56 results on '"Vladimir K. Plakunov"'
Search Results
2. Epinephrine Affects Ribosomes, Cell Division, and Catabolic Processes in Micrococcus luteus Skin Strain C01: Revelation of the Conditionally Extensive Hormone Effect Using Orbitrap Mass Spectrometry and Proteomic Analysis
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Andrei V. Gannesen, Rustam H. Ziganshin, Maria A. Ovcharova, Ekaterina D. Nevolina, Alena I. Klimko, Sergey V. Martyanov, and Vladimir K. Plakunov
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Micrococcus luteus ,skin microbiota ,microbial endocrinology ,Orbitrap mass spectrometry ,biofilms ,planktonic cultures ,Biology (General) ,QH301-705.5 - Abstract
In the current study, extensive Orbitrap mass spectrometry analysis was conducted for skin strain Micrococcus luteus C01 planktonic cultures and biofilms after 24 h and 72 h of incubation either in the presence of epinephrine or without any implementations. The investigation revealed the complex and conditionally extensive effect of epinephrine at concentrations closer to normal blood plasma concentrations on both planktonic cultures and biofilms of skin strain M. luteus C01. The concentrations of hundreds of proteins changed during the shift from planktonic growth mode to biofilm and hundreds of proteins were downregulated or upregulated in the presence of epinephrine. Ribosomal, TCA, and cell division proteins appear to be the most altered in their amounts in the presence of the hormone. Potentially, the regulatory mechanism of this process is connected with c-di-GMP and histidine kinases, which were affected by epinephrine in different samples. The phenomenon of epinephrine-based biofilm regulation in M. luteus C01 has wide implications for microbial endocrinology and other research areas.
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- 2023
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3. Epinephrine extensively changes the biofilm matrix composition in Micrococcus luteus C01 isolated from human skin
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Andrei V. Gannesen, Rustam H. Ziganshin, Evelina L. Zdorovenko, Alena I. Klimko, Elena A. Ianutsevich, Olga A. Danilova, Vera M. Tereshina, Maxim V. Gorbachevskii, Maria A. Ovcharova, Ekaterina D. Nevolina, Sergey V. Martyanov, Alexander S. Shashkov, Andrey S. Dmitrenok, Andrei A. Novikov, Marina V. Zhurina, Ekaterina A. Botchkova, Philipp V. Toukach, and Vladimir K. Plakunov
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Micrococcus luteus ,epinephrine ,biofilms ,biofilm matrix ,human skin microbiota ,host–microbiota interactions ,Microbiology ,QR1-502 - Abstract
The importance of the impact of human hormones on commensal microbiota and microbial biofilms is established in lots of studies. In the present investigation, we continued and extended the research of epinephrine effects on the skin commensal Micrococcus luteus C01 and its biofilms, and also the matrix changes during the biofilm growth. Epinephrine in concentration 4.9 × 10–9 M which is close to normal blood plasma level increased the amount of polysaccharides and extracellular DNA in the matrix, changed extensively its protein, lipid and polysaccharide composition. The Ef-Tu factor was one of the most abundant proteins in the matrix and its amount increased in the presence of the hormone. One of the glucose-mannose polysaccharide was absent in the matrix in presence of epinephrine after 24 h of incubation. The matrix phospholipids were also eradicated by the addition of the hormone. Hence, epinephrine has a great impact on the M. luteus biofilms and their matrix composition, and this fact opens wide perspectives for the future research.
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- 2022
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4. C-Type Natriuretic Peptide Acts as a Microorganism-Activated Regulator of the Skin Commensals Staphylococcus epidermidis and Cutibacterium acnes in Dual-Species Biofilms
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Maria A. Ovcharova, Mikhail I. Schelkunov, Olga V. Geras’kina, Nadezhda E. Makarova, Marina V. Sukhacheva, Sergey V. Martyanov, Ekaterina D. Nevolina, Marina V. Zhurina, Alexey V. Feofanov, Ekaterina A. Botchkova, Vladimir K. Plakunov, and Andrei V. Gannesen
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Staphylococcus epidermidis ,Cutibacterium acnes ,biofilms ,multispecies biofilms ,skin microbiota ,C-type natriuretic peptide ,Biology (General) ,QH301-705.5 - Abstract
The effect of C-type natriuretic peptide in a concentration closer to the normal level in human blood plasma was studied on the mono-species and dual-species biofilms of the skin commensal bacteria Cutibacterium acnes HL043PA2 and Staphylococcus epidermidis ATCC14990. Despite the marginal effect of the hormone on cutibacteria in mono-species biofilms, the presence of staphylococci in the community resulted in a global shift of the CNP effect, which appeared to increase the competitive properties of C. acnes, its proliferation and the metabolic activity of the community. S. epidermidis was mostly inhibited in the presence of CNP. Both bacteria had a significant impact on the gene expression levels revealed by RNA-seq. CNP did not affect the gene expression levels in mono-species cutibacterial biofilms; however, in the presence of staphylococci, five genes were differentially expressed in the presence of the hormone, including two ribosomal proteins and metal ABC transporter permease. In staphylococci, the Na-translocating system protein MpsB NADH-quinone oxidoreductase subunit L was downregulated in the dual-species biofilms in the presence of CNP, while in mono-species biofilms, two proteins of unknown function were downregulated. Hypothetically, at least one of the CNP mechanisms of action is via the competition for zinc, at least on cutibacteria.
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- 2023
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5. Composition of the Biofilm Matrix of Cutibacterium acnes Acneic Strain RT5
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Andrei V. Gannesen, Evelina L. Zdorovenko, Ekaterina A. Botchkova, Julie Hardouin, Sebastien Massier, Dmitry S. Kopitsyn, Maxim V. Gorbachevskii, Alexandra A. Kadykova, Alexander S. Shashkov, Marina V. Zhurina, Alexander I. Netrusov, Yuriy A. Knirel, Vladimir K. Plakunov, and Marc G. J. Feuilloley
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Cutibacterium acnes ,biofilms ,biofilm matrix ,Orbitrap mass spectrometry ,nuclear magnetic resonance ,surface-enhanced Raman spectroscopy ,Microbiology ,QR1-502 - Abstract
In skin, Cutibacterium acnes (former Propionibacterium acnes) can behave as an opportunistic pathogen, depending on the strain and environmental conditions. Acneic strains of C. acnes form biofilms inside skin–gland hollows, inducing inflammation and skin disorders. The essential exogenous products of C. acnes accumulate in the extracellular matrix of the biofilm, conferring essential bacterial functions to this structure. However, little is known about the actual composition of the biofilm matrix of C. acnes. Here, we developed a new technique for the extraction of the biofilm matrix of Gram-positive bacteria without the use of chemical or enzymatic digestion, known to be a source of artifacts. Our method is based on the physical separation of the cells and matrix of sonicated biofilms by ultracentrifugation through a CsCl gradient. Biofilms were grown on the surface of cellulose acetate filters, and the biomass was collected without contamination by the growth medium. The biofilm matrix of the acneic C. acnes RT5 strain appears to consist mainly of polysaccharides. The following is the ratio of the main matrix components: 62.6% polysaccharides, 9.6% proteins, 4.0% DNA, and 23.8% other compounds (porphyrins precursors and other). The chemical structure of the major polysaccharide was determined using a nuclear magnetic resonance technique, the formula being →6)-α-D-Galp-(1→4)-β-D-ManpNAc3NAcA-(1→6)-α-D-Glcp-(1→4)-β-D-ManpNAc3NAcA-(1→3)-β-GalpNAc-(1→. We detected 447 proteins in the matrix, of which the most abundant were the chaperonin GroL, the elongation factors EF-Tu and EF-G, several enzymes of glycolysis, and proteins of unknown function. The matrix also contained more than 20 hydrolases of various substrata, pathogenicity factors, and many intracellular proteins and enzymes. We also performed surface-enhanced Raman spectroscopy analysis of the C. acnes RT5 matrix for the first time, providing the surface-enhanced Raman scattering (SERS) profiles of the C. acnes RT5 biofilm matrix and biofilm biomass. The difference between the matrix and biofilm biomass spectra showed successful matrix extraction rather than simply the presence of cell debris after sonication. These data show the complexity of the biofilm matrix composition and should be essential for the development of new anti-C. acnes biofilms and potential antibiofilm drugs.
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- 2019
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6. Regulation of Monospecies and Mixed Biofilms Formation of Skin Staphylococcus aureus and Cutibacterium acnes by Human Natriuretic Peptides
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Andrei Vladislavovich Gannesen, Olivier Lesouhaitier, Pierre-Jean Racine, Magalie Barreau, Alexander I. Netrusov, Vladimir K. Plakunov, and Marc G. J. Feuilloley
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Staphylococcus aureus ,Cutibacterium acnes ,multispecies biofilms ,natriuretic peptides ,temperature dependent regulation ,human skin–microbiome interactions ,Microbiology ,QR1-502 - Abstract
Staphylococcus aureus and Cutibacterium acnes are common representatives of the human skin microbiome. However, when these bacteria are organized in biofilm, they could be involved in several skin disorders such as acne or psoriasis. They inhabit in hollows of hair follicles and skin glands, where they form biofilms. There, they are continuously exposed to human hormones, including human natriuretic peptides (NUPs). We first observed that the atrial natriuretic peptide (ANP) and the C-type natriuretic peptide (CNP) have a strong effect S. aureus and C. acnes biofilm formation on the skin. These effects are significantly dependent on the aero-anaerobic conditions and temperature. We also show that both ANP and CNP increased competitive advantages of C. acnes toward S. aureus in mixed biofilm. Because of their temperature-dependent effects, NUPs appear to act as a thermostat, allowing the skin to modulate bacterial development in normal and inflammatory conditions. This is an important step toward understanding how human neuroendocrine systems can regulate the cutaneous microbial community and should be important for applications in fundamental sciences, medicine, dermatology, and cosmetology.
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- 2018
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7. Phylogenetic Constitution and Survival of Microbial Biofilms Formed on the Surface of Polyethylene Composites Protected with Polyguanidine Biocides
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Marina V. Zhurina, Kirill I. Bogdanov, Dmitry I. Mendeleev, Vsevolod A. Tikhomirov, Elizaveta M. Pleshko, Andrei V. Gannesen, Victor V. Kurenkov, Victor A. Gerasin, and Vladimir K. Plakunov
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Materials Chemistry ,Surfaces and Interfaces ,polyethylene ,biofilms ,composite materials ,biofouling of polyethylene ,multispecies biofilms ,reconstruction of multispecies biofilms ,biocidal fillers-polyguanidines ,antibiofilm effect of polyguanidines ,Surfaces, Coatings and Films - Abstract
A series of biocide-containing polyethylene composites were obtained using novel guanidine-containing copolymers immobilized on an inert mineral carrier. Multispecies microbial communities were isolated from the surface of polyethylene samples either incubated or found in the environment, and their taxonomic composition was determined. Biofilms reconstructed using microorganisms obtained from different ecotopes were shown to intensively foul polyethylene surfaces. The presence of polyguanidine biocide suppressed the growth and survival of both binary and multispecies biofilms, with a cumulative effect during long-term incubation. When microorganisms were co-cultivated in binary biofilms, the phenomenon of a decrease in biocide effectiveness was demonstrated. This protective effect is potentially based on cooperative interactions inside the binary biofilm community. Scanning electron microscopy showed a pronounced difference in the architecture of reconstructed biofilms incubated in the presence of biocide in comparison to control samples, where biocide suppressed the formation of dense and well-organized three-dimensional structures. Biofilm disruption by immobilized biocides occurred primarily during the later stages of biofilm formation, probably caused by polycation interaction with their negatively charged extracellular components.
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- 2023
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8. Inhibitory Effect of Norepinephrine on Biofilm Growth of the Human Skin Commensal Kytococcus schroeteri H01
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N. D. Danilova, Olga Geraskina, Vladimir K. Plakunov, E. V. Diuvenji, Alexey V. Feofanov, and A. V. Gannesen
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Chemistry ,Biofilm ,Human skin ,Applied Microbiology and Biotechnology ,Microbiology ,Norepinephrine (medication) ,Kytococcus schroeteri ,medicine ,Metabolic activity ,Inhibitory effect ,Incubation ,Biofilm growth ,medicine.drug - Abstract
This is the first report on the effect of norepinephrine on biofilms and planktonic cultures of a human skin commensal Kytococcus schroeteri H01. A dose-depending inhibitory effect of norepinephrine on K. schroeteri was shown after 24 and 72 h of incubation on PTFE cubes. The most pronounced effect was observed at 3.5 × 10–7 M norepinephrine after 24 h of incubation (71 ± 13% of the control) and at 3.5 × 10–6 M after 72 h (78 ± 10% of the control). Biofilms formed on glass in the presence of norepinephrine were thinner and flatter than in the controls. No significant effect of norepinephrine on metabolic activity of the cells in biofilms formed on PTFE cubes was revealed. Norepinephrine probably affects initial stages of the switching to biofilm lifestyle and matrix synthesis in K. schroeteri H01.
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- 2021
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9. Biocorrosion of Synthetic Plastics: Degradation Mechanisms and Methods of Protection
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S. V. Mart’yanov, Vladimir K. Plakunov, M. V. Zhurina, and A. V. Gannesen
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0303 health sciences ,03 medical and health sciences ,030306 microbiology ,Multispecies biofilms ,Chemistry ,Microbial enzymes ,Industrial scale ,Degradation (geology) ,Biochemical engineering ,Biodegradation ,Applied Microbiology and Biotechnology ,Microbiology ,030304 developmental biology - Abstract
The mechanisms of microbial action on synthetic plastics are analyzed, with the focus on the most widespread polymers produced on an industrial scale. The effect of microbial enzymes on plastic biodegradation and the role of multispecies biofilms in biocorrosion are considered. The main approaches for protection of synthetic plastics from microbially caused damage are discussed.
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- 2020
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10. Specific Features of Formation of Multispecies Microbial Biofilms on Polyethylene Surface
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S. V. Mart’yanov, A. Yu. Kallistova, A. E. Panyushkina, V. A. Gerasin, N. A. Sivov, V. A. Tikhomirov, Vladimir K. Plakunov, A. V. Gannesen, and M. V. Zhurina
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0303 health sciences ,biology ,030306 microbiology ,Chemistry ,Pseudomonas aeruginosa ,Microorganism ,Biofilm ,Yarrowia ,Adhesion ,biology.organism_classification ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,Low-density polyethylene ,medicine ,Chromobacterium violaceum ,Bacteria ,030304 developmental biology - Abstract
Patterns of formation of three-species biofilms on the surface of an LDPE-based composite material were studied using a mixture of pure planktonic cultures of microorganisms capable of degrading this polymer. This is the first report of the role of the ascomycete Yarrowia lipolytica as a primary colonizer in this system, forming aggregates with gram-negative bacteria Pseudomonas aeruginosa or Chromobacterium violaceum. Addition of biocidal compounds of the guanidine family to LDPE as a component of the filler was shown to result in selective suppression of biofilm growth of some microorganisms, while it had no effect on the initial stages of adhesion and on planktonic growth of the cultures. Gram-positive bacteria of the genus Kocuria exhibited the highest sensitivity to these biocidal agents.
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- 2020
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11. Effect of β-Estradiol on Mono- and Mixed-Species Biofilms of Human Commensal Bacteria Lactobacillus paracasei AK508 and Micrococcus luteus C01 on Different Model Surfaces
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Anastasia A. Kiseleva, Tatiana V. Solovyeva, Maria A. Ovcharova, Olga V. Geras’kina, Sergey V. Mart’yanov, Tatiana A. Cherdyntseva, Natalya D. Danilova, Marina V. Zhurina, Ekaterina A. Botchkova, Alexey V. Feofanov, Vladimir K. Plakunov, and Andrei V. Gannesen
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Micrococcus luteus ,Lactobacillus paracasei ,biofilms ,mixed-species biofilms ,estradiol ,hormone ,ethanol ,skin microbiota ,human microbiota ,Materials Chemistry ,Surfaces and Interfaces ,Surfaces, Coatings and Films - Abstract
The impact of steroid hormones, and particularly estradiol, on human microbiota could be recognized as a substantial part of human-microbiota interactions. However, an area that remains poorly investigated is that of the skin and vaginal microbial communities and biofilms, which contain non-pathogenic bacteria of phyla Firmicutes and Actinobacteria, especially probiotic bacteria of the genus Lactobacillus and the widespread, safe skin genus, Micrococcus. Experiments with Lactobacillus paracasei AK508 and Micrococcus luteus C01 biofilms on PTFE cubes showed dose-dependent effects of estradiol at concentrations of 0.22 nM and 22 nM. The hormone mostly inhibits L. paracasei growth and stimulates M. luteus. The presented studies of colony-forming unit (CFU) amountsand cell aggregation in biofilms on glass fiber filters showed the same general tendencies. Estradiol generally increased the aggregation of cells in monospecies communities and potentially changed the synthesis of antibacterial metabolites in L. paracasei. The balance between two bacteria in mixed-species biofilms depended on the initial adhesion stage, and when this stage was reduced, micrococci were more resistant to the antagonistic action of L. paracasei. Moreover, in mixed-species biofilms, the effect of estradiol on lactobacilli altered from inhibition to stimulation, potentially due to the presence of M. luteus. At the same time, ethanol as a solvent for estradiol at the concentration 0.6% acted mostly as an antagonist of the hormone and had an opposite effect on bacteria; nevertheless, the overlapping of ethanol and estradiol effects was shown to be minimal. The data obtained prove the complexity of microbial interactions and the regulatory effect of estradiol on commensal bacteria biofilms.
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- 2022
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12. Express Method for Determining the Relation between Polyethylene Biocorrosion by Chromobacterium violaceum Biofilms and Their Ability to Form Extracellular Matrix
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S. V. Mart’yanov, A. V. Gannesen, M. V. Zhurina, and Vladimir K. Plakunov
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chemistry.chemical_classification ,0303 health sciences ,biology ,030306 microbiology ,Biofilm ,Polymer ,Polyethylene ,Matrix (biology) ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Extracellular matrix ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Extracellular ,Biophysics ,Scattered light ,Chromobacterium violaceum ,030304 developmental biology - Abstract
An express method for measuring biocorrosion of the surface of polyethylene by mono- and multi-species microbial biofilms was developed. The method involves massive inoculation of polyethylene samples with pure microbial cultures or their mixtures, with subsequent incubation for 5‒7 days providing for the biofilm development. The damage to the surface of polyethylene was determined both by the optical method described in this paper and based on measuring the intensity of scattered light and by the standard method using a profilometer. Both methods revealed a direct correlation of the results and may be recommended for practical measurement of the initial stages of biocorrosion of the polyethylene surface. The biocorrosion level was found to depend primarily upon the number of viable microbial cells in the biofilm, rather than upon accumulation of the extracellular polymer matrix.
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- 2020
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13. Antibiofilm Agents: Therminological Ambiguity and Strategy for Search
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M. V. Zhurina, Vladimir K. Plakunov, A. V. Gannesen, Yu. A. Nikolaev, and S. V. Mart’yanov
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0303 health sciences ,030306 microbiology ,business.industry ,Computer science ,media_common.quotation_subject ,Modern literature ,Ambiguity ,Machine learning ,computer.software_genre ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,Artificial intelligence ,business ,computer ,Selection (genetic algorithm) ,030304 developmental biology ,media_common ,Subdivision - Abstract
The concepts on the nature of antibiofilm agents and strategies for their search, which exist in modern literature, are analyzed. A new classification of these compounds is proposed, with subdivision into four major classes depending on their mechanism of action. An advanced system of screening for the pro- and antibiofilm agents is proposed, which will make it possible to improve the efficiency of selection and to expand the spectrum of these compounds.
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- 2019
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14. Role of the Extracellular Polymer Matrix in Azithromycin Protection of Chromobacterium violaceum Biofilms
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Vladimir K. Plakunov, M. V. Zhurina, and Yu. A. Nikolaev
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chemistry.chemical_classification ,biology ,Biofilm ,Polymer ,Matrix (biology) ,Azithromycin ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,chemistry ,medicine ,Extracellular ,Chromobacterium violaceum ,medicine.drug - Published
- 2019
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15. A New Approach to Detection of the Protective Effect of Escherichia coli on Gram-Positive Bacteria in Binary Biofilms in the Presence of Antibiotics
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D. S. Chemaeva, Vladimir K. Plakunov, A. V. Gannesen, M. V. Zhurina, and Yu. A. Nikolaev
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0303 health sciences ,biology ,030306 microbiology ,Chemistry ,medicine.drug_class ,Gram-positive bacteria ,Antibiotics ,Biofilm ,Micrococcus ,Kanamycin ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Kocuria rhizophila ,03 medical and health sciences ,medicine ,Escherichia coli ,Bacteria ,030304 developmental biology ,medicine.drug - Abstract
Binary biofilms containing gram-positive bacteria Micrococcus thailandicus HB or Kocuria rhizophila strain 4A-2G and gram-negative bacteria Escherichia coli strain K-12 or strain ET12567 pRAG56 were obtained. Strain E. coli ET12567 contained a plasmid encoding aminoglycoside phosphotransferase, the enzyme which inactivates kanamycin. A new kinetic approach was developed for selective detection of metabolically active gram-positive bacteria in binary biofilms with E. coli, based on the differences in reduction rate of the electron acceptor, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT). It was found that the studied E. coli strains did not exert a protective effect upon the action of antibiotics vancomycin and oxacillin on gram-positive bacteria in the binary biofilms under formation. However, a protective effect was found in the case of preformed binary biofilms: the growth of gram-positive bacteria in binary biofilms was observed at the concentrations of antibiotics oxacillin and kanamycin, which almost completely suppressed growth in the mono-species biofilms of these gram-positive bacteria. The presence of a protective effect was confirmed by several methods (dynamics of MTT reduction, densitometric evaluation of biofilm staining, measurement of the optical density of MTT extracts, and CFU enumeration).
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- 2019
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16. A Novel Simple In Vitro System Mimicking Natural Environment for the Biofilm Cultivation of Cutaneous Bacteria
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Sergey V. Mart’yanov, Andrei V. Gannesen, and Vladimir K. Plakunov
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Materials Chemistry ,Surfaces and Interfaces ,Surfaces, Coatings and Films - Abstract
Biofilms are microbial communities of cells embedded in extracellular matrix, and they are regarded as a major form of the natural and laboratory occurrence of bacteria. Cutaneous microbiota is represented by prokaryotic and eukaryotic organisms, which form biofilms in the different niches including the skin surface, glands, and hair follicles. Despite of a large number of in vitro studies dedicated to the biofilms of cutaneous bacteria, the methods used usually do not closely take into account the specific surroundings of certain skin parts. In this study, we introduce a new simple method of biofilm cultivation on the solid keratine/agarose pellets embedded in polyacrylamide gel. In such a model system, we tried to minimize the amount of liquid phase, which makes a model close to a human comedo, and provide a prominent biofilm formation of selected cutaneous bacteria.
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- 2022
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17. Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms
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Alexander I. Netrusov, Jörg Kahnt, Timo Glatter, S. V. Mart’yanov, Victor Sourjik, Nataliya A. Teteneva, Vladimir K. Plakunov, and María Esteban-López
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Physiology ,medicine.drug_class ,Antibiotics ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Chemical library ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Stress, Physiological ,Cation homeostasis ,Escherichia coli ,medicine ,Spotlight ,030304 developmental biology ,0303 health sciences ,drug repurposing ,Ecology ,biology ,030306 microbiology ,Cell growth ,Biofilm ,Biofilm matrix ,stress response ,biology.organism_classification ,Anti-Bacterial Agents ,chemistry ,Biofilms ,Bacteria ,Food Science ,Biotechnology - Abstract
The prevention of bacterial biofilm formation is one of the major current challenges in microbiology. Here, by systematically screening a large number of approved drugs for their ability to suppress biofilm formation by Escherichia coli, we identified a number of prospective antibiofilm compounds. We further demonstrated different mechanisms of action for individual compounds, from induction of replicative stress to disbalance of cation homeostasis to inhibition of bacterial attachment to the surface. Our work demonstrates the potential of drug repurposing for the prevention of bacterial biofilm formation and suggests that also for other bacteria, the activity spectrum of antibiofilm compounds is likely to be broad., In most ecosystems, bacteria exist primarily as structured surface-associated biofilms that can be highly tolerant to antibiotics and thus represent an important health issue. Here, we explored drug repurposing as a strategy to identify new antibiofilm compounds, screening over 1,000 compounds from the Prestwick Chemical Library of approved drugs for specific activities that prevent biofilm formation by Escherichia coli. Most growth-inhibiting compounds, which include known antibacterial but also antiviral and other drugs, also reduced biofilm formation. However, we also identified several drugs that were biofilm inhibitory at doses where only a weak effect or no effect on planktonic growth could be observed. The activities of the most specific antibiofilm compounds were further characterized using gene expression analysis, proteomics, and microscopy. We observed that most of these drugs acted by repressing genes responsible for the production of curli, a major component of the E. coli biofilm matrix. This repression apparently occurred through the induction of several different stress responses, including DNA and cell wall damage, and homeostasis of divalent cations, demonstrating that biofilm formation can be inhibited through a variety of molecular mechanisms. One tested drug, tyloxapol, did not affect curli expression or cell growth but instead inhibited biofilm formation by suppressing bacterial attachment to the surface. IMPORTANCE The prevention of bacterial biofilm formation is one of the major current challenges in microbiology. Here, by systematically screening a large number of approved drugs for their ability to suppress biofilm formation by Escherichia coli, we identified a number of prospective antibiofilm compounds. We further demonstrated different mechanisms of action for individual compounds, from induction of replicative stress to disbalance of cation homeostasis to inhibition of bacterial attachment to the surface. Our work demonstrates the potential of drug repurposing for the prevention of bacterial biofilm formation and suggests that also for other bacteria, the activity spectrum of antibiofilm compounds is likely to be broad.
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- 2020
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18. Regulation of Formation of Monospecies and Binary Biofilms by Human Skin Microbiota Components, Staphylococcus epidermidis and Staphylococcus aureus, by Human Natriuretic Peptides
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Vladimir K. Plakunov, Alexander I. Netrusov, Olivier Lesouhaitier, Marc G. J. Feuilloley, A. V. Gannesen, Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Lomonosov Moscow State University (MSU), Winogradsky Institute of Microbiology, and Russian Academy of Sciences [Moscow] (RAS)
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0301 basic medicine ,biology ,Human organism ,Chemistry ,Microorganism ,030106 microbiology ,Biofilm ,Human skin ,biochemical phenomena, metabolism, and nutrition ,medicine.disease_cause ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,Staphylococcus aureus ,Staphylococcus epidermidis ,[SDV.BC.IC]Life Sciences [q-bio]/Cellular Biology/Cell Behavior [q-bio.CB] ,medicine ,ComputingMilieux_MISCELLANEOUS - Abstract
Human natriuretic peptides (NUPs) types A and C were shown have different effects on the growth of monospecies and binary biofilms of human skin commensal microorganisms Staphylococcus epidermidis and Staphylococcus aureus. The effect of natriuretic peptides depended on cultivation conditions: at 37°С growth of monospecies biofilms formed by S. epidermidis and S. aureus was stimulated and inhibited, respectively, resulting in changed values of the biofilm average thickness and biomass in presence of NUPs. At 33°С effects of NUPs reversed: growth of S. epidermidis monospecies biofilms was inhibited. In binary biofilms at 37°С, NUPs were able to increase the competitiveness of S. epidermidis against S. aureus. NUPs affected predominantly biofilms and, to a lesser degree, planktonic cultures. This phenomenon makes it possible to consider NUPs as the molecules able to regulate the interactions between the human organism and skin microbiota.
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- 2018
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19. Stimulation of Violacein Biosynthesis in Chromobacterium violaceum Biofilms in the Presence of Dimethyl Sulfoxide
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S. V. Mart’yanov, Vladimir K. Plakunov, Andrey V. Letarov, and P. A. Ivanov
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0301 basic medicine ,biology ,Dimethyl sulfoxide ,030106 microbiology ,Biofilm ,Stimulation ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,chemistry ,Chromobacterium violaceum ,Violacein - Published
- 2018
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20. Epinephrine affects gene expression levels and has a complex effect on biofilm formation in Micrococcus luteus strain C01 isolated from human skin
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N.E. Makarova, N. D. Danilova, M.A. Ovcharova, Vladimir K. Plakunov, M.V. Sukhacheva, M. V. Zhurina, E. A. Botchkova, T.A. Pankratov, M.I. Schelkunov, D.S. Muzychenko, Alexey V. Feofanov, S. V. Mart’yanov, A. V. Gannesen, and Olga Geraskina
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Epinephrine ,Lysine ,Sulfurtransferase ,Applied Microbiology and Biotechnology ,Microbiology ,Phosphotransferase ,Transcriptomics ,Molecular Biology ,Alcohol dehydrogenase ,Colony-forming unit ,biology ,Chemistry ,Biofilm ,Cell Biology ,biology.organism_classification ,QR1-502 ,Confocal microscopy ,Micrococcus luteus ,Biochemistry ,Biofilms ,biology.protein ,NAD+ kinase ,RNA-seq ,TP248.13-248.65 ,Biotechnology - Abstract
In this study, the effect of epinephrine on the biofilm formation of Micrococcus luteus C01 isolated from human skin was investigated in depth for the first time. This hormone has a complex effect on biofilms in various systems. In a system with polytetrafluoroethylene (PTFE) cubes, treatment with epinephrine at a physiological concentration of 4.9 × 10−9 M increased the total amount of 72-h biofilm biomass stained with crystal violet and increased the metabolic activity of biofilms, but at higher and lower concentrations, the treatment had no significant effect. On glass fiber filters, treatment with the hormone decreased the number of colony forming units (CFUs) and changed the aggregation but did not affect the metabolic activity of biofilm cells. In glass bottom plates examined by confocal microscopy, epinephrine notably inhibited the growth of biofilms. RNA-seq analysis and RT–PCR demonstrated reproducible upregulation of genes encoding Fe–S cluster assembly factors and cyanide detoxification sulfurtransferase, whereas genes encoding the co-chaperone GroES, the LysE superfamily of lysine exporters, short-chain alcohol dehydrogenase and the potential c-di-GMP phosphotransferase were downregulated. Our results suggest that epinephrine may stimulate matrix synthesis in M. luteus biofilms, thereby increasing the activity of NAD(H) oxidoreductases. Potential c-di-GMP pathway proteins are essential in these processes.
- Published
- 2021
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21. Controlling of microbial biofilms formation: Anti- and probiofilm agents
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M. V. Zhurina, S. V. Mart’yanov, Vladimir K. Plakunov, and N. A. Teteneva
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0301 basic medicine ,Biofouling ,03 medical and health sciences ,Bioremediation ,030106 microbiology ,Biofilm ,biochemical phenomena, metabolism, and nutrition ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Inhibitory effect ,Microbial Biofilms - Abstract
Controlling the formation and reconstruction of microbial biofilms is of ever increasing importance for the ecological, medical, and biotechnological aspects of biofilm studies. The goal of this review was to provide systematization and analysis of the results obtained in recent years on the modes and mechanisms of the stimulatory or inhibitory effect of extreme factors and biocidal agents on biofilm formation. Special attention is paid to controlling the formation of medically (infective diseases, implant biofouling) and technologically or biotechnologically important biofilms (bioremediation, biocorrosion, and biosynthesis of biologically active compounds).
- Published
- 2017
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22. Niclosamide as a promising antibiofilm agent
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S. V. Mart’yanov, N. A. Teteneva, Victoria Y. Shtratnikova, M. V. Zhurina, A. V. Gannesen, and Vladimir K. Plakunov
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0301 basic medicine ,03 medical and health sciences ,Anthelmintic drug ,030106 microbiology ,Biofilm ,medicine ,Biology ,Pharmacology ,Applied Microbiology and Biotechnology ,Microbiology ,Niclosamide ,medicine.drug - Abstract
Search for inexpensive efficient compounds with antibiofilm activity, which could be applied both for treatment of biofilm-associated infections and in other cases requiring biofilm elimination, is presently of importance. For this purpose we chose niclosamide. Niclosamide is a widespread and available anthelmintic drug, which was also recently shown to suppress bacterial growth. High antibiofilm activity of niclosamide against a range of gram-positive bacteria isolated from different ecological niches was shown. According to our results, niclosamide may be a promising component of composite antibiofilm preparations.
- Published
- 2017
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23. Draft Genome Sequence of Kytococcus schroeteri Strain H01, Isolated from Human Skin
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M. V. Zhurina, Vladimir K. Plakunov, Amine M. Boukerb, A. V. Gannesen, Marc G. J. Feuilloley, S. V. Mart’yanov, Natalia D. Danilova, Magalie Robert, Nataliya A. Teteneva, Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), and Normandie Université (NU)-Normandie Université (NU)
- Subjects
[SDV]Life Sciences [q-bio] ,Erythromycin ,Human skin ,Biology ,Genome ,03 medical and health sciences ,Immunology and Microbiology (miscellaneous) ,Genetics ,medicine ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Whole genome sequencing ,Protein coding ,0303 health sciences ,integumentary system ,Strain (chemistry) ,030306 microbiology ,Genome Sequences ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,C content ,3. Good health ,Kytococcus schroeteri ,medicine.drug - Abstract
Kytococcus schroeteri strain H01 was isolated from the skin of a healthy volunteer who underwent erythromycin treatment for a skin disorder 1 year prior. The draft genome consists of 2.38 Mb, a G+C content of 73.06%, and 2,221 protein coding sequences. This is the first genome characterization of a K. schroeteri strain isolated from human skin.
- Published
- 2019
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24. The Impact of Norepinephrine on Mono-Species and Dual-Species Staphylococcal Biofilms
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Vladimir K. Plakunov, E. A. Botchkova, S. V. Mart’yanov, and A. V. Gannesen
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Microbiology (medical) ,Staphylococcus aureus ,skin microbiota ,Bacterial growth ,medicine.disease_cause ,Microbiology ,norepinephrine ,Norepinephrine (medication) ,03 medical and health sciences ,dual-species biofilms ,Staphylococcus epidermidis ,Virology ,Dual species ,medicine ,lcsh:QH301-705.5 ,030304 developmental biology ,0303 health sciences ,hormones ,biology ,030306 microbiology ,Chemistry ,Communication ,Biofilm ,biology.organism_classification ,lcsh:Biology (General) ,Competitive behavior ,biofilms ,Bacteria ,medicine.drug - Abstract
The effect of norepinephrine (“NE”) on Gram-negative bacteria is well characterized; however, little is known about the impact of NE on cutaneous Gram-positive skin residents, especially staphylococci. In this study, the impact of NE on monospecies and dual-species biofilms of Staphylococcus epidermidis and S. aureus model strains was investigated for the first time. Biofilms were grown in two different models (on polytetrafluoroethylene (“PTFE”) cubes and glass microfiber filters (“GMFFs”)) and additionally kinetic measurements of bacterial growth was performed. We have shown that NE can affect the biofilm formation of both species with a strong dependence on aerobic or anaerobic culture conditions in different models. It was shown that S. epidermidis suppresses S. aureus growth in dual-species biofilms and that NE can accelerate this process, contributing to the competitive behavior of staphylococci.
- Published
- 2021
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25. A universal method for quantitative characterization of growth and metabolic activity of microbial biofilms in static models
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Vladimir K. Plakunov, S. V. Mart’yanov, M. V. Zhurina, and N. A. Teteneva
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0301 basic medicine ,03 medical and health sciences ,medicine.medical_specialty ,030104 developmental biology ,Medical microbiology ,Chemistry ,030106 microbiology ,medicine ,Metabolic activity ,Applied Microbiology and Biotechnology ,Microbiology ,Microbial Biofilms - Published
- 2016
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26. Regulation of Monospecies and Mixed Biofilms Formation of Skin Staphylococcus aureus and Cutibacterium acnes by Human Natriuretic Peptides
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Marc G. J. Feuilloley, Pierre-Jean Racine, Olivier Lesouhaitier, Magalie Barreau, A. V. Gannesen, Vladimir K. Plakunov, Alexander I. Netrusov, Lomonosov Moscow State University (MSU), Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Winogradsky Institute of Microbiology, and Russian Academy of Sciences [Moscow] (RAS)
- Subjects
0301 basic medicine ,Microbiology (medical) ,Staphylococcus aureus ,medicine.drug_class ,030106 microbiology ,lcsh:QR1-502 ,multispecies biofilms ,Human skin ,medicine.disease_cause ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,Atrial natriuretic peptide ,Psoriasis ,[SDV.BC.IC]Life Sciences [q-bio]/Cellular Biology/Cell Behavior [q-bio.CB] ,Natriuretic peptide ,medicine ,Microbiome ,ComputingMilieux_MISCELLANEOUS ,Acne ,Original Research ,integumentary system ,Chemistry ,Biofilm ,medicine.disease ,3. Good health ,temperature dependent regulation ,human skin–microbiome interactions ,Cutibacterium acnes ,natriuretic peptides - Abstract
Staphylococcus aureus and Cutibacterium acnes are common representatives of the human skin microbiome. However, when these bacteria are organized in biofilm, they could be involved in several skin disorders such as acne or psoriasis. They inhabit in hollows of hair follicles and skin glands, where they form biofilms. There, they are continuously exposed to human hormones, including human natriuretic peptides (NUPs). We first observed that the atrial natriuretic peptide (ANP) and the C-type natriuretic peptide (CNP) have a strong effect S. aureus and C. acnes biofilm formation on the skin. These effects are significantly dependent on the aero-anaerobic conditions and temperature. We also show that both ANP and CNP increased competitive advantages of C. acnes toward S. aureus in mixed biofilm. Because of their temperature-dependent effects, NUPs appear to act as a thermostat, allowing the skin to modulate bacterial development in normal and inflammatory conditions. This is an important step toward understanding how human neuroendocrine systems can regulate the cutaneous microbial community and should be important for applications in fundamental sciences, medicine, dermatology, and cosmetology.
- Published
- 2018
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27. Effect of two cosmetic compounds on the growth, biofilm formation activity, and surface properties of acneic strains of Cutibacterium acnes and Staphylococcus aureus
- Author
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Valérie Borrel, Vladimir K. Plakunov, Marc G. J. Feuilloley, Luc Lefeuvre, A. V. Gannesen, Alexander I. Netrusov, Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Laboratoires dermatologiques d'URIAGE, Lomonosov Moscow State University (MSU), Winogradsky Institute of Microbiology, and Russian Academy of Sciences [Moscow] (RAS)
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0301 basic medicine ,Staphylococcus aureus ,030106 microbiology ,Thermal water ,Polysaccharide ,medicine.disease_cause ,Microbiology ,biofilm ,Bacterial Adhesion ,03 medical and health sciences ,Propionibacterium acnes ,surface adhesion ,[SDV.BC.IC]Life Sciences [q-bio]/Cellular Biology/Cell Behavior [q-bio.CB] ,medicine ,surface polarity ,ComputingMilieux_MISCELLANEOUS ,chemistry.chemical_classification ,Cutibacterium acnes ,biology ,Strain (chemistry) ,cosmetics ,Biofilm ,Original Articles ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Metabolism ,030104 developmental biology ,chemistry ,Biofilms ,Original Article ,Bacteria - Abstract
Increasing popularity of preservative‐free cosmetics necessitates in‐depth research, specifically as bacteria can react to local factors by important metabolic changes. In this respect, investigating the effect of cosmetic preparations on pathogenic strains of commensal species such as acneic forms of Cutibacterium acnes (former Propionibacterium acnes) and bacteria behaving both as commensals and opportunistic pathogens such as Staphylococcus aureus is of major interest. In this study, we studied the effect of commonly used cosmetics, Uriage™ thermal water (UTW) and a rhamnose‐rich polysaccharide (PS291®) on RT4 and RT5 acneic strains of C. acnes and a cutaneous strain of S. aureus. UTW affected the growth kinetic of acneic C. acnes essentially by increasing its generation time and reducing its biomass, whereas only the S. aureus final biomass was decreased. PS291 had more marginal effects. Both compounds showed a marked antibiofilm activity on C. acnes and S. aureus. For S. aureus that appeared essentially due to inhibition of initial adhesion. Cosmetics did not modify the metabolic activity of bacteria. Both C. acnes and S. aureus showed marked hydrophobic surface properties. UTW and PS291 had limited effect on C. acnes but increased the hydrophobic character of S. aureus. This work underlines the effect of cosmetics on cutaneous bacteria and the potential limitations of preservative‐free products.
- Published
- 2018
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28. Multi-species biofilms in ecology, medicine, and biotechnology
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Alla N. Nozhevnikova, Vladimir K. Plakunov, and E. A. Botchkova
- Subjects
Bioremediation ,Ecology ,Ecology (disciplines) ,Biofilm ,Human microbiome ,Multi species ,Sewage treatment ,Microbial mat ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Biotechnological process - Abstract
The structure, composition, and developmental patterns of multi-species biofilms are analyzed, as are the mechanisms of interaction of their microbial components. The main methodological approaches used for analysis of multi-species biofilms, including omics technologies, are characterized. Environmental communities (cyanobacterial mats and methanotrophic communities), as well as typical multi-species communities of medical importance (oral cavity, skin, and intestinal microbiomes), are described. A special section deals with the role of multi-species biofilms in such biotechnological processes as wastewater treatment, heavy metal removal, corrosion control, and environmental bioremediation.
- Published
- 2015
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29. Dynamics of biofilm formation on microscopic slides submerged in an anammox bioreactor
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E. A. Botchkova, Alla N. Nozhevnikova, and Vladimir K. Plakunov
- Subjects
Chemical engineering ,Chemistry ,Anammox ,Dynamics (mechanics) ,Bioreactor ,Biofilm ,Applied Microbiology and Biotechnology ,Microbiology - Published
- 2015
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30. Host Peptidic Hormones Affecting Bacterial Biofilm Formation and Virulence
- Author
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Sophie Rodrigues, Mélissande Louis, Thibaut Rosay, Pierre Cornelis, Emeline Bouffartigues, Marc G. J. Feuilloley, Florie Desriac, A. V. Gannesen, Alexis Bazire, Sylvie Chevalier, Ali Tahrioui, Vladimir K. Plakunov, Alain Dufour, Thomas Clamens, Olivier Lesouhaitier, Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Russian Academy of Sciences [Moscow] (RAS), Lomonosov Moscow State University (MSU), Laboratoire de Biotechnologie et Chimie Marines (LBCM), Université de Bretagne Sud (UBS)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
0301 basic medicine ,medicine.drug_class ,Calcitonin Gene-Related Peptide ,Peptide Hormones ,Antibiotics ,Virulence ,Biology ,medicine.disease_cause ,Gram-Positive Bacteria ,Dynorphins ,Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Gram-Negative Bacteria ,medicine ,Immunology and Allergy ,Humans ,Natriuretic Peptides ,ComputingMilieux_MISCELLANEOUS ,Pseudomonas aeruginosa ,Host (biology) ,Neuropeptides ,Biofilm ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,3. Good health ,030104 developmental biology ,030228 respiratory system ,Biofilms ,Somatostatin ,Bacteria ,Hormone - Abstract
Bacterial biofilms constitute a critical problem in hospitals, especially in resuscitation units or for immunocompromised patients, since bacteria embedded in their own matrix are not only protected against antibiotics but also develop resistant variant strains. In the last decade, an original approach to prevent biofilm formation has consisted of studying the antibacterial potential of host communication molecules. Thus, some of these compounds have been identified for their ability to modify the biofilm formation of both Gram-negative and Gram-positive bacteria. In addition to their effect on biofilm production, a detailed study of the mechanism of action of these human hormones on bacterial physiology has allowed the identification of new bacterial pathways involved in biofilm formation. In this review, we focus on the impact of neuropeptidic hormones on bacteria, address some future therapeutic issues, and provide a new view of inter-kingdom communication.
- Published
- 2018
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31. Structure of the O-specific polysaccharides from planktonic and biofilm cultures of Pseudomonas chlororaphis 449
- Author
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M. V. Zhurina, Alexander S. Shashkov, Evelina L. Zdorovenko, Yuriy A. Knirel, and Vladimir K. Plakunov
- Subjects
chemistry.chemical_classification ,biology ,Chemistry ,Proton Magnetic Resonance Spectroscopy ,Polysaccharides, Bacterial ,fungi ,Organic Chemistry ,Biofilm ,O Antigens ,O-Specific Polysaccharides ,General Medicine ,Composition analysis ,Plankton ,Pseudomonas chlororaphis ,biology.organism_classification ,Polysaccharide ,Biochemistry ,Analytical Chemistry ,Microbiology ,13c nmr spectroscopy ,Carbohydrate Sequence ,Biofilms ,Pseudomonas ,natural sciences - Abstract
O-Specific polysaccharides were obtained from the lipopolysaccharides isolated from the planktonic and biofilm cultures of Pseudomonas chlororaphis 449 and studied by composition analysis and 1D and 2D (1)H and (13)C NMR spectroscopy. The following structure was established: --4)-α-D-GalpNAc6Ac-(1--3)-β-D-QuipNAc-(1--6)-α-D-GlcpNAc-(1--β-D-GlcpNAc-(1--3) where the degree of non-stoichiometric 6-O-acetylation of GalNAc is ∼ 60% in the planktonic form or ∼ 10% in biofilm.
- Published
- 2015
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32. Activation of formation of bacterial biofilms by azithromycin and prevention of this effect
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M. V. Zhurina, Vladimir K. Plakunov, Mart'ianov Sv, and Galina I. El-Registan
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biology ,medicine.drug_class ,Antibiotics ,Pseudomonas ,Biofilm ,biology.organism_classification ,Azithromycin ,Applied Microbiology and Biotechnology ,Microbiology ,Kocuria ,Chromobacterium ,medicine ,Rhodococcus ,Bacteria ,medicine.drug - Abstract
Growth of members of most of the studied genera of gram-positive (Dietzia, Kocuria, and Rhodococcus) and gram-negative bacteria (Pseudomonas and Chromobacterium) in biofilms exhibited higher resistance to a translation inhibitor, azithromycin compared to the growth of planktonic cultures of the same strains. Low concentrations of azithromycin were found to stimulate biofilm formation by the studied saprotrophic strains. The rate of synthesis of the polysaccharide matrix component exceeded the rate of cell growth, indicating implementation of the biofilm phenotype under these conditions. It was found that an alkylhydroxybenzene (AHB) compound 4-hexylresorcinol was capable of almost uniform suppression of growth of both planktonic cultures and biofilms of the saprotrophic strains under study. In some cases, combined action of azithromycin and AHB resulted in an additive inhibitory effect and prevented the stimulation of biofilm growth by subinhibitory azithromycin concentrations. Thus, AHB may be considered a promising antibiofilm agent.
- Published
- 2014
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33. Composition and functions of the extracellular polymer matrix of bacterial biofilms
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Evelina L. Zdorovenko, Vladimir K. Plakunov, A. V. Gannesen, and M. V. Zhurina
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chemistry.chemical_classification ,Biofilm ,Biofilm matrix ,Polymer ,biochemical phenomena, metabolism, and nutrition ,Biology ,Matrix (biology) ,Polysaccharide ,Applied Microbiology and Biotechnology ,Microbiology ,Cell biology ,chemistry.chemical_compound ,Extracellular polymeric substance ,chemistry ,Biosynthesis ,Extracellular ,Biophysics - Abstract
The data on the composition and structure of the components comprising the extracellular polymer matrix of bacterial biofilms, the role of these components, and their functions in the biofilm are reviewed. The main biochemical mechanisms regulating the biosynthesis of biofilm matrix are discussed.
- Published
- 2014
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34. Visualization of the extracellular polymeric matrix of Chromobacterium violaceum biofilms by microscopic methods
- Author
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Nadezhda A. Kostrikina, E. A. Strelkova, M. V. Zhurina, Vladimir K. Plakunov, Georgy V. Maksimov, E. Yu. Parshina, and Alexander Yusipovich
- Subjects
biology ,Chemistry ,Extracellular ,Biofilm ,Polymeric matrix ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Chromobacterium violaceum - Published
- 2013
- Full Text
- View/download PDF
35. Substance P and Calcitonin Gene-Related Peptide: Key Regulators of Cutaneous Microbiota Homeostasis
- Author
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Valérie Borrel, Jérémy Enault, Olivier Maillot, Olivier Lesouhaitier, Sylvie Chevalier, Vladimir K. Plakunov, Pierre-Jean Racine, A. V. Gannesen, Marc G. J. Feuilloley, Awa N’Diaye, Laboratoire de Microbiologie Signaux et Microenvironnement (LMSM), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Winogradsky Institute of Microbiology, and Russian Academy of Sciences [Moscow] (RAS)
- Subjects
0301 basic medicine ,Protein moonlighting ,Mini Review ,substance P ,Endocrinology, Diabetes and Metabolism ,030106 microbiology ,Bacillus cereus ,EfTu thermo unstable ribosomal elongation factor ,Virulence ,Calcitonin gene-related peptide ,medicine.disease_cause ,calcitonin gene-related peptide ,Microbiology ,03 medical and health sciences ,Endocrinology ,Staphylococcus epidermidis ,skin bacterial communication ,medicine ,moonlighting proteins ,integumentary system ,biology ,microbial endocrinology ,DnaK chaperone protein ,biology.organism_classification ,MscL mechanosensitive channel ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Staphylococcus aureus ,Neurohormones ,Bacteria - Abstract
International audience; Neurohormones diffuse in sweat and epidermis leading skin bacterial microflora to be largely exposed to these host factors. Bacteria can sense a multitude of neurohormones, but their role in skin homeostasis was only investigated recently. The first study focused on substance P (SP), a neuropeptide produced in abundance by skin nerve terminals. SP is without effect on the growth of Gram-positive (Bacillus cereus, Staphylococcus aureus, and Staphylococcus epidermidis) and Gram-negative (Pseudomonas fluorescens) bacteria. However, SP is stimulating the virulence of Bacillus and Staphylococci. The action of SP is highly specific with a threshold below the nanomolar level. Mechanisms involved in the response to SP are different between bacteria although they are all leading to increased adhesion and/or virulence. The moonlighting protein EfTu was identified as the SP-binding site in B. cereus and Staphylococci. In skin nerve terminals, SP is co-secreted with the calcitonin gene-related peptide (CGRP), which was shown to modulate the virulence of S. epidermidis. This effect is antagonized by SP. Identification of the CGRP sensor, DnaK, allowed understanding this phenomenon as EfTu and DnaK are apparently exported from the bacterium through a common system before acting as SP and CGRP sensors. Many other neuropeptides are expressed in skin, and their potential effects on skin bacteria remain to be investigated. Integration of these host signals by the cutaneous microbiota now appears as a key parameter in skin homeostasis.
- Published
- 2017
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36. Role of the extracellular polymer matrix in resistance of bacterial biofilms to extreme environmental factors
- Author
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E. A. Strelkova, N. V. Pozdnyakova, M. V. Zhurina, Vladimir K. Plakunov, and S. S. Belyaev
- Subjects
chemistry.chemical_classification ,biology ,Homoserine ,Biofilm ,Biofilm matrix ,Polymer ,Matrix (biology) ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,chemistry.chemical_compound ,chemistry ,Extracellular ,Chromobacterium violaceum ,Bacteria - Abstract
Biofilms of a number of gram-positive and gram-negative bacteria (both environmental strains from the stratal waters of oil fields and collection strains) were found to exhibit higher resistance to extreme physicochemical factors (unfavorable temperature, pH, and salt concentration) than planktonic cultures. The extracellular polymers forming the structure of the biofilm matrix were shown to contribute significantly to this resistance, since suppression of matrix formation by subbacteriostatic concentrations of azithromycin (for Pseudomonas acephalitica) or mutation in the cvil gene encoding N-hexanoyl homoserine lactone synthetase (for Chromobacterium violaceum CV026) resulted in the resistance of biofilms being decreased almost to the level of planktonic cultures. The role of the biofilm matrix for bacterial survival under extreme conditions is discussed.
- Published
- 2013
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37. Роль внеклеточного полимерного матрикса в устойчивости бактериальных биопленок к экстремальным факторам среды
- Author
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M. V. Zhurina, E. A. Strelkova, Vladimir K. Plakunov, Pozdniakova Nv, and S S Beliaev
- Subjects
General Medicine - Abstract
Установлено, что биопленки ряда грамположительных и грамотрицательных бактерий (как изолированных из пластовых вод нефтяного месторождения, так и коллекционных штаммов) обладают повышенной по сравнению с планктонными культурами устойчивостью к экстремальным физико-химическим условиям среды (неблагоприятной температуре, рН и концентрации соли). Показано, что существенную роль в этой устойчивости играют внеклеточные полимерные вещества, составляющие структуру матрикса биопленки, поскольку при подавлении образования матрикса под воздействием суббактериостатических концентраций антибиотика азитромицина (в случае Pseudomonas acephalitica), а также в результате мутации гена cvil, кодирующего синтетазу N-гексаноилгомосеринлактона (в случае Chromobacterium violaceum CV026), чувствительность биопленок к экстремальным факторам среды снижается практически до уровня планктонных культур. Обсуждается значение матрикса биопленки для выживания бактерий в экстремальных условиях.
- Published
- 2013
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38. Stimulation of biofilm formation by antibiotics
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E. A. Strelkova, M. V. Zhurina, S. S. Belyaev, and Vladimir K. Plakunov
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medicine.medical_specialty ,medicine.drug_class ,Chemistry ,Antibiotics ,Biofilm ,Stimulation ,Azithromycin ,Applied Microbiology and Biotechnology ,Microbiology ,Quorum sensing ,chemistry.chemical_compound ,Medical microbiology ,medicine ,Crystal violet ,medicine.drug - Published
- 2012
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39. Mechanisms of oxygen regulation in microorganisms
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Vladimir K. Plakunov and O. V. Shelemekh
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Osmotic shock ,Microorganism ,Reverse transition ,Repressor ,Oxygen regulation ,Biology ,Hypoxia (medical) ,Applied Microbiology and Biotechnology ,Microbiology ,Metabolism regulation ,Cell biology ,Biochemistry ,medicine ,medicine.symptom ,Transcription factor - Abstract
The review considers the main mechanisms of metabolism regulation that operate in pro- and eukaryotic microorganisms upon changes in the partial pressure of oxygen in the medium, i.e., upon transition from normoxia via hypoxia to anoxia or upon the reverse transition. The involvement in these processes of hemes, the Hap transcription factors, the Rox1 repressor protein, sterols, and other regulatory factors is discussed.
- Published
- 2009
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40. Resistance of the oil-oxidizing microorganism Dietzia sp. to hyperosmotic shock in reconstituted biofilms
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S. S. Belyaev, Vladimir K. Plakunov, and M. V. Zhurina
- Subjects
biology ,Microorganism ,Biofilm ,Ectoine ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Halophile ,chemistry.chemical_compound ,chemistry ,Halotolerance ,Yeast extract ,Osmoprotectant ,Bacteria - Abstract
A number of halotolerant and halophilic bacterial strains were isolated from the Romashkinskoe oil field (Tatarstan) stratal waters having a salinity of up to 100 g/l. The isolation of pure cultures involved biofilm reconstitution on M9 medium with paraffins. The associations obtained were dispersed and reinoculated onto solid media that contained either peptone and yeast extract (PY medium) or paraffins. It was shown that such associations included both oil-oxidizing bacteria and accompanying chemoheterotrophic bacteria incapable of oil oxidation. The pure cultures that were isolated were used for creating binary biofilms. In these biofilms, interactions between halophilic and nonhalophilic bacteria under hypo-and hyperosmotic shocks were investigated. We conducted a detailed study of a biofilm obtained from an oil-oxidizing halotolerant species (with an upper growth limit of 10–12% NaCl) identified as Dietzia sp. and an extremely halophilic gram-negative bacterium (growing within the 5–20% NaCl concentration range) of the genus Chromohalobacter that did not oxidize paraffins. If these microorganisms were grown in a mixed suspension (planktonic) culture that was not supplemented with an additional amount of NaCl, no viable cells of the halophilic microorganism were detected after reinoculation. In contrast, only halophilic cells were detected at a NaCl concentration of 15%. Thus, no mutual protective influence of the microorganisms manifested itself in suspension culture, either under hypoor under hyperosmotic shock. Neither could halophile cells be detected after reinoculating a biofilm obtained on a peptone medium without the addition of NaCl. However, biofilms produced at a NaCl concentration of 15% contained approximately equal numbers of cells of the halophilic and halotolerant organisms. Thus, the halophile in biofilms sustaining a hyperosmotic shock exerts a protective influence on the halotolerant microorganism. Preliminary data suggest that this effect is due to release by the halophile of osmoprotective substances (ectoine and glutamate), which are taken up by the halotolerant species. Such substances are diluted by a large medium volume in suspension cultures, whereas, in biofilms, their diffusion into the medium is apparently hampered by their interaction with the intercellular polymer matrix.
- Published
- 2008
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41. Biofilm—'City of microbes' or an analogue of multicellular organisms?
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Iu A Nikolaev and Vladimir K. Plakunov
- Subjects
Multicellular organism ,Biocide ,Microbial ecology ,Ecology ,Microorganism ,Biofilm ,Bacterial Physiological Phenomena ,biochemical phenomena, metabolism, and nutrition ,Biology ,Applied Microbiology and Biotechnology ,Microbiology - Abstract
The definition of the term "biofilm" and the validity of the analogy between these structured microbial communities and multicellular organisms are discussed in the review. The mechanisms of biofilm formation, the types of interrelations of the components of biofilms, and the reasons for biofilm resistance to biocides and stress factors are considered in detail. The role of biofilms in microbial ecology and in biotechnology is discussed.
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- 2007
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42. 'Oxygen regulation' of the respiratory chain composition in the yeast Debaryomyces hansenii under multiple stress
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S. S. Belyaev, O. V. Shelemekh, O. V. Heidebrecht, and Vladimir K. Plakunov
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Oxidase test ,Osmotic concentration ,biology ,Osmotic shock ,Respiratory chain ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Yeast ,chemistry.chemical_compound ,Biochemistry ,chemistry ,Debaryomyces hansenii ,Sodium azide ,Azide - Abstract
It was shown that two stress factors, hypoxia and hyperosmotic shock, if applied simultaneously to the yeast Debaryomyces hansenii, display an antagonistic mode of interaction, which results in an increased degree of halophily of this microorganism under microaerobic conditions. Studies of the effects of respiration inhibitors (sodium azide and salicyl hydroxamic acid, SHA) and of the pattern of changes in the composition of the respiratory chain of Debaryomyces hansenii under the stated stress conditions led to the suggestion of three (or four) chains of electron transfer functioning simultaneously in the cell: the classical respiratory chain involving cytochrome-c oxidase, an alternative respiratory chain involving a cyanide- and azide-resistant oxidase, and additional respiratory chains involving oxidases resistant to salt, azide and SHA. Thus, the antagonistic mode of interaction between hypoxia and hyperosmotic shock results from the redirection of the electron flow from the salt-susceptible respiratory systems to the salt-unsusceptible ones encoded by "the hypoxia genes" and activated (induced) under microaerobic conditions.
- Published
- 2006
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43. The structural bases of long-term anabiosis in non-spore-forming bacteria
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Vitalii I. Duda, Ekaterina S. Barinova, Andrey L. Mulyukin, Vladimir K. Plakunov, Vladimir V. Dmitriev, A. P. Shorokhova, Natalia E. Suzina, Yulia S. Bobkova, Galina I. El-Registan, and Yury A. Nikolaev
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Atmospheric Science ,Growth medium ,biology ,Chemistry ,Microorganism ,Aerospace Engineering ,Astronomy and Astrophysics ,biology.organism_classification ,Halophile ,Cell wall ,chemistry.chemical_compound ,Geophysics ,Space and Planetary Science ,Botany ,Ultrastructure ,General Earth and Planetary Sciences ,Dormancy ,Bacteria ,Archaea - Abstract
Peculiarities of the structural organization in non-spore-forming bacteria associated with long-term anabiosis were revealed both in laboratory cultures and in natural populations isolated from 1–3-Myr-old Eastern Siberian permafrost and tundra soil. Different advanced methods were used, including (a) high-resolution electron microscopy; (b) simulation of in situ conditions in the laboratory by varying the composition of growth medium and cultivation conditions; (c) low-temperature fractionation to isolate and concentrate microbial cells from natural soils; (d) comparative morphological analysis of microbial cells in model cultures and natural soils (in situ). Under laboratory conditions, the intense formation of resting cells by representatives of various taxa of eubacteria and halophilic archaea occurred in 2–9-month-old cultures grown in carbon-, nitrogen-, or phosphorus-limited media, in starved cell suspensions in the presence of sodium silicate, or on soil agar. Among resting cells, we revealed cystlike forms having a complicated structure and common features. These included a thick capsule; a thickened and multiprofile cell wall; the presence of large intramembrane particles on PF- and EF-fracture surfaces; fine-grained or lumpy cytoplasm; and a condensed nucleoid. The general morphological properties, ultrastructural organization, physiological features of cystlike cells, and their ability to germinate under the appropriate conditions suggest the existence of constitutive dormancy in non-spore-forming bacteria. It was found that the majority of microorganisms in permafrost and tundra soil are cystlike cells, very similar to those in laboratory cultures. Anabiotic (resting) cystlike cells are responsible for the survival of non-spore-formers in extreme Earth habitats and may be regarded as possible analogs of extraterrestrial forms of microbial life.
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- 2006
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44. The Study of the Physiology and Biochemistry of Microorganisms at the Institute of Microbiology, Russian Academy of Sciences
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Galina I. El-Registan and Vladimir K. Plakunov
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Physiology ,Biology ,Applied Microbiology and Biotechnology ,Microbiology - Published
- 2004
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45. [Untitled]
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V. G. Arzumanyan, S. S. Belyaev, O. V. Heidebrecht, and Vladimir K. Plakunov
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Oxidase test ,biology ,Osmotic shock ,Microorganism ,Rhodotorula ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Yeast ,Biochemistry ,Catalase ,biology.protein ,Halotolerance ,Malassezia - Abstract
The biochemical mechanisms were studied that determine different reactions of yeasts of different genera to two simultaneously imposed stressors, hypoxia and osmotic shock. For Candida lipolytica, these two stressors were antagonistic, which resulted in stimulation (and not suppression) of the growth of this yeast by NaCl (in a wide range of concentrations) under microaerobic conditions. The reaction of Malasseziasp. was different: the degree of halotolerance of this microorganism was lower under microaerobic conditions. An intervening reaction pattern was characteristic of Rhodotorula aurantiaca.These differences were found to be determined, above all, by the induction of a salt-resistant respiratory system (oxidase) in C. lipolytica, which could not be induced in Malassezia sp. In addition, the synthesis of catalase was enhanced in C. lipolytica, which provided for neutralization of the active forms of oxygen accumulating as a result of inhibition of other protective enzymes by salt.
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- 2003
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46. [Untitled]
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Vladimir K. Plakunov, S. S. Belyaev, O. V. Geidebrekht, O. V. Shelemekh, V. G. Arzumanyan, and N. A. Voronina
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biology ,Yarrowia ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Halophile ,Superoxide dismutase ,Biochemistry ,Catalase ,Halobacterium salinarum ,biology.protein ,Halotolerance ,Osmoprotectant ,Rhodococcus - Abstract
Two stress factors, hypoxia (microaerobic conditions) and a high salt concentration, if applied simultaneously to aerobic microorganisms, display an antagonistic mode of interaction. As a result, the NaCl level that is usually optimal for moderate halophiles (5-6%) becomes optimal for the growth of weak halophiles (Rhodococcus erythropolis and Shewanella sp. CN32); the halotolerant yeast Yarrowia lypolytica acquires halophilic properties (with a growth optimum at a NaCl concentration of 10%), and the growth rate of the extremely halophilic Halobacterium salinarum increases at supraoptimal salt concentrations (25-34%). This phenomenon is apparently due to multiple changes in metabolic reactions. In particular, high salt concentrations suppress respiration and the formation of enzymes (superoxide dismutase and catalase) that protect the cell from toxic oxygen species. Therefore, establishment of microaerobic conditions compensates for the loss of these protective mechanisms and enables cell growth at higher salt concentrations than under aerobic conditions. Of some importance can also be the increase in the intracellular concentrations of osmoprotectants caused by the suppression of their intracellular oxidation. The implications of this phenomenon for the ecophysiology of microorganisms (including oiloxidizing species) and for the classification of weak and moderate halophiles are discussed.
- Published
- 2002
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47. Effect of reconstituted biofilm composition on bacterial hydrocarbon-oxidizing activity
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E. A. Strelkova, Vladimir K. Plakunov, S. S. Belyaev, and M. V. Zhurina
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chemistry.chemical_classification ,Hydrocarbon ,chemistry ,Biofilm composition ,Environmental chemistry ,Oxidizing agent ,Applied Microbiology and Biotechnology ,Microbiology - Published
- 2008
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48. The degree of halophily inRhodococcus erythropolis andHalobacterium salinarum depends on the partial pressure of oxygen
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V. G. Arzumanyan, Vladimir K. Plakunov, N. A. Voronina, and S. S. Belyaev
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Halobacteriales ,biology ,Partial pressure ,biology.organism_classification ,Halobacterium ,Applied Microbiology and Biotechnology ,Microbiology ,Degree (temperature) ,Salinity ,Halobacterium salinarum ,Biophysics ,Halobacteriaceae ,Aeration rate - Abstract
The degree of halophily inRhodococcus erythropolis andHalobacterium salinarum was found to increase under microaerobic conditions. This was evidently due to the fact that the two stress factors (high salt and low oxygen concentrations) acted in an antagonistic manner. The results obtained suggest that the aeration rate should be taken into account while estimating the degree of halophily of a microorganism.
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- 2000
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49. [Untitled]
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O. V. Shelemekh, Vladimir K. Plakunov, and S S Beliaev
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Halobacteriales ,Archaeobacteria ,biology ,Halophilic archaeon ,Proton ,Chemistry ,Halobacterium salinarum ,Halobacteriaceae ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Bacteria - Published
- 2002
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50. Effect of bacterial satellites on Chlamydomonas reinhardtii growth in an algo-bacterial community
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G. V. Ovechkina, N. A. Voronina, O. A. Gogoleva, N. V. Nemtseva, Yu. A. Nikolaev, Vladimir K. Plakunov, Andrey O. Plotnikov, and M. E. Murav’eva
- Subjects
biology ,Serial dilution ,Chlamydomonas reinhardtii ,Bacillus sp ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,chemistry.chemical_compound ,chemistry ,Algae ,Chlorophyll ,Micrococcus roseus ,Rhodococcus ,Bacteria - Abstract
The growth characteristics of an algo-bacterial community (Chlamydomonas reinhardtii and bacterial satellites) were studied, as well as the mechanism and patterns of bacterial effect on algae. Four strains of predominant bacteria were isolated and partially characterized. They were assigned to the following taxa: Rhodococcus terrea, Micrococcus roseus, and Bacillus spp. A pure culture of the alga under study was obtained by plating serial dilutions on agarized media. Within the algo-bacterial association, the alga had a higher growth rate (0.76 day−1) and yield (60 μg chlorophyll/ml culture) than in pure cultures (0.4 day−1 and 10 μg chlorophyll/ml culture, respectively). The viability of the algal cells within the association was retained longer than in pure culture. Among the isolated bacterial satellites, strains B1 and Y1, assigned to the species Rhodococcus terrae, had the highest stimulatory effect on algal growth. The culture liquid of bacteria incubated under the conditions not permitting growth stimulated algal growth; the culture liquid of actively growing bacteria had an opposite effect.
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