additional, TESHIMA, S., additional, ISHIKAWA, M., additional, PANGANIBAN, A., additional, UYAN, O., additional, and ALAM, M.S., additional
- Published
- 2008
- Full Text
- View/download PDF
11. Effect of two choline sources on the performance of postlarval Marsupenaeus japonicus bate
- Author
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MICHAEL, F.R., primary, TESHIMA, S., additional, KOSHIO, S., additional, ISHIKAWA, M., additional, UYAN, O., additional, and REN, T., additional
- Published
- 2007
- Full Text
- View/download PDF
12. The influence of dietary phospholipid level on the performances of juvenile amberjack, Seriola dumerili, fed non-fishmeal diets.
- Author
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UYAN, O., KOSHIO, S., ISHIKAWA, M., YOKOYAMA, S., UYAN, S., REN, T., and HERNANDEZ, L. H. H.
- Subjects
- *
PHOSPHOLIPIDS , *YELLOWTAIL , *AQUACULTURE industry , *DIET , *FISH meal - Abstract
The objective of the present study was to investigate the effect of dietary phospholipid (PL) level on growth and feed intake of juvenile amberjack ( Seriola dumerili) fed non-fishmeal (non-FM) diet containing alternative protein sources; soybean protein isolate, tuna muscle by-product powder and krill meal. Three non-FM diets were prepared to contain three levels (14, 37 and 54 g kg−1 dry diet) of PL (soybean lecithin acetone insoluble, 886 g kg−1) and growth performance was monitored in a 30-day growth trial by using 2.6 g of fish. The results indicated that final body weight, weight gain and feed intake significantly increased with increasing dietary PL level. At the highest dietary PL level (54 g kg−1 dry diet), the fish consumed 14.8% and 10.2% as much feed as those fish fed diets containing 14 g kg−1 dry diet and 37 g kg−1 dry diet PL, respectively. An increasing tendency with increasing dietary PL level on feed efficiency was observed. In conclusion, the present study demonstrated that dietary PL supplementation could increase feed intake, and improve the growth of juvenile S. dumerili fed non-FM diets. Therefore, purified PL might be a good candidate to stimulate the growth of fish through enhancing the feed intake when they are fed diets containing alternative protein sources. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
13. Effectiveness ofl-ascorbyl-2-monophosphate Na/Ca as a vitamin C source for yellowtail Seriola quinqueradiata juveniles.
- Author
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REN, T., KOSHIO, S., TESHIMA, S., ISHIKAWA, M., PANGANIBAN, A., UYAN, O., and ALAM, M. S.
- Subjects
VITAMIN C ,DIETARY supplements ,ANIMAL nutrition ,FISH development ,YELLOWTAIL ,JAPANESE amberjack - Abstract
A feeding experiment was conducted to examine the efficacy of a vitamin C (L-ascorbic acid, AsA) derivative,l-ascorbyl-2-monophosphate Na/Ca (AMP-Na/Ca) by comparing tol-ascorbyl-2-monophosphate-Mg (AMP-Mg) in terms of growth, AsA content in tissues, and hematology in yellowtail Seriola quinqueradiata juvenile (1.10 ± 0.01 g). Furthermore, a stress resistance test for the species fed AMP-Na/Ca was also conducted. In experiment 1, 11 test pellet diets with different levels of AMP-Na/Ca (0, 12, 43, 88, 440 and 881 mg AsA kg
−1 diet) and AMP-Mg (0, 16, 52, 106, 595 and 1164 mg AsA kg−1 diet) were formulated and fed to the yellowtail three times per day for 50 days. In both the vitamin C sources, the survival rates of the fish fed diets without supplemental AsA were lower than 50% at day 20, and more than 50% mortality occurred in fish that fed the diets containing 12 or 16 mg AsA kg−1 after day 30. However, no significant differences were detected in survival and growth among fish that fed the diets containing more than 43 mg AsA kg−1 . Liver and brain AsA concentrations generally increased with increasing dietary AsA level in both sources. In experiment 2, test diets were formulated to contain 43, 88, 440 and 881 mg AsA kg−1 using AMP-Na/Ca, and after 60 days of feeding, yellowtail juveniles were subjected to low salinity and air exposure stress. The fish that received diets with 440 mg AsA kg−1 showed significantly higher tolerance to low salinity stress and higher survival rate in air exposure stress than those of other groups. The present study demonstrated that yellowtail juveniles could utilize AMP-Na/Ca as an AsA source like AMP-Mg, and that supplementation of 43–52 mg AsA kg−1 diet was optimum for normal growth. However, this study showed that dietary inclusion of 440 mg AsA kg−1 would be necessary to improve stress resistance of this species. [ABSTRACT FROM AUTHOR]- Published
- 2008
- Full Text
- View/download PDF
14. The distinct genetic pattern of ALS in Turkey
- Author
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Ozoguz, A., Uyan, O., Birdal, G., Iskender, C., Omur, O., Lahut, S., Agim, Z. S., Kartal, E., Parman, Y., Tan, E., Koc, F., Deymeer, F., Oflazer, P., Hanagasi, H., Gurvit, H., basar bilgic, Durmus, H., Ertas, M., Kotan, D., Akalin, M. A., Gulluoglu, H., Zarifoglu, M., Aysal, F., Dosoglu, N., Bilguvar, K., Gunel, M., Keskin, O., Akgun, T., Ozcelik, H., and Basak, A. N.
15. Efectos del palmitato de vitamina A, el β-caroteno y el ácido retinoico en el crecimiento e incidencia de deformidades en larvas de pargo rojo Chrysophrys major.
- Author
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Hernández-H., L. H., Teshima, S., Koshio, S., Ishikawa, M., Gallardo-Cigarroa, F. J., Alam, M. S., and Uyan, O.
- Subjects
- *
VITAMIN A , *CHRYSOPHRYS , *NOTOCHORD , *LARVAE , *DEVELOPMENTAL biology , *VERTEBRAE , *AQUATIC resources , *AQUATIC habitats , *MARINE biology - Abstract
The effects of vitamin A palmitate (VAP; 2.7, 27 and 165 mg/100 g diet), β-carotene (βC; 1, 9 and 50 mg/100 g diet) and retinoic acid (RA; 2.8, 28 and 166 mg/100 g diet) on the incidence of deformities in red sea bream (Chrysophrys major) larvae were examined using zein-based micro-bound diets during 15 days. Growth (final body weight, weight gain and total length) and survival rate were affected by the increasing supplementation of these compounds. The abnormalities observed in the larvae included the compression or apparent fusion of the segments in the notochord and mouth deformities. Compression/apparent fusion of the segments was detected mainly in vertebrae of the hemal zone, affecting the total length of larvae. Incidence of these deformities increased with increasing levels of VAP, βC and RA in the diets, but a significantly higher percentage of affected vertebrae was observed in the larvae fed the diets containing RA. The effect of βC was unclear in the present experiment, since only the highest concentration caused significant incidence. The results of this study show that dietary vitamin A may be related to the vertebral deformities in red sea bream larvae. [ABSTRACT FROM AUTHOR]
- Published
- 2006
16. The distinct genetic pattern of ALS in Turkey and novel mutations
- Author
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Aslihan Ozoguz, Piraye Oflazer, Aslı Gündoğdu Eken, Feza Deymeer, Yesim Parman, Hacer Durmus, Peter C. Sapp, A. Nazli Basak, Halil Güllüoğlu, Filiz Koç, Murat Gunel, Fikret Aysal, Ozlem Keskin, Mehmet Ali Akalin, Başar Bilgiç, Suna Lahut, Tahsin Akgün, Dilcan Kotan, Özgün Uyan, Mustafa Ertas, Nilgün Döşoğlu, John Landers, Pinar Kavak, Mehmet Zarifoglu, Nesli-Ece Sen, Ceren Saygı, Kaya Bilguvar, Hakan Gurvit, Özgür Ömür, Robert H. Brown, Hasmet Hanagasi, Ersin Tan, Güneş Birdal, Zeynep Sena Agim, Hilmi Ozcelik, Pamela Keagle, Ceren Iskender, Ece Kartal, Çukurova Üniversitesi, Ozoguz, A, Uyan, O, Birdal, G, Iskender, C, Kartal, E, Lahut, S, Omur, O, Agim, ZS, Eken, AG, Sen, NE, Kavak, P, Saygi, C, Sapp, PC, Keagle, P, Parman, Y, Tan, E, Koc, F, Deymeer, F, Oflazer, P, Hanagasi, H, Gurvit, H, Bilgic, B, Durmus, H, Ertas, M, Kotan, D, Akalin, MA, Gulluoglu, H, Zarifoglu, M, Aysal, F, Dosolu, N, Bilguvar, K, Gunel, M, Keskin, O, Akgun, T, Ozcelik, H, Landers, JE, Brown, RH, Basak, AN, Sakarya Üniversitesi/Tıp Fakültesi/Dahili Tıp Bilimleri Bölümü, and Kotan Dündar, Dilcan
- Subjects
Male ,Aging ,Turkey ,TDP-43 ,Protein Deglycase DJ-1 ,Autophagy-Related Proteins ,Cell Cycle Proteins ,Gene mutation ,medicine.disease_cause ,Superoxide Dismutase-1 ,C9orf72 ,Transcription Factor TFIIIA ,Sequestosome-1 Protein ,Guanine Nucleotide Exchange Factors ,Exome ,Amyotrophic lateral sclerosis ,Exome sequencing ,Oncogene Proteins ,Genetics ,Mutation ,education.field_of_study ,General Neuroscience ,Intracellular Signaling Peptides and Proteins ,Nuclear Proteins ,SOD1 ,Middle Aged ,DNA-Binding Proteins ,Female ,Adult ,Adolescent ,Population ,TRPM Cation Channels ,Nerve Tissue Proteins ,Protein Serine-Threonine Kinases ,Biology ,TARDBP ,Article ,Young Adult ,medicine ,Humans ,education ,Ubiquitins ,Genetic Association Studies ,Adaptor Proteins, Signal Transducing ,Aged ,FUS ,C9orf72 Protein ,Superoxide Dismutase ,Amyotrophic Lateral Sclerosis ,Membrane Transport Proteins ,Proteins ,medicine.disease ,Cytoskeletal Proteins ,RNA-Binding Protein FUS ,Neurosciences & Neurology ,Neurology (clinical) ,Geriatrics and Gerontology ,ALS ,Developmental Biology - Abstract
PubMedID: 25681989 The frequency of amyotrophic lateral sclerosis (ALS) mutations has been extensively investigated in several populations; however, a systematic analysis in Turkish cases has not been reported so far. In this study, we screened 477 ALS patients for mutations, including 116 familial ALS patients from 82 families and 361 sporadic ALS (sALS) cases. Patients were genotyped for C9orf72 (18.3%), SOD1 (12.2%), FUS (5%), TARDBP (3.7%), and UBQLN2 (2.4%) gene mutations, which together account for approximately 40% of familial ALS in Turkey. No SOD1 mutations were detected in sALS patients; however, C9orf72 (3.1%) and UBQLN2 (0.6%) explained 3.7% of sALS in the population. Exome sequencing revealed mutations in OPTN, SPG11, DJ1, PLEKHG5, SYNE1, TRPM7, and SQSTM1 genes, many of them novel. The spectrum of mutations reflect both the distinct genetic background and the heterogeneous nature of the Turkish ALS population. © 2015 Elsevier Inc. 99HB0101 02OB0101 04B101D 08HB102 10B01P8 11B01P6 TUBITAK-SBAG2007 COST-TUBITAK-SBAG2007 TUBITAK-EVRENA-SBAG2009 British Association for Psychopharmacology This study was supported by Suna and İnan Kıraç Foundation (SVIKV) (2005–2008, 2008–2011, 2011–2014) , Bogazici University (Grant number 99HB0101 02OB0101 04B101D 08HB102 10B01P8 11B01P6) Research Funds (BAP), and The Scientific and Technological Research Council of Turkey (TUBITAK-SBAG2007 COST-TUBITAK-SBAG2007 TUBITAK-EVRENA-SBAG2009) . We gratefully acknowledge their generous contributions. We thank Ilknur Yıldız, Selda Dağdeviren, Irmak Şahbaz, Alireza Khodadadi Jamayran, Helena Alstermark, and Anna Birve for their excellent technical assistance. We extend our thanks to Professor Jeffrey D. Macklis (Harvard Medical School, MA, USA) and Professor Peter Andersen (Umea University, Umea, Sweden) for their constructive contributions to this study; to Professor Coşkun Özdemir and Dr Sevtap Savaş for the critical reading of the manuscript; and to Cemile Koçoğlu, Fulya Akçimen, and Hamid Hamzeiy for their assistance in the preparation of the figures and tables. Last but not least, we cordially thank our patients, their families, and the Turkish ALS Association for their invaluable cooperation. This study is dedicated to the memory of our esteemed collaborator Dr Hilmi Özçelik, who passed away on May 2, 2013. Appendix A
- Published
- 2015
17. Mutation in protein disulfide isomerase A3 causes neurodevelopmental defects by disturbing endoplasmic reticulum proteostasis.
- Author
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Bilches Medinas D, Malik S, Yıldız-Bölükbaşı E, Borgonovo J, Saaranen MJ, Urra H, Pulgar E, Afzal M, Contreras D, Wright MT, Bodaleo F, Quiroz G, Rozas P, Mumtaz S, Díaz R, Rozas C, Cabral-Miranda F, Piña R, Valenzuela V, Uyan O, Reardon C, Woehlbier U, Brown RH, Sena-Esteves M, Gonzalez-Billault C, Morales B, Plate L, Ruddock LW, Concha ML, Hetz C, and Tolun A
- Subjects
- Adolescent, Adult, Animals, Axons metabolism, Axons pathology, Cell Adhesion, Cells, Cultured, Child, Cytoskeleton metabolism, Developmental Disabilities metabolism, Developmental Disabilities pathology, Female, Hippocampus metabolism, Hippocampus pathology, Humans, Integrins metabolism, Male, Mice, Mice, Inbred C57BL, Mutation, Missense, Neuronal Outgrowth, Neuronal Plasticity, Pedigree, Protein Disulfide-Isomerases metabolism, Zebrafish, Developmental Disabilities genetics, Endoplasmic Reticulum metabolism, Protein Disulfide-Isomerases genetics, Proteostasis
- Abstract
Recessive gene mutations underlie many developmental disorders and often lead to disabling neurological problems. Here, we report identification of a homozygous c.170G>A (p.Cys57Tyr or C57Y) mutation in the gene coding for protein disulfide isomerase A3 (PDIA3, also known as ERp57), an enzyme that catalyzes formation of disulfide bonds in the endoplasmic reticulum, to be associated with syndromic intellectual disability. Experiments in zebrafish embryos show that PDIA3
C57Y expression is pathogenic and causes developmental defects such as axonal disorganization as well as skeletal abnormalities. Expression of PDIA3C57Y in the mouse hippocampus results in impaired synaptic plasticity and memory consolidation. Proteomic and functional analyses reveal that PDIA3C57Y expression leads to dysregulation of cell adhesion and actin cytoskeleton dynamics, associated with altered integrin biogenesis and reduced neuritogenesis. Biochemical studies show that PDIA3C57Y has decreased catalytic activity and forms disulfide-crosslinked aggregates that abnormally interact with chaperones in the endoplasmic reticulum. Thus, rare disease gene variant can provide insight into how perturbations of neuronal proteostasis can affect the function of the nervous system., (© 2021 MRC Laboratory of Molecular Biology. Published under the terms of the CC BY 4.0 license.)- Published
- 2022
- Full Text
- View/download PDF
18. A novel dysferlin mutant pseudoexon bypassed with antisense oligonucleotides.
- Author
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Dominov JA, Uyan O, Sapp PC, McKenna-Yasek D, Nallamilli BR, Hegde M, and Brown RH Jr
- Abstract
Objective: Mutations in dysferlin (DYSF), a Ca(2+)-sensitive ferlin family protein important for membrane repair, vesicle trafficking, and T-tubule function, cause Miyoshi myopathy, limb-girdle muscular dystrophy type 2B, and distal myopathy. More than 330 pathogenic DYSF mutations have been identified within exons or near exon-intron junctions. In ~17% of patients who lack normal DYSF, only a single disease-causing mutation has been identified. We studied one family with one known mutant allele to identify both the second underlying genetic defect and potential therapeutic approaches., Methods: We sequenced the full DYSF cDNA and investigated antisense oligonucleotides (AONs) as a tool to modify splicing of the mRNA transcripts in order to process out mutant sequences., Results: We identified a novel pseudoexon between exons 44 and 45, (pseudoexon 44.1, PE44.1), which inserts an additional 177 nucleotides into the mRNA and 59 amino acids within the conserved C2F domain of the DYSF protein. Two unrelated dysferlinopathy patients were also found to carry this mutation. Using AONs targeting PE44.1, we blocked the abnormal splicing event, yielding normal, full-length DYSF mRNA, and increased DYSF protein expression., Interpretation: This is the first report of a deep intronic mutation in DYSF that alters mRNA splicing to include a mutant peptide fragment within a key DYSF domain. We report that AON-mediated exon-skipping restores production of normal, full-length DYSF in patients' cells in vitro, offering hope that this approach will be therapeutic in this genetic context, and providing a foundation for AON therapeutics targeting other pathogenic DYSF alleles.
- Published
- 2014
- Full Text
- View/download PDF
19. Discovery, validation and characterization of Erbb4 and Nrg1 haplotypes using data from three genome-wide association studies of schizophrenia.
- Author
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Agim ZS, Esendal M, Briollais L, Uyan O, Meschian M, Martinez LA, Ding Y, Basak AN, and Ozcelik H
- Subjects
- Alleles, Binding Sites, Chromosome Mapping methods, Databases, Genetic, Exons, Female, Genetic Variation, Genotype, Haplotypes, Humans, Male, Receptor, ErbB-4, Signal Transduction, ErbB Receptors genetics, Genome-Wide Association Study, Neuregulin-1 genetics, Schizophrenia genetics
- Abstract
Schizophrenia is one of the most common and complex neuropsychiatric disorders, which is contributed both by genetic and environmental exposures. Recently, it is shown that NRG1-mediated ErbB4 signalling regulates many important cellular and molecular processes such as cellular growth, differentiation and death, particularly in myelin-producing cells, glia and neurons. Recent association studies have revealed genomic regions of NRG1 and ERBB4, which are significantly associated with risk of developing schizophrenia; however, inconsistencies exist in terms of validation of findings between distinct populations. In this study, we aim to validate the previously identified regions and to discover novel haplotypes of NRG1 and ERBB4 using logistic regression models and Haploview analyses in three independent datasets from GWAS conducted on European subjects, namely, CATIE, GAIN and nonGAIN. We identified a significant 6-kb block in ERBB4 between chromosome locations 212,156,823 and 212,162,848 in CATIE and GAIN datasets (p = 0.0206 and 0.0095, respectively). In NRG1, a significant 25-kb block, between 32,291,552 and 32,317,192, was associated with risk of schizophrenia in all CATIE, GAIN, and nonGAIN datasets (p = 0.0005, 0.0589, and 0.0143, respectively). Fine mapping and FastSNP analysis of genetic variation located within significantly associated regions proved the presence of binding sites for several transcription factors such as SRY, SOX5, CEPB, and ETS1. In this study, we have discovered and validated haplotypes of ERBB4 and NRG1 in three independent European populations. These findings suggest that these haplotypes play an important role in the development of schizophrenia by affecting transcription factor binding affinity.
- Published
- 2013
- Full Text
- View/download PDF
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