734 results on '"Van Vlierberghe P"'
Search Results
2. Coaching doctors to improve ethical decision-making in adult hospitalized patients potentially receiving excessive treatment. The CODE stepped-wedge cluster randomized controlled trial
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Benoit, Dominique D., De Pauw, Aglaja, Jacobs, Celine, Moors, Ine, Offner, Fritz, Velghe, Anja, Van Den Noortgate, Nele, Depuydt, Pieter, Druwé, Patrick, Hemelsoet, Dimitri, Meurs, Alfred, Malotaux, Jiska, Van Biesen, Wim, Verbeke, Francis, Derom, Eric, Stevens, Dieter, De Pauw, Michel, Tromp, Fiona, Van Vlierberghe, Hans, Callebout, Eduard, Goethals, Katrijn, Lievrouw, An, Liu, Limin, Manesse, Frank, Vanheule, Stijn, and Piers, Ruth
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- 2024
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3. Porcine ex-vivo intestinal mucus has age-dependent blocking activity against transmissible gastroenteritis virus
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Saleem, Waqar, Carpentier, Nathan, Hinnekens, Charlotte, Oh, Dayoung, Van Vlierberghe, Sandra, Braeckmans, Kevin, and Nauwynck, Hans
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- 2024
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4. Middle childhood attachment is related to adolescent early maladaptive schemas
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Li, Kexin, Waters, Theodore E. A., Bodner, Nadja, Cuyvers, Bien, Finet, Chloë, Houbrechts, Melisse, Pouravari, Minoo, Van Vlierberghe, Leen, Vu, Ba Tuan, Yang, Rui, and Bosmans, Guy
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- 2024
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5. Porcine ex-vivo intestinal mucus has age-dependent blocking activity against transmissible gastroenteritis virus
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Waqar Saleem, Nathan Carpentier, Charlotte Hinnekens, Dayoung Oh, Sandra Van Vlierberghe, Kevin Braeckmans, and Hans Nauwynck
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TGEV ,intestinal mucus ,single particle tracking ,viral diffusion ,age-dependent infection ,infection block ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Transmissible gastroenteritis virus (TGEV) causes high mortality in young piglets (
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- 2024
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6. Photo-crosslinkable polyester microneedles as sustained drug release systems toward hypertrophic scar treatment
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Anna Szabó, Ignace De Decker, Sam Semey, Karel E.Y. Claes, Phillip Blondeel, Stan Monstrey, Jo Van Dorpe, and Sandra Van Vlierberghe
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Microneedles ,polyester ,cortisone ,hypertrophic scarring ,controlled drug release ,intradermal drug delivery ,Therapeutics. Pharmacology ,RM1-950 - Abstract
AbstractBurn injuries can result in a significant inflammatory response, often leading to hypertrophic scarring (HTS). Local drug therapies e.g. corticoid injections are advised to treat HTS, although they are invasive, operator-dependent, extremely painful and do not permit extended drug release. Polymer-based microneedle (MN) arrays can offer a viable alternative to standard care, while allowing for direct, painless dermal drug delivery with tailorable drug release profile. In the current study, we synthesized photo-crosslinkable, acrylate-endcapped urethane-based poly(ε-caprolactone) (AUP-PCL) toward the fabrication of MNs. Physico-chemical characterization (1H-NMR, evaluation of swelling, gel fraction) of the developed polymer was performed and confirmed successful acrylation of PCL-diol. Subsequently, AUP-PCL, and commercially available PCL-based microneedle arrays were fabricated for comparative evaluation of the constructs. Hydrocortisone was chosen as model drug. To enhance the drug release efficiency of the MNs, Brij®35, a nonionic surfactant was exploited. The thermal properties of the MNs were evaluated via differential scanning calorimetry. Compression testing of the arrays confirmed that the MNs stay intact upon applying a load of 7 N, which correlates to the standard dermal insertion force of MNs. The drug release profile of the arrays was evaluated, suggesting that the developed PCL arrays can offer efficient drug delivery for up to two days, while the AUP-PCL arrays can provide a release up to three weeks. Finally, the insertion of MN arrays into skin samples was performed, followed by histological analysis demonstrating the AUP-PCL MNs outperforming the PCL arrays upon providing pyramidical-shaped perforations through the epidermal layer of the skin.
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- 2024
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7. Publisher Correction: Coaching doctors to improve ethical decision-making in adult hospitalized patients potentially receiving excessive treatment. The CODE stepped-wedge cluster randomized controlled trial
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Benoit, Dominique D., De Pauw, Aglaja, Jacobs, Celine, Moors, Ine, Offner, Fritz, Velghe, Anja, Van Den Noortgate, Nele, Depuydt, Pieter, Druwé, Patrick, Hemelsoet, Dimitri, Meurs, Alfred, Malotaux, Jiska, Van Biesen, Wim, Verbeke, Francis, Derom, Eric, Stevens, Dieter, De Pauw, Michel, Tromp, Fiona, Van Vlierberghe, Hans, Callebout, Eduard, Goethals, Katrijn, Lievrouw, An, Liu, Limin, Manesse, Frank, Vanheule, Stijn, and Piers, Ruth
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- 2024
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8. Small molecular weight alginate gel porogen for the 3D bioprinting of microvasculature
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Florian Vanlauwe, Charlotte Dermaux, Sabina Shamieva, Stef Vermeiren, Sandra Van Vlierberghe, and Phillip Blondeel
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extrusion bioprinting ,3D microvascularization ,porogen ,angiogenesis ,vasculogenesis ,spheroid bioprinting ,Biotechnology ,TP248.13-248.65 - Abstract
In order to recreate the complexity of human organs, the field of tissue engineering and regenerative medicine has been focusing on methods to build organs from the bottom up by assembling distinct small functional units consisting of a biomaterial and cells. This bottom-up engineering requires bioinks that can be assembled by 3D bioprinting and that permit fast vascularization of the construct to ensure survival of embedded cells. To this end, a small molecular weight alginate (SMWA) gel porogen is presented herein. Alginate is a biocompatible biomaterial, which can be easily converted into small porogen gels with the procedure reported in this article. The SMWA porogen is mixed with photo-crosslinkable hydrogels and leached from the hydrogel post-crosslinking to increase porosity and facilitate vascularization. As a proof of concept, this system is tested with the commonly used biomaterial Gelatin Methacryloyl (GelMA). The SMWA porogen-GelMA blend is proven to be bioprintable. Incubating the blend for 20 min in a low concentration phosphate buffered saline and sodium citrate solution significantly reduces the remaining porogen in the hydrogel . The intent to completely leach the porogen from the hydrogel was abandoned, as longer incubation times and higher concentrations of phosphate and citrate were detrimental to endothelial proliferation. Nonetheless, even with remnants of the porogen left in the hydrogel, the created porosity significantly improves viability, growth factor signaling, vasculogenesis, and angiogenesis in 3D bioprinted structures. This article concludes that the usage of the SMWA porogen can improve the assembly of microvasculature in 3D bioprinted structures. This technology can benefit the bottom-up assembly of large scaffolds with high cell density through 3D bioprinting by improving cell viability and allowing faster vascularization.
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- 2024
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9. BCAT1 is a NOTCH1 target and sustains the oncogenic function of NOTCH1
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Valeria Tosello, Ludovica Di Martino, Adonia E. Papathanassiu, Silvia Dalla Santa, Marco Pizzi, Lara Mussolin, Jingjing Liu, Pieter van Vlierberghe, and Erich Piovan
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
High levels of branched-chain amino acid (BCAA) transaminase 1 (BCAT1) have been associated with tumor aggressiveness and drug resistance in several cancer types. Nevertheless, the mechanistic role of BCAT1 in T-cell acute lymphoblastic leukemia (T-ALL) remains uncertain. We provide evidence that Bcat1 was over-expressed following NOTCH1-induced transformation of leukemic progenitors and that NOTCH1 directly controlled BCAT1 expression by binding to a BCAT1 promoter. Further, using a NOTCH1 gain-of-function retroviral model of T-ALL, mouse cells genetically deficient for Bcat1 showed defects in developing leukemia. In murine T-ALL cells, Bcat1 depletion or inhibition redirected leucine metabolism towards production of 3-hydroxy butyrate (3-HB), an endogenous histone deacetylase inhibitor. Consistently, BCAT1 depleted cells showed altered protein acetylation levels which correlated with a pronounced sensitivity to DNA damaging agents. In human NOTCH1-dependent leukemias, high expression levels of BCAT1 may predispose to worse prognosis. Therapeutically, BCAT1 inhibition specifically synergized with etoposide to eliminate tumors in patient-derived xenograft models suggesting that BCAT1 inhibitors may have a part to play in salvage protocols for refractory T-ALL.
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- 2024
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10. External validation of the IAIHG autoimmune hepatitis response criteria in a multicentric real-world cohort
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Lorenz Grossar, Sarah Raevens, Christophe Van Steenkiste, Isabelle Colle, Charlotte De Vloo, Hans Orlent, Jeoffrey Schouten, Marie Gallant, Annelien Van Driessche, Sander Lefere, Lindsey Devisscher, Anja Geerts, Hans Van Vlierberghe, and Xavier Verhelst
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autoimmune hepatitis ,surrogate endpoints ,primary endpoints –validation ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: The goal of treatment in autoimmune hepatitis (AIH) is induction of remission to prevent the development of liver fibrosis, cirrhosis, and its related complications. Various definitions of treatment response and remission have been used. The International Autoimmune Hepatitis Group (IAIHG) recently defined consensus criteria for treatment response. We aimed to validate the IAIHG response criteria in our cohort and establish correlations with survival endpoints. Methods: We performed a retrospective, multicentric cohort study in one tertiary and seven secondary care centres in Belgium. Eligible patients were at least 18 years of age at data collection and were diagnosed with AIH by a simplified IAIHG score of ≥6. Complete biochemical response (CBR) was defined according to the IAIHG consensus criteria as normalisation of transaminases and serum IgG within the first 6 months of treatment. The primary endpoint was liver-related survival – defined as freedom from liver-related death or liver transplantation. Secondary endpoints were overall mortality and transplant-free survival. Outcomes were compared between patients attaining CBR and those with insufficient response. Results: Biochemical response status could be determined in 200 patients with AIH: CBR was achieved in 128 (64.0%) individuals. Patients not achieving CBR more frequently presented with cirrhosis on initial histology (22.2% vs. 10.9%, p = 0.036). Liver-related mortality or liver transplantation as a primary outcome occurred in 26 patients (13.0%). Patients achieving CBR exhibited superior liver-related (hazard ratio 0.118; 95% CI 0.052-0.267; p
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- 2024
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11. Electrospun Polyurethane Vascular Grafts for Cerebral Revascularization: A Pilot Study on Rats
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Evelynn Vergauwen, Michiel R. L. Tubeeckx, Annemie Houben, Sandra Van Vlierberghe, Marc Demolder, Guido R. Y. De Meyer, Patrick Pauwels, and Tomas Menovsky
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cerebral bypass ,cerebral revascularization ,electrospun polyurethane ,vascular graft ,vascular neurosurgery ,Therapeutics. Pharmacology ,RM1-950 ,Biochemistry ,QD415-436 - Abstract
The current standard technique for vascular grafting in cerebral revascularization surgery employs the interposition of an autologous blood vessel. Technical complications have necessitated the development of a synthetic alternative, but classical biomaterials are not suited for small caliber vascular grafting due to the resulting neointimal hyperplasia and thrombosis. The electrospinning of polymers is a promising technique for the development of small vascular grafts. The in vivo performance and efficacy of electrospun polyurethane (ePU) grafts with an internal diameter of
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- 2024
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12. Mutations in the histone methyltransferase Ezh2 drive context-dependent leukemia in Xenopus tropicalis
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Tulkens, Dieter, Boelens, Marthe, Naert, Thomas, Carron, Marjolein, Demuynck, Suzan, Dewaele, Sylviane, Van Isterdael, Gert, Creytens, David, Pieters, Tim, Goossens, Steven, Van Vlierberghe, Pieter, and Vleminckx, Kris
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- 2023
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13. Development of photo-crosslinked poly(aspartic acid) fiber networks via electrospinning
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Lauren De Grave, Katrien V. Bernaerts, and Sandra Van Vlierberghe
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Polysuccinimide ,Poly(aspartic acid) ,Electrospinning ,Photo-crosslinking ,Fiber networks ,Technology - Abstract
Poly(aspartic acid) (pAsp)-based fiber networks were developed via electrospinning and photo-crosslinking. Fiber networks hold the advantage that they exhibit a high surface-to-volume ratio, giving rise to a high water uptake and retention capacity, along with the ability to release moisture under desired circumstances (e.g. reduced relative humidity, mechanical pressure, etc.). Herein, polysuccinimide (PSI), the precursor of pAsp, was modified with 5-norbornene-2-methylamine to obtain crosslinkable norbornene-modified PSI (PSI-NB) with two different degrees of substitution, i.e. 19% and 46%. These derivatives were electrospun into thin uniform fibers after optimization of the processing parameters. The fiber sheets were crosslinked via a thiol-ene step-growth mechanism with three different thiol crosslinkers exploiting UV-A irradiation in the presence of TPO-L as photo-initiator. Using this strategy, fiber networks with diameters ranging between 1.27 ± 0.29 and 2.20 ± 1.05 µm were obtained, as visualized with scanning electron microscopy (SEM). Successful crosslinking was evidenced by a dissolution test in dimethylformamide and through X-ray photoelectron spectroscopy. Finally, the PSI-NB fiber networks were hydrolyzed to obtain pAsp-NB fiber networks by alkaline hydrolysis in a carbonate buffer solution, as confirmed by Fourier-transform infrared spectroscopy. The morphology of the fibers following hydrolysis was visualized by SEM and the average fiber diameters were calculated and compared to the diameters before hydrolysis, generally showing a diameter increase due to swelling of the fibers in aqueous solution. In conclusion, pAsp-based fiber networks were successfully developed and stabilized via photo-crosslinking.
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- 2024
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14. In vitro and in vivo evaluation of periosteum-derived cells and iPSC-derived chondrocytes encapsulated in GelMA for osteochondral tissue engineering
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Hannah Agten, Inge Van Hoven, Jasper Van Hoorick, Sandra Van Vlierberghe, Frank P. Luyten, and Veerle Bloemen
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tissue engineering ,cartilage ,osteochondral ,induced pluripotent stem cell-derived chondrocyte ,serum-free ,Biotechnology ,TP248.13-248.65 - Abstract
Osteochondral defects are deep joint surface lesions that affect the articular cartilage and the underlying subchondral bone. In the current study, a tissue engineering approach encompassing individual cells encapsulated in a biocompatible hydrogel is explored in vitro and in vivo. Cell-laden hydrogels containing either human periosteum-derived progenitor cells (PDCs) or human induced pluripotent stem cell (iPSC)-derived chondrocytes encapsulated in gelatin methacryloyl (GelMA) were evaluated for their potential to regenerate the subchondral mineralized bone and the articular cartilage on the joint surface, respectively. PDCs are easily isolated and expanded progenitor cells that are capable of generating mineralized cartilage and bone tissue in vivo via endochondral ossification. iPSC-derived chondrocytes are an unlimited source of stable and highly metabolically active chondrocytes. Cell-laden hydrogel constructs were cultured for up to 28 days in a serum-free chemically defined chondrogenic medium. On day 1 and day 21 of the differentiation period, the cell-laden constructs were implanted subcutaneously in nude mice to evaluate ectopic tissue formation 4 weeks post-implantation. Taken together, the data suggest that iPSC-derived chondrocytes encapsulated in GelMA can generate hyaline cartilage-like tissue constructs with different levels of maturity, while using periosteum-derived cells in the same construct type generates mineralized tissue and cortical bone in vivo. Therefore, the aforementioned cell-laden hydrogels can be an important part of a multi-component strategy for the manufacturing of an osteochondral implant.
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- 2024
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15. A preclinical platform for assessing long-term drug efficacy exploiting mechanically tunable scaffolds colonized by a three-dimensional tumor microenvironment
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Elly De Vlieghere, Koen Van de Vijver, Eva Blondeel, Nathan Carpentier, Rouba Ghobeira, Jarne Pauwels, Sebastian Riemann, Manon Minsart, Charlotte Fieuws, Johanna Mestach, Ans Baeyens, Nathalie De Geyter, Charlotte Debbaut, Hannelore Denys, Benedicte Descamps, Kathleen Claes, Anne Vral, Jo Van Dorpe, Kris Gevaert, Bruno G. De Geest, Wim Ceelen, Sandra Van Vlierberghe, and Olivier De Wever
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3D cancer model ,Long-term ,Drug evaluation ,Pre-clinical ,Micro-environment ,Stiffness ,Medical technology ,R855-855.5 - Abstract
Abstract Background Long-term drug evaluation heavily relies upon rodent models. Drug discovery methods to reduce animal models in oncology may include three-dimensional (3D) cellular systems that take into account tumor microenvironment (TME) cell types and biomechanical properties. Methods In this study we reconstructed a 3D tumor using an elastic polymer (acrylate-endcapped urethane-based poly(ethylene glycol) (AUPPEG)) with clinical relevant stiffness. Single cell suspensions from low-grade serous ovarian cancer (LGSOC) patient-derived early passage cultures of cancer cells and cancer-associated fibroblasts (CAF) embedded in a collagen gel were introduced to the AUPPEG scaffold. After self-organization in to a 3D tumor, this model was evaluated by a long-term (> 40 days) exposure to a drug combination of MEK and HSP90 inhibitors. The drug-response results from this long-term in vitro model are compared with drug responses in an orthotopic LGSOC xenograft mouse model. Results The in vitro 3D scaffold LGSOC model mimics the growth ratio and spatial organization of the LGSOC. The AUPPEG scaffold approach allows to test new targeted treatments and monitor long-term drug responses. The results correlate with those of the orthotopic LGSOC xenograft mouse model. Conclusions The mechanically-tunable scaffolds colonized by a three-dimensional LGSOC allow long-term drug evaluation and can be considered as a valid alternative to reduce, replace and refine animal models in drug discovery. Graphical Abstract
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- 2023
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16. Myb overexpression synergizes with the loss of Pten and is a dependency factor and therapeutic target in T‐cell lymphoblastic leukemia
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André Almeida, Sara T'Sas, Luca Pagliaro, Igor Fijalkowski, Wouter Sleeckx, Hannah Van Steenberge, Raffaella Zamponi, Béatrice Lintermans, Wouter Van Loocke, Bruno Palhais, Alexandra Reekmans, Valentina Bardelli, Lisa Demoen, Lindy Reunes, Dieter Deforce, Filip Van Nieuwerburgh, Alex Kentsis, Panagiotis Ntziachristos, Nadine Van Roy, Barbara De Moerloose, Cristina Mecucci, Roberta La Starza, Giovanni Roti, Steven Goossens, Pieter Van Vlierberghe, and Tim Pieters
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract T‐lineage acute lymphoblastic leukemia (T‐ALL) is an aggressive hematological malignancy that accounts for 10%–15% of pediatric and 25% of adult ALL cases. Although the prognosis of T‐ALL has improved over time, the outcome of T‐ALL patients with primary resistant or relapsed leukemia remains poor. Therefore, further progress in the treatment of T‐ALL requires a better understanding of its biology and the development of more effective precision oncologic therapies. The proto‐oncogene MYB is highly expressed in diverse hematologic malignancies, including T‐ALLs with genomic aberrations that further potentiate its expression and activity. Previous studies have associated MYB with a malignant role in the pathogenesis of several cancers. However, its role in the induction and maintenance of T‐ALL remains relatively poorly understood. In this study, we found that an increased copy number of MYB is associated with higher MYB expression levels, and might be associated with inferior event‐free survival of pediatric T‐ALL patients. Using our previously described conditional Myb overexpression mice, we generated two distinct MYB‐driven T‐ALL mouse models. We demonstrated that the overexpression of Myb synergizes with Pten deletion but not with the overexpression of Lmo2 to accelerate the development of T‐cell lymphoblastic leukemias. We also showed that MYB is a dependency factor in T‐ALL since RNA interference of Myb blocked cell cycle progression and induced apoptosis in both human and murine T‐ALL cell lines. Finally, we provide preclinical evidence that targeting the transcriptional activity of MYB can be a useful therapeutic strategy for the treatment of T‐ALL.
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- 2024
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17. Location matters: spatial dynamics of tumor-infiltrating T cell subsets is prognostic in colon cancer
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Hehuan Zhu, Jessica Roelands, Eiman I. Ahmed, Imke Stouten, Rachel Hoorntje, Ronald L. P. van Vlierberghe, Marieke E. Ijsselsteijn, Xin Lei, Noel F. C. C. de Miranda, Rob A. E. M. Tollenaar, Alexander L. Vahrmeijer, Davide Bedognetti, Wouter R. L. Hendrickx, and Peter J. K. Kuppen
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colon cancer ,multiplex immunofluorescence ,T cell ,spatial analysis ,tumor microenvironment ,immunologic constant of rejection ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundColon cancer is a heterogeneous disease and consists of various molecular subtypes. Despite advances in high-throughput expression profiling, limitations remain in predicting clinical outcome and assigning specific treatment to individual cases. Tumor-immune interactions play a critical role, with tumors that activate the immune system having better outcome for the patient. The localization of T cells within tumor epithelium, to enable direct contact, is essential for antitumor function, but bulk DNA/RNA sequencing data lacks spatial distribution information. In this study, we provide spatial T cell tumor distribution and connect these data with previously determined genomic data in the AC-ICAM colon cancer patient cohort.MethodsColon cancer patients (n=90) with transcriptome data available were selected. We used a custom multiplex immunofluorescence assay on colon tumor tissue sections for quantifying T cell subsets spatial distribution in the tumor microenvironment, in terms of cell number, location, mutual distance, and distance to tumor cells. Statistical analyses included the previously determined Immunologic Constant of Rejection (ICR) transcriptome correlation and patient survival, revealing potential prognostic value in T cell spatial distribution.ResultsT cell phenotypes were characterized and CD3+CD8-FoxP3- T cells were found to be the predominant tumor-infiltrating subtype while CD3+FoxP3+ T cells and CD3+CD8+ T cells showed similar densities. Spatial distribution analysis elucidated that proliferative T cells, characterized by Ki67 expression, and Granzyme B-expressing T cells were predominantly located within the tumor epithelium. We demonstrated an increase in immune cell density and a decrease in the distance of CD3+CD8+ T cells to the nearest tumor cell, in the immune active, ICR High, immune subtypes. Higher densities of stromal CD3+FoxP3+ T cells showed enhanced survival outcomes, and patients exhibited superior clinical benefits when greater spatial distances were observed between CD3+CD8-FoxP3- or CD3+CD8+ T cells and CD3+FoxP3+ T cells.ConclusionOur study’s in-depth analysis of the spatial distribution and densities of major T cell subtypes within the tumor microenvironment has provided valuable information that paves the way for further research into the intricate relationships between immune cells and colon cancer development.
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- 2024
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18. A helicase-independent role of DHX15 promotes MYC stability and acute leukemia cell survival
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Qilong Li, Hao Guo, Jin Xu, Xinlu Li, Donghai Wang, Ying Guo, Guoliang Qing, Pieter Van Vlierberghe, and Hudan Liu
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Biochemistry ,Molecular biology ,Molecular mechanism of gene regulation ,Cancer ,Science - Abstract
Summary: DHX15 has been implicated in RNA splicing and ribosome biogenesis, primarily functioning as an RNA helicase. To systematically assess the cellular role of DHX15, we conducted proteomic analysis to investigate the landscape of DHX15 interactome, and identified MYC as a binding partner. DHX15 co-localizes with MYC in cells and directly interacts with MYC in vitro. Importantly, DHX15 contributes to MYC protein stability at the post-translational level and independent of its RNA binding capacity. Mechanistic investigation reveals that DHX15 interferes the interaction between MYC and FBXW7, thereby preventing MYC polyubiquitylation and proteasomal degradation. Consequently, the abrogation of DHX15 drastically inhibits MYC-mediated transcriptional output. While DHX15 depletion blocks T cell development and leukemia cell survival as we recently reported, overexpression of MYC significantly rescues the phenotypic defects. These findings shed light on the essential role of DHX15 in mammalian cells and suggest that maintaining sufficient MYC expression is a significant contributor to DHX15-mediated cellular functions.
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- 2024
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19. Light extraction from CVD-grown <400> single crystal diamond nanopillars. Selective charge state manipulations with 0V SF6 plasma
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Radtke, Mariusz, Slablab, Abdallah, Van Vlierberghe, Sandra, Lin, Chao-Nan, Lu, Ying-Jie, and Shan, Chong-Xin
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Physics - Applied Physics ,Quantum Physics - Abstract
We investigate the possibilities to realize light extraction from single crystal diamond (SCD) nanopillars. This was achieved by dedicated 519 nm laser-induced spin-state initiation of negatively charged nitrogen vacancies (NV-). For the first time, we present possibility to perform effective spin-readout of NV(-)s that were naturally generated by the growth process during chemical vapor deposition (CVD) synthesis within SCD without any post-growth implantation strategies. Applied diamond was neither implanted with 14N+, nor was the CVD synthesized SCD annealed, making the presence of nitrogen vacancy a remarkable phenomenon. To investigate the possibility to realize light extraction by the utilization of NV(-) bright photoluminescence at room temperature and ambient conditions with the waveguiding effect, we have performed a top-down nanofabrication of SCD by electron beam lithography (EBL) and dry inductively-coupled plasma/ reactive ion etching (ICP-RIE) to generate light focusing nanopillars. In addition, we have fluorinated the diamond's surface by dedicated 0V ICP plasma. Light extraction and spin manipulations were performed with photoluminescence (PL) spectroscopy and optically detected magnetic resonance (ODMR) at room temperature. We have observed a remarkable effect based on the selective 0V SF6 plasma etching and surprisingly, in contrast to literature findings, deactivation of NV(-) centers. We discuss the possible deactivation mechanism in detail regarding 2-dimensional hole gas (2HG) and Fermi band bending.
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- 2020
20. A preclinical platform for assessing long-term drug efficacy exploiting mechanically tunable scaffolds colonized by a three-dimensional tumor microenvironment
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De Vlieghere, Elly, Van de Vijver, Koen, Blondeel, Eva, Carpentier, Nathan, Ghobeira, Rouba, Pauwels, Jarne, Riemann, Sebastian, Minsart, Manon, Fieuws, Charlotte, Mestach, Johanna, Baeyens, Ans, De Geyter, Nathalie, Debbaut, Charlotte, Denys, Hannelore, Descamps, Benedicte, Claes, Kathleen, Vral, Anne, Van Dorpe, Jo, Gevaert, Kris, De Geest, Bruno G., Ceelen, Wim, Van Vlierberghe, Sandra, and De Wever, Olivier
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- 2023
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21. CircFBXW7 in patients with T-cell ALL: depletion sustains MYC and NOTCH activation and leukemia cell viability
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Buratin, Alessia, Borin, Cristina, Tretti Parenzan, Caterina, Dal Molin, Anna, Orsi, Silvia, Binatti, Andrea, Simon, Katharina, Paganin, Maddalena, Serafin, Valentina, Gaffo, Enrico, te Kronnie, Geertruij, Van Vlierberghe, Pieter, Bresolin, Silvia, and Bortoluzzi, Stefania
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- 2023
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22. SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry
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Decaesteker, Bieke, Louwagie, Amber, Loontiens, Siebe, De Vloed, Fanny, Bekaert, Sarah-Lee, Roels, Juliette, Vanhauwaert, Suzanne, De Brouwer, Sara, Sanders, Ellen, Berezovskaya, Alla, Denecker, Geertrui, D’haene, Eva, Van Haver, Stéphane, Van Loocke, Wouter, Van Dorpe, Jo, Creytens, David, Van Roy, Nadine, Pieters, Tim, Van Neste, Christophe, Fischer, Matthias, Van Vlierberghe, Pieter, Roberts, Stephen S., Schulte, Johannes, Ek, Sara, Versteeg, Rogier, Koster, Jan, van Nes, Johan, Zimmerman, Mark, De Preter, Katleen, and Speleman, Frank
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- 2023
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23. ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
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Palomero Teresa, Van Vlierberghe Pieter, Khiabanian Hossein, Ferrando Adolfo A, and Rabadan Raul
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Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Background Next-generation sequencing produces high-throughput data, albeit with greater error and shorter reads than traditional Sanger sequencing methods. This complicates the detection of genomic variations, especially, small insertions and deletions. Findings Here we describe ParMap, a statistical algorithm for the identification of complex genetic variants, such as small insertion and deletions, using partially mapped reads in nextgen sequencing data. Conclusions We report ParMap's successful application to the mutation analysis of chromosome X exome-captured leukemia DNA samples.
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- 2010
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24. Intrathymic dendritic cell-biased precursors promote human T cell lineage specification through IRF8-driven transmembrane TNF
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Liang, Kai Ling, Roels, Juliette, Lavaert, Marieke, Putteman, Tom, Boehme, Lena, Tilleman, Laurentijn, Velghe, Imke, Pegoretti, Valentina, Van de Walle, Inge, Sontag, Stephanie, Vandewalle, Jolien, Vandekerckhove, Bart, Leclercq, Georges, Van Vlierberghe, Pieter, Libert, Claude, Van Nieuwerburgh, Filip, Fischer, Roman, Kontermann, Roland E., Pfizenmaier, Klaus, Doody, Gina, Zenke, Martin, and Taghon, Tom
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- 2023
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25. Increasing hydrogel complexity from 2D towards 3D towards intestinal tissue engineering
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Anna Szabó, Elly De Vlieghere, Pedro F. Costa, Indi Geurs, Koen Dewettinck, and Sandra Van Vlierberghe
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Intestinal tissue engineering ,Gelatin hydrogels ,Digital light processing ,Cell culture inserts ,Physiological scaffold architecture ,Science (General) ,Q1-390 - Abstract
There is a high demand for in vitro intestinal models towards studying intestinal disfunctions, such as gastrointestinal diseases (Crohn's disease, irritable bowel syndrome, colorectal cancer, etc.) which are commonly diagnosed in modern society. In parallel, in vitro models are utilized for the evaluation of novel food supplements and pharmaceuticals in the intestinal micro-environment. Gelatin-based hydrogels can offer appropriate mechanical cues (down to G’ < 10 kPa) and cell interactivity to obtain physiologically relevant soft tissue models. Therefore, the current paper focused on the development of a novel, gelatin-methacryloyl-aminoethyl-methacrylate (gel-MA-AEMA)-based in vitro intestinal model, which also provides sufficient permeability towards nutrients and drugs. Moreover, the effect of the hydrogel morphology on the cell response was assessed by comparing the formation of a functional intestinal cell monolayer on flat hydrogel films versus 3D hydrogel scaffolds maintaining a close morphological resemblance with the intestinal architecture.A gel-MA-AEMA-based biomaterial ink was formulated and processed towards flat hydrogel films, while digital light processing was exploited to replicate the intestinal microarchitecture. The mechanical assessment of the 2D films confirmed physiologically relevant scaffold stiffness (G’ = 3.30±1.07 kPa). To evaluate the permeability of the hydrogels towards a medium size marker molecule (FITC-dextran 4 kg·mol−1), a static diffusion setup was exploited with custom-made adjustable inserts, which evidenced that both the 2D films and 3D constructs exhibited sufficient permeability. Finally, the combination of the hydrogels with a Caco-2/HT29-MTX co-culture evidenced hydrogel biocompatibility, enabling the formation of a functional cell monolayer after 21 days on the 2D hydrogel films, proven by transepithelial electrical resistance measurements and immunohistochemistry, while the 3D hydrogel constructs did not achieve confluency within 35 days.
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- 2023
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26. Targeting hyperactive platelet-derived growth factor receptor-β signaling in T-cell acute lymphoblastic leukemia and lymphoma
- Author
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Stien De Coninck, Renate De Smedt, Beatrice Lintermans, Lindy Reunes, Hansen J. Kosasih, Alexandra Reekmans, Lauren M. Brown, Nadine Van Roy, Bruno Palhais, Juliette Roels, Malaika Van der Linden, Jo Van Dorpe, Panagiotis Ntziachristos, Frederik W. van Delft, Marc R. Mansour, Tim Pieters, Tim Lammens, Barbara De Moerloose, Charles E. de Bock, Steven Goossens, and Pieter Van Vlierberghe
- Subjects
Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
T-cell acute lymphoblastic leukemia (T-ALL) and T-cell lymphoblastic lymphoma (T-LBL) are rare aggressive hematologic malignancies. Current treatment consists of intensive chemotherapy leading to 80% overall survival but is associated with severe toxic side effects. Furthermore, 10-20% of patients still die from relapsed or refractory disease providing a strong rationale for more specific, targeted therapeutic strategies with less toxicities. Here, we report a novel MYH9::PDGFRB fusion in a T-LBL patient, and demonstrate that this fusion product is constitutively active and sufficient to drive oncogenic transformation in vitro and in vivo. Expanding our analysis more broadly across T-ALL, we found a T-ALL cell line and multiple patient-derived xenograft models with PDGFRB hyperactivation in the absence of a fusion, with high PDGFRB expression in TLX3 and HOXA T-ALL molecular subtypes. To target this PDGFRB hyperactivation, we evaluated the therapeutic effects of a selective PDGFRB inhibitor, CP-673451, both in vitro and in vivo and demonstrated sensitivity if the receptor is hyperactivated. Altogether, our work reveals that hyperactivation of PDGFRB is an oncogenic driver in T-ALL/T-LBL, and that screening T-ALL/T-LBL patients for phosphorylated PDGFRB levels can serve as a biomarker for PDGFRB inhibition as a novel targeted therapeutic strategy in their treatment regimen.
- Published
- 2023
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27. Polymeric reinforcements for cellularized collagen-based vascular wall models: influence of the scaffold architecture on the mechanical and biological properties
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Nele Pien, Dalila Di Francesco, Francesco Copes, Michael Bartolf-Kopp, Victor Chausse, Marguerite Meeremans, Marta Pegueroles, Tomasz Jüngst, Catharina De Schauwer, Francesca Boccafoschi, Peter Dubruel, Sandra Van Vlierberghe, and Diego Mantovani
- Subjects
vascular wall model ,cellularized collagen ,polymeric reinforcement ,solution electrospinning ,melt electrowriting ,3D printing ,Biotechnology ,TP248.13-248.65 - Abstract
A previously developed cellularized collagen-based vascular wall model showed promising results in mimicking the biological properties of a native vessel but lacked appropriate mechanical properties. In this work, we aim to improve this collagen-based model by reinforcing it using a tubular polymeric (reinforcement) scaffold. The polymeric reinforcements were fabricated exploiting commercial poly (ε-caprolactone) (PCL), a polymer already used to fabricate other FDA-approved and commercially available devices serving medical applications, through 1) solution electrospinning (SES), 2) 3D printing (3DP) and 3) melt electrowriting (MEW). The non-reinforced cellularized collagen-based model was used as a reference (COL). The effect of the scaffold’s architecture on the resulting mechanical and biological properties of the reinforced collagen-based model were evaluated. SEM imaging showed the differences in scaffolds’ architecture (fiber alignment, fiber diameter and pore size) at both the micro- and the macrolevel. The polymeric scaffold led to significantly improved mechanical properties for the reinforced collagen-based model (initial elastic moduli of 382.05 ± 132.01 kPa, 100.59 ± 31.15 kPa and 245.78 ± 33.54 kPa, respectively for SES, 3DP and MEW at day 7 of maturation) compared to the non-reinforced collagen-based model (16.63 ± 5.69 kPa). Moreover, on day 7, the developed collagen gels showed stresses (for strains between 20% and 55%) in the range of [5–15] kPa for COL, [80–350] kPa for SES, [20–70] kPa for 3DP and [100–190] kPa for MEW. In addition to the effect on the resulting mechanical properties, the polymeric tubes’ architecture influenced cell behavior, in terms of proliferation and attachment, along with collagen gel compaction and extracellular matrix protein expression. The MEW reinforcement resulted in a collagen gel compaction similar to the COL reference, whereas 3DP and SES led to thinner and longer collagen gels. Overall, it can be concluded that 1) the selected processing technique influences the scaffolds’ architecture, which in turn influences the resulting mechanical and biological properties, and 2) the incorporation of a polymeric reinforcement leads to mechanical properties closely matching those of native arteries.
- Published
- 2023
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28. SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry
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Bieke Decaesteker, Amber Louwagie, Siebe Loontiens, Fanny De Vloed, Sarah-Lee Bekaert, Juliette Roels, Suzanne Vanhauwaert, Sara De Brouwer, Ellen Sanders, Alla Berezovskaya, Geertrui Denecker, Eva D’haene, Stéphane Van Haver, Wouter Van Loocke, Jo Van Dorpe, David Creytens, Nadine Van Roy, Tim Pieters, Christophe Van Neste, Matthias Fischer, Pieter Van Vlierberghe, Stephen S. Roberts, Johannes Schulte, Sara Ek, Rogier Versteeg, Jan Koster, Johan van Nes, Mark Zimmerman, Katleen De Preter, and Frank Speleman
- Subjects
Science - Abstract
The development of neuroblastoma (NB) is regulated by multiple core transcription factors. Here, SOX11 is identified as a potential epigenetic master regulator upstream of the core regulatory circuitry in adrenergic high-risk neuroblastoma.
- Published
- 2023
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29. Systematic comparison of experimental and human obstructive cholestasis reveals conservation of canonical pathway activation and biomarkers relevant for cholestatic liver disease
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Eva Gijbels, Kevin De Muynck, Bart Vanderborght, Tim Meese, Filip Van Nieuwerburgh, Aude Vanlander, Frederik Berrevoet, Bart Hendrikx, Anne Hoorens, Hans Van Vlierberghe, Mathieu Vinken, and Lindsey Devisscher
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Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Published
- 2023
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30. CircFBXW7 in patients with T-cell ALL: depletion sustains MYC and NOTCH activation and leukemia cell viability
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Alessia Buratin, Cristina Borin, Caterina Tretti Parenzan, Anna Dal Molin, Silvia Orsi, Andrea Binatti, Katharina Simon, Maddalena Paganin, Valentina Serafin, Enrico Gaffo, Geertruij te Kronnie, Pieter Van Vlierberghe, Silvia Bresolin, and Stefania Bortoluzzi
- Subjects
CircFBXW7 ,T-cell Acute Lymphoblastic Leukemia ,Circular RNA ,Gene expression ,Loss-of-function study ,Diseases of the blood and blood-forming organs ,RC633-647.5 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Circular RNAs (circRNAs) are emerging as new players in leukemogenic mechanisms. In patients with T-cell Acute Lymphoblastic Leukemia (T-ALL), the recent report of a remarkable dysregulation of circRNAs incited further functional investigation. Here we focus on circFBXW7, highly expressed in T-cells, with a notably high abundance of the circular compared to linear transcript of FBXW7. Two T-ALL patient cohorts profiled with RNA-seq were analyzed in comparison with five populations of developing thymocytes as normal counterpart, quantifying circRNA and gene expression. CircFBXW7 expression was very heterogeneous in T-ALL patients allowing their stratification in two groups with low and high expression of this circRNA, not correlated with FBXW7 mutation status and T-ALL molecular subgroups. With a loss-of-function study in T-ALL in vitro, we demonstrate that circFBXW7 depletion increases leukemic cell viability and proliferation. Microarray profiling highlighted the effect of the circFBXW7 silencing on gene expression, with activation of pro-proliferative pathways, supporting a tumor suppressor role of circFBXW7 in T-ALL. Further, MYC and intracellular NOTCH1 protein levels, as well as expression of MYC target and NOTCH signaling genes were elevated after circFBXW7 depletion, suggesting an inhibitory role of circFBXW7 in these oncogenic axes. Plus, low circFBXW7 levels were associated with a particular gene expression profile in T-ALL patients, which was remarkably mirrored by the effects of circFBXW7 loss-of-function in vitro. CircFBXW7 depletion notably emerges as a new factor enhancing a proliferative phenotype and the activation of the MYC signaling pathway, key players in this aggressive malignancy.
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- 2023
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31. A mouse model of hepatic encephalopathy: bile duct ligation induces brain ammonia overload, glial cell activation and neuroinflammation
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Wouter Claeys, Lien Van Hoecke, Anja Geerts, Hans Van Vlierberghe, Sander Lefere, Griet Van Imschoot, Elien Van Wonterghem, Bart Ghesquière, Roosmarijn E. Vandenbroucke, and Christophe Van Steenkiste
- Subjects
Medicine ,Science - Abstract
Abstract Hepatic encephalopathy (HE) is a common complication of chronic liver disease, characterized by an altered mental state and hyperammonemia. Insight into the brain pathophysiology of HE is limited due to a paucity of well-characterized HE models beyond the rat bile duct ligation (BDL) model. Here, we assess the presence of HE characteristics in the mouse BDL model. We show that BDL in C57Bl/6j mice induces motor dysfunction, progressive liver fibrosis, liver function failure and hyperammonemia, all hallmarks of HE. Swiss mice however fail to replicate the same phenotype, underscoring the importance of careful strain selection. Next, in-depth characterisation of metabolic disturbances in the cerebrospinal fluid of BDL mice shows glutamine accumulation and transient decreases in taurine and choline, indicative of brain ammonia overload. Moreover, mouse BDL induces glial cell dysfunction, namely microglial morphological changes with neuroinflammation and astrocyte reactivity with blood–brain barrier (BBB) disruption. Finally, we identify putative novel mechanisms involved in central HE pathophysiology, like bile acid accumulation and tryptophan–kynurenine pathway alterations. Our study provides the first comprehensive evaluation of a mouse model of HE in chronic liver disease. Additionally, this study further underscores the importance of neuroinflammation in the central effects of chronic liver disease.
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- 2022
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32. An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia
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Lien Provez, Bart Van Puyvelde, Laura Corveleyn, Nina Demeulemeester, Sigrid Verhelst, Béatrice Lintermans, Simon Daled, Juliette Roels, Lieven Clement, Lennart Martens, Dieter Deforce, Pieter Van Vlierberghe, and Maarten Dhaenens
- Subjects
Science - Abstract
Measurement(s) histone post-translational modification levels Technology Type(s) mass spectrometry Sample Characteristic - Organism Homo sapiens
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- 2022
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33. S239: SOX11 DRIVES B1A LINEAGE COMMITMENT AND B1A/MCL-LIKE LYMPHOMA FORMATION IN MICE
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Tim Pieters, Luca Pagliaro, Panagiotis Ntziachristos, Pieter Van Vlierberghe, and Steven Goossens
- Subjects
Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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34. P320: A NOVEL MAMMALIAN L-ASPARAGINASE WITH NO L-GLUTAMINASE ACTIVITY IS HIGHLY EFFICACIOUS AGAINST T-CELL ACUTE LYMPHOBLASTIC LEUKEMIA IN VIVO
- Author
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Maaike Van Trimpont, Amanda Schalk, Evelien Peeters, Tim Lammens, Steven Goossens, Arnon Lavie, and Pieter Van Vlierberghe
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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35. P326: A DUAL ROLE FOR PSIP1 IN T-ALL
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Lisa Demoen, Filip Matthijssens, Lindy Reunes, Zeger Debyser, Steven Goossens, and Pieter Van Vlierberghe
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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36. Powdered Cross-Linked Gelatin Methacryloyl as an Injectable Hydrogel for Adipose Tissue Engineering
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Tess De Maeseneer, Lana Van Damme, Merve Kübra Aktan, Annabel Braem, Paula Moldenaers, Sandra Van Vlierberghe, and Ruth Cardinaels
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adipose tissue ,tissue engineering ,cross-linked gelatin methacryloyl ,particulate hydrogel ,injectable hydrogel ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
The tissue engineering field is currently advancing towards minimally invasive procedures to reconstruct soft tissue defects. In this regard, injectable hydrogels are viewed as excellent scaffold candidates to support and promote the growth of encapsulated cells. Cross-linked gelatin methacryloyl (GelMA) gels have received substantial attention due to their extracellular matrix-mimicking properties. In particular, GelMA microgels were recently identified as interesting scaffold materials since the pores in between the microgel particles allow good cell movement and nutrient diffusion. The current work reports on a novel microgel preparation procedure in which a bulk GelMA hydrogel is ground into powder particles. These particles can be easily transformed into a microgel by swelling them in a suitable solvent. The rheological properties of the microgel are independent of the particle size and remain stable at body temperature, with only a minor reversible reduction in elastic modulus correlated to the unfolding of physical cross-links at elevated temperatures. Salts reduce the elastic modulus of the microgel network due to a deswelling of the particles, in addition to triple helix denaturation. The microgels are suited for clinical use, as proven by their excellent cytocompatibility. The latter is confirmed by the superior proliferation of encapsulated adipose tissue-derived stem cells in the microgel compared to the bulk hydrogel. Moreover, microgels made from the smallest particles are easily injected through a 20G needle, allowing a minimally invasive delivery. Hence, the current work reveals that powdered cross-linked GelMA is an excellent candidate to serve as an injectable hydrogel for adipose tissue engineering.
- Published
- 2024
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37. A Learning Theory Approach to Attachment Theory: Exploring Clinical Applications
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Bosmans, Guy, Van Vlierberghe, Leen, Bakermans-Kranenburg, Marian J., Kobak, Roger, Hermans, Dirk, and van IJzendoorn, Marinus H.
- Published
- 2022
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38. Illness cognitions and health-related quality of life in liver transplant patients related to length of stay, comorbidities and complications
- Author
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Onghena, Louis, Berrevoet, Frederik, Vanlander, Aude, Van Vlierberghe, Hans, Verhelst, Xavier, Hoste, Eric, and Poppe, Carine
- Published
- 2022
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39. Genetic characterization and therapeutic targeting of MYC‐rearranged T cell acute lymphoblastic leukaemia
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Milani, Gloria, Matthijssens, Filip, Van Loocke, Wouter, Durinck, Kaat, Roels, Juliette, Peirs, Sofie, Thénoz, Morgan, Pieters, Tim, Reunes, Lindy, Lintermans, Beatrice, Vandamme, Niels, Lammens, Tim, Van Roy, Nadine, Van Nieuwerburgh, Filip, Deforce, Dieter, Schwab, Claire, Raimondi, Susana, Pozza, Luciano Dalla, Carroll, Andrew J, De Moerloose, Barbara, Benoit, Yves, Goossens, Steven, Berx, Geert, Harrison, Christine J, Basso, Giuseppe, Cavé, Hélène, Sutton, Rosemary, Asnafi, Vahid, Meijerink, Jules, Mullighan, Charles, Loh, Mignon, and Van Vlierberghe, Pieter
- Subjects
Animals ,Biomarkers ,Tumor ,DNA Copy Number Variations ,Disease Models ,Animal ,Gene Rearrangement ,Genes ,myc ,Genetic Association Studies ,Genetic Predisposition to Disease ,Humans ,Mice ,Molecular Targeted Therapy ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Translocation ,Genetic ,Xenograft Model Antitumor Assays ,T cell acute lymphoblastic leukaemia ,t(8 ,14)(q24 ,q11) translocation ,BRD4 inhibition ,Cardiorespiratory Medicine and Haematology ,Immunology - Published
- 2019
40. Fanconi-BRCA pathway mutations in childhood T-cell acute lymphoblastic leukemia
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Pouliot, Gayle P, Degar, James, Hinze, Laura, Kochupurakkal, Bose, Vo, Chau D, Burns, Melissa A, Moreau, Lisa, Ganesa, Chirag, Roderick, Justine, Peirs, Sofie, Menten, Bjorn, Loh, Mignon L, Hunger, Stephen P, Silverman, Lewis B, Harris, Marian H, Stevenson, Kristen E, Weinstock, David M, Weng, Andrew P, Van Vlierberghe, Pieter, D’Andrea, Alan D, and Gutierrez, Alejandro
- Subjects
Biological Sciences ,Biomedical and Clinical Sciences ,Genetics ,Oncology and Carcinogenesis ,Hematology ,Pediatric Cancer ,Orphan Drug ,Pediatric ,Childhood Leukemia ,Pediatric Research Initiative ,Cancer ,Rare Diseases ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Animals ,BRCA2 Protein ,Cell Line ,Tumor ,Child ,Fanconi Anemia Complementation Group D2 Protein ,Genes ,BRCA1 ,Genes ,BRCA2 ,Haploinsufficiency ,Heterografts ,Humans ,Jurkat Cells ,Male ,Mice ,Mice ,Inbred NOD ,Mutagenesis ,Site-Directed ,Mutation ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Radiation Tolerance ,Sequence Analysis ,DNA ,Sequence Analysis ,RNA ,Ultraviolet Rays ,General Science & Technology - Abstract
BRCA2 (also known as FANCD1) is a core component of the Fanconi pathway and suppresses transformation of immature T-cells in mice. However, the contribution of Fanconi-BRCA pathway deficiency to human T-cell acute lymphoblastic leukemia (T-ALL) remains undefined. We identified point mutations in 9 (23%) of 40 human T-ALL cases analyzed, with variant allele fractions consistent with heterozygous mutations early in tumor evolution. Two of these mutations were present in remission bone marrow specimens, suggesting germline alterations. BRCA2 was the most commonly mutated gene. The identified Fanconi-BRCA mutations encode hypomorphic or null alleles, as evidenced by their inability to fully rescue Fanconi-deficient cells from chromosome breakage, cytotoxicity and/or G2/M arrest upon treatment with DNA cross-linking agents. Disabling the tumor suppressor activity of the Fanconi-BRCA pathway is generally thought to require biallelic gene mutations. However, all mutations identified were monoallelic, and most cases appeared to retain expression of the wild-type allele. Using isogenic T-ALL cells, we found that BRCA2 haploinsufficiency induces selective hypersensitivity to ATR inhibition, in vitro and in vivo. These findings implicate Fanconi-BRCA pathway haploinsufficiency in the molecular pathogenesis of T-ALL, and provide a therapeutic rationale for inhibition of ATR or other druggable effectors of homologous recombination.
- Published
- 2019
41. Guiding cell migration in 3D with high-resolution photografting
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Simon Sayer, Tommaso Zandrini, Marica Markovic, Jasper Van Hoorick, Sandra Van Vlierberghe, Stefan Baudis, Wolfgang Holnthoner, and Aleksandr Ovsianikov
- Subjects
Medicine ,Science - Abstract
Abstract Multi-photon lithography (MPL) has proven to be a suitable tool to precisely control the microenvironment of cells in terms of the biochemical and biophysical properties of the hydrogel matrix. In this work, we present a novel method, based on multi-photon photografting of 4,4′-diazido-2,2′-stilbenedisulfonic acid (DSSA), and its capabilities to induce cell alignment, directional cell migration and endothelial sprouting in a gelatin-based hydrogel matrix. DSSA-photografting allows for the fabrication of complex patterns at a high-resolution and is a biocompatible, universally applicable and straightforward process that is comparably fast. We have demonstrated the preferential orientation of human adipose-derived stem cells (hASCs) in response to a photografted pattern. Co-culture spheroids of hASCs and human umbilical vein endothelial cells (HUVECs) have been utilized to study the directional migration of hASCs into the modified regions. Subsequently, we have highlighted the dependence of endothelial sprouting on the presence of hASCs and demonstrated the potential of photografting to control the direction of the sprouts. MPL-induced DSSA-photografting has been established as a promising method to selectively alter the microenvironment of cells.
- Published
- 2022
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42. Design of an electrospun tubular construct combining a mechanical and biological approach to improve tendon repair
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N. Pien, Y. Van de Maele, L. Parmentier, M. Meeremans, A. Mignon, C. De Schauwer, I. Peeters, L. De Wilde, A. Martens, D. Mantovani, S. Van Vlierberghe, and P. Dubruel
- Subjects
Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Medical technology ,R855-855.5 - Abstract
Highlights Synthesis of a novel acrylate-endcapped urethane-based precursor (AUP). Physico-chemical characterization of the developed AUP material. Development of a reinforced electrospun tubular repair construct containing bioactive components. Mechanical evaluation of the repair constructs on ex vivo sheep tendons. Biological evaluation of the repair constructs by means of indirect and direct testing using mono- and co-cultures.
- Published
- 2022
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43. RNA helicase DHX15 exemplifies a unique dependency in acute leukemia
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Hao Guo, Jin Xu, Peiqi Xing, Qilong Li, Donghai Wang, Chao Tang, Bruno Palhais, Juliette Roels, Jiaxu Liu, Sa Pan, Jinyan Huang, Zhaoqi Liu, Ping Zhu, Tom Taghon, Guoliang Qing, Pieter Van Vlierberghe, and Hudan Liu
- Subjects
Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
RNA-binding proteins (RBP) have emerged as essential regulators that control gene expression and modulate multiple cancer traits. T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive hematologic malignancy derived from transformation of T-cell progenitors that normally undergo discrete steps of differentiation in the thymus. The implications of essential RBP during T-cell neoplastic transformation remain largely unclear. Systematic evaluation of RBP identifies RNA helicase DHX15, which facilitates the disassembly of the spliceosome and release of lariat introns, as a T-ALL dependency factor. Functional analysis using multiple murine T-ALL models demonstrates the essential importance of DHX15 in tumor cell survival and leukemogenesis. Moreover, single-cell transcriptomics reveals that DHX15 depletion in T-cell progenitors hinders burst proliferation during the transition from doublenegative to double-positive cells (CD4-CD8- to CD4+CD8+). Mechanistically, abrogation of DHX15 perturbs RNA splicing and leads to diminished levels of SLC7A6 and SLC38A5 transcripts due to intron retention, thereby suppressing glutamine import and mTORC1 activity. We further propose a DHX15 signature modulator drug ciclopirox and demonstrate that it has prominent anti-T-ALL efficacy. Collectively, our data highlight the functional contribution of DHX15 to leukemogenesis through regulation of established oncogenic pathways. These findings also suggest a promising therapeutic approach, i.e., splicing perturbation by targeting spliceosome disassembly, may achieve considerable anti-tumor efficacy.
- Published
- 2023
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44. AFP score and metroticket 2.0 perform similarly and could be used in a 'within-ALL' clinical decision tool
- Author
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Federico Piñero, Charlotte Costentin, Helena Degroote, Andrea Notarpaolo, Ilka FSF. Boin, Karim Boudjema, Cinzia Baccaro, Aline Chagas, Philippe Bachellier, Giuseppe Maria Ettorre, Jaime Poniachik, Fabrice Muscari, Fabrizio Dibenedetto, Sergio Hoyos Duque, Ephrem Salame, Umberto Cillo, Sebastián Marciano, Claire Vanlemmens, Stefano Fagiuoli, Flair Carrilho, Daniel Cherqui, Patrizia Burra, Hans Van Vlierberghe, Quirino Lai, Marcelo Silva, Fernando Rubinstein, Christophe Duvoux, Filomena Conti, Olivier Scatton, Pierre Henri Bernard, Claire Francoz, Francois Durand, Sébastien Dharancy, Marie-lorraine Woehl, Alexis Laurent, Sylvie Radenne, Jérôme Dumortier, Armand Abergel, Louise Barbier, Pauline Houssel-Debry, Georges Philippe Pageaux, Laurence Chiche, Victor Deledinghen, Jean Hardwigsen, J. Gugenheim, M. altieri, Marie Noelle Hilleret, Thomas Decaens, Paulo Costa, Elaine Cristina de Ataide, Emilio Quiñones, Margarita Anders, Adriana Varón, Alina Zerega, Alejandro Soza, Martín Padilla Machaca, Diego Arufe, Josemaría Menéndez, Rodrigo Zapata, Mario Vilatoba, Linda Muñoz, Ricardo Chong Menéndez, Martín Maraschio, Luis G. Podestá, Lucas McCormack, Juan Mattera, Adrian Gadano, Jose Huygens Parente García, Giulia Magini, Lucia Miglioresi, Martina Gambato, Cecilia D’Ambrosio, Alessandro Vitale, Michele Colledan, Domenico Pinelli, Paolo Magistri, Giovanni Vennarecci, Marco Colasanti, Valerio Giannelli, Adriano Pellicelli, Callebout Eduard, Iesari Samuele, Dekervel Jeroen, Schreiber Jonas, Pirenne Jacques, Verslype Chris, Ysebaert Dirk, Michielsen Peter, Lucidi Valerio, Moreno Christophe, Detry Olivier, Delwaide Jean, Troisi Roberto, and Lerut Jan Paul
- Subjects
Prediction ,reclassification ,recurrence ,transplantation ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: Two recently developed composite models, the alpha-fetoprotein (AFP) score and Metroticket 2.0, could be used to select patients with hepatocellular carcinoma (HCC) who are candidates for liver transplantation (LT). The aim of this study was to compare the predictive performance of both models and to evaluate the net risk reclassification of post-LT recurrence between them using each model’s original thresholds. Methods: This multicenter cohort study included 2,444 adult patients who underwent LT for HCC in 47 centers from Europe and Latin America. A competing risk regression analysis estimating sub-distribution hazard ratios (SHRs) and 95% CIs for recurrence was used (Fine and Gray method). Harrell’s adapted c-statistics were estimated. The net reclassification index for recurrence was compared based on each model’s original thresholds. Results: During a median follow-up of 3.8 years, there were 310 recurrences and 496 competing events (20.3%). Both models predicted recurrence, HCC survival and survival better than Milan criteria (p
- Published
- 2023
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45. Concurrent Ocular and Cerebral Toxoplasmosis in a Liver Transplant Patient Treated with Anti-CD40 Monoclonal Antibody
- Author
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Roos Van Den Noortgate, Maja Kiselinova, Céline Sys, Geraldine Accou, Guy Laureys, Hans Van Vlierberghe, Frederik Berrevoet, and Elke O. Kreps
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Toxoplasma gondii, an obligate intracellular parasitic protozoon, usually causes a mild, acute infection followed by a latent asymptomatic phase with tissue cysts or a chronic form with recurrent retinochoroiditis. However, immunocompromised patients can cause disseminated disease due to the reactivation of the latent tissue cysts or due to a primary infection. Here, we present a rare case of bilateral ocular toxoplasmosis and concurrent subacute toxoplasma encephalitis in a 70-year-old patient on anti-CD40 treatment following his liver transplant. The diagnosis was confirmed by PCR of anterior chamber fluid and brain biopsy, and no other sites of disseminated disease were detected on PET-CT. The patient has been treated with sulfamethoxazole-trimethoprim 800/160 mg with virtually complete resolution of the neurological and ocular symptoms. Iatrogenic blockade of the CD40 pathway may elicit a particular susceptibility for CNS reactivation of T. gondii.
- Published
- 2023
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46. PRC2 loss induces chemoresistance by repressing apoptosis in T cell acute lymphoblastic leukemia
- Author
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Ariës, Ingrid M, Bodaar, Kimberly, Karim, Salmaan A, Chonghaile, Triona Ni, Hinze, Laura, Burns, Melissa A, Pfirrmann, Maren, Degar, James, Landrigan, Jack T, Balbach, Sebastian, Peirs, Sofie, Menten, Björn, Isenhart, Randi, Stevenson, Kristen E, Neuberg, Donna S, Devidas, Meenakshi, Loh, Mignon L, Hunger, Stephen P, Teachey, David T, Rabin, Karen R, Winter, Stuart S, Dunsmore, Kimberly P, Wood, Brent L, Silverman, Lewis B, Sallan, Stephen E, Van Vlierberghe, Pieter, Orkin, Stuart H, Knoechel, Birgit, Letai, Anthony G, and Gutierrez, Alejandro
- Subjects
Childhood Leukemia ,Hematology ,Genetics ,Cancer ,Stem Cell Research ,Pediatric ,Rare Diseases ,Pediatric Cancer ,Development of treatments and therapeutic interventions ,1.1 Normal biological development and functioning ,Underpinning research ,5.1 Pharmaceuticals ,Antineoplastic Agents ,Apoptosis ,Cell Line ,Tumor ,Drug Resistance ,Neoplasm ,Female ,Gene Expression Regulation ,Leukemic ,Humans ,Male ,Mitochondria ,Neoplasm Proteins ,Polycomb Repressive Complex 2 ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Transcription ,Genetic ,Up-Regulation ,Medical and Health Sciences ,Immunology - Abstract
The tendency of mitochondria to undergo or resist BCL2-controlled apoptosis (so-called mitochondrial priming) is a powerful predictor of response to cytotoxic chemotherapy. Fully exploiting this finding will require unraveling the molecular genetics underlying phenotypic variability in mitochondrial priming. Here, we report that mitochondrial apoptosis resistance in T cell acute lymphoblastic leukemia (T-ALL) is mediated by inactivation of polycomb repressive complex 2 (PRC2). In T-ALL clinical specimens, loss-of-function mutations of PRC2 core components (EZH2, EED, or SUZ12) were associated with mitochondrial apoptosis resistance. In T-ALL cells, PRC2 depletion induced resistance to apoptosis induction by multiple chemotherapeutics with distinct mechanisms of action. PRC2 loss induced apoptosis resistance via transcriptional up-regulation of the LIM domain transcription factor CRIP2 and downstream up-regulation of the mitochondrial chaperone TRAP1 These findings demonstrate the importance of mitochondrial apoptotic priming as a prognostic factor in T-ALL and implicate mitochondrial chaperone function as a molecular determinant of chemotherapy response.
- Published
- 2018
47. An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia
- Author
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Provez, Lien, Van Puyvelde, Bart, Corveleyn, Laura, Demeulemeester, Nina, Verhelst, Sigrid, Lintermans, Béatrice, Daled, Simon, Roels, Juliette, Clement, Lieven, Martens, Lennart, Deforce, Dieter, Van Vlierberghe, Pieter, and Dhaenens, Maarten
- Published
- 2022
- Full Text
- View/download PDF
48. A mouse model of hepatic encephalopathy: bile duct ligation induces brain ammonia overload, glial cell activation and neuroinflammation
- Author
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Claeys, Wouter, Van Hoecke, Lien, Geerts, Anja, Van Vlierberghe, Hans, Lefere, Sander, Van Imschoot, Griet, Van Wonterghem, Elien, Ghesquière, Bart, Vandenbroucke, Roosmarijn E., and Van Steenkiste, Christophe
- Published
- 2022
- Full Text
- View/download PDF
49. Publisher Correction: Guiding cell migration in 3D with high-resolution photografting
- Author
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Sayer, Simon, Zandrini, Tommaso, Markovic, Marica, Van Hoorick, Jasper, Van Vlierberghe, Sandra, Baudis, Stefan, Holnthoner, Wolfgang, and Ovsianikov, Aleksandr
- Published
- 2022
- Full Text
- View/download PDF
50. Guiding cell migration in 3D with high-resolution photografting
- Author
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Sayer, Simon, Zandrini, Tommaso, Markovic, Marica, Van Hoorick, Jasper, Van Vlierberghe, Sandra, Baudis, Stefan, Holnthoner, Wolfgang, and Ovsianikov, Aleksandr
- Published
- 2022
- Full Text
- View/download PDF
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