44 results on '"Valiokas, R."'
Search Results
2. Detection of Blue Light by Self-Assembled Monolayer of Dipolar Molecules
- Author
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Neilands, O., Kirichenko, N., Muzikante, I., Fonavs, E., Gerca, L., Jursenas, S., Valiokas, R., Karpicz, R., Valkunas, L., Shur, Michael S., editor, and Žukauskas, Artūras, editor
- Published
- 2004
- Full Text
- View/download PDF
3. Molecular orientation in helical and all-trans oligo(ethylene glycol)-terminated assemblies on gold: Results of ab initio modeling
- Author
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Malysheva, L., Onipko, A., Valiokas, R., and Liedberg, B.
- Subjects
Ethylene glycol -- Chemical properties ,Gold compounds -- Chemical properties ,Density functionals -- Usage ,Chemicals, plastics and rubber industries - Abstract
The structural properties of all-trans and helical oligo(ethylene glycol) (OEG)-terminated and amide-linked alkanethiols on gold are examined by means of ab initio modeling. Optimized geometry of the molecular constituents, characteristic vibration frequencies, and transition dipole moments are obtained using density-functional theory methods with gradient corrections.
- Published
- 2005
4. First-principles modeling of oligo(ethylene glycol)-terminated and amide group containing alkanethiolates
- Author
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Malysheva, L., Onipko, A., Valiokas, R., and Liedberg, B.
- Published
- 2005
- Full Text
- View/download PDF
5. Force Measurements between Semifluorinated Thiolate Self-Assembled Monolayers: Long-Range Hydrophobic Interactions and Surface Charge
- Author
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Ederth, T., Tamada, K., Claesson, P.M., Valiokas, R., Colorado, R., Jr., Graupe, M., Shmakova, O.E., and Lee, T.R.
- Published
- 2001
- Full Text
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6. Extracellular matrix mimetics by crosslinked peptide hydrogels: application to neural 3D cell cultures
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Eimont, R., Vailionytė, A., Cėpla, V., Druceikaitė, K., Inokaitis, H., Dabkevičiūtė, L., Sukackaitė, E., Masilionis, I., Ulčinas, A., Samanta, Ayan, Valiokas, R., Jekabsone, A., Eimont, R., Vailionytė, A., Cėpla, V., Druceikaitė, K., Inokaitis, H., Dabkevičiūtė, L., Sukackaitė, E., Masilionis, I., Ulčinas, A., Samanta, Ayan, Valiokas, R., and Jekabsone, A.
- Abstract
Self-supporting, shapeable hydrogels that consist of self-assembling synthetic peptides mimic the structural blocks of the extracellular matrix (ECM). Although they have been developed for regenerative medicine purposes, with a potential of grafting into patients without transplantation from organ donors, this class of materials are attractive as scaffolds for advanced cell culture/ in vitro tissue applications. In the present study, we have combined a series of peptides with functional motives (collagen, fibronectin, and laminin-like) for promoting granule layer-like organization of primary cerebellar cells and for controlling the cell attachment, neuritogenesis, cluster size and organization. We show that the micro/nanofabricated hydrogel scaffolds are applicable as multiwell plate inserts helping to analyse cell migration, differentiation, proliferation, adhesion, ultimately forming organotypic cell culture and artificial tissue structures.
- Published
- 2018
7. Protein adsorption to oligo (Ethylene Glycol) self assembled monolayers with amide linkage experiments with fibrinogen, heparinised plasma and serum
- Author
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Benesch, Johan, Svedhem, S., Svensson, S. C., Valiokas, R., Liedberg, B., Tengvall, P., and Universidade do Minho
- Subjects
Serum ,Complement ,Fibrinogen ,Heparinized plasma ,Self-assembled monolayers ,Protein adsorption ,Oligo(ethylene glycol) - Abstract
Low protein adsorption is believed advantageous for blood-contacting materials and ethylene glycols (EG)-based polymeric compounds are often attached to surfaces for this purpose. In the present study, the adsorption of brinogen, serum, and plasma were studied by ellipsometry on a series of well-de ned oligo(EG) terminated alkane-thiols self-assembled on gold. The layers were prepared with compounds of the general structure HS-(CH2)15-CONH-EGn, where n D 2, 4, and 6. Methoxy-terminated tri(EG) undecanethiol and hydroxyl-terminated hexadecanethiol self-assembled monolayers (SAMs) were used as references. The results clearly demonstrate that the adsorption depends on the experimental conditions with small amounts of brinogen adsorbing from a single protein solution, but larger amounts of proteins from serum and plasma. The adsorption of brinogen and blood plasma decreased with an increasing number of EG repeats and was temperature-dependent. Signi cantly less serum adsorbed to methoxy tri(EG) than to hexa(EG) and more proteins remained on the latter surface after incubation in a sodiumdodecyl sulfate (SDS) solution, indicating a looser protein binding to the methoxy-terminated surface. All surfaces adsorbed complement factor 3 (C3) from serum and plasma, although no surfacemediated complement activationwas observed. The present study points to the importance of a careful choice of the proteinmodel system before general statements regardingthe protein repellantproperties of potential surfaces can be made.
- Published
- 2001
8. Self-assembled monolayers containing terminal mono-, bis-, and tris-nitrilotriacetic acid groups : Characterization and application
- Author
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Valiokas, R., Kienkar, G., Tinazli, A., Reichel, A., Tampe, R., Piehler, J., Liedberg, Bo, Valiokas, R., Kienkar, G., Tinazli, A., Reichel, A., Tampe, R., Piehler, J., and Liedberg, Bo
- Abstract
We have undertaken a structural and functional study of self-assembled monolayers (SAMs) formed on gold from a series of alkylthiol compounds containing terminal multivalent chelators (MCHs) composed of mono-, bis-, and tris-nitrilotriacetic acid (NTA) moieties. SAMs were formed from single-component solutions of the mono-, bis-, and tris-NTA compounds, as well as from mixtures with a tri(ethylene glycol)-terminated alkylthiol (EG3). Contact angle goniometry, null ellipsometry, and infrared spectroscopy were used to explore the structural characteristics of the MCH SAMs. Ellipsometric measurements show that the amount of the MCH groups on surfaces increases with increasing mol % of the MCH thiols in the loading solution up to about 80 mol %. We also conclude that mixed SAMs, prepared in the solution composition regime 0-30 mol % of the MCH thiols, consist of a densely packed alkyl layer, an amorphous ethylene glycol layer, and an outermost layer of MCH groups exposed toward the ambient. Above 30 mol %, a significant degree of disorder is observed in the SAMs. Finally, functional evaluation of the three MCH SAMs prepared at 0-30 mol% reveals a consistent increase in binding strengdi with increasing multivalency. The tris-NTA SAM, in particular, is enabled for stable and functional immobilization of a His6-tagged extracellular receptor subunit, even at low chelator surface concentrations, which makes it suitable for applications when a low surface density of capturing sites is desirable, e.g., in kinetic analyses. © 2008 American Chemical Society.
- Published
- 2008
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9. Protein-Protein Interactions in Reversibly Assembled Nanopatterns
- Author
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Rakickas, T., Gavutis, M., Reichel, A., Piehler, J., Liedberg, Bo, Valiokas, R., Rakickas, T., Gavutis, M., Reichel, A., Piehler, J., Liedberg, Bo, and Valiokas, R.
- Abstract
We describe herein a platform to study protein-protein interactions and to form functional protein complexes in nanoscopic surface domains. For this purpose, we employed multivalent chelator (MCh) templates, which were fabricated in a stepwise procedure combining dip-pen nanolithography (DPN) and molecular recognition-directed assembly. First, we demonstrated that an atomic force microscope (AFM) tip inked with an oligo(ethylene glycol) (OEG) disulfide compound bearing terminal biotin groups can be used to generate biotin patterns on gold achieving line widths below 100 nm, a generic platform for fabrication of functional nanostructures via the highly specific biotin-streptavidin recognition. Subsequently, we converted such biotin/streptavidin patterns into functional MCh patterns for reversible assembly of histidine- tagged (His-tagged) proteins via the attachment of a tris-nitriloacetic acid (trisNTA) biotin derivative. Fluorescence microscopy confirmed reversible immobilization of the receptor subunit ifnar2-His10 and its interaction with interferon-a2 labeled with fluorescent quantum dots in a 7 × 7 dot array consisting of trisNTA spots with a diameter of ~230 nm. Moreover, we carried out characterization of the specificity, stability, and reversibility as well as quantitative real-time analysis of protein-protein interactions at the fabricated nanopatterns by imaging surface plasmon resonance. Our work offers a route for construction and analysis of functional protein-based nanoarchitectures. © 2008 American Chemical Society.
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- 2008
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10. Force measurements between semifluorinated thiolate self-assembled monolayers : Long-range hydrophobic interactions and surface charge
- Author
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Ederth, Thomas, Tamada, K., Claesson, Per, Valiokas, R., Colorado, R., Graupe, M., Shmakova, O. E., Lee, T. R., Ederth, Thomas, Tamada, K., Claesson, Per, Valiokas, R., Colorado, R., Graupe, M., Shmakova, O. E., and Lee, T. R.
- Abstract
Long-range interactions between self-assembled monolayers (SAMs) of semifluorinated alkanethiols have been studied by direct force measurements in water and aqueous NaCl solutions. SAMs prepared from three different thiols, with identical fluorinated head groups but varying hydrocarbon spacer lengths, were investigated: CF3(CF2)(9)(CH2)(x)SH, where x = 2, 11, or 17. Force measurements show that the interactions in water and electrolyte solutions are composed of both double-layer interactions emerging from what appears to be charges adsorbed onto the surfaces and long-range "hydrophobic" attractions, in excess of the expected van der Waals forces. The three investigated thiols produce similar results in force measurements, though the contact angles with water are slightly different, The "hydrophobic" attraction has the form of step-like attractive discontinuities in the force profiles at separations ranging from 20 to 40 nm, caused by bridging of microscopic bubbles residing at the surfaces, The shape or range of these discontinuities are not significantly affected by replacement of the water with either 1 mM or 1 M NaCl solutions. The origin of the charges causing the electrostatic double-layer interaction is unclear, but some possible causes are discussed., QC 20100915
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- 2001
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11. Tunable phases of oligo(ethylene glycol) in self-assembled monolayers and their use as support for lipid bilayers.
- Author
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Valiokas, R, Svedhem, S, Ostblom, M, Gelius, U, Svensson, SCT, Liedberg, B, Valiokas, R, Svedhem, S, Ostblom, M, Gelius, U, Svensson, SCT, and Liedberg, B
- Abstract
Addresses: Linkoping Univ, Dept Phys & Measurement Technol, Grad Sch Forum Scientum, S-58183 Linkoping, Sweden. Univ Uppsala, Dept Phys, Uppsala, Sweden.
- Published
- 2000
12. Atomic Force Microscopy of Self-Assembled Nanostructures of TPPS4 on SAM Substrates
- Author
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Augulis, R., primary, Valiokas, R., additional, Liedberg, B., additional, and Rotomskis, R., additional
- Published
- 2004
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13. Conformation-dependent Molecular Orientation Deduced from First-principles Modeling of Oligo(ethylene glycol)-terminated and Amide Group Containing Alkanethiolates Self-assembled on Gold.
- Author
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Malysheva, L., Onipko, A., Valiokas, R., and Liedberg, B.
- Subjects
ETHYLENE glycol ,GOLD ,MOLECULAR self-assembly ,AMIDES ,DIPOLE moments ,MOLECULES - Abstract
We report orientation angles for the alkyl chain, amide group, and oligo(ethylene glycol) (OEG) portion within self-assembled monolayers (SAMs) of OEG-terminated and amide containing alkanethiolates which, depending on the OEG length and substrate temperature, display unique conformations — all-trans or helical. Optimized geometries of the molecular constituents, characteristic vibration frequencies and transition dipole moments are obtained by using DFT methods with gradient corrections. These ab initio data are subsequently used to simulate infrared reflection-absorption (RA) spectra associated with different conformations and orientations. The obtained results have generated a deeper knowledge of the internal SAM structure, which is crucial for understanding phase and folding characteristics, interaction with water and ultimately the protein repellent properties of OEG-containing SAMs. © 2005 American Institute of Physics [ABSTRACT FROM AUTHOR]
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- 2005
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14. Structural Characterization of Microcontact Printed Arrays of Hexa(ethylene glycol)-Terminated Alkanethiols on Gold
- Author
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Zhou, Y., Valiokas, R., and Liedberg, B.
- Abstract
This paper reports on the structural characteristics of microcontact printed oligo(ethylene glycol)-terminated alkanethiol layers, HS(CH
2 )15 CONH−(CH2 CH2 O)6 −H (hereafter EG6 ), on gold. Microwetting, contact angle goniometry, imaging null ellipsometry, and infrared reflection−absorption spectroscopy (IRAS) are used to characterize the printed EG6 layers, and the quality of these layers in terms of layer thickness and the crystallinity of the alkyl and ethylene glycol portions is compared with data obtained from analogous layers prepared by solution self-assembly. The outcome of the printing process is critically dependent on the experimental parameters used to prepare the patterns. It is found that high quality layers, consisting of densely packed all-trans alkyl chains terminated with relatively helical hexa(ethylene glycol) tails, are formed by inking the poly(dimethylsiloxane) (PDMS) stamp with a 1 mM EG6 solution and contacting it with gold for 15 min. The homogeneity of printed layers is not as good as the homogeneity of those prepared from solution under similar conditions, most likely because of simultaneous transfer of low molecular weight residues from the PDMS stamp. These residues, however, can be easily removed upon ultrasonication in ethanol without affecting the quality of the printed layer. Further on, the microscopic square-shaped bare gold patterns formed after microcontact printing (μCP) are subsequently filled with 16-hexadecanoic acid (hereafter THA) or HS(CH2 )15 CONH−(CH2 CH2 O)6 −COOH (hereafter EG6 COOH) to provide a microarray platform for further covalent attachment of biomolecules. Well-defined structures in terms of wettability contrast, sharpness, and height differences between the printed and back-filled areas are confirmed by imaging null ellipsometry and microscopic wetting.- Published
- 2004
15. Atomic Force Microscopy of Self-Assembled Nanostructures of TPPS4 on SAM Substrates
- Author
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Augulis, R., Valiokas, R., Liedberg, B., and Rotomskis, R.
- Abstract
The adsorption of organic molecules on solid surfaces is one of the fundamental processes for the development of molecular-based nanodevices. Here we focus on the adsorption and ordering of the TPPS
4 -based J-aggregates on silicon and gold as well as on self-assembled monolayer (SAM) surfaces. The SAMs used for the experiments were based on the chemisorption of thiol containing compounds onto gold. Long ω-substituted alkanethiols are spontaneously assembled on gold to form highly ordered and densely packed layers with controllable chemical and physical properties. TPPS4 J-aggregates were dispersed on SAM surfaces, and on plain gold and silicon substrates for comparison. The dimensions of aggregates, measured by means of atomic force microscopy, varied depending on the type of substrate. Long stripe-like aggregates were flattened on the substrate surface, and the height and width of aggregates highly correlated with the polarity of surface groups. For example, the J-aggregates were narrower on hydrophobic substrates (with non-polar groups) and wider on hydrophilic substrates (with polar groups). These observations support the hypothesis, that TPPS4 forms .soft. cylindrical aggregates, that appear flattened on the substrate.- Published
- 2004
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16. Thermal Stability of Self-Assembled Monolayers: Influence of Lateral Hydrogen Bonding
- Author
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Valiokas, R., Ostblom, M., Svedhem, S., Svensson, S. C. T., and Liedberg, B.
- Abstract
Temperature-programmed desorption (TPD) of self-assembled monolayers (SAMs) on gold is investigated by using in parallel mass spectrometry (MS) and infrared reflection−absorption spectroscopy (IRAS). Monolayers formed by HS(CH
2 )n −OH (n = 18, 22) and HS(CH 2 )15 −CONH−(CH2 CH2 O)−H (EG1 ) are compared to reveal the influence of specifically introduced hydrogen-bonding groups on their thermal stability. The overall desorption process of the above molecules is found to occur in two main steps; a disordering of the alkyl chains followed by a complex series of decomposition/desorption reactions. The final step of the process involves desorption of sulfur from different chemisorption states. The amide-group-containing SAM, which is stabilized by lateral hydrogen bonds, displays a substantial delay of the alkyl chain disordering by about 50 K, as compared to the linear chain alcohols HS(CH2 )n −OH. Moreover, the decomposition of the alkyls and the onset of sulfur desorption occur at a temperature that is higher by approximately 25 K as compared to the HS(CH 2 )18 −OH SAM. The desorption process is also studied for two oligo(ethylene glycol)-terminated SAMs, HS(CH2 )15 −X−(CH2 CH2 O)4 −H (EG4 -SAMs), where X is −CONH− and −COO− linking groups. In addition to the molecular chain disordering, the decomposition/desorption process of the EG4 -SAMs occurs in two steps. The first is associated with the loss of the oligomer portion and the second with the desorption of the alkylthiolate part of the molecule. Our study points out that lateral hydrogen bonding, introduced via amide groups, is a convenient way to improve the thermal stability of alkanthiolate SAMs.- Published
- 2002
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17. Synthesis and Self-Assembly of Globotriose Derivatives: A Model System for Studies of Carbohydrate−Protein Interactions
- Author
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Svedhem, S., Ohberg, L., Borrelli, S., Valiokas, R., Andersson, M., Oscarson, S., Svensson, S. C. T., Liedberg, B., and Konradsson, P.
- Abstract
Self-assembled monolayers (SAMs) on gold exposing α-
d -Galp-(1→4)-β-d -Galp-(1→4)-β-d -Glcp (globotriose) are described. A synthetic pathway for the preparation of the bioactive carbohydrate globotriose coupled directly to bis(16-hydroxyhexadecanyl) disulfide ((HOC16 H32 S)2 ), as well as via tetra- or di(ethylene glycol) spacers, was developed. The SAMs were characterized by ellipsometry, contact angle goniometry, infrared reflection−absorption spectroscopy, and by their interactions with monoclonal antibodies. The ellipsometry measurements of mixed SAMs revealed thicknesses between 22 and 40 Å, depending on the ratio between carbohydrate and non-carbohydrate disulfides in the preparation solution. When the solution contained 10% or more of the carbohydrate adsorbate, the modified gold substrates displayed total wetting. Infrared reflection−absorption spectroscopy conferred well-ordered SAMs with a high degree of crystallinity. Furthermore, two monoclonal antibodies (IgM, MAHI 419 and IgG, MAHI 5) showed different affinity for mixed SAMs depending on the fraction and the structure of the carbohydrate component used (globotriose or globotriose tetra(ethylene glycol)), with the largest amount of protein bound for MAHI 419 at 1−10% of surface carbohydrate. These results demonstrate the usefulness of the SAM approach to explore molecular details such as the effect of a spacer or antigen distribution on antibody interactions at interfaces.- Published
- 2002
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18. Influence of Specific Intermolecular Interactions on the Self-Assembly and Phase Behavior of Oligo(Ethylene Glycol)-Terminated Alkanethiolates on Gold
- Author
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Valiokas, R., Svedhem, S., Ostblom, M., Svensson, S. C. T., and Liedberg, B.
- Abstract
A comparative study of the self-assembly and phase behavior of seven different oligo(ethylene glycol) (OEG)-terminated alkanethiols on polycrystalline gold surfaces is presented. The general structure of the compounds is HS(CH
2 )m -X-EG n , where m = 11, 15; n = 2, 4, 6, and the linkages X are amide (−CONH−), ester (−COO−), or ether (−O−) groups. The amide and ester groups give rise to the intermolecular hydrogen bonding and dipole−dipole interactions, respectively, whereas the ether lacks specific interactions. The results from contact angle goniometry, null ellipsometry, and infrared reflection−absorption spectroscopy (IRAS) indicate that the intermolecular interactions can be partly used to control the conformation and order of the OEG portion of the self-assembled monolayers (SAMs). It is shown that the lateral hydrogen bonding stabilizes the all-trans conformation of the EG 4 tails in the SAMs. Further on, the mechanism behind the thermal phase behavior of the OEG SAMs is investigated using temperature-programmed IRAS in ultrahigh vacuum. In the present study we show that the earlier reported helix-to-all-trans conformational transition at 60 °C in the SAM of HS(CH2 )15 CONH-EG6 (Valiokas, R.; Östblom, M.; Svedhem, S.; Svensson, S. C. T.; Liedberg, B. J. Phys. Chem.2000 , 104, 7565−7569.) is a result of the particular molecular design of the SAMs through the specifically built-in lateral hydrogen bonds. A shortening of the alkyl chain to 11 methylenes has no effect on the amide-EG6 phase behavior. Contrary, the ester- and ether- containing SAMs undergo a melting type of transitions at 52 and 68 °C, respectively, similar to that observed for poly(ethylene glycol).- Published
- 2001
19. Temperature-Driven Phase Transitions in Oligo(ethylene glycol)-terminated Self-Assembled Monolayers
- Author
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Valiokas, R., Ostblom, M., Svedhem, S., Svensson, S. C. T., and Liedberg, B.
- Abstract
This letter explores the phase behavior of oligo(ethylene glycol) self-assembled monolayers using temperature-programmed infrared reflection absorption spectroscopy. The monolayers are formed by self-assembly of hexa(ethylene glycol) (EG
6 ) and tetra(ethylene glycol) (EG4 )-terminated and amide group containing alkanethiols on polycrystalline gold. The ethylene glycol portions of the two monolayers are known to exist in two different conformations at room temperature: EG6 in helical and EG4 in all-trans (zigzag). The helical phase of the EG6 gradually diminishes upon increasing the temperature and a pronounced conformational transition occurs around 60 °C, leading to a rapidly increasing population of all-trans conformers along the EG6 chain. The EG4 SAM exhibits a much simpler phase behavior. The oligomer conformation is marginally affected upon increasing the temperature to 75 °C, displaying the dominating all-trans phase, which possibly coexists with a small fraction of gauche-rich (disordered) regions. The reported conformational changes are reversible upon returning to 20 °C after stepwise heating to 70 °C.- Published
- 2000
20. A high-density poly(ethylene glycol) polymer brush for immobilization on glass-type surfaces
- Author
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Piehler, J., Brecht, A., Valiokas, R., Liedberg, B., and Gauglitz, G.
- Published
- 2000
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21. Self-Assembled Monolayers of Oligo(ethylene glycol)-Terminated and Amide Group Containing Alkanethiolates on Gold
- Author
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Valiokas, R., Svedhem, S., Svensson, S. C. T., and Liedberg, B.
- Abstract
Self-assembly of oligo(ethylene glycol)-terminated and amide group containing alkanethiols (HS(CH
2 )15 CONH−EGn ; n = 1, 2, 4, 6) on gold are investigated by contact angle goniometry, ellipsometry, and infrared reflection−absorption spectroscopy. The compounds are shown to form highly ordered monolayers. The molecular conformation of the oligo(ethylene glycol) sublayer is found to depend on the oligomer chain length and intermolecular interactions within the layer, as evidenced by a sharp increase in the amount of helical conformers for n = 6. - Published
- 1999
22. Atomic force microscopy of self-assembled nanostructures of TPPS 4 on SAM substrates
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Augulis, R., Valiokas, R., Liedberg, B., and Ricardas Rotomskis
23. Interfacial structure and protein incorporation in sparsely tethered phospholipid membranes.
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Gavutis M, Paracini N, Lakey J, Valiokas R, and Clifton LA
- Abstract
Tethered bilayer lipid membranes (tBLMs) are a robust model system for studying the biophysics of cell membranes, including protein-lipid interactions and membrane dynamics. In this study we describe the structural properties of a novel tBLM platform based on self-assembled monolayers (SAMs) on gold presenting sparsely distributed linear tethers. The interfacial architecture of tBLMs built on two types of alkane tether arrangements, homogeneously distributed short tethers and nanoclustered long tethers, were resolved using neutron reflectometry (NR). A series of tBLM systems was prepared and structurally characterized, with variations in membrane phase (gel and fluid lipids), substrate attachment type (floating and tethered), and electrostatic properties (zwitterionic and negatively charged lipids). Furthermore, the versatility of the tBLM platform was demonstrated by incorporating transmembrane proteins, specifically the outer membrane protein F (OmpF), into the tethered bilayer. Quantitative analyses using NR and quartz crystal microbalance with dissipation monitoring (QCM-D) confirmed successful protein incorporation, with an estimated OmpF volume fraction ∼ 18 % within the tBLM. The tBLMs exhibited excellent stability and maintained structural integrity under continuous flow conditions during up to 16-hour NR experiments. Our results highlight the adaptability of this sparse tethering system for creating physiologically relevant membrane models, facilitating precise investigations of membrane-associated processes and protein interactions. The study establishes the potential of this platform for advancing biophysical research on cell membranes and membrane proteins, as well as developing biomimetic systems for analytical and screening applications., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2025 Elsevier Inc. All rights reserved.)
- Published
- 2025
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24. Bilayer lipid membrane formation on surface assemblies with sparsely distributed tethers.
- Author
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Gavutis M, Schulze-Niemand E, Lee HH, Liedberg B, Stein M, and Valiokas R
- Subjects
- Reproducibility of Results, Polymers, Membrane Proteins, Lipid Bilayers chemistry, Molecular Dynamics Simulation
- Abstract
A combined computational and experimental study of small unilamellar vesicle (SUV) fusion on mixed self-assembled monolayers (SAMs) terminated with different deuterated tether moieties (-(CD
2 )7 CD3 or -(CD2 )15 CD3 ) is reported. Tethered bilayer lipid membrane (tBLM) formation of synthetic 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine was initially probed on SAMs with controlled tether (d-alkyl tail) surface densities and lateral molecular packing using quartz crystal microbalance with dissipation monitoring (QCM-D). Long time-scale coarse-grained molecular dynamics (MD) simulations were then employed to elucidate the mechanisms behind the interaction between the SUVs and the different phases formed by the -(CD2 )7 CD3 and -(CD2 )15 CD3 tethers. Furthermore, a series of real time kinetics was recorded under different osmotic conditions using QCM-D to determine the accumulated lipid mass and for probing the fusion process. It is shown that the key factors driving the SUV fusion and tBLM formation on this type of surfaces involve tether insertion into the SUVs along with vesicle deformation. It is also evident that surface densities of the tethers as small as a few mol% are sufficient to obtain stable tBLMs with a high reproducibility. The described "sparsely tethered" tBLM system can be advantageous in studying different biophysical phenomena, such as membrane protein insertion, effects of receptor clustering, and raft formation.- Published
- 2023
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25. Comparison of Microglial Morphology and Function in Primary Cerebellar Cell Cultures on Collagen and Collagen-Mimetic Hydrogels.
- Author
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Balion Z, Svirskienė N, Svirskis G, Inokaitis H, Cėpla V, Ulčinas A, Jelinskas T, Eimont R, Paužienė N, Valiokas R, and Jekabsone A
- Abstract
Neuronal-glial cell cultures are usually grown attached to or encapsulated in an adhesive environment as evenly distributed networks lacking tissue-like cell density, organization and morphology. In such cultures, microglia have activated amoeboid morphology and do not display extended and intensively branched processes characteristic of the ramified tissue microglia. We have recently described self-assembling functional cerebellar organoids promoted by hydrogels containing collagen-like peptides (CLPs) conjugated to a polyethylene glycol (PEG) core. Spontaneous neuronal activity was accompanied by changes in the microglial morphology and behavior, suggesting the cells might play an essential role in forming the functional neuronal networks in response to the peptide signalling. The present study examines microglial cell morphology and function in cerebellar cell organoid cultures on CLP-PEG hydrogels and compares them to the cultures on crosslinked collagen hydrogels of similar elastomechanical properties. Material characterization suggested more expressed fibril orientation and denser packaging in crosslinked collagen than CLP-PEG. However, CLP-PEG promoted a significantly higher microglial motility (determined by time-lapse imaging) accompanied by highly diverse morphology including the ramified (brightfield and confocal microscopy), more active Ca
2+ signalling (intracellular Ca2+ fluorescence recordings), and moderate inflammatory cytokine level (ELISA). On the contrary, on the collagen hydrogels, microglial cells were significantly less active and mostly round-shaped. In addition, the latter hydrogels did not support the neuron synaptic activity. Our findings indicate that the synthetic CLP-PEG hydrogels ensure more tissue-like microglial morphology, motility, and function than the crosslinked collagen substrates.- Published
- 2022
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26. Cardiomyogenic Differentiation Potential of Human Dilated Myocardium-Derived Mesenchymal Stem/Stromal Cells: The Impact of HDAC Inhibitor SAHA and Biomimetic Matrices.
- Author
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Miksiunas R, Aldonyte R, Vailionyte A, Jelinskas T, Eimont R, Stankeviciene G, Cepla V, Valiokas R, Rucinskas K, Janusauskas V, Labeit S, and Bironaite D
- Subjects
- Aged, Cardiomyopathy, Dilated chemically induced, Case-Control Studies, Cell Proliferation, Histone Deacetylase Inhibitors pharmacology, Humans, Male, Mesenchymal Stem Cells drug effects, Middle Aged, Myocytes, Cardiac drug effects, Regeneration, Biomimetics, Cardiomyopathy, Dilated pathology, Cell Differentiation, Mesenchymal Stem Cells pathology, Myocytes, Cardiac cytology, Vorinostat pharmacology
- Abstract
Dilated cardiomyopathy (DCM) is the most common type of nonischemic cardiomyopathy characterized by left ventricular or biventricular dilation and impaired contraction leading to heart failure and even patients' death. Therefore, it is important to search for new cardiac tissue regenerating tools. Human mesenchymal stem/stromal cells (hmMSCs) were isolated from post-surgery healthy and DCM myocardial biopsies and their differentiation to the cardiomyogenic direction has been investigated in vitro. Dilated hmMSCs were slightly bigger in size, grew slower, but had almost the same levels of MSC-typical surface markers as healthy hmMSCs. Histone deacetylase (HDAC) activity in dilated hmMSCs was 1.5-fold higher than in healthy ones, which was suppressed by class I and II HDAC inhibitor suberoylanilide hydroxamic acid (SAHA) showing activation of cardiomyogenic differentiation-related genes alpha-cardiac actin (ACTC1 ) and cardiac troponin T (TNNT2 ). Both types of hmMSCs cultivated on collagen I hydrogels with hyaluronic acid (HA) or 2-methacryloyloxyethyl phosphorylcholine (MPC) and exposed to SAHA significantly downregulated focal adhesion kinase ( PTK2 ) and activated ACTC1 and TNNT2 . Longitudinal cultivation of dilated hmMSC also upregulated alpha-cardiac actin. Thus, HDAC inhibitor SAHA, in combination with collagen I-based hydrogels, can tilt the dilated myocardium hmMSC toward cardiomyogenic direction in vitro with further possible therapeutic application in vivo.
- Published
- 2021
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27. Cerebellar Cells Self-Assemble into Functional Organoids on Synthetic, Chemically Crosslinked ECM-Mimicking Peptide Hydrogels.
- Author
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Balion Z, Cėpla V, Svirskiene N, Svirskis G, Druceikaitė K, Inokaitis H, Rusteikaitė J, Masilionis I, Stankevičienė G, Jelinskas T, Ulčinas A, Samanta A, Valiokas R, and Jekabsone A
- Subjects
- Animals, Astrocytes physiology, Biomimetic Materials chemistry, Calcium Signaling, Cells, Cultured, Cross-Linking Reagents chemistry, Extracellular Matrix chemistry, Neurons physiology, Organoids metabolism, Rats, Rats, Wistar, Cerebellum cytology, Collagen chemistry, Hydrogels chemistry, Oligopeptides chemistry, Organoids cytology, Tissue Scaffolds chemistry
- Abstract
Hydrogel-supported neural cell cultures are more in vivo-relevant compared to monolayers formed on glass or plastic substrates. However, there is a lack of synthetic microenvironment available for obtaining standardized and easily reproducible cultures characterized by tissue-mimicking cell composition, cell-cell interactions, and functional networks. Synthetic peptides representing the biological properties of the extracellular matrix (ECM) proteins have been reported to promote the adhesion-driven differentiation and functional maturation of neural cells. Thus, such peptides can serve as building blocks for engineering a standardized, all-synthetic environment. In this study, we have compared the effect of two chemically crosslinked hydrogel compositions on primary cerebellar cells: collagen-like peptide (CLP), and CLP with an integrin-binding motif arginine-glycine-aspartate (CLP-RGD), both conjugated to polyethylene glycol molecular templates (PEG-CLP and PEG-CLP-RGD, respectively) and fabricated as self-supporting membranes. Both compositions promoted a spontaneous organization of primary cerebellar cells into tissue-like clusters with fast-rising Ca
2+ signals in soma, reflecting action potential generation. Notably, neurons on PEG-CLP-RGD had more neurites and better synaptic efficiency compared to PEG-CLP. For comparison, poly-L-lysine-coated glass and plastic surfaces did not induce formation of such spontaneously active networks. Additionally, contrary to the hydrogel membranes, glass substrates functionalized with PEG-CLP and PEG-CLP-RGD did not sufficiently support cell attachment and, subsequently, did not promote functional cluster formation. These results indicate that not only chemical composition but also the hydrogel structure and viscoelasticity are essential for bioactive signaling. The synthetic strategy based on ECM-mimicking, multifunctional blocks in registry with chemical crosslinking for obtaining tissue-like mechanical properties is promising for the development of fast and well standardized functional in vitro neural models and new regenerative therapies., Competing Interests: The CMP PEG-CLP, PEG-CLP-RGD hydrogel matrix technology described in this manuscript is disclosed in Ferentis UAB patents. RV is a majority shareholder and the CEO, and VC, KD, TJ, GS are/were employees of Ferentis UAB.- Published
- 2020
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28. In Vitro Cultivation of Limbal Epithelial Stem Cells on Surface-Modified Crosslinked Collagen Scaffolds.
- Author
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Haagdorens M, Cėpla V, Melsbach E, Koivusalo L, Skottman H, Griffith M, Valiokas R, Zakaria N, Pintelon I, and Tassignon MJ
- Abstract
Purpose: To investigate the efficacy of recombinant human collagen type I (RHC I) and collagen-like peptide (CLP) hydrogels as alternative carrier substrates for the cultivation of limbal epithelial stem cells (LESC) under xeno-free culture conditions., Methods: Human LESC were cultivated on seven different collagen-derived hydrogels: (1) unmodified RHC I, (2) fibronectin-patterned RHC I, (3) carbodiimide-crosslinked CLP (CLP-12 EDC), (4) DMTMM- (4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methyl-morpholinium-) crosslinked CLP (CLP-12), (5) fibronectin-patterned CLP-12, (6) "3D limbal niche-mimicking" CLP-12, and (7) DMTMM-crosslinked CLP made from higher CLP concentration solution. Cell proliferation, cell morphology, and expression of LESC markers were analyzed. All data were compared to cultures on human amniotic membrane (HAM)., Results: Human LESC were successfully cultivated on six out of seven hydrogel formulations, with primary cell cultures on CLP-12 EDC being deemed unsuccessful since the area of outgrowth did not meet quality standards (i.e., inconsistence in outgrowth and confluence) after 14 days of culture. Upon confluence, primary LESC showed high expression of the stem cell marker ΔNp63, proliferation marker cytokeratin (KRT) 14, adhesion markers integrin- β 4 and E-cadherin, and LESC-specific extracellular matrix proteins laminin- α 1, and collagen type IV. Cells showed low expression of differentiation markers KRT3 and desmoglein 3 (DSG3). Significantly higher gene expression of KRT3 was observed for cells cultured on CLP hydrogels compared to RHC I and HAM. Surface patterning of hydrogels influenced the pattern of proliferation but had no significant effect on the phenotype or genotype of cultures. Overall, the performance of RHC I and DMTMM-crosslinked CLP hydrogels was equivalent to that of HAM., Conclusion: RHC I and DMTMM-crosslinked CLP hydrogels, irrespective of surface modification, support successful cultivation of primary human LESC using a xeno-free cultivation protocol. The regenerated epithelium maintained similar characteristics to HAM-based cultures.
- Published
- 2019
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29. A Tautoleptic Approach to Chiral Hydrogen-Bonded Supramolecular Tubular Polymers with Large Cavity.
- Author
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Neniškis A, Račkauskaitė D, Shi Q, Robertson AJ, Marsh A, Ulčinas A, Valiokas R, Brown SP, Wärnmark K, and Orentas E
- Abstract
A new strategy towards tubular hydrogen-bonded polymers based on the self-assembly of isocytosine tautomers in orthogonal directions is proposed and experimentally verified, including by
1 H fast magic-angle spinning (MAS) solid-state NMR. The molecular tubes obtained possess large internal diameter and tailor-made outer functionalities rendering them potential candidates for a number of applications., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2018
- Full Text
- View/download PDF
30. Functional fabrication of recombinant human collagen-phosphorylcholine hydrogels for regenerative medicine applications.
- Author
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Mirazul Islam M, Cėpla V, He C, Edin J, Rakickas T, Kobuch K, Ruželė Ž, Bruce Jackson W, Rafat M, Lohmann CP, Valiokas R, and Griffith M
- Subjects
- Cell Adhesion, Cell Line, Cell Proliferation, Humans, Recombinant Proteins chemistry, Collagen chemistry, Hydrogels, Phosphorylcholine chemistry, Regenerative Medicine
- Abstract
The implant-host interface is a critical element in guiding tissue or organ regeneration. We previously developed hydrogels comprising interpenetrating networks of recombinant human collagen type III and 2-methacryloyloxyethyl phosphorylcholine (RHCIII-MPC) as substitutes for the corneal extracellular matrix that promote endogenous regeneration of corneal tissue. To render them functional for clinical application, we have now optimized their composition and thereby enhanced their mechanical properties. We have demonstrated that such optimized RHCIII-MPC hydrogels are suitable for precision femtosecond laser cutting to produce complementing implants and host surgical beds for subsequent tissue welding. This avoids the tissue damage and inflammation associated with manual surgical techniques, thereby leading to more efficient healing. Although we previously demonstrated in clinical testing that RHCIII-based implants stimulated cornea regeneration in patients, the rate of epithelial cell coverage of the implants needs improvement, e.g. modification of the implant surface. We now show that our 500μm thick RHCIII-MPC constructs comprising over 85% water are suitable for microcontact printing with fibronectin. The resulting fibronectin micropatterns promote cell adhesion, unlike the bare RHCIII-MPC hydrogel. Interestingly, a pattern of 30μm wide fibronectin stripes enhanced cell attachment and showed the highest mitotic rates, an effect that potentially can be utilized for faster integration of the implant. We have therefore shown that laboratory-produced mimics of naturally occurring collagen and phospholipids can be fabricated into robust hydrogels that can be laser profiled and patterned to enhance their potential function as artificial substitutes of donor human corneas., (Copyright © 2014 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2015
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31. Nanobiochips.
- Author
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Valiokas R
- Subjects
- Biomimetics, Electronics, Equipment Design, Nanotechnology instrumentation, Nanotechnology methods, Protein Array Analysis instrumentation, Protein Array Analysis methods
- Abstract
The actual progress towards biological chip devices consisting of nanostructured functional entities is summarized. The practical aspects of molecular nanobiochips are discussed, including the main surface chemistry platforms, as well as conventional and unconventional fabrication tools. Several successful biological demonstrations of the first generation of nanobiochip devices (mainly, different nanoarrays) are highlighted with the aim of revealing the potential of this technology in life sciences, medicine, and related areas.
- Published
- 2012
- Full Text
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32. Characterization and application of a surface modification designed for QCM-D studies of biotinylated biomolecules.
- Author
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Nilebäck E, Feuz L, Uddenberg H, Valiokas R, and Svedhem S
- Subjects
- Antigen-Antibody Reactions, Biotinylation, Streptavidin chemistry, Surface Properties, Biosensing Techniques methods, Biotin chemistry, Quartz Crystal Microbalance Techniques methods
- Abstract
The rapid development of surface sensitive biosensor technologies, especially towards nanoscale devices, requires increasing control of surface chemistry to provide reliable and reproducible results, but also to take full advantage of the sensing opportunities. Here, we present a surface modification strategy to allow biotinylated biomolecules to be immobilized to gold coated sensor crystals for quartz crystal microbalance with dissipation monitoring (QCM-D) sensing. The unique feature of QCM-D is its sensitivity to nanomechanical (viscoelastic) properties at the sensing interface. The surface modification was based on mixed monolayers of oligo(ethylene glycol) (OEG) disulfides, with terminal -OH or biotin groups, on gold. Mixtures containing 1% of the biotin disulfide were concluded to be the most appropriate based on the performance when streptavidin was immobilized to biotinylated sensors and the subsequent biotinylated bovine serum albumin (BSA) interaction was studied. The OEG background kept the unspecific protein binding to a minimum, even when subjected to serum solutions with a high protein concentration. Based on characterization by contact angle goniometry, ellipsometry, and infrared spectroscopy, the monolayers were shown to be well-ordered, with the OEG chains predominantly adopting a helical conformation but also partly an amorphous structure. Storage stability was concluded to depend mainly on light exposure while almost all streptavidin binding activity was retained when storing the sensors cold and dark for 8 weeks. The surface modification was also tested for repeated antibody-antigen interactions between BSA and anti-BSA (immobilized to biotinylated protein A) in QCM-D measurements lasting for >10h with intermediate basic regeneration. This proved an excellent stability of the coating and good reproducibility was obtained for 5 interaction cycles. With this kind of generic surface modification QCM-D can be used in a variety of biosensing applications to provide not only mass but also relevant information of the structural properties of adlayers., (Copyright © 2011 Elsevier B.V. All rights reserved.)
- Published
- 2011
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33. Functional hydrogel density patterns fabricated by dip-pen nanolithography and photografting.
- Author
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Rakickas T, Ericsson EM, Ruželė Z, Liedberg B, and Valiokas R
- Subjects
- Microscopy, Microscopy, Atomic Force, Polyethylene Glycols chemistry, Hydrogels chemistry, Nanotechnology methods
- Published
- 2011
- Full Text
- View/download PDF
34. Long-chain alkylthiol assemblies containing buried in-plane stabilizing architectures.
- Author
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Lee HH, Ruzele Z, Malysheva L, Onipko A, Gutés A, Björefors F, Valiokas R, and Liedberg B
- Abstract
A series of alkylthiol compounds were synthesized to study the formation and structure of complex self-assembled monolayers (SAMs) consisting of interchanging structural modules stabilized by intermolecular hydrogen bonds. The chemical structure of the synthesized compounds, HS(CH(2))(15)CONH(CH(2)CH(2)O)(6)CH(2)CONH-X, where X refers to the extended chains of either -(CH(2))(n)CH(3) or -(CD(2))(n)CD(3), with n = 0, 1, 7, 8, 15, was confirmed by NMR and elemental analysis. The formation of highly ordered, methyl-terminated SAMs on gold from diluted ethanolic solutions of these compounds was revealed using contact angle goniometry, null ellipsometry, cyclic voltammetry, and infrared reflection absorption spectroscopy. The experimental work was complemented with extensive DFT modeling of infrared spectra and molecular orientation. New assignments were introduced for both nondeuterated and deuterated compounds. The latter set of compounds also served as a convenient tool to resolve the packing, conformation, and orientation of the buried and extended modules within the SAM. Thus, it was shown that the lower alkyl portion together with the hexa(ethylene glycol) portion is stabilized by the two layers of lateral hydrogen bonding networks between the amide groups, and they provide a structurally robust support for the extended alkyls. The presented system can be considered to be an extension of the well-known alkyl SAM platform, enabling precise engineering of nanoscopic architectures on the length scale from a few to approximately 60 A for applications such as cell membrane mimetics, molecular nanolithography, and so forth.
- Published
- 2009
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- View/download PDF
35. Protein-protein interactions in reversibly assembled nanopatterns.
- Author
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Rakickas T, Gavutis M, Reichel A, Piehler J, Liedberg B, and Valiokas R
- Subjects
- Biotin chemistry, Chelating Agents pharmacology, Ethylene Glycol chemistry, Kinetics, Microscopy, Atomic Force, Microscopy, Fluorescence, Models, Chemical, Nanostructures chemistry, Protein Interaction Mapping, Surface Plasmon Resonance, Nanoparticles chemistry, Nanotechnology methods, Proteins chemistry
- Abstract
We describe herein a platform to study protein-protein interactions and to form functional protein complexes in nanoscopic surface domains. For this purpose, we employed multivalent chelator (MCh) templates, which were fabricated in a stepwise procedure combining dip-pen nanolithography (DPN) and molecular recognition-directed assembly. First, we demonstrated that an atomic force microscope (AFM) tip inked with an oligo(ethylene glycol) (OEG) disulfide compound bearing terminal biotin groups can be used to generate biotin patterns on gold achieving line widths below 100 nm, a generic platform for fabrication of functional nanostructures via the highly specific biotin-streptavidin recognition. Subsequently, we converted such biotin/streptavidin patterns into functional MCh patterns for reversible assembly of histidine-tagged (His-tagged) proteins via the attachment of a tris-nitriloacetic acid (trisNTA) biotin derivative. Fluorescence microscopy confirmed reversible immobilization of the receptor subunit ifnar2-His10 and its interaction with interferon-alpha2 labeled with fluorescent quantum dots in a 7 x 7 dot array consisting of trisNTA spots with a diameter of approximately 230 nm. Moreover, we carried out characterization of the specificity, stability, and reversibility as well as quantitative real-time analysis of protein-protein interactions at the fabricated nanopatterns by imaging surface plasmon resonance. Our work offers a route for construction and analysis of functional protein-based nanoarchitectures.
- Published
- 2008
- Full Text
- View/download PDF
36. Self-assembled monolayers containing terminal mono-, bis-, and tris-nitrilotriacetic acid groups: characterization and application.
- Author
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Valiokas R, Klenkar G, Tinazli A, Reichel A, Tampé R, Piehler J, and Liedberg B
- Subjects
- Carrier Proteins chemistry, Kinetics, Maltose-Binding Proteins, Models, Molecular, Molecular Structure, Spectrophotometry, Sulfhydryl Compounds chemistry, Surface Plasmon Resonance, Nitrilotriacetic Acid chemistry
- Abstract
We have undertaken a structural and functional study of self-assembled monolayers (SAMs) formed on gold from a series of alkylthiol compounds containing terminal multivalent chelators (MCHs) composed of mono-, bis-, and tris-nitrilotriacetic acid (NTA) moieties. SAMs were formed from single-component solutions of the mono-, bis-, and tris-NTA compounds, as well as from mixtures with a tri(ethylene glycol)-terminated alkylthiol (EG(3)). Contact angle goniometry, null ellipsometry, and infrared spectroscopy were used to explore the structural characteristics of the MCH SAMs. Ellipsometric measurements show that the amount of the MCH groups on surfaces increases with increasing mol % of the MCH thiols in the loading solution up to about 80 mol %. We also conclude that mixed SAMs, prepared in the solution composition regime 0-30 mol % of the MCH thiols, consist of a densely packed alkyl layer, an amorphous ethylene glycol layer, and an outermost layer of MCH groups exposed toward the ambient. Above 30 mol %, a significant degree of disorder is observed in the SAMs. Finally, functional evaluation of the three MCH SAMs prepared at 0-30 mol% reveals a consistent increase in binding strength with increasing multivalency. The tris-NTA SAM, in particular, is enabled for stable and functional immobilization of a His6-tagged extracellular receptor subunit, even at low chelator surface concentrations, which makes it suitable for applications when a low surface density of capturing sites is desirable, e.g., in kinetic analyses.
- Published
- 2008
- Full Text
- View/download PDF
37. Differential protein assembly on micropatterned surfaces with tailored molecular and surface multivalency.
- Author
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Valiokas R, Klenkar G, Tinazli A, Tampé R, Liedberg B, and Piehler J
- Subjects
- Chelating Agents chemistry, Histidine chemistry, Imidazoles chemistry, Interferon-alpha chemistry, Ligands, Membrane Proteins chemistry, Membrane Proteins metabolism, Nickel chemistry, Nitrilotriacetic Acid chemistry, Polyethylene Glycols chemistry, Protein Binding, Proteins chemistry, Receptor, Interferon alpha-beta, Receptors, Interferon chemistry, Receptors, Interferon metabolism, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Sulfhydryl Compounds chemistry, Surface Properties, Protein Array Analysis methods, Proteins metabolism
- Published
- 2006
- Full Text
- View/download PDF
38. Piezo dispensed microarray of multivalent chelating thiols for dissecting complex protein-protein interactions.
- Author
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Klenkar G, Valiokas R, Lundström I, Tinazli A, Tampé R, Piehler J, and Liedberg B
- Subjects
- Molecular Structure, Nitrilotriacetic Acid, Protein Binding, Surface Plasmon Resonance, Chelating Agents chemistry, Protein Array Analysis methods, Proteins chemistry, Proteins metabolism, Sulfhydryl Compounds chemistry
- Abstract
The fabrication of a novel biochip, designed for dissection of multiprotein complex formation, is reported. An array of metal chelators has been produced by piezo dispensing of a bis-nitrilotriacetic acid (bis-NTA) thiol on evaporated gold thin films, prestructured with a microcontact printed grid of eicosanethiols. The bis-NTA thiol is mixed in various proportions with an inert, tri(ethylene glycol) hexadecane thiol, and the thickness and morphological homogeneity of the dispensed layers are characterized by imaging ellipsometry before and after back-filling with the same inert thiol and subsequent rinsing. It is found that the dispensed areas display a monotonic increase in thickness with increasing molar fraction of bis-NTA in the dispensing solution, and they are consistently a few Angströms thicker than those prepared at the same molar fraction by solution self-assembly under equilibrium-like conditions. The bulkiness of the bis-NTA tail group and the short period of time available for chemisorption and in-plane organization of the dispensed thiols are most likely responsible for the observed difference in thickness. Moreover, the functional properties of this biochip are demonstrated by studying multiple protein-protein interactions using imaging surface plasmon resonance. The subunits of the type I interferon receptor are immobilized as a composition array determined by the surface concentration of bis-NTA in the array elements. Ligand dissociation kinetics depends on the receptor surface concentration, which is ascribed to the formation of a ternary complex by simultaneous interaction of the ligand with the two receptor subunits. Thus, multiplexed monitoring of binding phenomena at various compositions (receptor densities) offers a powerful tool to dissect protein-protein interactions.
- Published
- 2006
- Full Text
- View/download PDF
39. Selective recruitment of membrane protein complexes onto gold substrates patterned by dip-pen nanolithography.
- Author
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Valiokas R, Vaitekonis S, Klenkar G, Trinkūnas G, and Liedberg B
- Subjects
- Adsorption, Bacterial Proteins chemistry, Gold chemistry, Microscopy, Atomic Force, Protein Binding, Rhodobacter sphaeroides metabolism, Static Electricity, Substrate Specificity, Sulfhydryl Compounds chemistry, Surface Properties, Membrane Proteins chemistry, Nanotechnology methods, Proteins chemistry
- Abstract
Dip-pen nanolithography (DPN) is employed to develop a generic array platform for the selective recruitment of membrane protein complexes. An atomic force microscope tip inked with HS(CH2)16NH2 is used to generate amino-terminated domains on gold. These domains can be arranged into microscopic and submicroscopic patterns, and the untreated gold substrate is subsequently blocked with HS(CH2)2CONH(CH2CH2O)15CH3, a compound known to resist the unspecific binding of proteins and cells. The patterned gold substrate is exposed to an enriched membrane fraction from mutant Rhodobacter sphaeroides, which contains photosynthetic core complexes consisting of the reaction center and the light-harvesting complex LH1. The selective recruitment to the patterned domains, governed primarily by electrostatic interactions, is confirmed by contact mode atomic force microscopy.
- Published
- 2006
- Full Text
- View/download PDF
40. Structural and kinetic properties of laterally stabilized, oligo(ethylene glycol)-containing alkylthiolates on gold: a modular approach.
- Author
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Valiokas R, Ostblom M, Björefors F, Liedberg B, Shi J, and Konradsson P
- Abstract
The formation of highly ordered self-assembled monolayers (SAMs) on gold from an unusually long and linear compound HS(CH(2))(15)CONH(CH(2)CH(2)O)(6)CH(2)CONH(CH(2))(15)CH(3) is investigated by contact angle goniometry, ex situ null ellipsometry, cyclic voltammetry and infrared reflection-absorption spectroscopy. The molecules are found to assemble in an upright position as a complete monolayer within 60 min. The overall structure of the SAM reaches equilibrium within 24 h as evidenced by infrared spectroscopy, although a slight improvement in water contact angles is observed over a period of a few weeks. The resulting SAM is 60 A thick and it displays an advancing water contact angle of 112 degrees and excellent electrochemical blocking characteristics with typical current densities about 20 times lower as compared to those observed for HS(CH(2))(15)CH(3) SAMs. The dominating crystalline phases of the supporting HS(CH(2))(15) and terminal (CH(2))(15)CH(3) alkyl portions, as well as the sealed oligo(ethylene glycol) (OEG) "core," appear as unusually sharp features in the infrared spectra at room temperature. For example, the splitting seen for the CH(3) stretching and CH(2) scissoring peaks is normally only observed for conformationally trapped alkylthiolate SAMs at low temperatures and for highly crystalline polymethylenes. Temperature-programmed infrared spectroscopy in ultrahigh vacuum reveals a significantly improved thermal stability of the SAM under investigation, as compared to two analogous OEG derivatives without the extended alkyl chain. Our study points out the advantages of adopting a "modular approach" in designing novel SAM-forming compounds with precisely positioned in plane stabilizing groups. We demonstrate also the potential of using the above set of compounds in the fabrication of "hydrogel-like" arrays with controlled wetting properties for application in the ever-growing fields of protein and cell analysis, as well as for bioanalytical applications.
- Published
- 2006
- Full Text
- View/download PDF
41. Ice nucleation and phase behavior on oligo(ethylene glycol) and hydroxyl self-assembled monolayers: simulations and experiments.
- Author
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Ostblom M, Valiokas R, Konradsson P, Svensson SC, Liedberg B, Garrett M, and Allara DL
- Subjects
- Computer Simulation, Gold chemistry, Hydrogen chemistry, Hydroxyl Radical, Kinetics, Models, Chemical, Spectrophotometry, Infrared, Surface Properties, Ethylene Glycol chemistry, Ice, Membranes, Artificial, Phase Transition
- Abstract
The nucleation and phase behavior of ultrathin D2O-ice overlayers have been studied on oligo(ethylene glycol) (OEG)-terminated and hydroxyl self-assembled monolayers (SAMs) at low temperatures in ultrahigh vacuum. Infrared reflection-absorption spectroscopy (IRAS) is used to characterize the ice overlayers, the SAMs, and the interactions occurring between the ice and the SAM surfaces. Spectral simulations, based on optical models in conjunction with Maxwell Garnett effective medium theory, point out the importance of including voids in the modeling of the ice structures, with void fractions reaching 60% in some overlayers. The kinetics of the phase transition from amorphous-like to crystalline-like ice upon isothermal annealing at 140 K is found to depend on the conformational state of the supporting OEG SAM surface. The rate is fast on the helical OEG SAMs and slow on the corresponding all-trans SAMs. This difference in kinetics is most likely due to a pronounced D2O interpenetration and binding to the all-trans segments of the ethylene glycol portion of the SAM. No such penetration and binding was observed on the helical OEG SAM.
- Published
- 2006
- Full Text
- View/download PDF
42. High-affinity chelator thiols for switchable and oriented immobilization of histidine-tagged proteins: a generic platform for protein chip technologies.
- Author
-
Tinazli A, Tang J, Valiokas R, Picuric S, Lata S, Piehler J, Liedberg B, and Tampé R
- Subjects
- Biosensing Techniques, Spectrophotometry, Infrared, Surface Plasmon Resonance, Surface Properties, Chelating Agents chemistry, Histidine chemistry, Protein Array Analysis, Proteins chemistry, Sulfhydryl Compounds chemistry
- Abstract
Protein micro-/nanoarrays are becoming increasingly important in systematic approaches for the exploration of protein-protein interactions and dynamic protein networks, so there is a high demand for specific, generic, stable, uniform, and locally addressable protein immobilization on solid supports. Here we present multivalent metal-chelating thiols that are suitable for stable binding of histidine-tagged proteins on biocompatible self-assembled monolayers (SAMs). The architectures and physicochemical properties of these SAMs have been probed by various surface-sensitive techniques such as contact angle goniometry, ellipsometry, and infrared reflection-absorption spectroscopy. The specific molecular organization of proteins and protein complexes was demonstrated by surface plasmon resonance, confocal laser scanning, and atomic force microscopy. In contrast to the mono-NTA/His6 tag interaction, which has major drawbacks because of its low affinity and fast dissociation, drastically improved stability of protein binding by these multivalent chelator surfaces was observed. The immobilized histidine-tagged proteins are uniformly oriented and retain their function. At the same time, proteins can be removed from the chip surface under mild conditions (switchability). This new platform for switchable and oriented immobilization should assist proteome-wide wide analyses of protein-protein interactions as well as structural and single-molecule studies.
- Published
- 2005
- Full Text
- View/download PDF
43. First-principle DFT and MP2 modeling of infrared reflection-absorption spectra of oriented helical ethylene glycol oligomers.
- Author
-
Malysheva L, Onipko A, Valiokas R, and Liedberg B
- Abstract
First-principle modeling is used to obtain a comprehensive understanding of infrared reflection absorption (RA) spectra of helical oligo(ethylene glycol) (OEG) containing self-assembled monolayers (SAMs). Highly ordered SAMs of methyl-terminated 1-thiaoligo(ethylene glycols) [HS(CH2CH2O)(n)CH3, n = 5, 6] on gold recently became accessible for systematic infrared analyses [Vanderah et al., Langmuir, 2003, 19, 3752]. We utilized the quoted experimental data to validate the first-principle modeling of infrared RA spectra of HS(CH2CH2O)(5,6)CH3 obtained by (i) DFT methods with gradient corrections (using different basis sets, including 6-311++G) and (ii) HF method followed by a Møller-Plesset (MP2) correlation energy correction. In focus are fundamental modes in the fingerprint and CH-stretching regions. The frequencies and relative intensities in the calculated spectra for a single molecule are unambiguously identified with the bands observed in the experimental RA spectra of the corresponding SAMs. In addition to confirming our earlier assignment of the dominating peak in the CH-stretching region to CH2 asymmetric stretching vibrations, all other spectral features observed in that region have received an interpretation consistent (but not in all cases coinciding) with previous investigations. The obtained results provide an improved understanding of the orientation and conformation of the molecular building blocks within OEG-containing assemblies, which, in our opinion, is crucial for being able to predict the folding and phase characteristics and interaction of OEG-SAMs with water and proteins.
- Published
- 2005
- Full Text
- View/download PDF
44. Protein adsorption to oligo(ethylene glycol) self-assembled monolayers: experiments with fibrinogen, heparinized plasma, and serum.
- Author
-
Benesch J, Svedhem S, Svensson SC, Valiokas R, Liedberg B, and Tengvall P
- Subjects
- Adsorption, Ethylene Glycol metabolism, Gold, Heparin chemistry, Humans, Models, Chemical, Sodium Dodecyl Sulfate chemistry, Temperature, Time Factors, Ethylene Glycol chemistry, Fibrinogen metabolism, Plasma cytology
- Abstract
Low protein adsorption is believed advantageous for blood-contacting materials and ethylene glycols (EG)-based polymeric compounds are often attached to surfaces for this purpose. In the present study, the adsorption of fibrinogen, serum, and plasma were studied by ellipsometry on a series of well-defined oligo(EG) terminated alkane-thiols self-assembled on gold. The layers were prepared with compounds of the general structure HS-(CH2)15-CONH-EGn, where n = 2, 4, and 6. Methoxy-terminated tri(EG) undecanethiol and hydroxyl-terminated hexadecanethiol self-assembled monolayers (SAMs) were used as references. The results clearly demonstrate that the adsorption depends on the experimental conditions with small amounts of fibrinogen adsorbing from a single protein solution, but larger amounts of proteins from serum and plasma. The adsorption of fibrinogen and blood plasma decreased with an increasing number of EG repeats and was temperature-dependent. Significantly less serum adsorbed to methoxy tri(EG) than to hexa(EG) and more proteins remained on the latter surface after incubation in a sodium dodecyl sulfate (SDS) solution, indicating a looser protein binding to the methoxy-terminated surface. All surfaces adsorbed complement factor 3 (C3) from serum and plasma, although no surface-mediated complement activation was observed. The present study points to the importance of a careful choice of the protein model system before general statements regarding the protein repellant properties of potential surfaces can be made.
- Published
- 2001
- Full Text
- View/download PDF
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