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This research introduces a fractional high-order sliding mode control (FHOSMC) method that utilises an inverse integral fractional order, 0<β<1, as the high order on the FHOSMC reaching law, exhibiting a novel contribution in the related field of study. The application of the proposed approach into a bioreactor system via diffeomorphism operations demonstrates a notable improvement in the management of the bioreactor dynamics versus classic controllers. The numerical findings highlight an improved precision in tracking reference signals and an enhanced plant stability compared to proportional–integral–derivative (PID) controller implementations within challenging disturbance scenarios. The FHOSMC effectively maintains the biomass concentration at desired levels, reducing the wear of the system as well as implementation expenses. Furthermore, the theoretical analysis of the convergence within time indicates substantial potential for further enhancements. Subsequent studies might focus on extending this control approach to bioreactor systems that integrate sensor technologies and the formulation of adaptive algorithms for real-time adjustments of β-type fractional-orders.