1. Splicing Functional Assays of CHEK2 splice-site variants identified in the BRIDGES project
- Author
-
European Commission, Ministerio de Ciencia e Innovación (España), Instituto de Salud Carlos III, Junta de Castilla y León, Fundación Científica Asociación Española Contra el Cáncer, Universidad de Valladolid, Sanoguera-Miralles, Lara [0000-0002-5548-7114], Bueno-Martínez, Elena [0000-0003-4888-2885], Valenzuela-Palomo, Alberto [0000-0002-6047-5986], Velasco, Eladio [0000-0002-9682-5589], Sanoguera-Miralles, Lara, Bueno-Martínez, Elena, Valenzuela-Palomo, Alberto, Velasco, Eladio, European Commission, Ministerio de Ciencia e Innovación (España), Instituto de Salud Carlos III, Junta de Castilla y León, Fundación Científica Asociación Española Contra el Cáncer, Universidad de Valladolid, Sanoguera-Miralles, Lara [0000-0002-5548-7114], Bueno-Martínez, Elena [0000-0003-4888-2885], Valenzuela-Palomo, Alberto [0000-0002-6047-5986], Velasco, Eladio [0000-0002-9682-5589], Sanoguera-Miralles, Lara, Bueno-Martínez, Elena, Valenzuela-Palomo, Alberto, and Velasco, Eladio
- Abstract
This dataset corresponds to a comprehensive study of splice-site variants of the breast cancer susceptibility gene CHEK2. Variant data have been obtained from the large-scale sequencing project BRIDGES that sequenced 34 genes in 113,000 women. A set of 128 CHEK2 variants at the intron-exon boundaries were identified, 52 of which were predicted spliceogenic. These were introduced into the three minigene constructs by site-directed mutagenesis and tested in MCF-7 cells. Forty-six variants impaired splicing, 26 of which were classified as pathogenic/likely pathogenic variants according to ACMG/AMP-based guidelines, so carrier patients and families may benefit from tailored prevention protocols and personalized therapies.
- Published
- 2023