1. TRANSCRIPTOMICS BY MASSIVE PARALLEL, PYROSEQUENCING OF THE GREEN STINK BUG: FUNCTIONAL GENE ONTOLOGY AND NEW TARGETS FOR CONTROL.
- Author
-
van Kretschmar, J. B., Donohue, K. V., Cabrera, A. R., Magalhaes, L. C., Sorenson, C. E., Bacheler, J. S., Khalil, S. M. S., and Roe, R. M.
- Abstract
A transcriptome was constructed by pyrosequencing on the GS-FLX sequencer (Roche), for the whole body of the combined nymph and adult green stink bug, Acrosternum hilare (Say), collected from sites in North Carolina and Virginia, USA. The cDNA library for the combined sample was sequenced on one-half plate. The total output from the reads was 40, 500, 000 bps (base pairs) of data. The whole body library produced 162, 000 reads which were assembled using Roche software (Genome Sequencer FLX System GS De Novo Assembler, version 2.3, October 2009) into 1,598 contigs (contiguous sequences) with the assembly cutoff set at 400 bp, and into 2,534 contigs with the assembly cutoff set at 150 bp. BLASTp was used to compare contigs to the Uniprot database (January 3, 2010) to determine putative sequence identity. Of these contigs, 974 had an expect value of 1e-05 or lower. Of these, 876 had an assigned Uniprot GO (Gene Ontology) ID and were mapped and annotated. Wego software was used to translate the Uniprot GO ID for these contigs into GO Level 2 functional categories. Analysis of this recently-sequenced green stink bug transcriptome is aimed at the discovery of new insecticide targets for applications in plant, genetic pest management. [ABSTRACT FROM AUTHOR]
- Published
- 2010