110 results on '"Vandenberghe, I."'
Search Results
2. Recombinant expression of trypanosome surface glycoproteins in Pichia pastoris for the diagnosis of Trypanosoma evansi infection
- Author
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Rogé, S., Van Reet, N., Odiwuor, S., Tran, T., Schildermans, K., Vandamme, S., Vandenberghe, I., Vervecken, W., Gillingwater, K., Claes, F., Devreese, B., Guisez, Y., and Büscher, P.
- Published
- 2013
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- View/download PDF
3. F14512, a polyamine-vectorized anti-cancer drug, currently in clinical trials exhibits a marked preclinical anti-leukemic activity
- Author
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Kruczynski, A, Pillon, A, Créancier, L, Vandenberghe, I, Gomes, B, Brel, V, Fournier, E, Annereau, J-P, Currie, E, Guminski, Y, Bonnet, D, Bailly, C, and Guilbaud, N
- Published
- 2013
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4. Novel tetra-acridine derivatives as dual inhibitors of topoisomerase II and the human proteasome
- Author
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Vispé, S., Vandenberghe, I., Robin, M., Annereau, J.P., Créancier, L., Pique, V., Galy, J.P., Kruczynski, A., Barret, J.M., and Bailly, C.
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- 2007
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5. Amino Acid Sequences and Distribution of High-Potential Iron–Sulfur Proteins That Donate Electrons to the Photosynthetic Reaction Center in Phototropic Proteobacteria
- Author
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Van Driessche, G., Vandenberghe, I., Devreese, B., Samyn, B., Meyer, T. E., Leigh, R., Cusanovich, M. A., Bartsch, R. G., Fischer, U., and Van Beeumen, J. J.
- Published
- 2003
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6. Identification of a small tetraheme cytochrome c and a flavocytochrome c as two of the principal soluble cytochromes c in Shewanella oneidensis strain MR1
- Author
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Tsapin, A.I., Vandenberghe, I., Nealson, K.H., Scott, J.H., Meyer, T.E., Cusanovich, M.A., Harada, E., Kaizu, T., Akutsu, H., Leys, D., and Van Beeumen, J.J.
- Subjects
Cytochromes -- Research ,Microbial enzymes -- Research ,Biological sciences - Abstract
Researchers describe two cytochromes in Shewanella oneidensis strain MR1. This bacterium is the object of intense research because it can reduce and dissolve insoluble metal oxides. For this reason, it could be used in bioremediation.
- Published
- 2001
7. Cell-wall-bound proteinase of Lactobacillus delbrueckii subsp. lactis ACA-DC 178: characterization and specificity for beta-casein
- Author
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Tsakalidou, E., Anastasiou, R., Vandenberghe, I., Beeumen, J. van, and Kalantzopoulos, G.
- Subjects
Lactobacillus -- Research ,Microbial enzymes -- Research ,Biological sciences - Abstract
The cell-wall bound proteinase produced by Lactobacillus delbrueckii subsp. lactis ACA-DC 178 is similar to the lactococcal P(sub 1)-type proteinases, since it predominantly hydrolyzes beta-casein and alpha- and kappa-caseins to a much lesser degree. The action of the proteinase on beta-casein also liberates four main peptides from beta-casein, all located in the C-terminal part of the molecule. The crude proteinase exhibited maximum activity at pH 6.0 and at 40 degrees C.
- Published
- 1999
8. Atomic resolution structure of the major endoglucanase from Thermoascus aurantiacus
- Author
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Van Petegem, F., Vandenberghe, I., Bhat, M.K., and Van Beeumen, J.
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- 2002
- Full Text
- View/download PDF
9. Atlas of INSPIRE : evaluating SDI development through an inventory of INSPIRE experiences of European national mapping agencies
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De Vries, W.T., Crompvoets, J., Stoter, J., VandenBerghe, I., and Department of Urban and Regional Planning and Geo-Information Management
- Subjects
cultivation ,design ,METIS-304174 ,INSPIRE ,SDI ,information infrastructure theory - Abstract
The paper describes how practice of INSPIRE implementation are affecting Spatial Data Infrastructure (SDI) development. It contains the results of a EuroSDR (European Spatial Data Research) project ‘Atlas of INSPIRE implementation methods’. Aim of the project was to make an inventory of experiences when implementing INSPIRE, in order to share exemplary practices and solutions among national mapping agencies and national INSPIRE contact points. This inventory formed the basis for the generation of the prototype Atlas for all national mapping agencies, policy makers and other stakeholders who have to implement INSPIRE. For SDI research the Atlas provides empirical base material for the conceptualization of SDI implementation approaches. The analytical framework to look at INSPIRE implementation drew on two theoretical notions of how implementation actions can lead to information infrastructure development: a cultivation approach and a design approach. A qualitative data collection process, through a survey and two workshops, tested the extent to which either of the two approaches were prevalent for the INSPIRE implementation. The survey and the workshops provided primary data on INSPIRE implementation experiences of representatives from twelve European countries (Belgium, Bulgaria, Croatia, Cyprus, France, Germany, Netherlands, Poland Slovakia, Sweden, Switzerland, United Kingdom). Comparing the national experiences showed that both types of approaches of INSPIRE implementation are present the EU countries. The cultivation approach is more prevalent in countries which established SDI organizational structures outside the NMAs, and the design approach is more prevalent in countries relying solely on NMAs for INSPIRE implementation. Embedding INSPIRE implementation in national SDI activities seems furthermore to relate to cultivation approaches, consisting of a gradually flatter inter-organizational working relations, and a scaling up strategy which iteratively links the (supra)national implementation plans of INSPIRE to the local implementation plans in national and sub national organizations, and vice versa. The variety in approaches imply that a uniform, best practice, INSPIRE implementation approach for all countries does exist, but that the choices for certain practices strongly relate to the local contextual conditions and windows of opportunities. The implication of these findings for research in SDI development is that more emphasis should be placed on the mechanism of interaction between the slowly changing socio-organizational context and rapidly technologies.
- Published
- 2011
10. Identification of a Small Tetraheme Cytochrome c and a Flavocytochrome c as Two of the Principal Soluble Cytochromes c in Shewanella oneidensis Strain MR1
- Author
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Tsapin, A. I., Vandenberghe, I., Nealson, K. H., Scott, J. H., Meyer, T. E., Cusanovich, M. A., Harada, E., Kaizu, T., Akutsu, H., Leys, D., and Van Beeumen, J. J.
- Subjects
Shewanella ,Fumarates ,Transcription, Genetic ,Molecular Sequence Data ,bacteria ,Cytochrome c Group ,Amino Acid Sequence ,Anaerobiosis ,Gene Expression Regulation, Bacterial ,Sequence Analysis, DNA ,Physiology and Biotechnology ,Oxidoreductases ,Oxidation-Reduction - Abstract
Two abundant, low-redox-potential cytochromes c were purified from the facultative anaerobe Shewanella oneidensis strain MR1 grown anaerobically with fumarate. The small cytochrome was completely sequenced, and the genes coding for both proteins were cloned and sequenced. The small cytochrome c contains 91 residues and four heme binding sites. It is most similar to the cytochromes c from Shewanella frigidimarina (formerly Shewanella putrefaciens) NCIMB400 and the unclassified bacterial strain H1R (64 and 55% identity, respectively). The amount of the small tetraheme cytochrome is regulated by anaerobiosis, but not by fumarate. The larger of the two low-potential cytochromes contains tetraheme and flavin domains and is regulated by anaerobiosis and by fumarate and thus most nearly corresponds to the flavocytochrome c-fumarate reductase previously characterized from S. frigidimarina to which it is 59% identical. However, the genetic context of the cytochrome genes is not the same for the two Shewanella species, and they are not located in multicistronic operons. The small cytochrome c and the cytochrome domain of the flavocytochrome c are also homologous, showing 34% identity. Structural comparison shows that the Shewanella tetraheme cytochromes are not related to the Desulfovibrio cytochromes c(3) but define a new folding motif for small multiheme cytochromes c.
- Published
- 2001
11. Identification and characterization of novel chromogranin B-derived peptides from porcine chromaffin granules by liquid chromatography/electrospray tandem mass spectrometry
- Author
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Wang, Z., Vandenberghe, I., Depreitere, Jan, Devreese, B., Vandesande, F., Nouwen, Etienne, van Beeumen, J., and de Potter, Werner
- Published
- 2001
12. Atlas of INSPIRE: Evaluating SDI Development through an Inventory of INSPIRE Experiences of European National Mapping Agencies
- Author
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De Vries, W.T. (author), Crompvoets, J. (author), Stoter, J. (author), VandenBerghe, I. (author), De Vries, W.T. (author), Crompvoets, J. (author), Stoter, J. (author), and VandenBerghe, I. (author)
- Abstract
The paper describes how practice of INSPIRE implementation are affecting Spatial Data Infrastructure (SDI) development. It contains the results of a EuroSDR (European Spatial Data Research) project ‘Atlas of INSPIRE implementation methods’. Aim of the project was to make an inventory of experiences when implementing INSPIRE, in order to share exemplary practices and solutions among national mapping agencies and national INSPIRE contact points. This inventory formed the basis for the generation of the prototype Atlas for all national mapping agencies, policy makers and other stakeholders who have to implement INSPIRE. For SDI research the Atlas provides empirical base material for the conceptualization of SDI implementation approaches. The analytical framework to look at INSPIRE implementation drew on two theoretical notions of how implementation actions can lead to information infrastructure development: a cultivation approach and a design approach. A qualitative data collection process, through a survey and two workshops, tested the extent to which either of the two approaches were prevalent for the INSPIRE implementation. The survey and the workshops provided primary data on INSPIRE implementation experiences of representatives from twelve European countries (Belgium, Bulgaria, Croatia, Cyprus, France, Germany, Netherlands, Poland Slovakia, Sweden, Switzerland, United Kingdom). Comparing the national experiences showed that both types of approaches of INSPIRE implementation are present the EU countries. The cultivation approach is more prevalent in countries which established SDI organizational structures outside the NMAs, and the design approach is more prevalent in countries relying solely on NMAs for INSPIRE implementation. Embedding INSPIRE implementation in national SDI activities seems furthermore to relate to cultivation approaches, consisting of a gradually flatter inter-organizational working relations, and a scaling up strategy which iteratively links th, Built Environment, OTB Research Institute for the Built Environment
- Published
- 2011
- Full Text
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13. 925 F14512, a Polyamine Vectorized Anti-cancer Drug Exhibits a Marked Antileukemic Activity, Alone and in Combination With AraC
- Author
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Kruczynski, A., primary, Pillon, A., additional, Créancier, L., additional, Vandenberghe, I., additional, Gomes, B., additional, Brel, V., additional, Cartron, V., additional, Chansard, N., additional, Verdier, J., additional, Guilbaud, N., additional, and Annereau, J.-P., additional
- Published
- 2012
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14. P035. Melanoma chemotherapy leads to the selection of ABCB5-expressing cells
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Chartrain, M., primary, Riond, J., additional, Stennevin, A., additional, Vandenberghe, I., additional, Gomes, B., additional, Gairin, J.E., additional, Guilbaud, N., additional, and Annereau, J.P., additional
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- 2011
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15. 273 Use of bioluminescence imaging and quantitative RT-PCR to monitor tumor progression and treatment response in orthotopic AML mouse models: Application to the targeted cytotoxic agent F14512
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Creancier, L., primary, Pillon, A., additional, Verdier, J., additional, Chansard, N., additional, Pourtau, S., additional, Vandenberghe, I., additional, Recher, C., additional, Guilbaud, N., additional, and Bailly, C., additional
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- 2010
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16. Atomic resolution structure of the major endoglucanase from Thermoascus aurantiacus
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Van Petegem, F., primary, Vandenberghe, I., additional, Bhat, M.K., additional, and Van Beeumen, J., additional
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- 2002
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17. Mass spectrometric identification ofin vivo carbamylation of the amino terminus ofEctothiorhodospira mobilis high-potential iron-sulfur protein, isozyme 1
- Author
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Van Driessche, G., primary, Vandenberghe, I., additional, Jacquemotte, F., additional, Devreese, B., additional, and Van Beeumen, J. J., additional
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- 2002
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18. Cell-Wall-Bound Proteinase of Lactobacillus delbrueckii subsp. lactis ACA-DC 178: Characterization and Specificity for β-Casein
- Author
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Tsakalidou, E., primary, Anastasiou, R., additional, Vandenberghe, I., additional, van Beeumen, J., additional, and Kalantzopoulos, G., additional
- Published
- 1999
- Full Text
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19. Mass spectrometric identification of in vivo carbamylation of the amino terminus of Ectothiorhodospira mobilis high-potential iron-sulfur protein, isozyme 1.
- Author
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Van Driessche, G., Vandenberghe, I., Jacquemotte, F., Devreese, B., and Van Beeumen, J. J.
- Published
- 2002
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20. Identification of &bgr;-endorphins in the pituitary gland and blood plasma of the common carp (Cyprinus carpio).
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van den Burg, E. H., Metz, J. R., Arends, R. J., Devreese, B., Vandenberghe, I., Van Beeumen, J., Bonga, S. E. Wendelaar, and Flik, G.
- Published
- 2001
21. Mass spectrometric identification of <TOGGLE>in vivo</TOGGLE> carbamylation of the amino terminus of <TOGGLE>Ectothiorhodospira mobilis</TOGGLE> high-potential ironsulfur protein, isozyme 1
- Author
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Driessche, G. Van, Vandenberghe, I., Jacquemotte, F., Devreese, B., and Beeumen, J. J. Van
- Abstract
The complete amino acid sequence of a novel high-potential ironsulfur protein (HiPIP) isozyme 1 from the moderately halophilic phototrophic bacterium Ectothiorhodospira mobilis was determined by a combined approach of chemical and mass spectrometric sequencing techniques. By mass analysis of the apo- and holo-protein in the positive electrospray ionization mode using different electrospray solvents, the protein was found to be post-translationally modified by a moiety of 43 Da. Further analysis showed the nature and location of this modification to be a carbamyl group at the N-terminus of the HiPIP. This rare type of modification has previously been reported to occur in the water-soluble human lens αB-crystallin, class D β-lactamases and some prokaryotic ureases, albeit at an internal lysine residue. In this paper, we discuss the mass spectrometric features of a carbamylated residue at the N-terminus of a peptide or a lysine side-chain during sequence analysis by collision-induced dissociation tandem mass spectrometry. Our data provide evidence for the first case of a prokaryotic carbamylated electron transport protein occurring in vivo. Copyright © 2002 John Wiley & Sons, Ltd.
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- 2002
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22. The covalent structure of the small subunit from Pseudomonas putida amine dehydrogenase reveals the presence of three novel types of internal cross-linkages, all involving cysteine in a thioether bond.
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Vandenberghe, I, Kim, J K, Devreese, B, Hacisalihoglu, A, Iwabuki, H, Okajima, T, Kuroda, S, Adachi, O, Jongejan, J A, Duine, J A, Tanizawa, K, and Van Beeumen, J
- Abstract
Pseudomonas putida contains an amine dehydrogenase that is called a quinohemoprotein as it contains a quinone and two hemes c as redox active groups. Amino acid sequence analysis of the smallest (8.5 kDa), quinone-cofactor-bearing subunit of this heterotrimeric enzyme encountered difficulties in the interpretation of the results at several sites of the polypeptide chain. As this suggested posttranslational modifications of the subunit, the structural genes for this enzyme were determined and mass spectrometric de novo sequencing was applied to several peptides obtained by chemical or enzymatic cleavage. In agreement with the interpretation of the X-ray electronic densities in the diffraction data for the holoenzyme, our results show that the polypeptide of the small subunit contains four intrachain cross-linkages in which the sulfur atom of a cysteine residue is involved. Two of these cross-linkages occur with the beta-carbon atom of an aspartic acid, one with the gamma-carbon atom of a glutamic acid and the fourth with a tryptophanquinone residue, this adduct constituting the enzyme's quinone cofactor, CTQ. The thioether type bond in all four of these adducts has never been found in other proteins. CTQ is a novel cofactor in the series of the recently discovered quinone cofactors.
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- 2001
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23. The covalent structure of the small subunit from Pseudomonas putida amine dehydrogenase reveals the presence of three novel types of internal cross-linkages, all involving cysteine in a thioether bond
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Vandenberghe, I., Kim, Jk, and Bart Devreese
24. Amino acid sequences and distribution of high-potential iron-sulfur proteins that donate electrons to the photosynthetic reaction center in phototropic proteobacteria
- Author
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Driessche, G., Vandenberghe, I., and Bart Devreese
25. Mass spectrometric identification of in vivo carbamylation of the amino terminus of Ectothiorhodospira mobilis high-potential iron-sulfur protein, isozyme 1
- Author
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Driessche, G., Vandenberghe, I., and Jacquemotte, F.
26. Patterns of Antipsychotic Use in Belgian Nursing Homes 2017-2022: Admission is a Decision Point.
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Vandenberghe I, Kestens W, Bruyneel L, Van der Linden L, and Tournoy J
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- Humans, Belgium, Male, Female, Retrospective Studies, Aged, Aged, 80 and over, Practice Patterns, Physicians' statistics & numerical data, Nursing Homes statistics & numerical data, Antipsychotic Agents therapeutic use, Antipsychotic Agents administration & dosage
- Abstract
Objectives: Chronic antipsychotic use among nursing home (NH) residents carries risks with uncertain benefits. Despite guidelines recommending restricted use, these agents remain widely prescribed. This study investigates chronic antipsychotic use in Belgian NHs., Design: We examined the evolution of chronic antipsychotic use, associated NH resident profiles, impact of NH admissions, and variation among Belgian NHs in a retrospective dynamic cohort study between 2017 and 2022., Setting and Participants: Antipsychotic dispensation rates were extracted for members of the Independent Health Insurance Funds in NHs. Prescription trends and resident profiles were evaluated for around 15,000 residents yearly (n = 14,733-15,451) from 2017 to 2022 and variation was assessed among 59 NHs. The impact of NH admission was analyzed for 9647 admissions between 2020 and 2022, and variation was evaluated among 22 NHs., Methods: For 22 antipsychotics identified at the ATC3 level, chronic use was defined as ≥80 defined daily doses (DDD) and/or ≥16 weekly dispensations per year. We analyzed changes in the 4 most frequently used antipsychotics (haloperidol, olanzapine, quetiapine, risperidone) on NH admission, with chronic use defined as ≥80 minimal prescribed doses (MPD) annually., Results: The prevalence of chronic antipsychotic use among NH residents decreased from 24% in 2017 to 22.5% in 2022 (P = .002). Factors associated with higher antipsychotic use included younger age, greater dependency, and lower socioeconomic status. Upon NH admission, 30% (n = 818 of 2723) of residents discontinued treatment, while in 33% (n = 949 of 2854) treatment was initiated, predominantly with quetiapine or risperidone. This led to a small but significant increase of 1.4% after admission (P < .001). Defining chronic use as ≥80 MPD annually appeared to be more sensitive in measuring chronic antipsychotic use., Conclusions and Implications: Chronic antipsychotic use remains widespread in Belgian NHs, with care transition as an important decision point. Further research should explore effects of safer (de)prescribing strategies on patient well-being., Competing Interests: Disclosures The authors declare no conflicts of interest., (Copyright © 2024 Post-Acute and Long-Term Care Medical Association. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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27. Revision of the sophorolipid biosynthetic pathway in Starmerella bombicola based on new insights in the substrate profile of its lactone esterase.
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Diao Z, Roelants SLKW, Luyten G, Goeman J, Vandenberghe I, Van Driessche G, De Maeseneire SL, Soetaert WK, and Devreese B
- Abstract
Background: Sophorolipids (SLs) are a class of natural, biodegradable surfactants that found their way as ingredients for environment friendly cleaning products, cosmetics and nanotechnological applications. Large-scale production relies on fermentations using the yeast Starmerella bombicola that naturally produces high titers of SLs from renewable resources. The resulting product is typically an extracellular mixture of acidic and lactonic congeners. Previously, we identified an esterase, termed Starmerella bombicola lactone esterase (SBLE), believed to act as an extracellular reverse lactonase to directly use acidic SLs as substrate., Results: We here show based on newly available pure substrates, HPLC and mass spectrometric analysis, that the actual substrates of SBLE are in fact bola SLs, revealing that SBLE actually catalyzes an intramolecular transesterification reaction. Bola SLs contain a second sophorose attached to the fatty acyl group that acts as a leaving group during lactonization., Conclusions: The biosynthetic function by which the Starmerella bombicola 'lactone esterase' converts acidic SLs into lactonic SLs should be revised to a 'transesterase' where bola SL are the true intermediate. This insights paves the way for alternative engineering strategies to develop designer surfactants., (© 2024. The Author(s).)
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- 2024
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28. Tumor Cells Hijack Macrophage-Produced Complement C1q to Promote Tumor Growth.
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Roumenina LT, Daugan MV, Noé R, Petitprez F, Vano YA, Sanchez-Salas R, Becht E, Meilleroux J, Clec'h BL, Giraldo NA, Merle NS, Sun CM, Verkarre V, Validire P, Selves J, Lacroix L, Delfour O, Vandenberghe I, Thuilliez C, Keddani S, Sakhi IB, Barret E, Ferré P, Corvaïa N, Passioukov A, Chetaille E, Botto M, de Reynies A, Oudard SM, Mejean A, Cathelineau X, Sautès-Fridman C, and Fridman WH
- Subjects
- Animals, Apoptosis, Carcinoma, Renal Cell immunology, Carcinoma, Renal Cell metabolism, Cell Proliferation, Complement Activation, Complement C1q metabolism, Complement C3 metabolism, Complement C4 metabolism, Female, Follow-Up Studies, Humans, Immunologic Factors metabolism, Kidney Neoplasms immunology, Kidney Neoplasms metabolism, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Middle Aged, Prognosis, Prospective Studies, Retrospective Studies, Survival Rate, Tumor Cells, Cultured, Carcinoma, Renal Cell pathology, Complement C1q immunology, Complement C3 immunology, Complement C4 immunology, Kidney Neoplasms pathology, Macrophages immunology, Tumor Microenvironment immunology
- Abstract
Clear-cell renal cell carcinoma (ccRCC) possesses an unmet medical need, particularly at the metastatic stage, when surgery is ineffective. Complement is a key factor in tissue inflammation, favoring cancer progression through the production of complement component 5a (C5a). However, the activation pathways that generate C5a in tumors remain obscure. By data mining, we identified ccRCC as a cancer type expressing concomitantly high expression of the components that are part of the classical complement pathway. To understand how the complement cascade is activated in ccRCC and impacts patients' clinical outcome, primary tumors from three patient cohorts ( n = 106, 154, and 43), ccRCC cell lines, and tumor models in complement-deficient mice were used. High densities of cells producing classical complement pathway components C1q and C4 and the presence of C4 activation fragment deposits in primary tumors correlated with poor prognosis. The in situ orchestrated production of C1q by tumor-associated macrophages (TAM) and C1r, C1s, C4, and C3 by tumor cells associated with IgG deposits, led to C1 complex assembly, and complement activation. Accordingly, mice deficient in C1q, C4, or C3 displayed decreased tumor growth. However, the ccRCC tumors infiltrated with high densities of C1q-producing TAMs exhibited an immunosuppressed microenvironment, characterized by high expression of immune checkpoints (i.e., PD-1, Lag-3, PD-L1, and PD-L2). Our data have identified the classical complement pathway as a key inflammatory mechanism activated by the cooperation between tumor cells and TAMs, favoring cancer progression, and highlight potential therapeutic targets to restore an efficient immune reaction to cancer., (©2019 American Association for Cancer Research.)
- Published
- 2019
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29. Structure and oligomerization of the periplasmic domain of GspL from the type II secretion system of Pseudomonas aeruginosa.
- Author
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Fulara A, Vandenberghe I, Read RJ, Devreese B, and Savvides SN
- Subjects
- Amino Acid Sequence, Models, Molecular, Protein Domains, Protein Structure, Quaternary, Bacterial Proteins chemistry, Bacterial Proteins metabolism, Periplasm metabolism, Protein Multimerization, Pseudomonas aeruginosa metabolism, Type II Secretion Systems metabolism
- Abstract
The ability of bacteria to infect a host relies in part on the secretion of molecular virulence factors across the cell envelope. Pseudomonas aeruginosa, a ubiquitous environmental bacterium causing opportunistic infections in humans, employs the type II secretion system (T2SS) to transport effector proteins across its cellular envelope as part of a diverse array of virulence strategies. General secretory pathway protein L (GspL) is an essential inner-membrane component of the T2SS apparatus, and is thought to facilitate transduction of the energy from ATP hydrolysis in the cytoplasm to the periplasmic components of the system. However, our incomplete understanding of the assembly principles of the T2SS machinery prevents the mechanistic deconvolution of T2SS-mediated protein secretion. Here we show via two crystal structures that the periplasmic ferredoxin-like domain of GspL (GspL
fld ) is a dimer stabilized by hydrophobic interactions, and that this interface may allow significant interdomain plasticity. The general dimerization mode of GspLfld is shared with GspL from Vibrio parahaemolyticus suggesting a conserved oligomerization mode across the GspL family. Furthermore, we identified a tetrameric form of the complete periplasmic segment of GspL (GspLperi ) which indicates that GspL may be able to adopt multiple oligomeric states as part of its dynamic role in the T2SS apparatus.- Published
- 2018
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30. Targeting Protumoral Tumor-Associated Macrophages with Nanobody-Functionalized Nanogels through Strain Promoted Azide Alkyne Cycloaddition Ligation.
- Author
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Nuhn L, Bolli E, Massa S, Vandenberghe I, Movahedi K, Devreese B, Van Ginderachter JA, and De Geest BG
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- Alkynes, Azides, Cycloaddition Reaction, Humans, Mannose Receptor, Micelles, Neoplasms immunology, Polymers, Antibodies, Monoclonal immunology, Drug Carriers chemical synthesis, Immunotherapy methods, Lectins, C-Type immunology, Macrophages drug effects, Mannose-Binding Lectins immunology, Neoplasms therapy, Receptors, Cell Surface immunology
- Abstract
Tumor-associated macrophages (TAMs) with high expression levels of the Macrophage Mannose Receptor (MMR, CD206) exhibit a strong angiogenic and immune suppressive activity. Thus, they are a highly attractive target in cancer immunotherapy, with the aim to modulate their protumoral behavior. Here, we introduce polymer nanogels as potential drug nanocarriers which were site-specifically decorated with a Nanobody (Nb) specific for the MMR. Using azide-functionalized RAFT chain transfer agents, they provide access to amphiphilic reactive ester block copolymers that self-assemble into micelles and are afterwards core-cross-linked toward fully hydrophilic nanogels with terminal azide groups on their surface. MMR-targeting Nb can site-selectively be functionalized with one single cyclooctyne moiety by maleimide-cysteine chemistry under mildly reducing conditions which enables successful chemoorthogonal conjugation to the nanogels. The resulting Nb-functionalized nanogels were highly efficient in targeting MMR-expressing cells and TAMs both in vitro and in vivo. We believe that these findings pave the road for targeted eradication or modulation of pro-tumoral MMR
high TAMs.- Published
- 2018
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31. Actinic keratosis modelling in mice: A translational study.
- Author
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Pillon A, Gomes B, Vandenberghe I, Cartron V, Cèbe P, Blanchet JC, Sibaud V, Guilbaud N, Audoly L, Lamant L, and Kruczynski A
- Subjects
- Animals, Dermoscopy, Fluorouracil therapeutic use, Humans, Immunosuppressive Agents therapeutic use, Keratosis, Actinic drug therapy, Mice, Mice, Hairless, Ultraviolet Rays, Disease Models, Animal, Keratosis, Actinic pathology, Translational Research, Biomedical
- Abstract
Background: Actinic keratoses (AK) are pre-malignant cutaneous lesions caused by prolonged exposure to ultraviolet radiation. As AKs lesions are generally accepted to be the initial lesions in a disease continuum that progresses to squamous cell carcinoma (SCC), AK lesions have to be treated. They are also the second most common reason for visits to the dermatologist. Several treatments are available but their efficacy still needs to be improved. The UV-B-induced KA lesion mouse model is used in preclinical studies to assess the efficacy of novel molecules, even though it is often more representative of advanced AK or SCC., Objectives: Here we report on a translational study, comparing the various stages of AK development in humans and in the UV-B irradiated mouse model, as well as the optimization of photograph acquisition of AK lesions on mouse skin., Methods: Human and mouse skin lesions were analysed by histology and immunohistochemistry. Mouse lesions were also assessed using a digital dermatoscope., Results: An histological and phenotypic analysis, including p53, Ki67 and CD3 expression detection, performed on human and mouse AK lesions, shows that overall AK modelling in mice is relevant in the clinical situation. Some differences are observed, such as disorganization of keratinocytes of the basal layer and a number of atypical nuclei which are more numerous in human AK, whereas much more pronounced acanthosis is observed in skin lesion in mice. Thanks to this translational study, we are able to select appropriate experimental conditions for establishing either early or advanced stage AK or an SCC model. Furthermore, we optimized photograph acquisition of AK lesions on mouse skin by using a digital dermatoscope which is also used in clinics and allows reproducible photograph acquisition for further reliable assessment of mouse lesions. Use of this camera is illustrated through a pharmacological study assessing the activity of CARAC®., Conclusion: These data demonstrate that this mouse model of UV-B-induced skin lesions is predictive for the identification of novel therapeutic treatments for both early and advanced stages of the disease.
- Published
- 2017
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32. Structure and antagonism of the receptor complex mediated by human TSLP in allergy and asthma.
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Verstraete K, Peelman F, Braun H, Lopez J, Van Rompaey D, Dansercoer A, Vandenberghe I, Pauwels K, Tavernier J, Lambrecht BN, Hammad H, De Winter H, Beyaert R, Lippens G, and Savvides SN
- Subjects
- Antibodies, Monoclonal pharmacology, Antibodies, Monoclonal, Humanized, Asthma pathology, Chemokines biosynthesis, Crystallography, X-Ray, Dendritic Cells, HEK293 Cells, Humans, Hydrophobic and Hydrophilic Interactions, Hypersensitivity pathology, Models, Molecular, Protein Structure, Secondary, Receptors, Cytokine chemistry, Receptors, Interleukin-7 chemistry, Receptors, Interleukin-7 metabolism, Recombinant Fusion Proteins metabolism, Signal Transduction, Thymic Stromal Lymphopoietin, Asthma immunology, Cytokines antagonists & inhibitors, Cytokines chemistry, Hypersensitivity immunology, Multiprotein Complexes metabolism, Receptors, Cytokine metabolism
- Abstract
The pro-inflammatory cytokine thymic stromal lymphopoietin (TSLP) is pivotal to the pathophysiology of widespread allergic diseases mediated by type 2 helper T cell (Th2) responses, including asthma and atopic dermatitis. The emergence of human TSLP as a clinical target against asthma calls for maximally harnessing its therapeutic potential via structural and mechanistic considerations. Here we employ an integrative experimental approach focusing on productive and antagonized TSLP complexes and free cytokine. We reveal how cognate receptor TSLPR allosterically activates TSLP to potentiate the recruitment of the shared interleukin 7 receptor α-chain (IL-7Rα) by leveraging the flexibility, conformational heterogeneity and electrostatics of the cytokine. We further show that the monoclonal antibody Tezepelumab partly exploits these principles to neutralize TSLP activity. Finally, we introduce a fusion protein comprising a tandem of the TSLPR and IL-7Rα extracellular domains, which harnesses the mechanistic intricacies of the TSLP-driven receptor complex to manifest high antagonistic potency.
- Published
- 2017
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33. Characterization of a novel enzyme-Starmerella bombicola lactone esterase (SBLE)-responsible for sophorolipid lactonization.
- Author
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Ciesielska K, Roelants SL, Van Bogaert IN, De Waele S, Vandenberghe I, Groeneboer S, Soetaert W, and Devreese B
- Subjects
- Amino Acid Substitution, Bacterial Proteins genetics, Bacterial Proteins isolation & purification, Carboxylic Ester Hydrolases genetics, Carboxylic Ester Hydrolases isolation & purification, Catalytic Domain, Chromatography, Liquid, Cloning, Molecular, Gene Deletion, Gene Expression, Hydrogen-Ion Concentration, Kinetics, Mass Spectrometry, Models, Molecular, Mutagenesis, Site-Directed, Mutant Proteins genetics, Mutant Proteins metabolism, Pichia genetics, Pichia metabolism, Protein Conformation, Recombinant Proteins genetics, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Saccharomycetales genetics, Temperature, Bacterial Proteins metabolism, Carboxylic Ester Hydrolases metabolism, Glycolipids metabolism, Lactones metabolism, Saccharomycetales enzymology
- Abstract
We recently discovered a novel enzyme in the exoproteome of Starmerella bombicola, which is structurally related to Candida antarctica lipase A. A knockout strain for this enzyme does no longer produce lactonic sophorolipids, prompting us to believe that this protein is the missing S. bombicola lactone esterase (SBLE). SBLE catalyzes a rather unusual reaction, i.e., an intramolecular esterification (lactonization) of acidic sophorolipids in an aqueous environment, which raised questions about its activity and mode of action. Here, we report the heterologous production of this enzyme in Pichia pastoris and its purification in a two-step strategy. Purified recombinant SBLE (rSBLE) was used to perform HPLC and liquid chromatography mass spectrometry (LCMS)-based assays with different sophorolipid mixtures. We experimentally confirmed that SBLE is able to perform ring closure of acetylated acidic sophorolipids. This substrate was selected for rSBLE kinetic studies to estimate the apparent values of K
m . We established that rSBLE displays optimal activity in the pH range of 3.5 to 6 and has an optimal temperature in the range of 20 to 50 °C. Additionally, we generated a rSBLE mutant through site-directed mutagenesis of Ser194 in the predicted active site pocket and show that this mutant is lacking the ability to lactonize sophorolipids. We therefore propose that SBLE operates via the common serine hydrolase mechanism in which the catalytic serine residue is assisted by a His/Asp pair.- Published
- 2016
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34. Discovery bioanalysis and in vivo pharmacology as an integrated process: a case study in oncology drug discovery.
- Author
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Grondin A, Pillon A, Vandenberghe I, Guilbaud N, Kruczynski A, and Gomes B
- Subjects
- Animals, Antineoplastic Agents blood, Antineoplastic Agents pharmacology, Antineoplastic Agents therapeutic use, Cell Line, Tumor, Chromatography, High Pressure Liquid methods, Female, Humans, Leukemia pathology, Mass Spectrometry methods, Mice, Antineoplastic Agents pharmacokinetics, Dried Blood Spot Testing methods, Drug Discovery methods, Drug Monitoring methods, Leukemia drug therapy
- Abstract
Background: A bioanalytical team dedicated to in vivo pharmacology was set up to accelerate the selection and characterization of compounds to be evaluated in animal models in oncology., Results: A DBS-based serial microsampling procedure was optimized from sample collection to extraction to obtain a generic procedure. UHPLC-high-resolution mass spectrometer configuration allowed for fast quantitative and qualitative analysis. Using an optimized lead compound, we show how bioanalysis supported in vivo pharmacology by generating blood and tumor exposure, drug monitoring and PK/PD data., Conclusion: This process provided unique opportunities for the characterization of drug properties, selection and assessment of compounds in animal models and to support and expedite proof-of-concept studies in oncology.
- Published
- 2016
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35. Identification and characterization of a heat-resistant protease from Serratia liquefaciens isolated from Brazilian cold raw milk.
- Author
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Machado SG, Heyndrickx M, De Block J, Devreese B, Vandenberghe I, Vanetti MC, and Van Coillie E
- Subjects
- Animals, Brazil, Cold Temperature, Pseudomonas enzymology, Serratia liquefaciens isolation & purification, Endopeptidases metabolism, Food Microbiology, Hot Temperature, Milk microbiology, Serratia liquefaciens enzymology
- Abstract
The cold storage of raw milk before heat treatment in dairy industry promotes the growth of psychrotrophic microorganisms, which are known for their ability to produce heat-resistant proteolytic enzymes. Although Pseudomonas is described as the main causative genus for high proteolytic spoilage potential in dairy products, Serratia liquefaciens secretes proteases and may be found in raw milk samples as well. However, at the present there is no information about the proteolytic spoilage potential of S. liquefaciens in milk after heat-treatment. The main aim of this research was to assess the proteolytic spoilage potential of S. liquefaciens isolated from Brazilian raw milk and to characterize the involved protease. S. liquefaciens was shown to secrete one heat-resistant spoilage metalloprotease of, approximately, 52 kDa encoded by the ser2 gene. The heat-resistance of Ser2 was similar to the aprX encoded metalloprotease produced by Pseudomonas. Although the ser2 gene was detected in all S. liquefaciens isolates tested in this study, the proteolytic activity of the isolates in milk was highly heterogeneous. Since nucleotide and deduced amino acid sequences of ser2 of all tested isolates are identical, this heterogeneity may be attributed to differences in enzyme expression levels or post-translational modifications., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
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36. F14512, a polyamine-vectorized inhibitor of topoisomerase II, exhibits a marked anti-tumor activity in ovarian cancer.
- Author
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Thibault B, Clement E, Zorza G, Meignan S, Delord JP, Couderc B, Bailly C, Narducci F, Vandenberghe I, Kruczynski A, Guilbaud N, Ferré P, and Annereau JP
- Subjects
- Animals, Apoptosis drug effects, Carcinoma, Ovarian Epithelial, Cell Line, Tumor, Female, Humans, Mice, Neoplasms, Glandular and Epithelial metabolism, Neoplasms, Glandular and Epithelial pathology, Ovarian Neoplasms metabolism, Ovarian Neoplasms pathology, Podophyllotoxin pharmacology, Antineoplastic Agents pharmacology, Biogenic Polyamines metabolism, Neoplasms, Glandular and Epithelial drug therapy, Ovarian Neoplasms drug therapy, Podophyllotoxin analogs & derivatives, Topoisomerase II Inhibitors pharmacology
- Abstract
Epithelial ovarian cancer is the fourth cause of death among cancer-bearing women and frequently associated with carboplatin resistance, underlining the need for more efficient and targeted therapies. F14512 is an epipodophylotoxin-core linked to a spermine chain which enters cells via the polyamine transport system (PTS). Here, we investigate this novel concept of vectorization in ovarian cancer. We compared the effects of etoposide and F14512 on a panel of five carboplatin-sensitive or resistant ovarian cancer models. We assessed the incorporation of F17073, a spermine-linked fluorescent probe, in these cells and in 18 clinical samples. We then showed that F14512 exhibits a high anti-proliferative and pro-apoptotic activity, particularly in cells with high levels of F17073 incorporation. Consistently, F14512 significantly inhibited tumor growth compared to etoposide, in a cisplatin-resistant A2780R subcutaneous model, at a dose of 1.25 mg/kg. In addition, ex vivo analysis indicated that 15 out of 18 patients presented a higher F17073 incorporation into tumor cells compared to normal cells. Overall, our data suggest that F14512, a targeted drug with a potent anti-tumor efficacy, constitutes a potential new therapy for highly PTS-positive and platinum-resistant ovarian cancer-bearing patients., (Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2016
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37. Recombinant Expression of Trichoderma reesei Cel61A in Pichia pastoris: Optimizing Yield and N-terminal Processing.
- Author
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Tanghe M, Danneels B, Camattari A, Glieder A, Vandenberghe I, Devreese B, Stals I, and Desmet T
- Subjects
- Amino Acid Sequence, Biomass, Cellulose chemistry, Cellulose genetics, DNA, Fungal genetics, Fermentation, Fungal Proteins genetics, Hydrolysis, Mating Factor, Mixed Function Oxygenases genetics, Molecular Sequence Data, Peptides genetics, Peptides metabolism, Polysaccharides chemistry, Saccharomyces cerevisiae metabolism, Sequence Analysis, DNA, Trichoderma genetics, Fungal Proteins biosynthesis, Mixed Function Oxygenases biosynthesis, Pichia metabolism, Trichoderma enzymology
- Abstract
The auxiliary activity family 9 (AA9, formerly GH61) harbors a recently discovered group of oxidative enzymes that boost cellulose degradation. Indeed, these lytic polysaccharide monooxygenases (LPMOs) are able to disrupt the crystalline structure of cellulose, thereby facilitating the work of hydrolytic enzymes involved in biomass degradation. Since these enzymes require an N-terminal histidine residue for activity, their recombinant production as secreted protein is not straightforward. We here report the expression optimization of Trichoderma reesei Cel61A (TrCel61A) in the host Pichia pastoris. The use of the native TrCel61A secretion signal instead of the alpha-mating factor from Saccharomyces cerevisiae was found to be crucial, not only to obtain high protein yields (>400 mg/L during fermentation) but also to enable the correct processing of the N-terminus. Furthermore, the LPMO activity of the enzyme is demonstrated here for the first time, based on its degradation profile of a cellulosic substrate.
- Published
- 2015
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38. Chromosomal rearrangements involving the NTRK1 gene in colorectal carcinoma.
- Author
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Créancier L, Vandenberghe I, Gomes B, Dejean C, Blanchet JC, Meilleroux J, Guimbaud R, Selves J, and Kruczynski A
- Subjects
- Animals, Base Sequence, Biomarkers, Tumor analysis, Carcinoma chemistry, Carcinoma pathology, Cell Line, Tumor, Colorectal Neoplasms chemistry, Colorectal Neoplasms pathology, Gene Fusion, Humans, Immunohistochemistry, Mice, Nude, Molecular Sequence Data, Nuclear Pore Complex Proteins genetics, Proto-Oncogene Proteins genetics, Receptor, trkA analysis, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Tissue Array Analysis, Tropomyosin genetics, Biomarkers, Tumor genetics, Carcinoma genetics, Colorectal Neoplasms genetics, Gene Rearrangement, Receptor, trkA genetics, Translocation, Genetic
- Abstract
Chromosomal rearrangements of the NTRK1 gene, which encodes the high affinity nerve growth factor receptor (tropomyosin related kinase, TRKA), have been observed in several epithelial cancers, such as colon cancer, papillary thyroid carcinoma or non small cell lung cancer. The various NTRK1 fusions described so far lead to constitutive activation of TRKA kinase activity and are oncogenic. We further investigated here the existence and the frequency of NTRK1 gene rearrangements in colorectal cancer. Using immunohistochemistry and quantitative reverse transcriptase PCR, we analyzed a series of human colorectal cancers. We identified two TRKA positive cases over 408, with NTRK1 chromosomal rearrangements. One of these rearrangements is a TPM3-NTRK1 fusion already observed in colon cancer, while the second one is a TPR-NTRK1 fusion never described in this type of cancer. These findings further confirm that translocations in the NTRK1 gene are recurring events in colorectal cancer, although occurring at a low frequency (around 0.5%)., (Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2015
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39. Microbial inhibition of oral epithelial wound recovery: potential role for quorum sensing molecules?
- Author
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De Ryck T, Vanlancker E, Grootaert C, Roman BI, De Coen LM, Vandenberghe I, Stevens CV, Bracke M, Van de Wiele T, and Vanhoecke B
- Abstract
Awareness of the impact of microbiota in both health and disease is growing. Using a new in vitro oral mucosa co-culture model, we recently showed a clear inhibition of epithelial wound healing in the presence of an oral microbial community. In this paper, we have used the same model in combination with specific oral microbial species to obtain a better insight into the role of the oral microbiota in wound healing. Monocultures of Klebsiella oxytoca and Lactobacillus salivarius significantly inhibited wound healing with ~20%, whereas Streptococcus mitis and S. oralis enhanced the healing process with ~15% in 24 h. Yet, neither S. oralis or S. mitis were able to counteract the inhibitory effects from K. oxytoca on wound healing. Other tested microbial species had no effect on wound healing. Apart from this species-dependency, the inhibitory effect on wound healing depended on a microbial threshold concentration. Further mechanistic experiments with K. oxytoca excluded different microbial factors and hypothesized that quorum sensing molecules might play a role in the inter-kingdom signalling during wound healing. These results are important for the development of new strategies for the management of (infected) wounds and ulcerations.
- Published
- 2015
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40. Generation of a nanobody targeting the paraflagellar rod protein of trypanosomes.
- Author
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Obishakin E, Stijlemans B, Santi-Rocca J, Vandenberghe I, Devreese B, Muldermans S, Bastin P, and Magez S
- Subjects
- Amino Acid Sequence, Animals, Camelids, New World, Flagella immunology, Immunoglobulin Heavy Chains genetics, Immunoglobulin Heavy Chains immunology, Immunoglobulin Heavy Chains therapeutic use, Molecular Sequence Data, RNA Interference, RNA, Small Interfering, Recombinant Proteins genetics, Recombinant Proteins immunology, Recombinant Proteins therapeutic use, Sequence Alignment, Single-Chain Antibodies genetics, Single-Chain Antibodies immunology, Trypanocidal Agents immunology, Trypanosoma immunology, Trypanosomiasis therapy, Antigens, Protozoan immunology, Protozoan Proteins immunology, Single-Chain Antibodies therapeutic use, Trypanocidal Agents therapeutic use, Trypanosomiasis prevention & control
- Abstract
Trypanosomes are protozoan parasites that cause diseases in humans and livestock for which no vaccines are available. Disease eradication requires sensitive diagnostic tools and efficient treatment strategies. Immunodiagnostics based on antigen detection are preferable to antibody detection because the latter cannot differentiate between active infection and cure. Classical monoclonal antibodies are inaccessible to cryptic epitopes (based on their size-150 kDa), costly to produce and require cold chain maintenance, a condition that is difficult to achieve in trypanosomiasis endemic regions, which are mostly rural. Nanobodies are recombinant, heat-stable, small-sized (15 kDa), antigen-specific, single-domain, variable fragments derived from heavy chain-only antibodies in camelids. Because of numerous advantages over classical antibodies, we investigated the use of nanobodies for the targeting of trypanosome-specific antigens and diagnostic potential. An alpaca was immunized using lysates of Trypanosoma evansi. Using phage display and bio-panning techniques, a cross-reactive nanobody (Nb392) targeting all trypanosome species and isolates tested was selected. Imunoblotting, immunofluorescence microscopy, immunoprecipitation and mass spectrometry assays were combined to identify the target recognized. Nb392 targets paraflagellar rod protein (PFR1) of T. evansi, T. brucei, T. congolense and T. vivax. Two different RNAi mutants with defective PFR assembly (PFR2RNAi and KIF9BRNAi) were used to confirm its specificity. In conclusion, using a complex protein mixture for alpaca immunization, we generated a highly specific nanobody (Nb392) that targets a conserved trypanosome protein, i.e., PFR1 in the flagella of trypanosomes. Nb392 is an excellent marker for the PFR and can be useful in the diagnosis of trypanosomiasis. In addition, as demonstrated, Nb392 can be a useful research or PFR protein isolation tool.
- Published
- 2014
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41. The proline-rich motif of the proDer p 3 allergen propeptide is crucial for protease-protease interaction.
- Author
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Dumez ME, Herman J, Campisi V, Bouaziz A, Rosu F, Luxen A, Vandenberghe I, de Pauw E, Frère JM, Matagne A, Chevigné A, and Galleni M
- Subjects
- Antigens, Dermatophagoides genetics, Antigens, Dermatophagoides metabolism, Arthropod Proteins genetics, Arthropod Proteins metabolism, Enzyme Precursors genetics, Fluorescence, Mutation genetics, Pichia growth & development, Pichia metabolism, Proline genetics, Protein Interaction Domains and Motifs, Protein Structure, Tertiary, Serine Endopeptidases genetics, Serine Endopeptidases metabolism, Spectrometry, Mass, Electrospray Ionization, Allergens chemistry, Amino Acid Motifs, Antigens, Dermatophagoides chemistry, Arthropod Proteins chemistry, Enzyme Precursors metabolism, Proline metabolism, Serine Endopeptidases chemistry
- Abstract
The majority of proteases are synthesized in an inactive form, termed zymogen, which consists of a propeptide and a protease domain. The propeptide is commonly involved in the correct folding and specific inhibition of the enzyme. The propeptide of the house dust mite allergen Der p 3, NPILPASPNAT, contains a proline-rich motif (PRM), which is unusual for a trypsin-like protease. By truncating the propeptide or replacing one or all of the prolines in the non-glycosylated zymogen with alanine(s), we demonstrated that the full-length propeptide is not required for correct folding and thermal stability and that the PRM is important for the resistance of proDer p 3 to undesired proteolysis when the protein is expressed in Pichia pastoris. Additionally, we followed the maturation time course of proDer p 3 by coupling a quenched-flow assay to mass spectrometry analysis. This approach allowed to monitor the evolution of the different species and to determine the steady-state kinetic parameters for activation of the zymogen by the major allergen Der p 1. This experiment demonstrated that prolines 5 and 8 are crucial for proDer p 3-Der p 1 interaction and for activation of the zymogen.
- Published
- 2013
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42. Human IL-34 and CSF-1 establish structurally similar extracellular assemblies with their common hematopoietic receptor.
- Author
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Felix J, Elegheert J, Gutsche I, Shkumatov AV, Wen Y, Bracke N, Pannecoucke E, Vandenberghe I, Devreese B, Svergun DI, Pauwels E, Vergauwen B, and Savvides SN
- Subjects
- Humans, Microscopy, Electron, Scattering, Small Angle, Tandem Mass Spectrometry, Interleukins chemistry, Macrophage Colony-Stimulating Factor chemistry, Models, Molecular, Multiprotein Complexes chemistry, Protein Conformation, Receptor, Macrophage Colony-Stimulating Factor chemistry
- Abstract
The discovery that hematopoietic human colony stimulating factor-1 receptor (CSF-1R) can be activated by two distinct cognate cytokines, colony stimulating factor-1 (CSF-1) and interleukin-34 (IL-34), created puzzling scenarios for the two possible signaling complexes. We here employ a hybrid structural approach based on small-angle X-ray scattering (SAXS) and negative-stain EM to reveal that bivalent binding of human IL-34 to CSF-1R leads to an extracellular assembly hallmarked by striking similarities to the CSF-1:CSF-1R complex, including homotypic receptor-receptor interactions. Thus, IL-34 and CSF-1 have evolved to exploit the geometric requirements of CSF-1R activation. Our models include N-linked oligomannose glycans derived from a systematic approach resulting in the accurate fitting of glycosylated models to the SAXS data. We further show that the C-terminal region of IL-34 is heavily glycosylated and that it can be proteolytically cleaved from the IL-34:hCSF-1R complex, providing insights into its role in the functional nonredundancy of IL-34 and CSF-1., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
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43. Proteasome inhibitors from Neoboutonia melleri.
- Author
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Long C, Beck J, Cantagrel F, Marcourt L, Vendier L, David B, Plisson F, Derguini F, Vandenberghe I, Aussagues Y, Ausseil F, Lavaud C, Sautel F, and Massiot G
- Subjects
- Cameroon, Molecular Structure, Plant Leaves chemistry, Plant Stems chemistry, Structure-Activity Relationship, Triterpenes chemistry, Euphorbiaceae chemistry, Proteasome Inhibitors, Triterpenes isolation & purification, Triterpenes pharmacology
- Abstract
Thirty new cycloartane derivatives (1-3, 5-12, 14-32) have been isolated from the leaves of Neoboutonia melleri. Their novelty stems from the loss of one of the C-4 methyl groups (1-3, 5-12, 14-25, and 32) and from the presence of an "extra" carbon atom in the side chain (1-3, 5-12, 14-20, 26-29, and 30-32). Furthermore, compound 32 possesses a rare triterpene skeleton with the cyclopropane ring fused onto C-1 and C-10, instead of C-9 and C-10. The structures were determined by spectrometric means, chemical correlations, and X-ray crystallography of derivative 1c. The substitution pattern in ring A, with a cyclopropyl ring conjugated with an α,β-unsaturated carbonyl moiety, confers to the molecule a particular reactivity, giving rise to a formal inversion of the stereochemistry of the cyclopropane ring under UV irradiation. These compounds showed an interesting level of activity on the proteasome pathway, thus motivating their evaluation as possible anticancer agents. The large number of isolated compounds permitted a structure-activity relationship analysis, which showed that the presence of the two enone functions was a requirement for the activity.
- Published
- 2012
- Full Text
- View/download PDF
44. Semisynthetic neoboutomellerone derivatives as ubiquitin-proteasome pathway inhibitors.
- Author
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Beck J, Guminski Y, Long C, Marcourt L, Derguini F, Plisson F, Grondin A, Vandenberghe I, Vispé S, Brel V, Aussagues Y, Ausseil F, Arimondo PB, Massiot G, Sautel F, and Cantagrel F
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents toxicity, Cell Line, Tumor, Euphorbiaceae chemistry, Humans, Proteasome Endopeptidase Complex metabolism, Signal Transduction drug effects, Triterpenes chemistry, Triterpenes toxicity, Ubiquitin metabolism, Antineoplastic Agents chemical synthesis, Biological Products chemistry, Proteasome Inhibitors, Triterpenes chemical synthesis, Ubiquitin antagonists & inhibitors
- Abstract
The interesting pharmacological properties of neoboutomellerones 1 and 2 were the basis for the assembly of a small library of analogues consisting of natural products isolated from the plant Neoboutonia melleri and of semisynthetic derivatives. As the two enone systems (C23-C24a and C1-C3) and the two hydroxyls groups (C22 and C26) of neoboutomellerones are required for activity, modifications were focused on these functional groups. Biological evaluation by using a cellular assay for proteasome activity provided clues regarding the mechanism of action of these natural products and synthetic derivatives. Certain neoboutomellerone derivatives inhibited the proliferation of human WM-266-4 melanoma tumor cells at submicromolar concentration and warrant evaluation as anticancer agents., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
45. Melanoma chemotherapy leads to the selection of ABCB5-expressing cells.
- Author
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Chartrain M, Riond J, Stennevin A, Vandenberghe I, Gomes B, Lamant L, Meyer N, Gairin JE, Guilbaud N, and Annereau JP
- Subjects
- ATP Binding Cassette Transporter, Subfamily B, ATP Binding Cassette Transporter, Subfamily B, Member 1 metabolism, Animals, Antineoplastic Agents pharmacology, Antineoplastic Agents therapeutic use, Cell Line, Tumor, Cell Membrane metabolism, Cell Survival drug effects, Dacarbazine pharmacology, Dacarbazine therapeutic use, Female, Gene Expression Regulation, Neoplastic, Humans, Mice, Mice, Nude, Neoplasm, Residual, Xenograft Model Antitumor Assays, ATP Binding Cassette Transporter, Subfamily B, Member 1 genetics, Melanoma drug therapy, Melanoma genetics, Skin Neoplasms drug therapy, Skin Neoplasms genetics
- Abstract
Metastatic melanoma is the most aggressive skin cancer. Recently, phenotypically distinct subpopulations of tumor cells were identified. Among them, ABCB5-expressing cells were proposed to display an enhanced tumorigenicity with stem cell-like properties. In addition, ABCB5(+) cells are thought to participate to chemoresistance through a potential efflux function of ABCB5. Nevertheless, the fate of these cells upon drugs that are used in melanoma chemotherapy remains to be clarified. Here we explored the effect of anti-melanoma treatments on the ABCB5-expressing cells. Using a melanoma xenograft model (WM266-4), we observed in vivo that ABCB5-expressing cells are enriched after a temozolomide treatment that induces a significant tumor regression. These results were further confirmed in a preliminary study conducted on clinical samples from patients that received dacarbazine. In vitro, we showed that ABCB5-expressing cells selectively survive when exposed to dacarbazine, the reference treatment of metastatic melanoma, but also to vemurafenib, a new inhibitor of the mutated kinase V600E BRAF and other various chemotherapeutic drugs. Our results show that anti-melanoma chemotherapy might participate to the chemoresistance acquisition by selecting tumor cell subpopulations expressing ABCB5. This is of particular importance in understanding the relapses observed after anti-melanoma treatments and reinforces the interest of ABCB5 and ABCB5-expressing cells as potential therapeutic targets in melanoma.
- Published
- 2012
- Full Text
- View/download PDF
46. Gastric epithelial cell death caused by Helicobacter suis and Helicobacter pylori γ-glutamyl transpeptidase is mainly glutathione degradation-dependent.
- Author
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Flahou B, Haesebrouck F, Chiers K, Van Deun K, De Smet L, Devreese B, Vandenberghe I, Favoreel H, Smet A, Pasmans F, D'Herde K, and Ducatelle R
- Subjects
- Amino Acid Sequence, Bacterial Proteins metabolism, Cell Death, Cell Line, Tumor, Enzyme Activation, Enzyme Assays, Escherichia coli genetics, Escherichia coli metabolism, Flow Cytometry, Gastric Mucosa metabolism, Helicobacter drug effects, Helicobacter enzymology, Helicobacter genetics, Humans, Hydrogen Peroxide metabolism, Isoxazoles pharmacology, Lipid Peroxidation, Membrane Potential, Mitochondrial, Molecular Sequence Data, Recombinant Proteins metabolism, Stomach microbiology, gamma-Glutamyltransferase antagonists & inhibitors, gamma-Glutamyltransferase isolation & purification, Epithelial Cells microbiology, Glutathione metabolism, Helicobacter pathogenicity, Helicobacter Infections microbiology, gamma-Glutamyltransferase metabolism
- Abstract
Helicobacter (H.) suis is the most prevalent non-H. pylori Helicobacter species colonizing the stomach of humans suffering from gastric disease. In the present study, we aimed to unravel the mechanism used by H. suis to induce gastric epithelial cell damage. H. suis lysate induced mainly apoptotic death of human gastric epithelial cells. Inhibition of γ-glutamyl transpeptidase (GGT) activity present in H. suis lysate and incubation of AGS cells with purified native and recombinant H. suis GGT showed that this enzyme was partly responsible for the observed apoptosis. Supplementation of H. suis or H. pylori GGT-treated cells with glutathione strongly enhanced the harmful effect of both enzymes and resulted in the induction of oncosis/necrosis, demonstrating that H. suis and H. pylori GGT-mediated degradation of glutathione and the resulting formation of glutathione degradation products play a direct and active role in the induction of gastric epithelial cell death. This was preceded by an increase of extracellular H(2)O(2) concentrations, generated in a cell-independent manner and causing lipid peroxidation. In conclusion, H. suis and H. pylori GGT-mediated generation of pro-oxidant glutathione degradation products brings on cell damage and causes apoptosis or necrosis, dependent on the amount of extracellular glutathione available as a GGT substrate., (© 2011 Blackwell Publishing Ltd.)
- Published
- 2011
- Full Text
- View/download PDF
47. Four new carvotanacetone derivatives from Sphaeranthus ukambensis, inhibitors of the ubiquitin-proteasome pathway.
- Author
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Pouny I, Vispé S, Marcourt L, Long C, Vandenberghe I, Aussagues Y, Raux R, Chalo Mutiso PB, Massiot G, and Sautel F
- Subjects
- Cell Line, Tumor, Cell Proliferation drug effects, Humans, Kenya, Plant Components, Aerial chemistry, Terpenes chemistry, Terpenes isolation & purification, Asteraceae chemistry, Plant Extracts chemistry, Protease Inhibitors pharmacology, Proteasome Endopeptidase Complex metabolism, Terpenes pharmacology, Ubiquitin metabolism
- Abstract
Six carvotanacetone derivatives (1- 6), amongst which four new compounds (1- 4), were isolated from the aerial parts of Sphaeranthus ukambensis Vatke & O. Hoffm. The structures of the molecules were elucidated by complementary spectroscopic methods, and their biological properties were investigated using human DLD-1 colon cancer cells engineered to stably express a 4 ubiquitin-luciferase (4 Ub-Luc) reporter protein. Five of the isolated carvotanacetone derivatives (2- 6) were found to inhibit the proliferation of the colon cancer cells and interfere with the ubiquitin-proteasome pathway, with potencies in a micromolar range., (© Georg Thieme Verlag KG Stuttgart · New York.)
- Published
- 2011
- Full Text
- View/download PDF
48. Preclinical activity of F14512, designed to target tumors expressing an active polyamine transport system.
- Author
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Kruczynski A, Vandenberghe I, Pillon A, Pesnel S, Goetsch L, Barret JM, Guminski Y, Le Pape A, Imbert T, Bailly C, and Guilbaud N
- Subjects
- Administration, Oral, Animals, Antineoplastic Agents administration & dosage, Antineoplastic Agents chemistry, Biological Transport drug effects, Cell Death drug effects, Cell Line, Tumor, Flow Cytometry, Fluorescence, Humans, Immunohistochemistry, Mice, Podophyllotoxin chemistry, Podophyllotoxin pharmacology, Spermine metabolism, Antineoplastic Agents pharmacology, Podophyllotoxin analogs & derivatives, Polyamines metabolism, Xenograft Model Antitumor Assays
- Abstract
We have exploited the polyamine transport system (PTS) to deliver selectively a spermine-drug conjugate, F14512 to cancer cells. This study was aimed to define F14512 anticancer efficacy against tumor models and to investigate whether fluorophor-labeled polyamine probes could be used to identify tumors expressing a highly active PTS and that might be sensitive to F14512 treatments. Eighteen tumor models were used to assess F14512 antitumor activity. Cellular uptake of spermine-based fluorescent probes was measured by flow cytometry in cells sampled from tumor xenografts by needle biopsy. The accumulation of the fluorescent probe within B16 tumors in vivo was assessed using infrared fluorescence imaging. This study has provided evidence of a major antitumor activity for F14512. Significant responses were obtained in 67% of the tumor models evaluated, with a high level of activity recorded in 33% of the responsive models. Complete tumor regressions were observed after i.v., i.p. or oral administrations of F14512 and its antitumor activity was demonstrated over a range of 2-5 dose levels, providing evidence of its good tolerance. The level of cellular fluorescence emitted by the fluorescent probes was higher in cells sampled from tumors sensitive to F14512 treatments than from F14512-refractory tumors. We suggest that these probes could be used to identify tumors expressing a highly active PTS and guide the selection of patients that might be treated with F14512. These results emphasize the preclinical interest of this novel molecule and support its further clinical development.
- Published
- 2011
- Full Text
- View/download PDF
49. Isolation and characterization of SAP and CRP, two pentraxins from Pangasianodon (Pangasius) hypophthalmus.
- Author
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Huong Giang DT, Van Driessche E, Vandenberghe I, Devreese B, and Beeckmans S
- Subjects
- Agglutination, Amino Acid Sequence, Animals, Bacteria metabolism, Blotting, Western, C-Reactive Protein chemistry, C-Reactive Protein isolation & purification, Chromatography, Gel, Cross Reactions, Electrophoresis, Polyacrylamide Gel, Erythrocytes metabolism, Molecular Sequence Data, Rabbits, Sequence Alignment, Serum Amyloid P-Component chemistry, Serum Amyloid P-Component isolation & purification, Spectrum Analysis, C-Reactive Protein genetics, C-Reactive Protein metabolism, Catfishes genetics, Catfishes metabolism, Hypothalamus metabolism, Serum Amyloid P-Component genetics, Serum Amyloid P-Component metabolism
- Abstract
From the serum of Pangasianodon hypophthalmus, two proteins were isolated by affinity chromatography on Sepharose and phosphorylcholine-Sepharose. Their binding on the affinity matrices critically depends on the presence of Ca2+ ions. N-terminal sequencing and sequencing of internal tryptic peptides identified the proteins as pentraxins and from their binding properties they are identified as SAP (serum amyloid P component) and CRP (C-reactive protein). Per ml serum, 36 microg SAP and 56 microg CRP was purified. Upon gel filtration, both the SAP and CRP elute as trimers of respectively 24 kDa and 28 kDa subunits. Both proteins are devoid of inter-chain disulfide bonds. Both SAP and CRP are glycosylated and agglutinate rabbit erythrocytes and pathogenic bacteria Edwardsiella ictaluri and Aeromonas hydrophila, but not Micrococcus lysodeikticus or Escherichia coli. Haemagglutination of SAP and CRP is inhibited by galactose (MIC = 1 mM) and by phosphorylcholine (MIC = 1-2 mM), respectively. Circular dichroism studies revealed that antiparallel beta-pleated sheets are dominating the secondary structure. Upon removing the Ca(2+) ions by EDTA, slight structural changes are observed by CD spectroscopy in the near-UV region. Immunodiffusion shows that P. hypophthalmus SAP and CRP do not cross-react., (2010 Elsevier Ltd. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
50. Granzyme K displays highly restricted substrate specificity that only partially overlaps with granzyme A.
- Author
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Bovenschen N, Quadir R, van den Berg AL, Brenkman AB, Vandenberghe I, Devreese B, Joore J, and Kummer JA
- Subjects
- Cell Death physiology, Chromosomes, Human genetics, Granzymes genetics, Humans, Jurkat Cells, Kinetics, Proteomics methods, Substrate Specificity physiology, Chromosomes, Human metabolism, DNA Breaks, Single-Stranded, Granzymes metabolism
- Abstract
Granzymes are serine proteases stored in cytolytic granules of cytotoxic lymphocytes that eliminate virus-infected and tumor cells. Little is known about the molecular mechanism and function of granzyme (Gr)K. GrK is similar to GrA in that they are the only granzymes that display tryptase-like activity. Both granzymes induce cell death by single-stranded nicking of the chromosomal DNA by cleaving the same components of the endoplasmic reticulum-associated SET complex. Therefore, GrK may provide a backup and failsafe mechanism for GrA with redundant specificity. In the present study, we addressed the question of whether GrK displays identical substrate specificity as GrA. In peptide- and protease-proteomic screens, GrK and GrA displayed highly restricted substrate specificities that overlapped only partially. Whereas GrK and GrA cleave SET with similar efficiencies likely at the same sites, both granzymes cleaved the pre-mRNA-binding protein heterogeneous ribonuclear protein K with different kinetics at distinct sites. GrK was markedly more efficient in cleaving heterogeneous ribonuclear protein K than GrA. GrK, but not GrA, cleaved the microtubule network protein beta-tubulin after two distinct Arg residues. Neither GrK cleavage sites in beta-tubulin nor a peptide-based proteomic screen revealed a clear GrK consensus sequence around the P1 residue, suggesting that GrK specificity depends on electrostatic interactions between exosites of the substrate and the enzyme. We hypothesize that GrK not only constitutes a redundant functional backup mechanism that assists GrA-induced cell death but that it also displays a unique function by cleaving its own specific substrates.
- Published
- 2009
- Full Text
- View/download PDF
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