1,594 results on '"Vabret A"'
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2. Genotypic and phenotypic characterisation of respiratory syncytial virus after nirsevimab breakthrough infections: a large, multicentre, observational, real-world study
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Zemali, Naël, Burrel, Sonia, Moisan, Alice, Zavaoarisaina, Zakasoa-Mbololona, Legros, Romain, Derman, Boris, Pargny, Vincent, Petat, Hortense, Plantier, Jean-Christophe, Avettand-Fenoel, Véronique, Ferrani, Salim, Guinard, Jérome, Guillaume, Clémence, Mchantaf, Gilbert, Marie, Victoria, Bret, Laurent, Lesne, Fabien, de Oliveira, Anthony, Regueme, Alexandre, Alidjinou, Kazali, Chollet, Lionel, Gardan, Vincent, Brichler, Ségolène, de Pontual, Loic, Aupiais, Camille, Marot, Stéphane, Schnuriger, Aurélie, Perrier, Marine, Jatteau, Pierre, Fofana, Djeneba, Cocherie, Théophile, Teyssou, Elisa, Soulié, Cathia, Calvez, Vincent, Larrat, Sylvie, Faisant, Anne, Mortamet, Guillaume, Tournegros, Caroline, Habib, Mohamed, Pillet, Sylvie, Cantais, Aymeric, Zekre, Franck, Bourlet, Thomas, Boussetta-Charfi, Oulfa, Chenafi-Adham, Sara, Gleizes, Eva, Hartard, Cédric, Lefeuvre, Caroline, Bouthry, Elise, Mouna, Lina, Warnakulasuriya, Fairly, Le Hingrat, Quentin, Jaffar, Marie-Christine, Heaugwane, Diana, Azemar, Benjamin, Mnemosyme, Nicolas, Souply, Laurent, François, Catherine, Castelain, Sandrine, Rames, Cinthia, Bécourt, Arnaud, Engelmann, Ilka, Jeziorski, Eric, Foulongne, Vincent, Henry, Steven, Domitien, Léa, Handala, Lynda, Gaudy-Graffin, Catherine, Crémadés, Agathe, Henry, Amandine, Pennisi, Alessandra, Salmona, Maud, Le Goff, Jérôme, Mafi, Sarah, Gabassi, Audrey, Néré, Marie-Laure, Bonacorsi, Stéphane, Ouldali, Naim, Rachik Abdeljalil, Senhaji, Rameix-Welti, Marie-Anne, Reslan, Alawyia, Rahou, Yannis, Bourret, Jérome, Lemoine, Frédérique, Da Silva, Kévin, Berreira Ibraim, Samar, Yab, Emilie, Enouf, Vincent, Donati, Flora, Prot, Matthieu, Jeyarajah, Banujaa, Simon-Loriere, Etienne, Dossou, Nefert Candace, Vabret, Astrid, Fourati, Slim, Rodriguez, Christophe, Pawlotsky, Jean-Michel, Cappy, Pierre, Soulier, Alexandre, Ader, Mohamed, Seng, Sarah, Ly, Arnaud, Natella, Pierre-André, Audureau, Etienne, Dos Santos, Georges, Fagour, Laurence, Schapira, Anne-Julie, Flechelles, Olivier, Deroche, Luc, Leveque, Nicolas, Morton Fauche, Claire, Imbert, Berthe-Marie, Castain, Louise, Rodallec, Audreay, Sourice, Justine, Gras-le Guen, Christele, Chauvire-Drouard, Anne, Gault, Elyanne, Moreau, Frédérique, Deback, Claire, Gallais, Floriane, Solis, Morgane, Stephan, Valentin, Pilorgé, Léa, Vallet, Sophie, Gaitan, Léa, Rogez, Sylvie, Mirand, Audrey, Henquell, Cecile, Pronier, Charlotte, Thibault, Vincent, Trémeaux, Pauline, Claudet, Isabelle, Pucelle, Mélanie, Staes, Laetitia, Vellas, Camille, Carcenac, Romain, Veyrenche, Nicolas, Casalegno, Jean-sébastien, Gaymard, Alexandre, Kombou, Jose, Bal, Antonin, Ogoudjobi, Stanislas, Reslan, Alawiya, Casalegno, Jean-Sébastien, Tremeaux, Pauline, Imbert-Marcille, Berthe-Marie, Zemali, Nael, Jaffar-Bandjee, Marie-Christine, Francois, Catherine, Schwartz, Olivier, Buchrieser, Julian, Pawlotsky, Jean-MiIchel, and Lemoine, Frédéric
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- 2025
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3. Clinical Spectrum and Prognosis of Atypical Autosomal Dominant Polycystic Kidney Disease Caused by Monoallelic Pathogenic Variants of IFT140
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Winterbottom, Jean, Simms, Roslyn J., Caroli, Anna, Demoulin, Nathalie, Furlano, Monica, Pybus, Marc, Gansevoort, Ron, Meijer, Esther, Grall, A., Moal, M.C., Tanquerel, T., Hanrotel, C., Segalen, I., Lanfranco, L., C, Mesguen, A, Kersale, A, Capdeville, V, Huynh, Hourmant, M., Dantal, J., Giral, M., Meurette, A., Lino, M., Garandeau, C., Hodemon-Corne, B., Allain-Launay, E., Cantarovich, D., Blancho, G., Hristea, D., Couvrat, G., Fakhouri, F., Lavainne, F., Vercel, C., Chapal, M., Le Fur, A., Gourraud, C., Deltombe, C., Vigneau, C., Morin, M.P., Le Pogamp, P., Frouget, T., Gie, S., Rivalan, J., Laruelle, E., Richer, C., Lorcy, N., Golbin, L., Terrasse, M., Morice, S., Brenier, H., Michel, A., Tomkiewicz, E., Nguyen, Q.L., Vabret, E., Lavergne, A., Pierre, E., Chemouny, J., Halimi, J.M., Longuet, H., Gatault, P., Merieau, E., Barbet, C., Buchler, M., Golea, G., Ghouti, L., Gautard, D., Sautenet, B., François, M., Fournier, A., Baron, C., Salmon, C., Rabot, N., Prat, L., Valentin, J.F., Chevallier, E., Birmele, B., Genest, C., Goin, N., Goumard, A., Bridoux, F., Desport, E., Thierry, A., Ecotiere, L., Touchard, G., Belmouaz, M., Javaugue, V., Bauwens, M., Fride-Leroy, F., Goussard, G., Bouteau, I., Jacquemont, L., Subra, J.F., Augusto, J.F., Duveau, A., Besson, V., Cousin, M., Sayegh, J., Onno, C., Maghakian, M.N., Demiselle, J., Deschamps, C., Garnier, A.S., Guibert, F., Planchais, M., Charasse, C., Stanescu, C., Le Cacheux, P., Baluta, S., Leonetti, F., Boulahrouz, R., Ferrier, M.L., Freguin, C., Simon, A., Potier, J., Coulibaly, J.M., Colombo, A., Delezire, A., Renaudineau, E., Dolley-Hitze, T., Perrichot, R., Michez, E., Mandart, L., Menoyo, V., Pincon, E., Muresan, C., Durand, P.Y., Corlu, L., Wegner, I., Siohan, P., Metes, I., Guyon-Roger, T., Wehbe, B., Gueguen, L., Drouet, C., Loheac, C., Sawadogo, T., Le Guillou, A., Le Jeune, M., Beillard, G., Lefevre, S., Chamontin, C., Georgescu, S., Jousset, P., Latif, R., Massad, M., Jaulin, J.P., Querard, A.H., Ottavioli, J.N., Target, N., Chapal, A., Charpy, V., Besnier, D., Regnier-Le Coz, S., Blanpain, A., Durault, S., Larmet, D., Le Clech, A., Pouteau, L.M., Labatut, D., Coindre, J.P., Sigogne, M., Piccoli, G., Bachelet-Rousseau, C., Delbes, S., Fritz, O., Pourreau, F., Mzoughi, S., Guillodo, M.P., Gosselin, M., Depraetre, P., Strullu, B., Chaffara, E., Le Mee, M., Terki, N., Goulesque, K., Benarbia, S., Dimulescu, M., Rifaat, M., Duneau, G., Legrand, D., Georges, E., Seret, G., Babinet, F., Lanoiselee, S., Savoiu, C., Testa, A., Oancea, I., Coupel, I., Parahy, S., Lefrancois, G., Briand, E., Bugnon, D., Ambrose, John C., Arumugam, Prabhu, Bevers, Roel, Bleda, Marta, Boustred, Christopher R., Brittain, Helen, Chan, Georgia C., Fowler, Tom, Giess, Adam, Hamblin, Angela, Hubbard, Tim J.P., Jackson, Rob, Kayikci, Melis, Kousathanas, Athanasios, Lahnstein, Lea, Leigh, Sarah E.A., Leong, Ivonne U.S., Lopez, Javier F., Maleady-Crowe, Fiona, McEntagart, Meriel, Minneci, Federico, Murugaesu, Nirupa, O’Donovan, Peter, Odhams, Chris A., Pereira, Mariana Buongermino, Perez-Gil, Daniel, Pullinger, John, Rahim, Tahrima, Rendon, Augusto, Rogers, Tim, Savage, Kevin, Sawant, Kushmita, Scott, Richard H., Siddiq, Afshan, Sieghart, Alexander, Smith, Samuel C., Stuckey, Alexander, Tanguy, Mélanie, Taylor Tavares, Ana Lisa, Thompson, Simon R., Welland, Matthew J., Williams, Eleanor, Boardman-Pretty, Freya, Moutsianas, Loukas, Mueller, Michael, Caulfield, Mark J., Elgar, Greg, Henderson, Shirley, Jones, Louise J., Kasperaviciute, Dalia, Need, Anna C., Patch, Christine, Sosinsky, Alona, Thomas, Ellen R.A., Tucci, Arianna, Witkowska, Katarzyna, Wood, Suzanne M., Zagorec, Nikola, Calamel, Alizée, Delaporte, Margaux, Olinger, Eric, Orr, Sarah, Sayer, John A., Pillay, Vignesh-Guru, Denommé-Pichon, Anne-Sophie, Tran Mau-Them, Frederic, Nambot, Sophie, Faivre, Laurence, Ars, Elisabet, Torra, Roser, Ong, Albert C.M., Devuyst, Olivier, Perico, Noberto, Després, Aurore Michel, Lemoine, Hugo, de Fallois, Jonathan, Brousse, Romain, Hummel, Aurélie, Knebelmann, Bertrand, Maisonneuve, Nathalie, Halbritter, Jan, Le Meur, Yannick, Audrézet, Marie-Pierre, and Cornec-Le Gall, Emilie
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- 2025
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4. Online immunology education for a global world
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Vabret, Nicolas, Mateus-Tique, Jaime, Salmon, Hélène, Martin, Jérôme C., Mateo, Véronique, Serrano, Sandra, Lemoine, François, Chammas, Roger, and Merad, Miriam
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- 2024
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5. Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms
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Sun, Siyu, You, Eunae, Hong, Jungeui, Hoyos, David, Del Priore, Isabella, Tsanov, Kaloyan M., Mattagajasingh, Om, Di Gioacchino, Andrea, Marhon, Sajid A., Chacon-Barahona, Jonathan, Li, Hao, Jiang, Hua, Hozeifi, Samira, Rosas-Bringas, Omar, Xu, Katherine H., Song, Yuhui, Lang, Evan R., Rojas, Alexandra S., Nieman, Linda T., Patel, Bidish K., Murali, Rajmohan, Chanda, Pharto, Karacay, Ali, Vabret, Nicolas, De Carvalho, Daniel D., Zenklusen, Daniel, LaCava, John, Lowe, Scott W., Ting, David T., Iacobuzio-Donahue, Christine A., Solovyov, Alexander, and Greenbaum, Benjamin D.
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- 2024
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6. Efficacy assessment of antiretroviral drugs against equine infectious anemia virus in vitro
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Schimmich, Cécile, Vabret, Astrid, and Valle-Casuso, José-Carlos
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- 2024
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7. Human metapneumovirus infection is associated with a substantial morbidity and mortality burden in adult inpatients
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Quentin Philippot, Blandine Rammaert, Gaëlle Dauriat, Cédric Daubin, Frédéric Schlemmer, Adrien Costantini, Yacine Tandjaoui-Lambiotte, Mathilde Neuville, Emmanuelle Desrochettes, Alexis Ferré, Laetitia Bodet Contentin, François-Xavier Lescure, Bruno Megarbane, Antoine Belle, Jean Dellamonica, Sylvain Jaffuel, Jean-Luc Meynard, Jonathan Messika, Nicolas Lau, Nicolas Terzi, Isabelle Runge, Olivier Sanchez, Benjamin Zuber, Emmanuel Guerot, Anahita Rouze, Patricia Pavese, François Bénézit, Jean-Pierre Quenot, Xavier Souloy, Anne Lyse Fanton, David Boutoille, Vincent Bunel, Astrid Vabret, Jacques Gaillat, Anne Bergeron, Nathanaël Lapidus, Muriel Fartoukh, and Guillaume Voiriot
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Human metapneumovirus ,Pneumonia ,Viral pneumonia ,Respiratory viruses ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Human metapneumovirus (hMPV) is one of the leading respiratory viruses. This prospective observational study aimed to describe the clinical features and the outcomes of hMPV-associated lower respiratory tract infections in adult inpatients. Methods: Consecutive adult patients admitted to one of the 31 participating centers with an acute lower respiratory tract infection and a respiratory multiplex PCR positive for hMPV were included. A primary composite end point of complicated course (hospital death and/or the need for invasive mechanical ventilation) was used. Results: Between March 2018 and May 2019, 208 patients were included. The median age was 74 [62–84] years. Ninety-seven (47 %) patients were men, 187 (90 %) had at least one coexisting illness, and 67 (31 %) were immunocompromised. Median time between first symptoms and hospital admission was 3 [2–7] days. The two most frequent symptoms were dyspnea (86 %) and cough (85 %). The three most frequent clinical diagnoses were pneumonia (42 %), acute bronchitis (20 %) and acute exacerbation of chronic obstructive pulmonary disease (16 %). Among the 52 (25 %) patients who had a lung CT-scan, the most frequent abnormality was ground glass opacity (41 %). While over four-fifths of patients (81 %) received empirical antibiotic therapy, a bacterial coinfection was diagnosed in 61 (29 %) patients. Mixed flora (16 %) and enterobacteria (5 %) were the predominant documentations. The composite criterion of complicated course was assessable in 202 (97 %) patients, and present in 37 (18 %) of them. In the subpopulation of pneumonia patients (42 %), we observed a more complicated course in those with a bacterial coinfection (8/24, 33 %) as compared to those without (5/60, 8 %) (p = 0.02). Sixty (29 %) patients were admitted to the intensive care unit. Among them, 23 (38 %) patients required invasive mechanical ventilation. In multivariable analysis, tachycardia and alteration of consciousness were identified as risk factors for complicated course. Conclusion: hMPV-associated lower respiratory tract infections in adult inpatients mostly involved elderly people with pre-existing conditions. Bacterial coinfection was present in nearly 30 % of the patients. The need for mechanical ventilation and/or the hospital death were observed in almost 20 % of the patients.
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- 2024
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8. Protocol for the development of mRNA lipid nanoparticle vaccines and analysis of immunization efficiency in mice
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Neha Karekar, Ashley Reid Cahn, Judit Morla-Folch, Alexis Saffon, Ross W. Ward, Aparna Ananthanarayanan, Abraham J.P. Teunissen, Nina Bhardwaj, and Nicolas Vabret
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cancer ,immunology ,biotechnology and bioengineering ,Science (General) ,Q1-390 - Abstract
Summary: Here, we present a protocol for the development of mRNA-loaded lipid nanoparticle (LNP) vaccines for target antigen sequences of interest. We describe key steps required to design and synthesize mRNA constructs, their LNP encapsulation, and mouse immunization. We then detail quality control assays to determine RNA purity, guidelines to measure RNA immunogenicity using in vitro reporter systems, and a technique to evaluate antigen-specific T cell responses following immunization. : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
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- 2024
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9. Unravelling the acute respiratory infection landscape: virus type, viral load, health status and coinfection do matter
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Hortense Petat, Sandrine Corbet, Bryce Leterrier, Astrid Vabret, and Meriadeg Ar Gouilh
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respiratory viral load ,viral respiratory infections ,respiratory syncytial virus ,rhinovirus ,respiratory viral co-infections ,Microbiology ,QR1-502 - Abstract
IntroductionAcute respiratory infections (ARI) are the most common infections in the general population and are mainly caused by respiratory viruses. Detecting several viruses in a respiratory sample is common. To better understand these viral codetections and potential interferences, we tested for the presence of viruses and developed quantitative PCR (Polymerase Chain Reaction) for the viruses most prevalent in coinfections: human rhinovirus (HRV) and respiratory syncytial virus (RSV), and quantified their viral loads according to coinfections and health status, age, cellular abundance and other variables.Materials and methodsSamples from two different cohorts were analyzed: one included hospitalized infants under 12 months of age with acute bronchiolitis (n=719) and the other primary care patients of all ages with symptoms of ARI (n=685). We performed Multiplex PCR on nasopharyngeal swabs, and quantitative PCR on samples positive for HRV or/and RSV to determine viral loads (VL). Cellular abundance (CA) was also estimated by qPCR targeting the GAPDH gene. Genotyping was performed either directly from first-line molecular panel or by PCR and sequencing for HRV.ResultsThe risks of viral codetection were 4.1 (IC95[1.8; 10.0]) and 93.9 1 (IC95[48.7; 190.7]) higher in infants hospitalized for bronchiolitis than in infants in primary care for RSV and HRV respectively (p
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- 2024
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10. Unique Changes in the Incidence of Acute Chest Syndrome in Children With Sickle Cell Disease Unravel the Role of Respiratory Pathogens: A Time Series Analysis
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Assad, Zein, Valtuille, Zaba, Rybak, Alexis, Kaguelidou, Florentia, Lazzati, Andrea, Varon, Emmanuelle, Pham, Luu-Ly, Lenglart, Léa, Faye, Albert, Caseris, Marion, Cohen, Robert, Levy, Corinne, Vabret, Astrid, Gravey, François, Angoulvant, François, Koehl, Bérengère, and Ouldali, Naïm
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- 2024
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11. Procalcitonin levels and bacterial aetiology among COPD patients admitted to the ICU with severe pneumonia: a prospective cohort study
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Freymuth François, Terzi Nicolas, Ramakers Michel, Vabret Astrid, Fradin Sabine, Parienti Jean-Jacques, Daubin Cédric, Charbonneau Pierre, and du Cheyron Damien
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Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Serum procalcitonin (PCT) is considered useful in predicting the likeliness of developing bacterial infections in emergency setting. In this study, we describe PCT levels overtime and their relationship with bacterial infection in chronic obstructive pulmonary disease (COPD) critically ill patients with pneumonia. Methods We conducted a prospective cohort study in an ICU of a University Hospital. All consecutive COPD patients admitted for pneumonia between September 2005 and September 2006 were included. Respiratory samples were tested for the presence of bacteria and viruses. Procalcitonin was sequentially assessed and patients classified according to the probability of the presence of a bacterial infection. Results Thirty four patients were included. The PCT levels were assessed in 32/34 patients, median values were: 0.493 μg/L [IQR, 0.131 to 1.471] at the time of admission, 0.724 μg/L [IQR, 0.167 to 2.646] at six hours, and 0.557 μg/L [IQR, 0.123 to 3.4] at 24 hours. The highest PCT (PCTmax) levels were less than 0.1 μg/L in 3/32 (9%) patients and greater than 0.25 μg/L in 22/32 (69%) patients, suggesting low and high probability of bacterial infection, respectively. Fifteen bacteria and five viruses were detected in 15/34 (44%) patients. Bacteria were not detected in patients with PCTmax levels < 0.1 μg/L. In contrast, bacteria were detected in 4/7 (57%) patients estimated unlikely to have a bacterial infection by PCT levels (PCTmax > 0.1 and < 0.25 μg/L). Conclusion Based on these results we suggest that a PCT level cut off > 0.1 μg/L may be more appropriate than 0.25 μg/L (previously proposed for non severe lower respiratory tract infection) to predict the probability of a bacterial infection in severe COPD patients with pneumonia. Further studies testing procalcitonin-based antibiotic strategies are needed in COPD patients with severe pneumonia.
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- 2009
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12. Procalcitonin levels in acute exacerbation of COPD admitted in ICU: a prospective cohort study
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Freymuth François, Terzi Nicolas, Fradin Sabine, Ramakers Michel, Vabret Astrid, Parienti Jean-Jacques, Daubin Cédric, Charbonneau Pierre, and du Cheyron Damien
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Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Antibiotics are recommended for severe acute exacerbation of chronic obstructive pulmonary disease (AECOPD) admitted to intensive care units (ICU). Serum procalcitonin (PCT) could be a useful tool for selecting patients with a lower probability of developing bacterial infection, but its measurement has not been investigated in this population. Methods We conducted a single center prospective cohort study in consecutive COPD patients admitted to the ICU for AECOPD between September 2005 and September 2006. Sputum samples or tracheal aspirates were tested for the presence of bacteria and viruses. PCT levels were measured at the time of admittance, six hours, and 24 hours using a sensitive immunoassay. Results Thirty nine AECOPD patients were included, 31 of which (79%) required a ventilator support at admission. The median [25%–75% interquartile range] PCT level, assessed in 35/39 patients, was: 0.096 μg/L [IQR, 0.065 to 0.178] at the time of admission, 0.113 μg/L [IQR, 0.074 to 0.548] at six hours, and 0.137 μg/L [IQR, 0.088 to 0.252] at 24 hours. The highest PCT (PCTmax) levels were less than 0.1 μg/L in 14/35 (40%) patients and more than 0.25 μg/L in 10/35 (29%) patients, suggesting low and high probability of bacterial infection, respectively. Five species of bacteria and nine species of viruses were detected in 12/39 (31%) patients. Among the four patients positive for Pseudomonas aeruginosa, one had a PCTmax less than 0.25 μg/L and three had a PCTmax less than 0.1 μg/L. The one patient positive for Haemophilus influenzae had a PCTmax more than 0.25 μg/L. The presence or absence of viruses did not influence PCT at time of admission (0.068 vs 0.098 μg/L respectively, P = 0.80). Conclusion The likelihood of bacterial infection is low among COPD patients admitted to ICU for AECOPD (40% with PCT < 0.1 μg/L) suggesting a possible inappropriate use of antibiotics. Further studies are necessary to assess the impact of a procalcitonin-based therapeutic strategy in critically ill COPD patients.
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- 2008
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13. Preventing Respiratory Syncytial Virus in Children in France: A Narrative Review of the Importance of a Reinforced Partnership Between Parents, Healthcare Professionals, and Public Health Authorities
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Pinquier, Didier, Crépey, Pascal, Tissières, Pierre, Vabret, Astrid, Roze, Jean-Christophe, Dubos, François, Cahn-Sellem, Fabienne, Javouhey, Etienne, Cohen, Robert, and Weil-Olivier, Catherine
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- 2023
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14. Characteristics of respiratory viruses’ circulation through a six-year period (2016–2022) in a pediatric population in Normandy, France, and the impact of COVID-19 pandemic
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J. Dina, A. Moisan, P. Thibon, C. Creveuil, J. Adnet, A. Vabret, J. Brouard, and J. C. Plantier
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respiratory viruses ,epidemiology ,RSV ,influenza virus ,COVID-19 pandemic ,Microbiology ,QR1-502 - Abstract
ABSTRACT The impact of COVID-19 on the circulation of respiratory viruses has highlighted the need for ongoing surveillance and preparedness for emerging infectious diseases. The aim of this study was to provide information on the dynamics of respiratory viruses in pediatric populations to inform public health policies and strategies for the prevention and control of respiratory infections. This study analyzed data on the detection of respiratory viruses in pediatric populations from 2016 to 2022. The weekly number of tests and positive results for respiratory viruses were collected and analyzed from the two major university hospitals, Caen and Rouen. Different assays, including multiplex panels and rapid detection kits, were used for testing. The study analyzed the epidemiological trends of respiratory viruses in a French region during the COVID-19 pandemic. The data set included 37,969 tests, with a significant increase in the number of tests in 2020–2021 and 2021–2022. The rate of positive tests fell below 50% in 2021–2022. Enteroviruses (EV)/rhinoviruses (RV) and respiratory syncytial viruses (RSV) were the most frequently identified viruses, except in 2021–2022, when Flu ranked second. The Flu epidemic appeared slightly earlier in 2021–2022 and lasted for 25 weeks, with a doubling time of 4.03. The RSV epidemic occurred earlier in 2021–2022 and had similar dynamics to pre-pandemic years. EV/RV continued to circulate throughout the lockdowns, while low numbers of other viruses were detected. Our results emphasize the importance of continuing active surveillance of respiratory virus circulation and the need for new recommendations for respiratory virus detection in pediatric patients. IMPORTANCE The report highlights an epidemiological change in the circulation of respiratory viruses in pediatric populations due to strategies adopted against COVID-19 pandemic. COVID-19 has resulted in a significant increase in requests for multiplex respiratory research to identify the virus responsible for the symptoms. The diagnostic needs have increased, and the number of samples analyzed in 2021–2022 is equal to the samples analyzed over the four epidemic periods preceding the pandemic. The report suggests the importance of active surveillance of respiratory viruses' circulation and new recommendations for respiratory virus detection in pediatric patients.
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- 2023
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15. Positive and negative viral associations in patients with acute respiratory tract infections in primary care: the ECOVIR study
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Hortense Petat, Matthieu Schuers, Christophe Marguet, Xavier Humbert, François Le Bas, Andry Rabiaza, Sandrine Corbet, Bryce Leterrier, Astrid Vabret, and Meriadeg Ar Gouilh
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respiratory virus ,acute respiratory infections ,primary care ,respiratory syncytal virus ,rhinovirus ,respiratory coinfection ,Public aspects of medicine ,RA1-1270 - Abstract
IntroductionAcute respiratory infections (ARIs) are the most common viral infections encountered in primary care settings. The identification of causal viruses is still not available in routine practice. Although new strategies of prevention are being identified, knowledge of the relationships between respiratory viruses remains limited.Materials and methodsECOVIR was a multicentric prospective study in primary care, which took place during two pre-pandemic seasons (2018–2019 and 2019–2020). Patients presenting to their General practitioner (GP) with ARIs were included, without selecting for age or clinical conditions. Viruses were detected on nasal swab samples using a multiplex Polymerase Chain Reaction test focused on 17 viruses [Respiratory Syncytial Virus-A (RSV-A), RSV-B, Rhinovirus/Enterovirus (HRV), human Metapneumovirus (hMPV), Adenovirus (ADV), Coronaviruses (CoV) HKU1, NL63, 229E, OC43, Influenza virus (H1 and H3 subtypes), Influenza virus B, Para-Influenza viruses (PIVs) 1–4, and Bocavirus (BoV)].ResultsAmong the 668 analyzed samples, 66% were positive for at least one virus, of which 7.9% were viral codetections. The viral detection was negatively associated with the age of patients. BoV, ADV, and HRV occurred more significantly in younger patients than the other viruses (p
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- 2023
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16. Alternative RNA splicing generates shared clonal neoantigens across different types of cancer
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Brown, Matthew and Vabret, Nicolas
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- 2024
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17. Determinants of health-related quality of life in recently detoxified patients with severe alcohol use disorder
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Najlaa Lahbairi, Alice Laniepce, Shailendra Segobin, Nicolas Cabé, Céline Boudehent, François Vabret, Géraldine Rauchs, and Anne-Lise Pitel
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Health-related quality of life ,Alcohol use disorder ,Cognition ,Sleep ,Anxiety ,Impulsivity ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background Health-related quality of life (HRQoL) is an important clinical outcome in Alcohol Use Disorder (AUD) and is considered as a relevant indicator of treatment success. While a better understanding of the factors affecting HRQoL would enable to adjust patients’ care to favour treatment outcome, the determinants of HRQoL in AUD remain unclear. This study aims at describing HRQoL in AUD patients and at identifying its best predictors. Methods 53 recently detoxified patients with severe AUD (sAUD) underwent a cognitive assessment and filled in a HRQoL questionnaire dedicated to AUD patients (Alcohol Quality of Life Scale; AQoLS), as well as questionnaires concerning socio-demographics, alcohol history, sleep quality, depression, anxiety and impulsivity. 38 healthy controls (HC) underwent the same assessment (except AQoLS) in order to identify the altered cognitive and clinical variables that could potentially be determinants of HRQoL in sAUD. Results sAUD patients reported that alcohol affects their HRQoL mainly in the “negative emotions”, “control”, “relationships”, and “sleep” domains. Compared to HC, they were impaired on episodic memory, working memory, executive functions, and processing speed tasks. They also reported lower sleep quality, higher depression, anxiety and impulsivity. No association was found between AQoLS total score and socio-demographics, cognitive performance, or sleep quality in patients. We found a significant correlation between HRQoL and depression/anxiety as well as impulsivity. Anxiety and impulsivity were indeed the only significant predictors of HRQoL, explaining 47.7% of the variance. Conclusion Anxiety and impulsivity are crucial determinants of HRQoL in recently detoxified sAUD patients. Since anxiety and impulsivity are frequent issues in addiction and especially in AUD, they should be particularly considered by clinicians to favour treatment outcomes.
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- 2022
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18. The Preprint Club: A blueprint for community-based peer review
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Richter, Felix Clemens, Gea‐Mallorquí, Ester, Mortha, Arthur, Ruffin, Nicolas, and Vabret, Nicolas
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- 2023
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19. Equine Infectious Anemia Virus Cellular Partners Along the Viral Cycle.
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Schimmich, Cécile, Vabret, Astrid, Zientara, Stéphan, and Valle-Casuso, José Carlos
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EQUINE infectious anemia , *VIRAL proteins , *RETROVIRUSES , *VIRAL replication , *LENTIVIRUSES - Abstract
Equine infectious anemia virus (EIAV) is the simplest described lentivirus within the Retroviridae family, related to the human immunodeficiency viruses (HIV-1 and HIV-2). There is an important interplay between host cells and viruses. Viruses need to hijack cellular proteins for their viral cycle completion and some cellular proteins are antiviral agents interfering with viral replication. HIV cellular partners have been extensively studied and described, with a special attention to host proteins able to inhibit specific steps of the viral cycle, called restriction factors. Viruses develop countermeasures against these restriction factors. Here, we aim to describe host cellular protein partners of EIAV viral replication, being proviral or antiviral. A comprehensive vision of the interactions between the virus and specific host's proteins can help with the discovery of new targets for the design of therapeutics. Studies performed on HIV-1 can provide insights into the functioning of EIAV, as well as differences, as both types of virus research can benefit from each other. [ABSTRACT FROM AUTHOR]
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- 2025
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20. Prévalence de la carence martiale dans une population de patients insuffisants rénaux chroniques non dialysés : étude nationale multicentrique observationnelle CARENFER
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Choukroun, Gabriel, Kazes, Isabelle, Dantal, Jacques, Vabret, Elsa, Couzi, Lionel, Le Meur, Yannick, Trochu, Jean-Noël, and Cacoub, Patrice
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- 2022
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21. Impact of the mutational load on the virological response to a first-line rilpivirine-based regimen.
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Dimeglio, Chloé, Raymond, Stéphanie, Nicot, Florence, Jeanne, Nicolas, Carcenac, Romain, Lefebvre, Caroline, Izopet, Jacques, Roussel, C, Guillou-Guillemette, H Le, Alloui, C, Bettinger, D, Pallier, C, Fleury, H, Bellecave, P, Recordon-Pinson, P, Payan, C, Vallet, S, Vabret, A, Dina, J, Henquell, C, Mirand, A, Bouvier-Alias, M, de Rougemont, A, Si-Mohammed, A, Santos, G Dos, Morand, P, Signori-Schmuck, A, Bocket, L, Rogez, S, Andre, P, Tardy, JC, Trabaud, MA, Tamalet, C, Delamare, C, Montes, B, Schvoerer, E, Jeulin, H, Ferré, V, Rodallec, A, Guen, L Le, Cottalorda, J, Guinard, J, Guiguon, A, Descamps, D, Charpentier, C, Visseaux, B, Peytavin, G, Krivine, A, Bouviers-Alias, M, Avettand-Fenoel, V, Marcelin, AG, Calvez, V, Soulié, C, Wirden, M, Morand-Joubert, L, Lambert-Niclot, S, Fofana, D, Delaugerre, C, Chaix, ML, Mahjoub, N, Amiel, C, Schneider, V, Giraudeau, G, Beby-Defaux, A, Brodard, V, Maillard, A, Plantier, JC, Mourez, T, Leoz, M, Chaplain, C, Bourlet, T, Fafi-Kremer, S, Stoll-Keller, F, Schmitt, MP, Barth, H, Yerly, S, Poggi, C, Izopet, J, Raymond, S, Barin, F, Chaillon, A, Marque-Juillet, S, Roque-Afonso, AM, Haïm-Boukobza, S, Flandre, P, Grudé, M, Assoumou, L, and Costagliola, D
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Clinical Research ,Genetics ,HIV/AIDS ,Infectious Diseases ,Infection ,Antiretroviral Therapy ,Highly Active ,Drug Resistance ,Viral ,Female ,Genome ,Viral ,Genotype ,HIV Infections ,HIV-1 ,High-Throughput Nucleotide Sequencing ,Humans ,Male ,Mutation ,Rilpivirine ,Treatment Outcome ,Viral Load ,French National Agency for Research on AIDS and Viral Hepatitis (ANRS) AC11 Resistance Study Group ,Microbiology ,Medical Microbiology ,Pharmacology and Pharmaceutical Sciences - Abstract
ObjectivesTo determine how the load of rilpivirine-resistant variants (mutational load) influences the virological response (VR) of HIV-1-infected patients to a rilpivirine-based first-line regimen.Patients and methodsFour hundred and eighty-nine patients infected with HIV-1 whose reverse transcriptase gene had been successfully resistance genotyped using next-generation sequencing were given a first-line regimen containing rilpivirine. Variables associated with the VR at 12 months were identified using a logistic model. The results were used to build a multivariate model for each mutational load threshold and the R2 variations were analysed to identify the mutational load threshold that best predicted the VR.ResultsThe mutational load at baseline was the only variable linked to the VR at 12 months (P 1700 copies/mL and to 50% when the mutational load was > 9000 copies/mL. The threshold of 9000 copies/mL was associated with the VR at 12 months with an OR of 36.7 (95% CI 4.7-285.1). The threshold of 1700 copies/mL was associated with the VR at 12 months with an OR of 7.2 (95% CI 1.4-36.8).ConclusionsThere is quantifiable evidence that determining a mutational load threshold can be used to identify those patients on a first-line regimen containing rilpivirine who are at risk of virological failure. The clinical management of HIV-infected patients can be improved by evaluating the frequency of mutant variants at a threshold of
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- 2019
22. Impact of Human Immunodeficiency Virus Type 1 Minority Variants on the Virus Response to a Rilpivirine-Based First-line Regimen
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Raymond, Stéphanie, Nicot, Florence, Pallier, Coralie, Bellecave, Pantxika, Maillard, Anne, Trabaud, Mary Anne, Morand-Joubert, Laurence, Rodallec, Audrey, Amiel, Corinne, Mourez, Thomas, Bocket, Laurence, Beby-Defaux, Agnès, Bouvier-Alias, Magali, Lambert-Niclot, Sidonie, Charpentier, Charlotte, Malve, Brice, Mirand, Audrey, Dina, Julia, Le Guillou-Guillemette, Hélène, Marque-Juillet, Stéphanie, Signori-Schmuck, Anne, Barin, Francis, Si-Mohamed, Ali, Fenoel, Véronique Avettand, Roussel, Catherine, Calvez, Vincent, Saune, Karine, Marcelin, Anne Geneviève, Rodriguez, Christophe, Descamps, Diane, Izopet, Jacques, Lagier, E, Roussel, C, Le Guillou-Guillemette, H, Alloui, C, Bettinger, D, Pallier, C, Fleury, H, Reigadas, S, Bellecave, P, Recordon-Pinson, P, Payan, C, Vallet, S, Vabret, A, Dina, J, Henquell, C, Mirand, A, Bouvier-Alias, M, de Rougemont, A, Dos Santos, G, Morand, P, Signori-Schmuck, A, Bocket, L, Rogez, S, Andre, P, Tardy, JC, Trabaud, MA, Tamalet, C, Delamare, C, Montes, B, Schvoerer, E, Ferré, V, André-Garnier, E, Cottalorda, J, Guinard, J, Guiguon, A, Descamps, D, Brun-Vézinet, F, Charpentier, C, Visseaux, B, Peytavin, G, Krivine, A, Si-Mohamed, A, Avettand-Fenoel, V, Marcelin, AG, Calvez, V, Lambert-Niclot, S, Soulié, C, Wirden, M, Morand-Joubert, L, Delaugerre, C, Chaix, ML, Amiel, C, Schneider, V, Giraudeau, G, Defaux, A Beby-, Brodard, V, Maillard, A, Plantier, JC, Chaplain, C, Bourlet, T, Fafi-Kremer, S, Stoll-Keller, F, Schmitt, MP, Barth, H, Yerly, S, Poggi, C, Izopet, J, Raymond, S, and Barin, F
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Medical Microbiology ,Biomedical and Clinical Sciences ,Clinical Sciences ,Immunology ,Sexually Transmitted Infections ,Clinical Research ,Infectious Diseases ,Genetics ,Minority Health ,Antimicrobial Resistance ,HIV/AIDS ,2.1 Biological and endogenous factors ,Infection ,Good Health and Well Being ,Adult ,Drug Resistance ,Viral ,Female ,Genetic Variation ,HIV Infections ,HIV-1 ,Humans ,Male ,Mutation ,Rilpivirine ,Viral Load ,minority resistant variants ,rilpivirine ,first-line antiretroviral therapy ,ultra-deep sequencing ,French National Agency for Research on AIDS and Viral Hepatitis (ANRS) AC11 Resistance Study Group ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundMinority resistant variants of human immunodeficiency virus type 1 (HIV-1) could influence the virological response to treatment based on nonnucleoside reverse transcriptase inhibitors (NNRTIs). Data on minority rilpivirine-resistant variants are scarce. This study used next-generation sequencing (NGS) to identify patients harboring minority resistant variants to nucleos(t)ide reverse transcriptase inhibitors and NNRTIs and to assess their influence on the virological response (VR).MethodsAll the subjects, 541 HIV-1-infected patients started a first-line regimen containing rilpivirine. VR was defined as a HIV-1 RNA load 20% in 29% of samples. We identified 43 (8.8%) and 36 (7.4%) patients who harbored rilpivirine-resistant variants with a 1% sensitivity threshold according to the French National Agency for Research on AIDS and Viral Hepatitis and Stanford algorithms, respectively. The VR was 96.9% at month 12. Detection of minority rilpivirine resistant variants was not associated with virological failure (VF). Multivariate analysis indicated that VF at month 12 was associated with a CD4 count
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- 2018
23. Correction to: Preventing Respiratory Syncytial Virus in Children in France: A Narrative Review of the Importance of a Reinforced Partnership Between Parents, Healthcare Professionals, and Public Health Authorities
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Pinquier, Didier, Crépey, Pascal, Tissières, Pierre, Vabret, Astrid, Roze, Jean-Christophe, Dubos, François, Cahn-Sellem, Fabienne, Javouhey, Etienne, Cohen, Robert, and Weil-Olivier, Catherine
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- 2023
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24. Effect of Tenofovir Disoproxil Fumarate and Emtricitabine on nasopharyngeal SARS-CoV-2 viral load burden amongst outpatients with COVID-19: A pilot, randomized, open-label phase 2 trial
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Parienti, Jean-Jacques, Prazuck, Thierry, Peyro-Saint-Paul, Laure, Fournier, Anna, Valentin, Cécile, Brucato, Sylvie, Verdon, Renaud, Sève, Aymeric, Colin, Mathilda, Lesne, Fabien, Guinard, Jérome, Ar Gouilh, Meriadeg, Dina, Julia, Vabret, Astrid, and Hocqueloux, Laurent
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- 2021
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25. Cardiac remodelling in secondary tricuspid regurgitation: Should we look beyond the tricuspid annulus diameter?
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Guérin, Anne, Vabret, Elsa, Dreyfus, Julien, Lavie-Badie, Yoan, Sportouch, Catherine, Eicher, Jean-Christophe, Maréchaux, Sylvestre, Le Tourneau, Thierry, and Donal, Erwan
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- 2021
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26. Healthcare associated coronavirus disease 2019 among health care workers in Normandy, France: a multi-center study
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Allaire, Alexandra, Auclair, Valérie, Krug, Sophie Beuve, Borderan, Guy-Claude, Chauvin, Corine, Dargere, Sylvie, Degallaix, Dominique, Delhomme, Joël, Erouart, Stéphane, Hautemaniere, Alexis, Ionescu, Paul, Le Foulon, François-Xavier, Lefflot, Stéphanie, Lefol-Seillier, Elisabeth, Levallois, Marie-Line, Martel, Mélanie, Michon, Jocelyn, Olliver, Dominique, Thomas-hervieu, Aurélie, Vabret, Astrid, Vaucelle, Carole, Verdon, Renaud, Thibon, Pascal, Breton, Pierre, Mouet, Audrey, Bidon, Antoine, Haupais, François, Darrigan, Caroline, Gautier, Pauline, Letourneur, Thomas, Perillieux, Emeline, Seguineau, Charles, Thibon, Paul, Henry, Liliane, Ar Gouilh, Meriadeg, Borgey, France, and Le Hello, Simon
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- 2021
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27. Diagnostic virologique des infections respiratoires basses
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Pillet, S., Gueudin, M., Plantier, J.C., and Vabret, A.
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- 2021
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28. Lower access to kidney transplantation for women in France is not explained by comorbidities and social deprivation.
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Adoli, Latame Komla, Couchoud, Cécile, Chatelet, Valérie, Lobbedez, Thierry, Bayer, Florian, Vabret, Elsa, Jais, Jean-Philippe, Daugas, Eric, Vigneau, Cécile, and Bayat-Makoei, Sahar
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CHRONIC kidney failure ,SEX factors in disease ,KIDNEY transplantation ,GENDER inequality ,DIALYSIS (Chemistry) - Abstract
Background Access to kidney transplantation (KT) remains challenging for patients with end-stage kidney disease. This study assessed women's access to KT in France by considering comorbidities and neighbourhood social deprivation. Methods All incident patients 18–85 years old starting dialysis in France between 1 January 2017 and 31 December 2019 were included. Three outcomes were assessed: access to the KT waiting list after dialysis start, KT access after waitlisting and KT access after dialysis start. Cox and Fine–Gray models were used. Gender–European Deprivation Index and gender–age interactions were tested and analyses were performed among strata if required. Results A total of 29 395 patients were included (35% of women). After adjusting for social deprivation and comorbidities, women were less likely to be waitlisted at 1 year {adjusted hazard ratio [adjHR] 0.91 [95% confidence interval (CI) 0.87–0.96]} and 3 years [adjHR 0.87 (95% CI 0.84–0.91)] after dialysis initiation. This disparity concerned mainly women ≥60 years of age [adjHR 0.76 (95% CI 0.71–0.82) at 1 year and 0.75 (0.71–0.81) at 3 years]. Access to KT after 2 years of waitlisting was similar between genders. Access to KT was similar between genders at 3 years after dialysis start but decreased for women after 4 years [adjHR 0.93 (95% CI 0.88–0.99)] and longer [adjHR 0.90 (95% CI 0.85–0.96)] follow-up. Conclusions In France, women are less likely to be waitlisted and undergo KT. This is driven by the ≥60-year-old group and is not explained by comorbidities or social deprivation level. [ABSTRACT FROM AUTHOR]
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- 2024
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29. Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1
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Nicolas Vabret, Valérie Najburg, Alexander Solovyov, Ramya Gopal, Christopher McClain, Petr Šulc, Sreekumar Balan, Yannis Rahou, Guillaume Beauclair, Maxime Chazal, Hugo Varet, Rachel Legendre, Odile Sismeiro, Raul Y. Sanchez David, Lise Chauveau, Nolwenn Jouvenet, Martin Markowitz, Sylvie van der Werf, Olivier Schwartz, Frédéric Tangy, Nina Bhardwaj, Benjamin D. Greenbaum, and Anastassia V. Komarova
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Biological sciences ,Immunology ,Transcriptomics ,Science - Abstract
Summary: Pattern recognition receptors (PRRs) protect against microbial invasion by detecting specific molecular patterns found in pathogens and initiating an immune response. Although microbial-derived PRR ligands have been extensively characterized, the contribution and relevance of endogenous ligands to PRR activation remains overlooked. Here, we characterize the landscape of endogenous ligands that engage RIG-I-like receptors (RLRs) upon infection by different RNA viruses. In each infection, several RNAs transcribed by RNA polymerase III (Pol3) specifically engaged RLRs, particularly the family of Y RNAs. Sensing of Y RNAs was dependent on their mimicking of viral secondary structure and their 5′-triphosphate extremity. Further, we found that HIV-1 triggered a VPR-dependent downregulation of RNA triphosphatase DUSP11 in vitro and in vivo, inducing a transcriptome-wide change of cellular RNA 5′-triphosphorylation that licenses Y RNA immunogenicity. Overall, our work uncovers the contribution of endogenous RNAs to antiviral immunity and demonstrates the importance of this pathway in HIV-1 infection.
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- 2022
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30. Tumeurs frontières de l’ovaire. Recommandations pour la pratique clinique du CNGOF – Biopathologie des tumeurs frontières de l’ovaire
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Eymerit-Morin, C., Brun, J.L., Vabret, O., and Devouassoux-Shisheboran, M.
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- 2020
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31. Immunology of COVID-19: Current State of the Science
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Agrawal, Manasi, Aleynick, Mark, Belabed, Meriem, Brown, Matthew, Casanova-Acebes, Maria, Catalan, Jovani, Centa, Monica, Charap, Andrew, Chan, Andrew, Chen, Steven T., Chung, Jonathan, Bozkus, Cansu Cimen, Cody, Evan, Cossarini, Francesca, Dalla, Erica, Fernandez, Nicolas, Grout, John, Ruan, Dan Fu, Hamon, Pauline, Humblin, Etienne, Jha, Divya, Kodysh, Julia, Leader, Andrew, Lin, Matthew, Lindblad, Katherine, Lozano-Ojalvo, Daniel, Lubitz, Gabrielle, Magen, Assaf, Mahmood, Zafar, Martinez-Delgado, Gustavo, Mateus-Tique, Jaime, Meritt, Elliot, Moon, Chang, Noel, Justine, O’Donnell, Tim, Ota, Miyo, Plitt, Tamar, Pothula, Venu, Redes, Jamie, Reyes Torres, Ivan, Roberto, Mark, Sanchez-Paulete, Alfonso R., Shang, Joan, Schanoski, Alessandra Soares, Suprun, Maria, Tran, Michelle, Vaninov, Natalie, Wilk, C. Matthias, Aguirre-Ghiso, Julio, Bogunovic, Dusan, Cho, Judy, Faith, Jeremiah, Grasset, Emilie, Heeger, Peter, Kenigsberg, Ephraim, Krammer, Florian, Laserson, Uri, Vabret, Nicolas, Britton, Graham J., Gruber, Conor, Hegde, Samarth, Kim, Joel, Kuksin, Maria, Levantovsky, Rachel, Malle, Louise, Moreira, Alvaro, Park, Matthew D., Pia, Luisanna, Risson, Emma, Saffern, Miriam, Salomé, Bérengère, Esai Selvan, Myvizhi, Spindler, Matthew P., Tan, Jessica, van der Heide, Verena, Gregory, Jill K., Alexandropoulos, Konstantina, Bhardwaj, Nina, Brown, Brian D., Greenbaum, Benjamin, Gümüş, Zeynep H., Homann, Dirk, Horowitz, Amir, Kamphorst, Alice O., Curotto de Lafaille, Maria A., Mehandru, Saurabh, Merad, Miriam, and Samstein, Robert M.
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- 2020
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32. Short-term neuropsychological recovery in alcohol use disorder: A retrospective clinical study
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Maillard, Angéline, Poussier, Hélène, Boudehent, Céline, Lannuzel, Coralie, Vicente, Angel, Vabret, François, Cabe, Nicolas, and Pitel, Anne-Lise
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- 2020
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33. Qui sont ces patients en dialyse non inscrits sur liste d’attente de greffe rénale ?
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Vabret, Elsa, Vigneau, Cécile, Bayat, Sahar, Frimat, Luc, Monnet, Élisabeth, Hannedouche, Thierry, and Jacquelinet, Christian
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- 2020
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34. Phylogenetic variability of Human Metapneumovirus in patients with acute respiratory infections in Cameroon, 2011–2014
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Kenmoe, Sebastien, Vernet, Marie-Astrid, Penlap Beng, Véronique, Vabret, Astrid, and Njouom, Richard
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- 2020
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35. Evaluation de la trousse diagnostique IST multiplex EBX 051 Multifast STI Eurobio
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Schanen, C., primary, Testas, N., additional, Join-Lambert, O., additional, and Vabret, A., additional
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- 2024
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36. Protocol for the development of mRNA lipid nanoparticle vaccines and analysis of immunization efficiency in mice
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Karekar, Neha, primary, Reid Cahn, Ashley, additional, Morla-Folch, Judit, additional, Saffon, Alexis, additional, Ward, Ross W., additional, Ananthanarayanan, Aparna, additional, Teunissen, Abraham J.P., additional, Bhardwaj, Nina, additional, and Vabret, Nicolas, additional
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- 2024
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37. Unravelling the acute respiratory infection landscape: virus type, viral load, health status and coinfection do matter
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Petat, Hortense, primary, Corbet, Sandrine, additional, Leterrier, Bryce, additional, Vabret, Astrid, additional, and Ar Gouilh, Meriadeg, additional
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- 2024
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38. #2587 Survival and access to renal transplantation of patients with type 1 diabetes: a study from the REIN registry
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Elsa, Vabret, primary, Bayat, Sahar, additional, Lassalle, Mathilde, additional, Raffray, Maxime, additional, Foucher, Yohann, additional, and Vigneau, Cécile, additional
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- 2024
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39. From tuberous sclerosis complex to end stage renal disease: who are these patients?
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Vabret, Elsa, Couchoud, Cécile, Lassalle, Mathilde, and Vigneau, Cécile
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- 2021
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40. Fatal Measles Inclusion-Body Encephalitis in Adult with Untreated AIDS, France
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Christophe Rodriguez, Meriadeg Ar Gouilh, Nicolas Weiss, Sébastian Stroer, Karima Mokhtari, Danielle Seilhean, Bertrand Mathon, Vanessa Demontant, Melissa N’Debi, Guillaume Gricourt, Paul-Louis Woerther, Jean-Michel Pawlotsky, Karl Stefic, Julien Marlet, Pierre-François Dequin, Antoine Guillon, Valérie Pourcher, David Boutolleau, Astrid Vabret, and Sonia Burrel
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measles inclusion-body encephalitis ,MIBE ,HIV/AIDS and other retroviruses ,meningitis/encephalitis ,viruses ,brain biopsy ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We report a fatal case of measles inclusion-body encephalitis occurring in a woman from Romania with AIDS. After an extensive but unsuccessful diagnostic evaluation, a pan-pathogen shotgun metagenomic approach revealed a measles virus infection. We identified no mutations previously associated with neurovirulence.
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- 2020
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41. When a viral eruption hides another one: intrafamilial outbreak of parvovirus B19 and measles virus co-infections: case report
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Claire Grolhier, Charlotte Pronier, Arielle Belem, Julia Dina, Astrid Vabret, José-Hector Aranda Grau, Pierre Tattevin, and Vincent Thibault
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False positive serology ,Nosocomial ,Vaccine ,Case report ,Diagnosis ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Despite high overall population vaccine coverage, identified clusters of persons refraining from vaccination interfere with pursued measles elimination. Clinical diagnosis of measles is often obvious due to its typical rash. Yet, febrile rashes may occur during many viral infections. Misdiagnosis of a specific primary viral infection may have severe consequences, particularly in immunocompromised subjects or pregnant women. To our knowledge, this case presentation is the first description of a measles and parvovirus B19 coinfection outbreak. Analysis of this outbreak underlines rash diagnosis difficulties and potential serology interpretation pitfalls. This case report is helpful for the clinicians in the context of measles re-emergence and proposes several methods to improve the diagnosis approach. Case presentation We investigated an outbreak of rash in 6 out of 8 Traveler family members presenting to Rennes University Hospital (West of France). Anti-B19V and measles IgM/IgG antibodies were measured and detection of Parvovirus B19 and measles virus genomes were done on blood and/or respiratory samples. Virological investigations finally documented 6 cases of parvovirus B19 infections, including 4 associated with measles. Interestingly, in the four coinfection cases, the rash was typical of B19V primary infection for the two children but typical of measles for the two adults. Clinical diagnosis of rash may be misleading and thorough virological investigations may be required to avoid misdiagnosis. Conclusions This investigation first reports an intra-familial outbreak of MeV/B19V coinfections highlighting the high transmissibility of both viruses and the diagnostic challenges of dual rash-associated infections. This report also underlines the potential deleterious consequences of failure to identify measles cases, especially in a community with low vaccination coverage.
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- 2020
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42. 9 - Dendritic Cells
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Saxena, Mansi, Vabret, Nicolas, and Bhardwaj, Nina
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- 2025
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43. Cross-resistance to elvitegravir and dolutegravir in 502 patients failing on raltegravir: a French national study of raltegravir-experienced HIV-1-infected patients
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Fourati, Slim, Charpentier, Charlotte, Amiel, Corinne, Morand-Joubert, Laurence, Reigadas, Sandrine, Trabaud, Mary-Anne, Delaugerre, Constance, Nicot, Florence, Rodallec, Audrey, Maillard, Anne, Mirand, Audrey, Jeulin, Hélène, Montès, Brigitte, Barin, Francis, Bettinger, Dominique, Le Guillou-Guillemette, Hélène, Vallet, Sophie, Signori-Schmuck, Anne, Descamps, Diane, Calvez, Vincent, Flandre, Philippe, Marcelin, Anne-Genevieve, Lagier, E, Roussel, C, Le Guillou, H, Alloui, C, Bettinger, D, Pallier, C, Fleury, H, Reigadas, S, Bellecave, P, Recordon-Pinson, P, Payan, C, Vallet, S, Vabret, A, Henquell, C, Mirand, A, Bouvier-Alias, M, de Rougemont, A, Dos Santos, G, Morand, P, Signori-Schmuck, A, Bocket, L, Rogez, S, Andre, P, Tardy, JC, Trabaud, MA, Tamalet, C, Delamare, C, Montes, B, Schvoerer, E, Ferre, V, André-Garnier, E, Cottalorda, J, Guinard, J, Guiguon, A, Descamps, D, Brun-Vézinet, F, Charpentier, C, Visseaux, B, Peytavin, G, Krivine, A, Si-Mohamed, A, Avettand-Fenoel, V, Marcelin, AG, Calvez, V, Lambert-Niclot, S, Soulié, C, Wirden, M, Morand-Joubert, L, Delaugerre, C, Chaix, ML, Amiel, C, Schneider, V, Giraudeau, G, Brodard, V, Maillard, A, Plantier, JC, Chaplain, C, Bourlet, T, Fafi-Kremer, S, Stoll-Keller, F, Schmitt, MP, Barth, H, Yerly, S, Poggi, C, Izopet, J, Raymond, S, Barin, F, Chaillon, A, Marque-Juillet, S, Roque-Afonso, AM, Haïm-Boukobza, S, Flandre, P, Grudé, M, Assoumou, L, Costagliola, D, Allegre, T, Schmit, JL, and Chennebault, JM
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Medical Microbiology ,Biomedical and Clinical Sciences ,Infectious Diseases ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Infection ,Adult ,Anti-HIV Agents ,Drug Resistance ,Viral ,Female ,France ,HIV Infections ,HIV Integrase ,HIV Protease ,HIV Reverse Transcriptase ,HIV-1 ,Heterocyclic Compounds ,3-Ring ,Humans ,Male ,Middle Aged ,Mutant Proteins ,Oxazines ,Piperazines ,Pyridones ,Quinolones ,Raltegravir Potassium ,Sequence Analysis ,DNA ,integrase ,inhibitors ,mutations ,patterns ,ANRS AC11 Resistance Study Group ,Microbiology ,Pharmacology and Pharmaceutical Sciences ,Clinical sciences ,Pharmacology and pharmaceutical sciences - Abstract
ObjectivesThe objectives of this study were to determine the prevalence and patterns of resistance to integrase strand transfer inhibitors (INSTIs) in patients experiencing virological failure on raltegravir-based ART and the impact on susceptibility to INSTIs (raltegravir, elvitegravir and dolutegravir).Patients and methodsData were collected from 502 treatment-experienced patients failing a raltegravir-containing regimen in a multicentre study. Reverse transcriptase, protease and integrase were sequenced at failure for each patient. INSTI resistance-associated mutations investigated were those included in the last ANRS genotypic algorithm (v23).ResultsAmong the 502 patients, at failure, median baseline HIV-1 RNA (viral load) was 2.9 log10 copies/mL. Patients had been previously exposed to a median of five NRTIs, one NNRTI and three PIs. Seventy-one percent harboured HIV-1 subtype B and the most frequent non-B subtype was CRF02_AG (13.3%). The most frequent mutations observed were N155H/S (19.1%), Q148G/H/K/R (15.4%) and Y143C/G/H/R/S (6.7%). At failure, viruses were considered as fully susceptible to all INSTIs in 61.0% of cases, whilst 38.6% were considered as resistant to raltegravir, 34.9% to elvitegravir and 13.9% to dolutegravir. In the case of resistance to raltegravir, viruses were considered as susceptible to elvitegravir in 11% and to dolutegravir in 64% of cases. High HIV-1 viral load at failure (P
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- 2015
44. Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma
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Soulie, C, Descamps, D, Grude, M, Schneider, V, Trabaud, M-A, Morand-Joubert, L, Delaugerre, C, Montes, B, Barin, F, Ferre, V, Raymond, S, Jeulin, H, Alloui, C, Yerly, S, Pallier, C, Reigadas, S, Signori-Schmuck, A, Guigon, A, Fafi-Kremer, S, Haim-Boukobza, S, Mirand, A, Maillard, A, Vallet, S, Roussel, C, Assoumou, L, Calvez, V, Flandre, P, Marcelin, A-G, Lagier, E, Le Guillou, H, Bettinger, D, Fleury, H, Bellecave, P, Recordon-Pinson, P, Payan, C, Vabret, A, Henquell, C, Bouvier-Alias, M, de Rougemont, A, Dos Santos, G, Morand, P, Bocket, L, Rogez, S, Andre, P, Tardy, JC, Trabaud, MA, Tamalet, C, Delamare, C, Schvoerer, E, Andre-Garnier, E, Cottalorda, J, Guinard, J, Guiguon, A, Brun-Vezinet, F, Charpentier, C, Visseaux, B, Peytavin, G, Krivine, A, Si-Mohamed, A, Avettand-Fenoel, V, Marcelin, AG, Lambert-Niclot, S, Wirden, M, Chaix, ML, Amiel, C, Giraudeau, G, Brodard, V, Plantier, JC, Chaplain, C, Bourlet, T, Stoll-Keller, F, Schmitt, MP, Barth, H, Poggi, C, Izopet, J, Chaillon, A, Marque-Juillet, S, and Roque-Afonso, AM
- Subjects
Medical Microbiology ,Biomedical and Clinical Sciences ,Clinical Sciences ,HIV/AIDS ,Infectious Diseases ,Antimicrobial Resistance ,Genetics ,Clinical Research ,Neurosciences ,Infection ,Adult ,Anti-HIV Agents ,Antiretroviral Therapy ,Highly Active ,Drug Resistance ,Viral ,Female ,Genotype ,HIV Infections ,HIV-1 ,Humans ,Male ,Microbial Sensitivity Tests ,Middle Aged ,Mutation ,Nervous System Diseases ,Viral Load ,ANRS Resistance AC11 Group ,ARV ,CSF ,HIV ,resistance ,Microbiology ,Pharmacology and Pharmaceutical Sciences ,Clinical sciences ,Pharmacology and pharmaceutical sciences - Abstract
OBJECTIVES: The neurological disorders in HIV-1-infected patients remain prevalent. The HIV-1 resistance in plasma and CSF was compared in patients with neurological disorders in a multicentre study. METHODS: Blood and CSF samples were collected at time of neurological disorders for 244 patients. The viral loads were >50 copies/mL in both compartments and bulk genotypic tests were realized. RESULTS: On 244 patients, 89 and 155 were antiretroviral (ARV) naive and ARV treated, respectively. In ARV-naive patients, detection of mutations in CSF and not in plasma were reported for the reverse transcriptase (RT) gene in 2/89 patients (2.2%) and for the protease gene in 1/89 patients (1.1%). In ARV-treated patients, 19/152 (12.5%) patients had HIV-1 mutations only in the CSF for the RT gene and 30/151 (19.8%) for the protease gene. Two mutations appeared statistically more prevalent in the CSF than in plasma: M41L (P=0.0455) and T215Y (P=0.0455). CONCLUSIONS: In most cases, resistance mutations were present and similar in both studied compartments. However, in 3.4% of ARV-naive and 8.8% of ARV-treated patients, the virus was more resistant in CSF than in plasma. These results support the need for genotypic resistance testing when lumbar puncture is performed.
- Published
- 2015
45. The Design and Implementation of the ECOVIR Project: A Primary Health Care Surveillance System to Strengthen Co-Detection of Respiratory Viruses in Normandy
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Hortense Petat, Matthieu Schuers, Sandrine Corbet, Xavier Humbert, François Le Bas, Christophe Marguet, Lucille Pellerin, Andry Rabiaza, Astrid Vabret, and Meriadeg Ar Gouilh
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primary care /hospital coordination ,acute respiratory infections ,biobank ,Biology (General) ,QH301-705.5 - Abstract
Acute respiratory infections (ARIs) need to be better understood and treated, as they are critical to public health, especially during crises such as the SARS-CoV2 pandemic. These are the most abundant infections in the general population and are seen primarily in primary care by general practitioners (GPs). Many different viruses are involved, according to epidemic variations. Viral co-detections account for a significant proportion of ARIs in hospital cohorts. The objective of the ECOVIR cohort was to study viral co-detections by setting up a biobank of respiratory tract samples from patients consulting their general practitioner for ARI symptoms. We report here on the course of the study: the design, the conduct, and the difficulties encountered. ECOVIR (Etude des CO-detections VIrales dans les prélèvements Respiratoires) was a prospective, multicenter cohort conducted in France during two epidemic seasons (2018–2019 and 2019–2020). We recruited GPs. Each GP investigator (GPI) saw patients weekly for examination, clinical data collection, and nasopharyngeal swabbing. Each sample was sent to the virology unit for biobanking and molecular analysis. Clinical and sociodemographic data were collected 7 days after inclusion. ECOVIR involved 36 GPIs. Patients with symptoms of an ARI were included (n = 685). The median number of inclusions was 16 patients per GPI over both seasons (IC25–75% [4.75; 27]). Patients aged 18 to 64 years were the most numerous (57%), followed by children (30%), and the elderly (13% over 65 years). This age distribution emphasizes the young adult and middle-aged population. Residents participated in the project and called patients on day 7 to obtain clinical and sociodemographic data. Our study triggered the creation of an original network, which plans to establish a functional link between research and primary health care. Primary care is unfortunately poorly represented in research protocols, particularly in respiratory infections, even though it is a cornerstone of our French health care system, as demonstrated every day in this period of crisis.
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- 2022
- Full Text
- View/download PDF
46. p53 regulates CD46 expression and measles virus infection in myeloma cells
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Lok, Anne, Descamps, Geraldine, Tessoulin, Benoit, Chiron, David, Eveillard, Marion, Godon, Catherine, Le Bris, Yannick, Vabret, Astrid, Bellanger, Celine, Maillet, Laurent, Barillé-Nion, Sophie, Gregoire, Marc, Fonteneau, Jean-François, Le Gouill, Steven, Moreau, Philippe, Tangy, Frederic, Amiot, Martine, Moreau-Aubry, Agnes, and Pellat-Deceunynck, Catherine
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- 2018
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47. Atteintes cognitives liées au trouble de l’usage d’alcool : rétablir l’équilibre ?
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Cabé, Nicolas, Laniepce, Alice, Boudehent, Céline, Pitel, Anne-Lise, and Vabret, François
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- 2018
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48. Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes
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Solovyov, Alexander, Vabret, Nicolas, Arora, Kshitij S., Snyder, Alexandra, Funt, Samuel A., Bajorin, Dean F., Rosenberg, Jonathan E., Bhardwaj, Nina, Ting, David T., and Greenbaum, Benjamin D.
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- 2018
- Full Text
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49. SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world
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Ar Gouilh, Meriadeg, Puechmaille, Sébastien J., Diancourt, Laure, Vandenbogaert, Mathias, Serra-Cobo, Jordi, Lopez Roïg, Marc, Brown, Paul, Moutou, François, Caro, Valérie, Vabret, Astrid, and Manuguerra, Jean-Claude
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- 2018
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50. Use of LoopDeelab during the COVID-19 Pandemic: An Innovative Device for Field Diagnosis
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Nefert Candace Dossou, Isidore Gaubert, Elodie Maille, Remy Morello, Renaud Cassier, Cécile Schanen, Jean-Jacques Dutheil, Louis-Marie Rocque, Astrid Vabret, and Meriadeg Ar Gouilh
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RAPID COVID ,Loopdeetect ,Loopdeelab ,COVID-19 ,SARS-CoV-2 ,LAMP PCR ,Microbiology ,QR1-502 - Abstract
Rapid and accurate diagnosis of SARS-CoV-2 infection is essential for the management of the COVID-19 outbreak. RT-LAMP LoopDeetect COVID-19 (LoopDeescience, France) is a rapid molecular diagnostic tool which operates with the LoopDeelab (LoopDeescience, France) device. RAPID COVID is a prospective double-blind research protocol which was conducted to evaluate the concordance between Loopdeetect COVID-19 and RT-PCR Allplex 2019 n-Cov (Seegene, Korea). Between 11 May 2020 and 14 June 2021, a total of 1122 nasopharyngeal swab specimens were collected, of which 741 were finally analysed. There were 32 “positive” and “indeterminate” RT-PCR results. The intrinsic performances of Loopdeetect COVID-19 are equivalent to other commercial RT-LAMP PCR COVID-19 kits, with a sensitivity and specificity of 69.23% [CI 95%: 48.21–85.67] and 100% [CI 95%: 99.58–100.00], respectively. To the best of our knowledge, LoopDeelab is the only LAMP PCR diagnostic device allowing such a fast and reliable analysis with low-cost equipment; this makes it a new and innovative technology, designed for field use. This device being portable, the development of other detection kits will be useful for the management of epidemics with a high attack rate and would facilitate the rapid application of health measures.
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- 2022
- Full Text
- View/download PDF
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