3,369 results on '"Van V"'
Search Results
2. Heterologous expression and characterization of a MoAA16 polysaccharide monooxygenase from the rice blast fungus Magnaporthe oryzae
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Hung M. Nguyen, Loan Q. Le, Luca Sella, Luke M. Broadbent, Roslyn M. Bill, and Van V. Vu
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Cellulose ,Enzymatic activity ,Fungal infection ,Heterologous expression ,Magnaporthe oryzae ,Monosaccharide ,Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 - Abstract
Background: Cellulose is an organic carbon source that can be used as a sustainable alternative for energy, materials, and chemicals. However, the substantial challenge of converting it into soluble sugars remains a major obstacle in its use as a biofuel and chemical feedstock. A new class of enzymes knowns as copper-dependent polysaccharide monooxygenases (PMOs) or lytic polysaccharide monooxygenases (LPMOs) can break down polysaccharides such as cellulose, chitin, and starch through oxidation. This process enhances the efficiency of cellulose degradation by cellulase. Results: The genome of the fungus Magnaporthe oryzae, the causal agent of rice blast disease, contains the MGG_00245 gene, which encodes a putative PMO referred to as MoAA16. MoAA16 has been found to be highly expressed in planta during the early stages of fungal infection. The gene was optimized for heterologous expression in Pichia pastoris, and its oxidative cleavage activity on cellulose was characterized by analyzing soluble oligosaccharide products using highperformance anion exchange chromatography (HPAEC-PAD). The reaction catalyzed by MoAA16 requires 2 electrons from an electron donor, such as ascorbic acid, and aerobic conditions. It primarily produces Glc1 to Glc4 oligosaccharides, as well as oxidized cellobionic and cellotrionic acids. MoAA16 has been observed to enhance cellulase hydrolysis on phosphoric acid swollen cellulose (PASC) substrate, resulting in the production of more monosaccharide products. Conclusions: Our findings reveal the successful heterologous expression of MoAA16 in P. pastoris and its cellulose-active PMO properties. These results highlight the potential of MoAA16 as a promising candidate for applications in biofuel production and chemical synthesis.How to cite: Nguyen HM, Le LQ, Sella L, et al. Heterologous expression and characterization of a MoAA16 polysaccharide monooxygenase from the rice blast fungus Magnaporthe oryzae. Electron J Biotechnol 2023. https://doi.org/10.1016/j.ejbt.2023.06.002.
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- 2023
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3. DFT studies of the copper active site in AA13 polysaccharide monooxygenases
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Chinh N. Le, Cuong X. Luu, Son Tung Ngo, and Van V. Vu
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biofuel ,DFT calculations ,oxygen activation ,polysaccharide monooxygenases ,Science - Abstract
AA13 polysaccharide monooxygenases (AA13 PMOs) are novel enzymes that break down starch using a copper active site in a substrate binding groove on a solvent-exposed surface. The structure of the copper active site is influenced by the residues in the groove, while the crystal structure of Cu(II)-AA13 was damaged by photoreduction and lacked two exogenous ligands. We utilized density functional theory (DFT) calculations to obtain insights into the structure of Cu(II)-AA13 in the presence and absence of a key residue (G89) of the groove that interferes with the distal coordination site. Results show that the copper active site of AA13 PMOs can exhibit both 6-coordinate and a 5-coordinate structures depending on position of G89. The active site features are intermediate to those in AA9 and AA10 PMOs, which are the most abundant and well characterized PMO families. In addition, the superoxo species of AA13 has structural parameters halfway between those in AA9 and AA10 PMOs. The structural relationship between the active site and intermediates of AA13 with AA9 and AA10 PMOs is also consistent with their evolutionary relationship.
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- 2022
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4. Endovascular Biopsy of Vertebrobasilar Aneurysm in Patient With Polyarteritis Nodosa
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Kazim H. Narsinh, Kamileh Narsinh, David B. McCoy, Zhengda Sun, Cathra Halabi, Karl Meisel, Tarik Tihan, Krishna Chaganti, Matthew R. Amans, Van V. Halbach, Randall T. Higashida, Steven W. Hetts, Christopher F. Dowd, Ethan A. Winkler, Adib A. Abla, Tomasz J. Nowakowski, and Daniel L. Cooke
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fusiform aneurysm ,gene expression profile ,single cell RNA sequencing (scRNA-seq) ,polyarteritis nodosa (PAN) ,endovascular biopsy ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background and Purpose: The management of unruptured intracranial aneurysms remains controversial. The decisions to treat are heavily informed by estimated risk of bleeding. However, these estimates are imprecise, and better methods for stratifying the risk or tailoring treatment strategy are badly needed. Here, we demonstrate an initial proof-of-principle concept for endovascular biopsy to identify the key molecular pathways and gene expression changes associated with aneurysm formation. We couple this technique with single cell RNA sequencing (scRNAseq) to develop a roadmap of the pathogenic changes of a dolichoectatic vertebrobasilar aneurysm in a patient with polyarteritis nodosa.Methods: Endovascular biopsy and fluorescence activated cell sorting was used to isolate the viable endothelial cells (ECs) using the established techniques. A single cell RNA sequencing (scRNAseq) was then performed on 24 aneurysmal ECs and 23 patient-matched non-aneurysmal ECs. An integrated panel of bioinformatic tools was applied to determine the differential gene expression, enriched signaling pathways, and cell subpopulations hypothesized to drive disease pathogenesis.Results: We identify a subset of 7 (29%) aneurysm-specific ECs with a distinct gene expression signature not found in the patient-matched control ECs. A gene set enrichment analysis identified these ECs to have increased the expression of genes regulating the leukocyte-endothelial cell adhesion, major histocompatibility complex (MHC) class I, T cell receptor recycling, tumor necrosis factor alpha (TNFα) response, and interferon gamma signaling. A histopathologic analysis of a different intracranial aneurysm that was later resected yielded a diagnosis of polyarteritis nodosa and positive staining for TNFα.Conclusions: We demonstrate feasibility of applying scRNAseq to the endovascular biopsy samples and identify a subpopulation of ECs associated with cerebral aneurysm in polyarteritis nodosa. Endovascular biopsy may be a safe method for deriving insight into the disease pathogenesis and tailoring the personalized treatment approaches to intracranial aneurysms.
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- 2021
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5. Transcriptomic and Ultrastructural Analyses of Pyricularia Oryzae Treated With Fungicidal Peptaibol Analogs of Trichoderma Trichogin
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Luca Sella, Rakshita Govind, Rocco Caracciolo, Alessandra Quarantin, Van V. Vu, Silvio Tundo, Hung Minh Nguyen, Francesco Favaron, Rita Musetti, and Marta De Zotti
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Pyricularia oryzae ,antimicrobial peptides ,trichogin GA IV ,RNA-seq analysis ,bio-pesticides ,Microbiology ,QR1-502 - Abstract
Eco-friendly analogs of Trichogin GA IV, a short peptaibol produced by Trichoderma longibrachiatum, were assayed against Pyricularia oryzae, the causal agent of rice blast disease. In vitro and in vivo screenings allowed us to identify six peptides able to reduce by about 70% rice blast symptoms. One of the most active peptides was selected for further studies. Microscopy analyses highlighted that the treated fungal spores could not germinate and the fluorescein-labeled peptide localized on the spore cell wall and in the agglutinated cytoplasm. Transcriptomic analysis was carried out on P. oryzae mycelium 3 h after the peptide treatment. We identified 1,410 differentially expressed genes, two-thirds of which upregulated. Among these, we found genes involved in oxidative stress response, detoxification, autophagic cell death, cell wall biogenesis, degradation and remodeling, melanin and fatty acid biosynthesis, and ion efflux transporters. Molecular data suggest that the trichogin analogs cause cell wall and membrane damages and induce autophagic cell death. Ultrastructure observations on treated conidia and hyphae confirmed the molecular data. In conclusion, these selected peptides seem to be promising alternative molecules for developing effective bio-pesticides able to control rice blast disease.
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- 2021
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6. C‑Terminal Plays as the Possible Nucleation of the Self-Aggregation of the S‑Shape Aβ11–42 Tetramer in Solution: Intensive MD Study
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Nguyen Thanh Tung, Philippe Derreumaux, Van V. Vu, Pham Cam Nam, and Son Tung Ngo
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Chemistry ,QD1-999 - Published
- 2019
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7. Intrasaccular flow disruption (WEB) of a large wide-necked basilar apex aneurysm using PulseRider-assistance
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Kazim H. Narsinh, M. Travis Caton, Nausheen F. Mahmood, Randall T. Higashida, Van V. Halbach, Steven W. Hetts, Matthew R. Amans, Christopher F. Dowd, and Daniel L. Cooke
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Basilar apex aneurysm ,Wide-necked ,Intrasaccular flow disruption ,Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Large, wide-necked basilar apex aneurysms are difficult to treat. Microsurgical clipping can result in neurologic morbidity and mortality. Endovascular treatment often leaves remnants that need retreatment and/or stent placement with dual antiplatelet therapy. The Woven EndoBridge (WEB) is an intrasaccular flow disruption device that can be used without dual antiplatelet therapy. However, the WEB cannot typically be used in large or giant aneurysms > 10 mm because the largest diameter device is the 11 × 9.6 mm single layer sphere (SLS). We present a case in which we use a PulseRider aneurysm neck reconstruction device in the basilar artery to assist in WEB deployment within a 22 mm basilar apex aneurysm with 14 mm neck, thereby permitting aspirin monotherapy postoperatively.
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- 2021
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8. Effective Estimation of Ligand-Binding Affinity Using Biased Sampling Method
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Son Tung Ngo, Khanh B. Vu, Le Minh Bui, and Van V. Vu
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Chemistry ,QD1-999 - Published
- 2019
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9. Solution structure of the reduced active site of a starch-active polysaccharide monooxygenase from Neurospora crassa
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Chinh N. Le, Han Phan, Duy P. Tran-Le, Diem H. Tran, Erik R. Farquhar, and Van V. Vu
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oxygen activation ,polysaccharide monooxygenase ,X-ray absorption spectroscopy ,Science - Abstract
X-ray absorption spectroscopy (XAS) was utilized to gain insights into the structure and electronic properties of the reduced copper active site in NCU08746, a polysaccharide monooxygenase (PMO) from Neurospora crassa that activates O2 to cleave glycosidic linkages in starch. The reaction of NCU08746 likely starts with binding of O2 to the copper(I) center. However, the solution structure of the reduced active site in NCU08746 has not been properly elucidated. In this study, we prepared Cu(I)-NCU08746 in solution, which was snap-frozen to preserve the solution structure of the copper(I) active site prior to XAS analysis. Results show that the copper(I) center in Cu(I)-NCU08746 exhibits a 4-coordinate geometry, which is different from the 3-coordinate geometry observed for some other PMOs. This difference likely arises from the coordination of the active site tyrosine residue and could contribute to the difference in activity between NCU08746 and other PMOs.
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- 2018
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10. Endovascular biopsy: Strategy for analyzing gene expression profiles of individual endothelial cells obtained from human vessels
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Zhengda Sun, Devon A. Lawson, Elizabeth Sinclair, Chih-Yang Wang, Ming-Derg Lai, Steven W. Hetts, Randall T. Higashida, Christopher F. Dowd, Van V. Halbach, Zena Werb, Hua Su, and Daniel L. Cooke
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Targeted endothelial cell sampling ,Single cell quantitative RT-PCR ,Gene expression of artery endothelial cells ,Biotechnology ,TP248.13-248.65 - Abstract
Purpose: To develop a strategy of achieving targeted collection of endothelial cells (ECs) by endovascular methods and analyzing the gene expression profiles of collected single ECs. Methods and results: 134 ECs and 37 leukocytes were collected from four patients' intra-iliac artery endovascular guide wires by fluorescence activated cell sorting (FACS) and analyzed by single-cell quantitative RT-PCR for expression profile of 48 genes. Compared to CD45+ leukocytes, the ECs expressed higher levels (p
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- 2015
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11. Intra-Arterial MR Perfusion Imaging of Meningiomas: Comparison to Digital Subtraction Angiography and Intravenous MR Perfusion Imaging.
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Mark A Lum, Alastair J Martin, Matthew D Alexander, David B McCoy, Daniel L Cooke, Prasheel Lillaney, Parham Moftakhar, Matthew R Amans, Fabio Settecase, Andrew Nicholson, Christopher F Dowd, Van V Halbach, Randall T Higashida, Michael W McDermott, David Saloner, and Steven W Hetts
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Medicine ,Science - Abstract
To evaluate the ability of IA MR perfusion to characterize meningioma blood supply.Studies were performed in a suite comprised of an x-ray angiography unit and 1.5T MR scanner that permitted intraprocedural patient movement between the imaging modalities. Patients underwent intra-arterial (IA) and intravenous (IV) T2* dynamic susceptibility MR perfusion immediately prior to meningioma embolization. Regional tumor arterial supply was characterized by digital subtraction angiography and classified as external carotid artery (ECA) dural, internal carotid artery (ICA) dural, or pial. MR perfusion data regions of interest (ROIs) were analyzed in regions with different vascular supply to extract peak height, full-width at half-maximum (FWHM), relative cerebral blood flow (rCBF), relative cerebral blood volume (rCBV), and mean transit time (MTT). Linear mixed modeling was used to identify perfusion curve parameter differences for each ROI for IA and IV MR imaging techniques. IA vs. IV perfusion parameters were also directly compared for each ROI using linear mixed modeling.18 ROIs were analyzed in 12 patients. Arterial supply was identified as ECA dural (n = 11), ICA dural (n = 4), or pial (n = 3). FWHM, rCBV, and rCBF showed statistically significant differences between ROIs for IA MR perfusion. Peak Height and FWHM showed statistically significant differences between ROIs for IV MR perfusion. RCBV and MTT were significantly lower for IA perfusion in the Dural ECA compared to IV perfusion. Relative CBF in IA MR was found to be significantly higher in the Dural ICA region and MTT significantly lower compared to IV perfusion.
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- 2016
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12. Endovascular Therapy for Intracranial Giant Cell Arteritis : Systematic Review, Technical Considerations and the Effect of Intra-arterial Calcium Channel Blockers.
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Caton, M Travis, Mark, Ian T, Narsinh, Kazim H, Baker, Amanda, Cooke, Daniel L, Hetts, Steven W, Dowd, Christopher F, Halbach, Van V, Higashida, Randall T, Ko, Nerissa U, Chung, Sharon A, and Amans, Matthew R
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Humans ,Constriction ,Pathologic ,Calcium Channel Blockers ,Treatment Outcome ,Angioplasty ,Angioplasty ,Balloon ,Stents ,Aged ,Middle Aged ,Giant Cell Arteritis ,Cerebral ischemia ,Intracranial stenosis ,Vasculitis ,Verapamil ,Cardiovascular ,Stroke ,Brain Disorders ,Neurosciences - Abstract
BackgroundGiant cell arteritis (GCA) is a systemic vasculitis that may cause ischemic stroke. Rarely, GCA can present with aggressive intracranial stenoses, which are refractory to medical therapy. Endovascular treatment (EVT) is a possible rescue strategy to prevent ischemic complications in intracranial GCA but the safety and efficacy of EVT in this setting are not well-described.MethodsA systematic literature review was performed to identify case reports and series with individual patient-level data describing EVT for intracranial GCA. The clinical course, therapeutic considerations, and technique of seven endovascular treatments in a single patient from the authors' experience are presented.ResultsThe literature review identified 9 reports of 19 treatments, including percutaneous transluminal angioplasty (PTA) with or without stenting, in 14 patients (mean age 69.6 ± 6.3 years). Out of 12 patients 8 (66.7%) with sufficient data had > 1 pre-existing cardiovascular risk factor. All patients had infarction on MRI while on glucocorticoids and 7/14 (50%) progressed despite adjuvant immunosuppressive agents. Treatment was PTA alone in 15/19 (78.9%) cases and PTA + stent in 4/19 (21.1%). Repeat treatments were performed in 4/14 (28.6%) of patients (PTA-only). Non-flow limiting dissection was reported in 2/19 (10.5%) of treatments. The indications, technical details, and results of PTA are discussed in a single illustrative case. We report the novel use of intra-arterial calcium channel blocker infusion (verapamil) as adjuvant to PTA and as monotherapy, resulting in immediate improvement in cerebral blood flow.ConclusionEndovascular treatment, including PTA with or without stenting or calcium channel blocker infusion, may be effective therapies in medically refractory GCA with intracranial stenosis.
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- 2022
13. Endovascular treatment strategy, technique, and outcomes for dural arteriovenous fistulas of the marginal sinus region.
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Caton, Michael Travis, Narsinh, Kazim H, Baker, Amanda, Hetts, Steven W, Cooke, Daniel L, Higashida, Randall T, Dowd, Christopher F, Halbach, Van V, and Amans, Matthew R
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Cranial Sinuses ,Humans ,Central Nervous System Vascular Malformations ,Treatment Outcome ,Embolization ,Therapeutic ,Retrospective Studies ,Endovascular Procedures ,coil ,fistula ,liquid embolic material ,posterior fossa ,technique - Abstract
BackgroundDural arteriovenous fistulas (AVF) of the foramen magnum region (FMR) are technically challenging lesions to treat. Transvenous (TV), transarterial (TA), and surgical approaches have been described, but the optimum treatment strategy is not defined.ObjectiveTo report treatment strategies and outcomes for FMR-AVF at a single, high-volume referral center.MethodsA retrospective review from January 2010 to August 2020 identified patients with FMR-AVF at a single referral center. Angiographic features, treatment (observation, endovascular, surgical), and follow-up of angiographic and clinical results were recorded. The technical aspects of TV embolization are then presented in detail.Results29 FMR-AVF were identified in 28 patients. Of these, 24/29 (82.8%) were treated and 5/29 (17.2%) were observed. Treatment was endovascular in 21/24 (87.5%), combined (endovascular+surgical) in 2/24 (8.3%), and surgical in 1/24 (4.2%). Endovascular treatments were 76.2% TV, 14.3% TA, and 9.5% combined TV/TA. Sufficient follow-up data were available for 20/28 (71.4%) with mean follow-up of 16.8 months. No AVF recurrence was seen for TA/TV, combined endovascular/surgical, or surgical groups, and there was one recurrence (7.1%) in the TV group. Symptomatic improvement was seen in all groups: TV (71.4% complete, 28.6% partial), TA (66.7% complete, 33.3% no follow-up), TV+TA (100% partial), endovascular/surgical (100% complete), and surgical (100% partial). Minor non-neurologic complications included 1/14 (7.1%) in the TV group and 1/3 (33.3%) in the TA/TV group.ConclusionEndovascular treatment is safe and effective for most FMR-AVF. TV embolization has a high cure rate with few complications.
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- 2022
14. Friction Characteristics of Two-Dimensional Hybrid Organic-Inorganic Perovskites
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Van, V. K. H., DelRio, F. W., Tu, Q., and Chung, K.-H.
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- 2023
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15. Intrasaccular flow disruption (WEB) of a large wide-necked basilar apex aneurysm using PulseRider-assistance.
- Author
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Narsinh, Kazim H, Caton, M Travis, Mahmood, Nausheen F, Higashida, Randall T, Halbach, Van V, Hetts, Steven W, Amans, Matthew R, Dowd, Christopher F, and Cooke, Daniel L
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Basilar apex aneurysm ,Intrasaccular flow disruption ,Wide-necked ,Rare Diseases ,Assistive Technology ,Neurosciences ,Bioengineering - Abstract
Large, wide-necked basilar apex aneurysms are difficult to treat. Microsurgical clipping can result in neurologic morbidity and mortality. Endovascular treatment often leaves remnants that need retreatment and/or stent placement with dual antiplatelet therapy. The Woven EndoBridge (WEB) is an intrasaccular flow disruption device that can be used without dual antiplatelet therapy. However, the WEB cannot typically be used in large or giant aneurysms > 10 mm because the largest diameter device is the 11 × 9.6 mm single layer sphere (SLS). We present a case in which we use a PulseRider aneurysm neck reconstruction device in the basilar artery to assist in WEB deployment within a 22 mm basilar apex aneurysm with 14 mm neck, thereby permitting aspirin monotherapy postoperatively.
- Published
- 2021
16. Combined Use of X-ray Angiography and Intraprocedural MRI Enables Tissue-based Decision Making Regarding Revascularization during Acute Ischemic Stroke Intervention.
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Narsinh, Kazim H, Kilbride, Bridget F, Mueller, Kerstin, Murph, Daniel, Copelan, Alexander, Massachi, Jonathan, Vitt, Jeffrey, Sun, Chung-Huan, Bhat, Himanshu, Amans, Matthew R, Dowd, Christopher F, Halbach, Van V, Higashida, Randall T, Moore, Terilyn, Wilson, Mark W, Cooke, Daniel L, and Hetts, Steven W
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Humans ,Magnetic Resonance Imaging ,Cerebral Angiography ,Thrombectomy ,Intraoperative Period ,Retrospective Studies ,Decision Making ,Aged ,Middle Aged ,Infant ,Newborn ,Female ,Male ,Stroke ,Ischemic Stroke ,Clinical Research ,Biomedical Imaging ,Brain Disorders ,Neurosciences ,Medical and Health Sciences ,Nuclear Medicine & Medical Imaging - Abstract
Background For patients with acute ischemic stroke undergoing endovascular mechanical thrombectomy with x-ray angiography, the use of adjuncts to maintain vessel patency, such as stents or antiplatelet medications, can increase risk of periprocedural complications. Criteria for using these adjuncts are not well defined. Purpose To evaluate use of MRI to guide critical decision making by using a combined biplane x-ray neuroangiography 3.0-T MRI suite during acute ischemic stroke intervention. Materials and Methods This retrospective observational study evaluated consecutive patients undergoing endovascular intervention for acute ischemic stroke between July 2019 and May 2020 who underwent either angiography with MRI or angiography alone. Cerebral tissue viability was assessed by using MRI as the reference standard. For statistical analysis, Fisher exact test and Student t test were used to compare groups. Results Of 47 patients undergoing acute stroke intervention, 12 patients (median age, 69 years; interquartile range, 60-77 years; nine men) underwent x-ray angiography with MRI whereas the remaining 35 patients (median age, 80 years; interquartile range, 68-86 years; 22 men) underwent angiography alone. MRI results influenced clinical decision making in one of three ways: whether or not to perform initial or additional mechanical thrombectomy, whether or not to place an intracranial stent, and administration of antithrombotic or blood pressure medications. In this initial experience, decision making during endovascular acute stroke intervention in the combined angiography-MRI suite was better informed at MRI, such that therapy was guided in real time by the viability of the at-risk cerebral tissue. Conclusion Integrating intraprocedural 3.0-T MRI into acute ischemic stroke treatment was feasible and guided decisions of whether or not to continue thrombectomy, to place stents, or to administer antithrombotic medication or provide blood pressure medications. © RSNA, 2021 Online supplemental material is available for this article. See also the editorial by Lev and Leslie-Mazwi in this issue.
- Published
- 2021
17. Upgrading nirmatrelvir to inhibit SARS-CoV-2 Mpro via DeepFrag and free energy calculations
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Tam, Nguyen Minh, Nguyen, Trung Hai, Pham, Minh Quan, Hong, Nam Dao, Tung, Nguyen Thanh, Vu, Van V., Quang, Duong Tuan, and Ngo, Son Tung
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- 2023
- Full Text
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18. Asymptomatic rotational vertebral artery compression in a child due to head positioning for cranial surgery: illustrative case
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Caton, M Travis, Narsinh, Kazim, Baker, Amanda, Abla, Adib A, Roland, Jarod L, Halbach, Van V, Fox, Christine K, Fullerton, Heather J, and Hetts, Steven W
- Abstract
BACKGROUNDThe authors recently reported a series of children with vertebral artery (VA) compression during head turning who presented with recurrent posterior circulation stroke. Whether VA compression occurs during head positioning for cranial surgery is unknown.OBSERVATIONSThe authors report a case of a child with incidental rotational occlusion of the VA observed during surgical head positioning for treatment of an intracranial arteriovenous fistula. Intraoperative angiography showed dynamic V3 occlusion at the level of C2 with distal reconstitution via a muscular branch “jump” collateral, supplying reduced flow to the V4 segment. She had no clinical history or imaging suggesting acute or prior stroke. Sequential postoperative magnetic resonance imaging scans demonstrated signal abnormality of the left rectus capitus muscle, suggesting ischemic edema.LESSONSThis report demonstrates that rotational VA compression during neurosurgical head positioning can occur in children but may be asymptomatic due to the presence of muscular VA–VA “jump” collaterals and contralateral VA flow. Although unilateral VA compression may be tolerated by children with codominant VAs, diligence when rotating the head away from a dominant VA is prudent during patient positioning to avoid posterior circulation ischemia or thromboembolism.
- Published
- 2021
19. Endovascular Biopsy of Vertebrobasilar Aneurysm in Patient With Polyarteritis Nodosa.
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Narsinh, Kazim H, Narsinh, Kamileh, McCoy, David B, Sun, Zhengda, Halabi, Cathra, Meisel, Karl, Tihan, Tarik, Chaganti, Krishna, Amans, Matthew R, Halbach, Van V, Higashida, Randall T, Hetts, Steven W, Dowd, Christopher F, Winkler, Ethan A, Abla, Adib A, Nowakowski, Tomasz J, and Cooke, Daniel L
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endovascular biopsy ,fusiform aneurysm ,gene expression profile ,polyarteritis nodosa ,single cell RNA sequencing ,Genetics ,Prevention ,Brain Disorders ,Neurosciences ,Clinical Research ,2.1 Biological and endogenous factors ,Aetiology ,Cardiovascular ,Clinical Sciences ,Psychology - Abstract
Background and Purpose: The management of unruptured intracranial aneurysms remains controversial. The decisions to treat are heavily informed by estimated risk of bleeding. However, these estimates are imprecise, and better methods for stratifying the risk or tailoring treatment strategy are badly needed. Here, we demonstrate an initial proof-of-principle concept for endovascular biopsy to identify the key molecular pathways and gene expression changes associated with aneurysm formation. We couple this technique with single cell RNA sequencing (scRNAseq) to develop a roadmap of the pathogenic changes of a dolichoectatic vertebrobasilar aneurysm in a patient with polyarteritis nodosa. Methods: Endovascular biopsy and fluorescence activated cell sorting was used to isolate the viable endothelial cells (ECs) using the established techniques. A single cell RNA sequencing (scRNAseq) was then performed on 24 aneurysmal ECs and 23 patient-matched non-aneurysmal ECs. An integrated panel of bioinformatic tools was applied to determine the differential gene expression, enriched signaling pathways, and cell subpopulations hypothesized to drive disease pathogenesis. Results: We identify a subset of 7 (29%) aneurysm-specific ECs with a distinct gene expression signature not found in the patient-matched control ECs. A gene set enrichment analysis identified these ECs to have increased the expression of genes regulating the leukocyte-endothelial cell adhesion, major histocompatibility complex (MHC) class I, T cell receptor recycling, tumor necrosis factor alpha (TNFα) response, and interferon gamma signaling. A histopathologic analysis of a different intracranial aneurysm that was later resected yielded a diagnosis of polyarteritis nodosa and positive staining for TNFα. Conclusions: We demonstrate feasibility of applying scRNAseq to the endovascular biopsy samples and identify a subpopulation of ECs associated with cerebral aneurysm in polyarteritis nodosa. Endovascular biopsy may be a safe method for deriving insight into the disease pathogenesis and tailoring the personalized treatment approaches to intracranial aneurysms.
- Published
- 2021
20. Brain Arteriovenous Malformation Recurrence After Apparent Microsurgical Cure: Increased Risk in Children Who Present With Arteriovenous Malformation Rupture.
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Copelan, Alexander, Drocton, Gerald, Caton, M Travis, Smith, Eric R, Cooke, Daniel L, Nelson, Jeffrey, Abla, Adib A, Fox, Christine, Amans, Matthew R, Dowd, Christopher F, Halbach, Van V, Higashida, Randall T, Lawton, Michael T, Kim, Helen, Fullerton, Heather J, Gupta, Nalin, Hetts, Steven W, and UCSF Center For Cerebrovascular Research and UCSF Pediatric Brain Center
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UCSF Center For Cerebrovascular Research and UCSF Pediatric Brain Center ,Brain ,Humans ,Intracranial Arteriovenous Malformations ,Arteriovenous Fistula ,Rupture ,Recurrence ,Angiography ,Digital Subtraction ,Treatment Outcome ,Microsurgery ,Neurosurgical Procedures ,Retrospective Studies ,Adolescent ,Child ,Child ,Preschool ,Female ,Male ,Young Adult ,angiography ,arteriovenous malformation ,brain ,intracranial hemorrhages ,pediatrics ,Stroke ,Prevention ,Congenital Structural Anomalies ,Pediatric ,Neurosciences ,Clinical Research ,Patient Safety ,Cardiorespiratory Medicine and Haematology ,Clinical Sciences ,Neurology & Neurosurgery - Abstract
Background and purposeDo children have an increased risk for brain arteriovenous malformation (AVM) recurrence compared with adults and does this risk vary depending on initial presentation with AVM rupture?MethodsWe retrospectively studied 115 patients initially presenting with brain AVM under age 25 years who underwent complete surgical resection of the AVM as documented by digital subtraction angiography (DSA) and had delayed follow-up DSA to evaluate for AVM recurrence after apparent initial cure.ResultsThe mean time from baseline DSA to follow-up DSA was 2.3 years, ranging from 0 to 15 years. Twelve patients (10.4% of the 115 patient cohort and 16.7% of 72 patients with hemorrhage at initial presentation) demonstrated AVM recurrence on follow-up DSA. All patients with recurrence initially presented with intracranial hemorrhage, and intracranial hemorrhage was a significant predictor of recurrence (log rank P=0.037). Among patients with initial hemorrhage, the 5-year recurrence rate was 17.8% (95% CI, 8.3%-35.7%). All recurrences occurred in patients who were children at the time of their initial presentation; the oldest was 15 years of age at the time of initial AVM surgery. The 5-year recurrence rate for children (0-18 years of age) with an initial presentation of hemorrhage was 21.4% (95% CI, 10.1%-41.9%). Using Cox regression, we found the risk of AVM recurrence decreased by 14% per each year increase in age at the time of initial surgical resection (hazard ratio=0.86 [95% CI, 0.75-0.99]; P=0.031).ConclusionsThere is a high rate of recurrence of apparently cured brain AVMs in children who initially present with AVM rupture. Imaging follow-up is warranted to prevent re-rupture.
- Published
- 2020
21. Single-center series of boys with recurrent strokes and rotational vertebral arteriopathy.
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Fox, Christine K, Fullerton, Heather J, Hetts, Steven W, Halbach, Van V, Auguste, Kurtis I, Lawton, Michael T, and Gupta, Nalin
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Cervical Vertebrae ,Vertebral Artery ,Humans ,Recurrence ,Fibrinolytic Agents ,Angiography ,Digital Subtraction ,Vascular Surgical Procedures ,Rotation ,Adolescent ,Child ,Male ,Stroke ,Pediatric ,Neurosciences ,Clinical Research ,Brain Disorders ,Clinical Sciences ,Cognitive Sciences ,Neurology & Neurosurgery - Abstract
ObjectiveTo describe a pediatric stroke syndrome with chronic focal vertebral arteriopathy adjacent to cervical abnormalities.MethodsAt a single pediatric stroke center, we identified consecutive children with stroke and vertebral arteriopathy of the V3 segment with adjacent cervical bony or soft tissue abnormalities. We abstracted clinical presentation, treatment, and follow-up data from medical charts.ResultsFrom 2005 to 2019, 10 children (all boys, ages 6-16 years) presented with posterior circulation strokes and vertebral arteriopathy with adjacent cervical pathology. Two children had bony abnormalities: one had a congenital arcuate foramen and one had os odontoideum with cervical instability. In children without bony pathology, vertebral artery narrowing during contralateral head rotation was visualized by digital subtraction angiography. Eight boys had recurrent ischemic events despite anti-thrombotic treatment (including 5 with multiple recurrences) and were treated surgically to prevent additional stroke. Procedures included vertebral artery decompression (n = 6), endovascular stent and spinal fusion (n = 1), and vertebral artery endovascular occlusion (n = 1). In boys treated with decompression, cervical soft tissue abnormalities (ruptured atlantoaxial bursa, ruptured joint capsule, or connective tissue scarring) were directly visualized during open surgery. No other etiology for stroke or dissection was found in any of the cases. Two boys without recurrent stroke were treated with activity restriction and antithrombotics. At a median follow-up of 51 months (range 17-84), there have been no additional recurrences.ConclusionsChildren with V3 segmental vertebral arteriopathy frequently have stroke recurrence despite antithrombotics. Cervical bone imaging and angiography with neck rotation can identify underlying pathology.
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- 2020
22. Morphology of a Transmembrane Aβ42 Tetramer via REMD Simulations.
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Son Tung Ngo 0002, Trung Hai Nguyen, and Van V. Vu
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- 2023
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23. Graphene woven fabric-polydimethylsiloxane piezoresistive films for smart multi-stimuli responses
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Tung, Tran T., Tran, Manh T., Pereira, Ana L.C., Cordeiro, Cristiano M.B., Nguyen, Duc D., Tai, Nyan-Hwa, Tran, Van V., Hsu, Chia-Chen, Joshi, Prerna, Yoshimura, Masamichi, Feller, Jean F., Castro, Mickael, Hassan, Kamul, Nine, Md J., Stanley, Nathan, and Losic, Dusan
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- 2023
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24. Searching for potential inhibitors of SARS-COV-2 main protease using supervised learning and perturbation calculations
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Nguyen, Trung Hai, Tam, Nguyen Minh, Tuan, Mai Van, Zhan, Peng, Vu, Van V., Quang, Duong Tuan, and Ngo, Son Tung
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- 2023
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25. Substrate selectivity in starch polysaccharide monooxygenases
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Vu, Van V, Hangasky, John A, Detomasi, Tyler C, Henry, Skylar JW, Ngo, Son Tung, Span, Elise A, and Marletta, Michael A
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1.1 Normal biological development and functioning ,Underpinning research ,Generic health relevance ,Amylose ,Binding Sites ,Catalytic Domain ,Fungal Proteins ,Mixed Function Oxygenases ,Molecular Docking Simulation ,Neurospora crassa ,Oxidation-Reduction ,Protein Conformation ,alpha-Helical ,Sordariales ,Starch ,Substrate Specificity ,carbohydrate-binding protein ,polysaccharide ,metalloprotein ,copper ,copper monooxygenase ,amylose ,auxiliary activity (AA) enzyme ,oxygenase ,polysaccharide monooxygenase ,starch ,Chemical Sciences ,Biological Sciences ,Medical and Health Sciences ,Biochemistry & Molecular Biology - Abstract
Degradation of polysaccharides is central to numerous biological and industrial processes. Starch-active polysaccharide monooxygenases (AA13 PMOs) oxidatively degrade starch and can potentially be used with industrial amylases to convert starch into a fermentable carbohydrate. The oxidative activities of the starch-active PMOs from the fungi Neurospora crassa and Myceliophthora thermophila, NcAA13 and MtAA13, respectively, on three different starch substrates are reported here. Using high-performance anion-exchange chromatography coupled with pulsed amperometry detection, we observed that both enzymes have significantly higher oxidative activity on amylose than on amylopectin and cornstarch. Analysis of the product distribution revealed that NcAA13 and MtAA13 more frequently oxidize glycosidic linkages separated by multiples of a helical turn consisting of six glucose units on the same amylose helix. Docking studies identified important residues that are involved in amylose binding and suggest that the shallow groove that spans the active-site surface of AA13 PMOs favors the binding of helical amylose substrates over nonhelical substrates. Truncations of NcAA13 that removed its native carbohydrate-binding module resulted in diminished binding to amylose, but truncated NcAA13 still favored amylose oxidation over other starch substrates. These findings establish that AA13 PMOs preferentially bind and oxidize the helical starch substrate amylose. Moreover, the product distributions of these two enzymes suggest a unique interaction with starch substrates.
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- 2019
26. The effect of preoperative embolization and flow dynamics on resection of brain arteriovenous malformations.
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Donzelli, Grace F, Nelson, Jeffrey, McCoy, David, McCulloch, Charles E, Hetts, Steven W, Amans, Matthew R, Dowd, Christopher F, Halbach, Van V, Higashida, Randall T, Lawton, Michael T, Kim, Helen, and Cooke, Daniel L
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cerebrovascular procedures ,digital subtraction angiography ,embolization ,intracranial arteriovenous malformations ,vascular disorders ,Clinical Research ,Clinical Sciences ,Neurosciences ,Neurology & Neurosurgery - Abstract
ObjectivePreoperative embolization of brain arteriovenous malformations (AVMs) is performed to facilitate resection, although its impact on surgical performance has not been clearly defined. The authors tested for associations between embolization and surgical performance metrics.MethodsThe authors analyzed AVM cases resected by one neurosurgeon from 2006 to 2017. They tested whether cases with and without embolization differed from one another with respect to patient and AVM characteristics using t-tests for continuous variables and Fisher's exact tests for categorical variables. They used simple and multivariable regression models to test whether surgical outcomes (blood loss, resection time, surgical clip usage, and modified Rankin Scale [mRS] score) were associated with embolization. Additional regression analyses integrated the peak arterial afferent contrast normalized for the size of the region of interest (Cmax/ROI) into models as an additional predictor.ResultsThe authors included 319 patients, of whom 151 (47%) had preoperative embolization. Embolized AVMs tended to be larger (38% with diameter > 3 cm vs 19%, p = 0.001), less likely to have hemorrhaged (48% vs 63%, p = 0.013), or be diffuse (19% vs 29%, p = 0.045). Embolized AVMs were more likely to have both superficial and deep venous drainage and less likely to have exclusively deep drainage (32% vs 17% and 12% vs 23%, respectively; p = 0.002). In multivariable analysis, embolization was not a significant predictor of blood loss or mRS score changes, but did predict longer operating times (+29 minutes, 95% CI 2-56 minutes; p = 0.034) and increased clip usage (OR 2.61, 95% CI 1.45-4.71; p = 0.001). Cmax/ROI was not a significant predictor, although cases with large Cmax/ROI tended to have longer procedure times (+25 minutes per doubling of Cmax/ROI, 95% CI 0-50 minutes; p = 0.051).ConclusionsIn this series, preoperative embolization was associated with longer median resection times and had no association with intraoperative blood loss or mRS score changes.
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- 2019
27. Improving ligand-ranking of AutoDock Vina by changing the empirical parameters.
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T. Ngoc Han Pham, Trung Hai Nguyen, Nguyen Minh Tam, Thien Y. Vu, Nhat Truong Pham, Nguyen Truong Huy, Binh Khanh Mai, Nguyen Thanh Tung, Minh Quan Pham, Van V. Vu, and Son Tung Ngo 0002
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- 2022
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28. Sustainable Methods to Control Pyricularia oryzae, the Causal Agent of Rice Blast Disease
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Sella, Luca, Vu, Van V., Quarantin, Alessandra, Caracciolo, Rocco, Govind, Rakshita, Bolzonello, Angela, Tundo, Silvio, De Zotti, Marta, Favaron, Francesco, Nguyen, Hoang D., Le, Quynh L., Nguyen, Trung T., Do, Le T., Nguyen, Hung M., Riva Sanseverino, Eleonora, Editor-in-Chief, Amenta, Carlo, Series Editor, Carapezza, Marco, Series Editor, Chiodi, Marcello, Series Editor, Laghi, Andrea, Series Editor, Maresca, Bruno, Series Editor, Micale, Giorgio Domenico Maria, Series Editor, Mocciaro Li Destri, Arabella, Series Editor, Öchsner, Andreas, Series Editor, Piva, Mariacristina, Series Editor, Russo, Antonio, Series Editor, Seel, Norbert M., Series Editor, and Anderle, Mariano, editor
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- 2021
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29. Endovascular Biopsy: In Vivo Cerebral Aneurysm Endothelial Cell Sampling and Gene Expression Analysis
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Cooke, Daniel L, McCoy, David B, Halbach, Van V, Hetts, Steven W, Amans, Matthew R, Dowd, Christopher F, Higashida, Randall T, Lawson, Devon, Nelson, Jeffrey, Wang, Chih-Yang, Kim, Helen, Werb, Zena, McCulloch, Charles, Hashimoto, Tomoki, Su, Hua, and Sun, Zhengda
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Biotechnology ,Brain Disorders ,Cerebrovascular ,Genetics ,Cardiovascular ,Biopsy ,Endoglin ,Endothelial Cells ,Endothelium ,Vascular ,Endovascular Procedures ,Female ,Flow Cytometry ,Gene Expression ,Humans ,Intracranial Aneurysm ,Male ,Matrix Metalloproteinase 2 ,Receptor ,TIE-1 ,Vascular Endothelial Growth Factor A ,von Willebrand Factor ,Cerebral aneurysm ,Vascular biology ,Gene expression ,Cerebrovascular procedures ,Endothelium ,Public Health and Health Services ,Clinical sciences - Abstract
There is limited data describing endothelial cell (EC) gene expression between aneurysms and arteries partly because of risks associated with surgical tissue collection. Endovascular biopsy (EB) is a lower risk alternative to conventional surgical methods, though no such efforts have been attempted for aneurysms. We sought (1) to establish the feasibility of EB to isolate viable ECs by fluorescence-activated cell sorting (FACS), (2) to characterize the differences in gene expression by anatomic location and rupture status using single-cell qPCR, and (3) to demonstrate the utility of unsupervised clustering algorithms to identify cell subpopulations. EB was performed in 10 patients (5 ruptured, 5 non-ruptured). FACS was used to isolate the ECs and single-cell qPCR was used to quantify the expression of 48 genes. Linear mixed models and exploratory multilevel component analysis (MCA) and self-organizing maps (SOMs) were performed to identify possible subpopulations of cells. ECs were collected from all aneurysms and there were no adverse events. A total of 437 ECs was collected, 94 (22%) of which were aneurysmal cells and 319 (73%) demonstrated EC-specific gene expression. Ruptured aneurysm cells, relative controls, yielded a median p value of 0.40 with five genes (10%) with p values
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- 2018
30. China’s green watch program: beyond greenwashing
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Miller, Van V., Su, Qi, Perez-Batres, Luis A., and Pisani, Michael J.
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- 2020
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31. Fabrication of superhydrophobic surface using one-step chemical treatment
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Giang, Ha N., Nguyen, Truyen X., Huynh, Tien V., Tran, Lam H., Nguyen, Hoa N., Vu, Khanh B., and Vu, Van V.
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- 2020
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32. How do magnetic, structural, and electronic criteria of aromaticity relate to HOMO – LUMO gap? An evaluation for graphene quantum dot and its derivatives
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Vu, Khanh B., Le Phuc Nhi, Truong, Vu, Van V., and Tung Ngo, Son
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- 2020
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33. Nano-plastics and their analytical characterisation and fate in the marine environment: From source to sea
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Gangadoo, Sheeana, Owen, Stephanie, Rajapaksha, Piumie, Plaisted, Katie, Cheeseman, Samuel, Haddara, Hajar, Truong, Vi Khanh, Ngo, Son Tung, Vu, Van V., Cozzolino, Daniel, Elbourne, Aaron, Crawford, Russell, Latham, Kay, and Chapman, James
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- 2020
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34. Discovering Neuraminidase Inhibitors via Computational and Experimental Studies
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Nguyen, Trung Hai, primary, Pham, Ngoc Quynh Anh, additional, Thai, Quynh Mai, additional, Van, Van V., additional, Ngo, Son Tung, additional, and Horng, Jim-Tong, additional
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- 2024
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35. Pediatric intracranial dural arteriovenous fistulas: age-related differences in clinical features, angioarchitecture, and treatment outcomes.
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Hetts, Steven W, Moftakhar, Parham, Maluste, Neil, Fullerton, Heather J, Cooke, Daniel L, Amans, Matthew R, Dowd, Christopher F, Higashida, Randall T, and Halbach, Van V
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Humans ,Central Nervous System Vascular Malformations ,Treatment Outcome ,Retrospective Studies ,Cohort Studies ,Follow-Up Studies ,Age Factors ,Adolescent ,Child ,Child ,Preschool ,Infant ,Infant ,Newborn ,Female ,Male ,AVM = arteriovenous malformation ,CCA = common carotid artery ,CHF = congestive heart failure ,CI = confidence interval ,DAVF ,DAVF = dural arteriovenous fistula ,DSA = digital subtraction angiogram ,DSM = dural sinus malformation ,NGAVF = non-Galenic pial arteriovenous fistula ,OR = odds ratio ,SSS = superior sagittal sinus ,VOGM = vein of Galen malformation ,cardiopulmonary ,dural arteriovenous fistula ,mRS = modified Rankin Scale ,neurological deficit ,vascular disorders ,Pediatric ,Clinical Research ,Neurosciences ,Paediatrics and Reproductive Medicine ,Neurology & Neurosurgery - Abstract
OBJECTIVE Intracranial dural arteriovenous fistulas (DAVFs) are rare in children. This study sought to better characterize DAVF presentation, angioarchitecture, and treatment outcomes. METHODS Children with intracranial DAVFs between 1986 and 2013 were retrospectively identified from the neurointerventional database at the authors' institution. Demographics, clinical presentation, lesion angioarchitecture, treatment approaches, angiographic outcomes, and clinical outcomes were assessed. RESULTS DAVFs constituted 5.7% (22/423) of pediatric intracranial arteriovenous shunting lesions. Twelve boys and 10 girls presented between 1 day and 18 years of age; boys presented at a median of 1.3 years and girls presented at a median of 4.9 years. Four of 8 patients ≤ 1 year of age presented with congestive heart failure compared with 0/14 patients > 1 year of age (p = 0.01). Five of 8 patients ≤ 1 year old presented with respiratory distress compared with 0/14 patients > 1 year old (p = 0.0021). Ten of 14 patients > 1 year old presented with focal neurological deficits compared with 0/8 patients ≤ 1 year old (p = 0.0017). At initial angiography, 16 patients harbored a single intracranial DAVF and 6 patients had 2-6 DAVFs. Eight patients (38%) experienced DAVF obliteration by the end of treatment. Good clinical outcome (modified Rankin Scale score 0-2) was documented in 77% of patients > 1 year old at presentation compared with 57% of patients ≤ 1 year old at presentation. Six patients (27%) died. CONCLUSIONS Young children with DAVFs presented predominantly with cardiopulmonary symptoms, while older children presented with focal neurological deficits. Compared with other pediatric vascular shunts, DAVFs had lower rates of angiographic obliteration and poorer clinical outcomes.
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- 2016
36. Bypass Surgery for the Treatment of Dolichoectatic Basilar Trunk Aneurysms: A Work in Progress.
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Lawton, Michael T, Abla, Adib A, Rutledge, W Caleb, Benet, Arnau, Zador, Zsolt, Rayz, Vitaliy L, Saloner, David, and Halbach, Van V
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Vertebral Artery ,Humans ,Intracranial Aneurysm ,Magnetic Resonance Imaging ,Treatment Outcome ,Vascular Surgical Procedures ,Microsurgery ,Retrospective Studies ,Surgical Instruments ,Adult ,Aged ,Middle Aged ,Female ,Male ,Stroke ,Clinical Research ,Bioengineering ,Brain Disorders ,Neurosciences ,Biomedical Imaging ,Cardiovascular ,Good Health and Well Being ,Atherosclerosis ,Basilar artery aneurysm ,Basilar trunk ,Bypass ,Dolichoectasia ,Giant aneurysm ,Fusiform aneurysm ,Revascularization ,Clinical Sciences ,Neurology & Neurosurgery - Abstract
BackgroundThe treatment of dolichoectatic basilar trunk aneurysms has been ineffectual or morbid due to nonsaccular morphology, deep location, and involvement of brainstem perforators. Treatment with bypass surgery has been advocated to eliminate malignant hemodynamics and to stabilize aneurysm growth.ObjectiveTo validate that flow alteration with bypass and parent artery occlusion favorably impacts aneurysm progression.MethodsSurgical management evolved in 3 phases, each with different hemodynamic alterations.ResultsDuring a 17-year period, 37 patients with dolichoectatic basilar trunk aneurysms were retrospectively identified, of whom 21 patients were observed, 12 treated immediately, and 4 selected for treatment after clinical progression. In phase 1, flow reversal was overly thrombogenic, despite heparin (N = 5, final mortality, 100%). In phase 2, flow reduction with intracranial-to-intracranial bypass was safer than flow reversal, but did not prevent progressive aneurysm enlargement (N = 3, final mortality 67%). In phase 3, distal clip occlusion of the basilar trunk aneurysm preserved anterograde flow in the aneurysm without rupture, but reduced flow threatened perforator patency, despite treatment with clopidogrel (N = 8, final mortality 62%).ConclusionShifting treatment strategy for dolichoectatic basilar trunk aneurysms improved surgical (80% to 50%) and final mortalities (100% to 62%), with stabilization of aneurysms in the phase 3 survivors. Good outcomes are determined by perforator preservation and mitigating aneurysm thrombosis. Occlusion techniques with increased distal run-off seem to benefit perforators. The treatment of dolichoectatic basilar trunk aneurysms can advance through concentrated management in dedicated centers, concerted efforts to study morphology and hemodynamics with computational methods, and widespread collection of registry data.Abbreviations4D PC-MRI, time-resolved phase-contrast MRIAICA, anterior inferior cerebellar arteryCE-MRA, high-resolution contrast-enhanced MR angiographyEC-IC, extracranial-to-intracranial bypassMCA, middle cerebral arteryMR, magnetic resonancemRS, modified Rankin ScalePCA, posterior cerebral arteryPICA, posterior inferior cerebellar arterySCA, superior cerebellar arterySTA, superficial temporal arteryVA, vertebral artery.
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- 2016
37. PAX6, brain structure and function in human adults: advanced MRI in aniridia
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Moore, Anthony, Yogarajah, M, Matarin, M, Vollmar, C, Thompson, PJ, Duncan, JS, Symms, M, Moore, AT, Liu, J, Thom, M, and van, V
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- 2016
38. Volume-staged radiosurgery for large arteriovenous malformations: an evolving paradigm.
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Seymour, Zachary A, Sneed, Penny K, Gupta, Nalin, Lawton, Michael T, Molinaro, Annette M, Young, William, Dowd, Christopher F, Halbach, Van V, Higashida, Randall T, and McDermott, Michael W
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Humans ,Intracranial Arteriovenous Malformations ,Postoperative Hemorrhage ,Postoperative Complications ,Magnetic Resonance Imaging ,Treatment Outcome ,Salvage Therapy ,Embolization ,Therapeutic ,Radiosurgery ,Neurosurgical Procedures ,Survival Analysis ,Retrospective Studies ,Follow-Up Studies ,Radiation Dosage ,Adolescent ,Adult ,Aged ,Middle Aged ,Child ,Female ,Male ,Young Adult ,ARE = adverse radiation effect ,AVM ,AVM = arteriovenous malformation ,CI = confidence interval ,CTCAE V4.0 = Common Terminology Criteria for Adverse Events version 4.0 ,HR = hazard ratio ,SM = Spetzler-Martin ,SRS ,SRS = stereotactic radiosurgery ,VRAS = Virginia Radiosurgery AVM Scale ,VS = volume staged ,mRBAS = modified radiosurgery-based AVM score ,radiosurgery ,stereotactic radiosurgery ,volume-staged radiosurgery ,Clinical Research ,Vaccine Related ,Clinical Sciences ,Neurosciences ,Neurology & Neurosurgery - Abstract
OBJECT Large arteriovenous malformations (AVMs) remain difficult to treat, and ideal treatment parameters for volume-staged stereotactic radiosurgery (VS-SRS) are still unknown. The object of this study was to compare VS-SRS treatment outcomes for AVMs larger than 10 ml during 2 eras; Era 1 was 1992-March 2004, and Era 2 was May 2004-2008. In Era 2 the authors prospectively decreased the AVM treatment volume, increased the radiation dose per stage, and shortened the interval between stages. METHODS All cases of VS-SRS treatment for AVM performed at a single institution were retrospectively reviewed. RESULTS Of 69 patients intended for VS-SRS, 63 completed all stages. The median patient age at the first stage of VS-SRS was 34 years (range 9-68 years). The median modified radiosurgery-based AVM score (mRBAS), total AVM volume, and volume per stage in Era 1 versus Era 2 were 3.6 versus 2.7, 27.3 ml versus 18.9 ml, and 15.0 ml versus 6.8 ml, respectively. The median radiation dose per stage was 15.5 Gy in Era 1 and 17.0 Gy in Era 2, and the median clinical follow-up period in living patients was 8.6 years in Era 1 and 4.8 years in Era 2. All outcomes were measured from the first stage of VS-SRS. Near or complete obliteration was more common in Era 2 (log-rank test, p = 0.0003), with 3- and 5-year probabilities of 5% and 21%, respectively, in Era 1 compared with 24% and 68% in Era 2. Radiosurgical dose, AVM volume per stage, total AVM volume, era, compact nidus, Spetzler-Martin grade, and mRBAS were significantly associated with near or complete obliteration on univariate analysis. Dose was a strong predictor of response (Cox proportional hazards, p < 0.001, HR 6.99), with 3- and 5-year probabilities of near or complete obliteration of 5% and 16%, respectively, at a dose < 17 Gy versus 23% and 74% at a dose ≥ 17 Gy. Dose per stage, compact nidus, and total AVM volume remained significant predictors of near or complete obliteration on multivariate analysis. Seventeen patients (25%) had salvage surgery, SRS, and/or embolization. Allowing for salvage therapy, the probability of cure was more common in Era 2 (log-rank test, p = 0.0007) with 5-year probabilities of 0% in Era 1 versus 41% in Era 2. The strong trend toward improved cure in Era 2 persisted on multivariate analysis even when considering mRBAS (Cox proportional hazards, p = 0.055, HR 4.01, 95% CI 0.97-16.59). The complication rate was 29% in Era 1 compared with 13% in Era 2 (Cox proportional hazards, not significant). CONCLUSIONS VS-SRS is an option to obliterate or downsize large AVMs. Decreasing the AVM treatment volume per stage to ≤ 8 ml with this technique allowed a higher dose per fraction and decreased time to response, as well as improved rates of near obliteration and cure without increasing complications. Reducing the volume of these very large lesions can facilitate a surgical approach for cure.
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- 2016
39. Endovascular biopsy: Strategy for analyzing gene expression profiles of individual endothelial cells obtained from human vessels
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Sun, Zhengda, Lawson, Devon A, Sinclair, Elizabeth, Wang, Chih-Yang, Lai, Ming-Derg, Hetts, Steven W, Higashida, Randall T, Dowd, Christopher F, Halbach, Van V, Werb, Zena, Su, Hua, and Cooke, Daniel L
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Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Environmental Biotechnology ,Industrial Biotechnology ,Environmental Sciences ,Agricultural Biotechnology ,Biotechnology ,Genetics ,2.1 Biological and endogenous factors ,Cardiovascular ,Gene expression of artery endothelial cells ,Single cell quantitative RT-PCR ,Targeted endothelial cell sampling ,Agricultural biotechnology ,Industrial biotechnology ,Environmental biotechnology - Abstract
PurposeTo develop a strategy of achieving targeted collection of endothelial cells (ECs) by endovascular methods and analyzing the gene expression profiles of collected single ECs.Methods and results134 ECs and 37 leukocytes were collected from four patients' intra-iliac artery endovascular guide wires by fluorescence activated cell sorting (FACS) and analyzed by single-cell quantitative RT-PCR for expression profile of 48 genes. Compared to CD45+ leukocytes, the ECs expressed higher levels (p < 0.05) of EC surface markers used on FACS and other EC related genes. The gene expression profile showed that these isolated ECs fell into two clusters, A and B, that differentially expressed 19 genes related to angiogenesis, inflammation and extracellular matrix remodeling, with cluster B ECs have demonstrating similarities to senescent or aging ECs.ConclusionCombination of endovascular device sampling, FACS and single-cell quantitative RT-PCR is a feasible method for analyzing EC gene expression profile in vascular lesions.
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- 2015
40. Radiological and clinical features of vein of Galen malformations
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Chow, Maggie L, Cooke, Daniel L, Fullerton, Heather J, Amans, Matthew R, Narvid, Jared, Dowd, Christopher F, Higashida, Randall T, Halbach, Van V, and Hetts, Steven W
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Rare Diseases ,Pediatric ,Clinical Research ,Neurosciences ,Brain Disorders ,Cardiovascular ,Child ,Child ,Preschool ,Embolization ,Therapeutic ,Endovascular Procedures ,Female ,Humans ,Infant ,Infant ,Newborn ,Male ,Outcome Assessment ,Health Care ,Retrospective Studies ,Vein of Galen Malformations ,Pediatrics ,Angiography ,Arteriovenous Malformation ,Intervention ,Clinical sciences - Abstract
BackgroundVein of Galen malformations (VOGMs) are rare and complex congenital arteriovenous fistulas. The clinical and radiological features of VOGMs and their relation to clinical outcomes are not fully characterized.ObjectiveTo examine the clinical and radiological features of VOGMs and the predictors of outcome in patients.MethodsWe retrospectively reviewed the available imaging and medical records of all patients with VOGMs treated at the University of California, San Francisco between 1986 and 2013. Radiological and clinical features were identified. We applied the modified Rankin Scale to determine functional outcome by chart review. Predictors of outcome were assessed by χ(2) analyses.ResultsForty-one cases were confirmed as VOGM. Most patients (78%) had been diagnosed with VOGM in the first year of life. Age at treatment was bimodally distributed, with predominantly urgent embolization at
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- 2015
41. Oversampling Free Energy Perturbation Simulation in Determination of the Ligand-Binding Free Energy.
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Son Tung Ngo 0002, Trung Hai Nguyen, Nguyen Thanh Tung, Pham Cam Nam, Khanh B. Vu, and Van V. Vu
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- 2020
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42. Impact of the Astaxanthin, Betanin, and EGCG Compounds on Small Oligomers of Amyloid Aβ40 Peptide.
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Huynh Minh Hung, Minh Tho Nguyen, Phuong-Thao Tran, Vi Khanh Truong, James Chapman 0004, Le Huu Quynh Anh, Philippe Derreumaux, Van V. Vu, and Son Tung Ngo 0002
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- 2020
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43. Computational Determination of Potential Inhibitors of SARS-CoV-2 Main Protease.
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Son Tung Ngo 0002, Ngoc Quynh Anh Pham, Ly Thi Le, Duc-Hung Pham, and Van V. Vu
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- 2020
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44. Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity.
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Nguyen Thanh Nguyen, Trung Hai Nguyen, T. Ngoc Han Pham, Nguyen Truong Huy, Mai Van Bay, Minh Quan Pham, Pham Cam Nam, Van V. Vu, and Son Tung Ngo 0002
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- 2020
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45. Abstract 22: Time to Treatment and the Effect of Intravenous Thrombolysis Before Thrombectomy: An Individual Participant Data Meta-Analysis
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Kaesmacher, Johannes, primary, Cavalcante, Fabiano, additional, Kappelhof, Manon, additional, Treurniet, Kilian, additional, Rinkel, Leon A, additional, Liu, Jianmin, additional, Yan, Bernard, additional, Zi, Wenjie, additional, Kimura, Kazumi, additional, Eker, Omer, additional, Zhang, Yongwei, additional, Piechowiak, Eike, additional, van Zwam, Wim, additional, Liu, Sheng, additional, Strbian, Daniel, additional, Uyttenboogaart, Maarten, additional, Dobrocky, Tomas, additional, Zhongrong, Miao, additional, Suzuki, Kentaro, additional, Lei, Zhang, additional, Oostenbrugge, Robert Van V, additional, Meinel, Thomas, additional, Guo, Changwei, additional, Seiffge, David, additional, Ying, Congguo, additional, Bütikofer, Lukas, additional, Lingsma, Hester, additional, Mitchell, Peter J, additional, Yang, Pengfei, additional, Majoie, Charles B, additional, Roos, Yvo, additional, Fischer, Urs M, additional, and Gralla, Jan, additional
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- 2024
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46. Endothelial cell high-enrichment from endovascular biopsy sample by laser capture microdissection and fluorescence activated cell sorting.
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Sun, Zhengda, Su, Hua, Long, Brian, Sinclair, Elizabeth, Hetts, Steven W, Higashida, Randall T, Dowd, Christopher F, Halbach, Van V, and Cooke, Daniel L
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Iliac Artery ,Endothelial Cells ,Humans ,DNA ,Complementary ,RNA ,Radiography ,Biopsy ,Flow Cytometry ,Gene Expression ,Real-Time Polymerase Chain Reaction ,Laser Capture Microdissection ,Genetics ,Clinical Research ,Biotechnology ,Endothelial cell ,Laser capture microdissection ,Fluorescence activated cell sorting ,Biological Sciences ,Engineering ,Technology - Abstract
Background and purposeEndovascular sampling and characterization from patients can provide very useful information about the pathogenesis of different vascular diseases, but it has been limited by the lack of an effective method of endothelial cell (EC) enrichment. We optimized the EC yield and enrichment from conventional guide wires by laser capture microdissection (LCM) and fluorescence activated cell sorting (FACS) technique, and addressed the feasibility of using these enriched ECs for downstream gene expression detection.MethodsIliac artery endovascular samples from 10 patients undergoing routine catheter angiography were collected using conventional 0.038 in. J-shape guide wires. Each of these samples was equally divided into two parts, which were respectively used for EC enrichment by immunocytochemistry-coupled LCM or multiple color FACS. After RNA extraction and reverse transcription, the amplified cDNA was used for quantitative polymerase chain reaction (qPCR).ResultsFixed ECs, with positive CD31 or vWF fluorescent signal and endothelial like nucleus, were successfully separated by LCM and live single ECs were sorted on FACS by a seven color staining panel. EC yields by LCM and FACS were 51 ± 22 and 149 ± 56 respectively (P < 0.001). The minimum number of fixed ECs from ICC-coupled LCM for acceptable qPCR results of endothelial marker genes was 30, while acceptable qPCR results as enriched by FACS were attainable from a single live EC.ConclusionBoth LCM and FACS can be used to enrich ECs from conventional guide wires and the enriched ECs can be used for downstream gene expression detection. FACS generated a higher EC yield and the sorted live ECs may be used for single cell gene expression detection.
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- 2014
47. Cerebral arteriopathy associated with Arg179His ACTA2 mutation.
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Amans, Matthew R, Stout, Charles, Fox, Christine, Narvid, Jared, Hetts, Steven W, Cooke, Daniel L, Higashida, Randall T, Dowd, Christopher F, McSwain, Hugh, and Halbach, Van V
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Humans ,Brain Ischemia ,Infarction ,Middle Cerebral Artery ,Cerebral Arterial Diseases ,Actins ,Magnetic Resonance Imaging ,Amino Acid Substitution ,Mutation ,Child ,Preschool ,Female ,Stroke ,Neuroimaging ,Brain ,Congenital ,Genetic ,Pediatrics ,Vasculitis ,Neurosciences ,Brain Disorders ,Pediatric ,Aetiology ,2.1 Biological and endogenous factors ,Cardiovascular ,Angiography ,Digital Subtraction ,Cerebral Arteries ,Diagnosis ,Differential ,Magnetic Resonance Angiography ,Mydriasis ,Phenotype - Abstract
ACTA2 mutations have recently been shown to cause a multisystem smooth muscle dysfunction syndrome that may result in pediatric stroke. We report a case of ACTA2 mutation in a 3-year-old girl presenting with acute ischemic stroke and provide high resolution imaging of the cerebral arteries demonstrating novel findings of multiple tiny aneurysms (particularly in the posterior circulation), as well as the more characteristic imaging phenotype of straightened and narrowed proximal intracranial vessels, dilated cervical vessels and occlusion of the M1 MCA segment without lenticulostriate collateral formation. This newly identified disease should be added to the differential diagnosis of pediatric stroke and cerebral vasculopathy. Neuroradiologists, interventionalists, surgeons and neurologists should become familiar with this rare disease and its clinical sequelae.
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- 2014
48. A family of starch-active polysaccharide monooxygenases
- Author
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Vu, Van V, Beeson, William T, Span, Elise A, Farquhar, Erik R, and Marletta, Michael A
- Subjects
Biochemistry and Cell Biology ,Chemical Sciences ,Biological Sciences ,Copper ,Fungal Proteins ,Mixed Function Oxygenases ,Neurospora crassa ,Oxygen ,Protein Structure ,Tertiary ,Starch ,Substrate Specificity ,copper enzymes ,oxygen activation ,CBM20 - Abstract
The recently discovered fungal and bacterial polysaccharide monooxygenases (PMOs) are capable of oxidatively cleaving chitin, cellulose, and hemicelluloses that contain β(1→4) linkages between glucose or substituted glucose units. They are also known collectively as lytic PMOs, or LPMOs, and individually as AA9 (formerly GH61), AA10 (formerly CBM33), and AA11 enzymes. PMOs share several conserved features, including a monocopper center coordinated by a bidentate N-terminal histidine residue and another histidine ligand. A bioinformatic analysis using these conserved features suggested several potential new PMO families in the fungus Neurospora crassa that are likely to be active on novel substrates. Herein, we report on NCU08746 that contains a C-terminal starch-binding domain and an N-terminal domain of previously unknown function. Biochemical studies showed that NCU08746 requires copper, oxygen, and a source of electrons to oxidize the C1 position of glycosidic bonds in starch substrates, but not in cellulose or chitin. Starch contains α(1→4) and α(1→6) linkages and exhibits higher order structures compared with chitin and cellulose. Cellobiose dehydrogenase, the biological redox partner of cellulose-active PMOs, can serve as the electron donor for NCU08746. NCU08746 contains one copper atom per protein molecule, which is likely coordinated by two histidine ligands as shown by X-ray absorption spectroscopy and sequence analysis. Results indicate that NCU08746 and homologs are starch-active PMOs, supporting the existence of a PMO superfamily with a much broader range of substrates. Starch-active PMOs provide an expanded perspective on studies of starch metabolism and may have potential in the food and starch-based biofuel industries.
- Published
- 2014
49. Intra-arterial chemotherapy for bilateral retinoblastoma via left ophthalmic artery and right anterior deep temporal artery
- Author
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Amans, Matthew R, Narvid, Jared, and Halbach, Van V
- Subjects
Pediatric ,Eye Disease and Disorders of Vision ,Neurosciences ,Angiography ,Antineoplastic Agents ,Alkylating ,Catheterization ,Humans ,Infant ,Infusions ,Intra-Arterial ,Male ,Melphalan ,Ophthalmic Artery ,Retina ,Retinal Neoplasms ,Retinoblastoma ,Temporal Arteries ,Clinical Sciences - Abstract
A 12-month-old boy with a history of bilateral retinoblastoma refractory to systemic chemotherapy, laser therapy and cryotherapy, with excellent response to previous intra-arterial melphalan infusion, presents with active tumour deposits in the right eye. Repeat intra-arterial chemotherapy was recommended. Previous bilateral melphalan infusion was uneventful using flow-guided catheterisation technique. Direct catheterisation of the right ophthalmic artery was unsuccessful despite employment of several flow-guided and over-the-wire catheters. Superselective catheterisation of the ipsilateral middle meningeal artery was unable to identify an anastomotic connection to the ophthalmic artery; however, angiography of the anterior deep temporal artery identified an alternate route for chemotherapy infusion. The anterior deep temporal artery was successfully and safely catheterised to infuse chemotherapy into the ophthalmic artery. The anterior deep temporal artery is an important potential anastomotic connection to the ophthalmic artery that can be used safely and effectively for central retinal artery chemotherapy infusion for retinoblastoma treatment.
- Published
- 2014
50. Treatment and outcomes of ARUBA-eligible patients with unruptured brain arteriovenous malformations at a single institution.
- Author
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Rutledge, W Caleb, Abla, Adib A, Nelson, Jeffrey, Halbach, Van V, Kim, Helen, and Lawton, Michael T
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Stroke ,Clinical Trials and Supportive Activities ,Brain Disorders ,Clinical Research ,Neurosciences ,Adolescent ,Adult ,Aged ,Embolization ,Therapeutic ,Humans ,Intracranial Arteriovenous Malformations ,Kaplan-Meier Estimate ,Magnetic Resonance Angiography ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Postoperative Complications ,Radiosurgery ,Retrospective Studies ,Tomography Scanners ,X-Ray Computed ,Treatment Outcome ,Young Adult ,arteriovenous malformation ,ARUBA ,observation ,microsurgical resection ,ARUBA = A Randomized Trial of Unruptured Brain Arteriovenous Malformations ,AVM = arteriovenous malformation ,UCSF = University of California ,San Francisco ,mRS = modified Rankin Scale ,Neurology & Neurosurgery - Abstract
ObjectManagement of unruptured arteriovenous malformations (AVMs) is controversial. In the first randomized trial of unruptured AVMs (A Randomized Trial of Unruptured Brain Arteriovenous Malformations [ARUBA]), medically managed patients had a significantly lower risk of death or stroke and had better outcomes. The University of California, San Francisco (UCSF) was one of the participating ARUBA sites. While 473 patients were screened for eligibility, only 4 patients were enrolled in ARUBA. The purpose of this study is to report the treatment and outcomes of all ARUBA-eligible patients at UCSF.MethodsThe authors compared the treatment and outcomes of ARUBA-eligible patients using prospectively collected data from the UCSF brain AVM registry. Similar to ARUBA, they compared the rate of stroke or death in observed and treated patients and used the modified Rankin Scale to grade outcomes.ResultsOf 74 patients, 61 received an intervention and 13 were observed. Most treated patients had resection with or without preoperative embolization (43 [70.5%] of 61 patients). One of the 13 observed patients died after AVM hemorrhage. Nine of the 61 treated patients had a stroke or died. There was no significant difference in the rate of stroke or death (HR 1.34, 95% CI 0.12-14.53, p = 0.81) or clinical impairment (Fisher's exact test, p > 0.99) between observed and treated patients.ConclusionsThe risk of stroke or death and degree of clinical impairment among treated patients was lower than reported in ARUBA. The authors found no significant difference in outcomes between observed and treated ARUBA-eligible patients at UCSF. Results in ARUBA-eligible patients managed outside that trial led to an entirely different conclusion about AVM intervention, due to the primary role of surgery, judicious surgical selection with established outcome predictors, and technical expertise developed at high-volume AVM centers.
- Published
- 2014
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