355 results on '"Vries, B. de"'
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2. Verkenning probleemlocaties onderhoud Nederlandse kust : Alternatieve beheer- en onderhoudsstrategieën voor Vlieland Havenstrand, Texel Zuidwest, Dishoek en Nieuwvliet-Groede
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Vries, B. de and Vries, B. de
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Voor de evaluatie van de Basiskustlijn (BKL) 2023 is RWS in het voorjaar van 2021 gestart met een inventarisatie van de locaties die mogelijk in aanmerking kwamen voor herziening. Hierbij zijn vier locaties geïdentificeerd waar het praktisch moeilijk uitvoerbaar is om de positie van de kustlijn t.o.v. de BKL met reguliere zandsuppleties te handhaven en waar een landwaartse verlegging van de BKL niet wenselijk is vanwege aanwezige functies: Vlieland Havenstrand, Texel Zuidwest, Dishoek en Nieuwvliet-Groede. Voor deze vier locaties is het denkbaar dat andere oplossingen dan reguliere zandsuppleties kunnen bijdragen aan het efficiënter onderhouden van de kust. Daarom worden deze vier locaties nader beschouwd in dit verkennende onderzoek: “Verkenning probleemlocaties kustonderhoud”. Doel van het verkennende onderzoek is om een duidelijk pallet aan opties te geven voor alternatieve onderhoudsstrategieën voor de vier probleemlocaties, met daarbij de voor- en nadelen ten opzichte van de huidige beheer- en onderhoudsstrategie. Dit vormt een duidingskader voor een vervolg richting bijvoorbeeld beleidsmakers.
- Published
- 2023
3. Cumulatieve effecten baggeren en verspreiden op habitattype H1130 in het Eems estuarium
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Vroom, J., Vries, B. de, Dankers, P., Maren, B. van, Vroom, J., Vries, B. de, Dankers, P., and Maren, B. van
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Het voorliggende rapport heeft als doel meer inzicht te geven in de cumulatieve effecten van de bagger- en verspreidingsactiviteiten, zoals de volumes en de methoden die daarmee gepaard gaan. We beschouwen zowel de activiteiten op Nederlands en op Duits grondgebied en de effecten hiervan op het abiotische en biotische systeem in het algemeen en meer specifiek op het doelbereik van de instandhoudingsdoelstellingen van habitattype H1130 (estuaria).
- Published
- 2022
4. Verkenningsfase versterking IJsselmeerdijk : Milieueffectrapport (plan-MER)
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Laar, R. van de, Post, S., Brink, M., Haan, M. de, Wolbers, M., Vries, B. de, Engel, W., Bruchem, R. van, Laar, R. van de, Post, S., Brink, M., Haan, M. de, Wolbers, M., Vries, B. de, Engel, W., and Bruchem, R. van
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De IJsselmeerdijk beschermt de diepe Flevopolder tegen het water van het IJsselmeer. In 2018 heeft Waterschap Zuiderzeeland (hierna afgekort als: Zuiderzeeland) beoordeeld of de IJsselmeerdijk zo sterk is als de waterveiligheidsnormen voorschrijven. Dat blijkt niet zo te zijn. Zuiderzeeland is daarom in 2019 gestart met het meerjarige project Versterking IJsselmeerdijk. Het deel van de IJsselmeerdijk dat versterkt moet worden, is 17,6 km lang en ligt aan de noordwestzijde van Oostelijk Flevoland. De waterkering loopt van de Ketelbrug in het noorden tot aan de Houtribdijk in Lelystad. Het projectdoel is het realiseren van een veilige én toekomstbestendige dijk. De nieuwe dijk wordt goed ingepast in de omgeving met behoud van de huidige ruimtelijke kwaliteit en er wordt nadrukkelijk gezocht naar de mogelijkheden voor het inpassen van innovatieve en duurzame oplossingen. Momenteel bevindt het project zich in de Verkenningsfase, volgens de fasering uit het landelijke Hoogwaterbeschermingsprogramma (HWBP). De planning is nu dat de verkenning halverwege 2022 wordt afgerond en resulteert in een Voorkeursbeslissing (VKB). De periode 2022- 2024 staat gepland voor de planuitwerkingsfase, in de periode hierna volgt de realisatiefase.
- Published
- 2022
5. A case report of ectopic salivary gland tissue in the larynx
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Smit J, Heijden S Van Der, Sleurs K, Netherlands. Sittard-Geleen, and Vries B De
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Larynx ,Pathology ,medicine.medical_specialty ,medicine.anatomical_structure ,business.industry ,otorhinolaryngologic diseases ,medicine ,business ,Ectopic salivary gland tissue - Abstract
Submucosal laryngeal masses are challenging for ENT specialists as the diagnosis usually remains uncertain until histopathological examination is carried out. We report a case of a 54-year old man complaining of dysphonia and globus sensation. Flexible laryngoscopic examination showed a submucosal swelling in the right anterior laryngeal ventricle. Microlaryngoscopic excision of the submucosal mass was performed. Histological examination revealed salivary gland tissue. We found only a few cases in the literature of ectopic salivary gland tissue situated in the larynx. In these cases, the salivary gland tissue was also located at the anterior portion of the true or false vocal fold. Thus, it is necessary to consider this condition in the differential diagnosis of a submucosal mass in the anterior true or false vocal fold or laryngeal ventricle.
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- 2021
- Full Text
- View/download PDF
6. Kwelderontwikkeling als Nature-based Solution : Kennis en ervaring van de Proefkwelder Marconi
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Leuven, J., Vries, B. de, Dankers, P., Puijenbroek, M. van, Willemsen, P., Coumou, L., Cleveringa, J., Baptist, M., Elschot, K., Leuven, J., Vries, B. de, Dankers, P., Puijenbroek, M. van, Willemsen, P., Coumou, L., Cleveringa, J., Baptist, M., and Elschot, K.
- Abstract
Bij Delfzijl is een kwelderlandschap aangelegd voor de kust als onderdeel van de gebiedsontwikkeling Marconi Buitendijks. Ter verduidelijking, er is niet een volgroeide kwelder aangelegd maar een lage onbegroeide kwelder welke zou moeten uitgroeien tot een volledig kwelderlandschap dat gekenmerkt wordt door een opeenvolging van hoge, middel en lage kwelder en wadplaten. Een deel van het aangelegde kwelderlandschap is ingericht als proefkwelder en een ander deel is ingericht als stadskwelder (ook wel kwelderpark genoemd). De hoofddoelstellig van het project was een veilige en aantrekkelijke kust met ruimte voor recreatie. Eén van de nevendoelstellingen van het project is het delen van kennis over de aanleg van kwelders en het uitdragen van de bredere toepasbaarheid en voordelen daarvan. Dit rapport gaat over dit nevendoel.
- Published
- 2021
7. Teachers as co-designers: Scientific and colloquial evidence on teacher professional development and curriculum innovation
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Pieters, J.M., Voogt, J.M., Pareja Roblin, N., Westbroek, H., Vries, B. de, Walraven, A., Handelzalts, A., Pieters, J.M., Voogt, J.M., Pareja Roblin, N., Westbroek, H., Vries, B. de, Walraven, A., and Handelzalts, A.
- Abstract
Item does not contain fulltext, Teachers are increasingly acting as co-designers of curriculum materials, because this process can positively affect their professional development while also yielding resources that are relevant and useful for their teaching practice. This study explores evidence related to the claim that involving teachers in collaborative design is worth the effort. We used two data sources: papers from scientific journals, reflecting the researcher’s perspective, and from professional journals, providing a colloquial corpus reflecting the teacher’s perspective. We conclude that the colloquial corpus justifies our claim that co-design is gaining momentum, but that the scientific corpus is still limited in number of articles. We were able to identify common patterns across the professional articles that complement the patterns identified in the scientific corpus. At the same time, two distinct pictures of design teams emerge from these two corpora, with different process characteristics as well as reported effects.
- Published
- 2019
8. The trans-DATA study: aims and design of a translational breast cancer prognostic marker identification study
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Ruijter, T.C. de, Smits, K.M., Aarts, M.J., Hellemond, I.E. van, Neste, L. Van, Vries, B. de, Peer, P.G.M., Veeck, J., Engeland, M. van, Tjan-Heijnen, V.C., Ruijter, T.C. de, Smits, K.M., Aarts, M.J., Hellemond, I.E. van, Neste, L. Van, Vries, B. de, Peer, P.G.M., Veeck, J., Engeland, M. van, and Tjan-Heijnen, V.C.
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Contains fulltext : 215547.pdf (publisher's version ) (Open Access), Background: The effect of extended adjuvant aromatase inhibition in hormone-positive breast cancer after sequential tamoxifen, aromatase inhibitor treatment of 5 years was recently investigated by the DATA study. This study found no statistically significant effect of prolonged aromatase therapy. However, subgroup analysis showed post hoc statistically significant benefits in certain sub-populations. The trans-DATA study is a translational sub-study aiming to identify DNA methylation markers prognostic of patient outcome. Methods: Patients from the DATA study are included in the trans-DATA study. Primary breast tumour tissue will be collected, subtyped and used for DNA isolation. A genome-wide DNA methylation discovery assay will be performed on 60 patients that had a distant recurrence and 60 patients that did not have a distant recurrence using the Infinium Methylation EPIC Bead Chip platform. Differentially methylated regions of interest will be selected based on Akaike's Information Criterion, Gene Ontology Analysis and correlation between methylation and expression levels. Selected candidate genes will subsequently be validated in the remaining patients using qMSP. Discussion: The trans-DATA study uses a cohort derived from a clinical randomised trial. This study was designed to avoid common pitfalls in marker discovery studies such as selection bias, confounding and lack of reproducibility. In addition to the usual clinical risk factors, the results of this study may identify predictors of high recurrence risk in hormone receptor-positive breast cancer patients treated with sequential tamoxifen and aromatase inhibitor therapy.
- Published
- 2019
9. Hoe ga je om met fysieke belasting? Netwerk duurzaam fysiek werk
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Vries, B. de and Douwes, M.
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SHB - Safe & Healthy Business ,Fysieke belasting ,Work and Employment ,Werknemers ,Gezondheid ,Resilient Organisations ,ELSS - Earth, Life and Social Sciences ,Workplace ,Healthy Living ,Arbeidsomstandigheden - Abstract
Hoe ga je om met fysieke belasting binnen je organisatie en hoe zorg je dat medewerkers fysiek werk gezond en productief kunnen blijven uitvoeren tot hun pensioen? Hoe doen andere organisaties dit en hoe kunnen we van elkaar leren? En hoe ziet dit er dan in de praktijk uit? Dat en meer staat centraal in het Netwerk Duurzaam Fysiek Werk.
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- 2018
10. Buiten de deur, binnen de wet: plaatsonafhankelijk werk en de RI&E
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Hooftman, W.E., Vries, B. de, and Kwantes, J.H.
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Life ,WHC - Work, Health and Care ,Fysieke belasting ,Work and Employment ,Werknemers ,ELSS - Earth, Life and Social Sciences ,Workplace ,Healthy Living ,Arbeidsomstandigheden ,Werkplek - Abstract
Werk in 2018 is niet hetzelfde als werk in1998. Maatschappelijke en technologische verande-ringen maken werk op andere plekken steeds gebruikelijker. Moet een werkgever daar ook een RI&E voor maken? Vakmedia
- Published
- 2018
11. The transcriptional regulator ADNP links the BAF (SWI/SNF) complexes with autism
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Vandeweyer, G., Helsmoortel, C., Dijck, A. Van, Silfhout, A.T. van, Coe, B.P., Bernier, R., Gerdts, J., Rooms, L., Ende, J. van den, Bakshi, M., Wilson, M., Nordgren, A., Hendon, L.G., Abdulrahman, O.A., Romano, C, Vries, B. de, Kleefstra, T., Eichler, E.E., Aa, N. van der, and Kooy, R.F.
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Neurodevelopmental disorders Radboud Institute for Molecular Life Sciences [Radboudumc 7] - Abstract
Contains fulltext : 137084.pdf (Publisher’s version ) (Closed access)
- Published
- 2014
12. Klimaatbestendig ontwerpen : studie in Breezicht, Zwolle laat zien hoe het kan
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Vries, B. de, Hettinga, O., Vries, B. de, and Hettinga, O.
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Klimaatstresstesten staan volop in de belangstelling bij gemeenten en waterschappen. Vooraf toetsen en optimaliseren van een stedenbouwkundig ontwerp op klimaatbestendigheid is een kleine moeite en kan problemen en ongewenste kosten achteraf voorkomen. Nog mooier is het als de toets integraal onderdeel is van het ontwerpproces. In de Zwolse nieuwbouwwijk Breezicht zijn interessante ervaringen opgedaan.
- Published
- 2018
13. Burgemeesters in crisistijd : de invloed van context en persoonlijkheid op het leiderschap van de opperbevelhebber
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Vries, B. de, Dreu, C.K.W. de, Hoogh, A.H.B. de, Dijk, E. van, Hartog, D.N. den, Stoker, J.I., and Leiden University
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Agreeableness ,Autocratic and participative leadership ,Mayors ,Trait activation ,Decision-making ,Crisis - Abstract
To an increasingly greater degree, incidents and crises are dominating daily life. In this context, mayors are seen as the guardian of local society. As commander-in-chief of the municipal crisis authority, with increasing frequency they are confronted with the extremely difficult task to manage crises effectively. Mayors are expected by many to display more leadership during crises than during normal day-to-day practice. This thesis describes research into antecedents, moderators, outcomes and contingencies of effective leadership behaviour during times of crisis, paying particular attention to the performance of mayors, as heads of local authority, in the Netherlands in their role of crisis manager. What determines the success of the leadership of mayors during crises; their personality, the leadership context (its possible variations), or both? It was demonstrated that agreeableness differs in relevance for autocratic and participative leadership behaviour of the mayor. The extent to which the leadership behaviour in question is effective, was shown to also be determined by the situation. Where an autocratic line of action is sometimes inevitable—when there is high time pressure, the effectiveness of participative leadership behaviour can be connected to different team processes, especially when the crisis situation is characterised by a high level of ambiguity.
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- 2016
14. Lattice location study of implanted In in Ge
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Decoster, S., Vries, B. De, Wahl, U., Correia, J.G., and Vantomme, A.
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Indium -- Electric properties ,Indium -- Thermal properties ,Density functionals -- Usage ,Germanium -- Mechanical properties ,Germanium -- Thermal properties ,Semiconductor doping -- Analysis ,Physics - Abstract
Emission channeling experiments were performed to determine the lattice location and the thermal stability of implanted [super 111]In atoms in Ge. The comparison of emission results with ab initio calculations, electrical studies, and perturbed angular correlation experiments revealed that the In atoms on the BC site could be related to In-vacancy and In-self-interstitial defect complexes.
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- 2009
15. In search of optimal cooperation : a focus on Dutch patient advocacy organizations
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Vries, B. de, Vries, B. de, Vries, B. de, and Vries, B. de
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- 2013
16. Designing green and blue infrastructure to support healthy urban living
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Gehrels, H., Meulen, S. vsn der, Schasfoort, F., Bosch, P.R., Brolsma, R., Dinter, D. van, Geerling, G.J., Goossen, M., Jacobs, C., Jong, M. de, Kok, S., Massop, H., Oste, L., Perez-Soba, M., Rovers, V., Smit, A., Verweij, P., Vries, B. de, and Weijers, E.
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Urban Development ,Urban Mobility & Environment ,CAS - Climate, Air and Sustainability ,ELSS - Earth, Life and Social Sciences ,Environment ,Built Environment - Abstract
There is a growing awareness in cities throughout the world that green and blue infrastructure can offer a wide range of ecosystem services to support a healthy urban environment. For example, landscape architects explore possibilities in their design of the urban landscape to use the potential of green elements for regulating air temperature, air quality, water storage and drainage, and noise reduction. However, the potential benefits of green and blue infrastructure are probably only partially utilized because of a lack of both scientific knowledge and practical understanding of what
- Published
- 2016
17. Climate Resilience and Circularity in Construction assigments
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Zomeren, A. van, Lange, G. de, Meerten, H. van, Lelieveld, C., Vries, B. de, Rover, V., Visser, J., and Vos, S. d.
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- 2016
18. The persuasiveness of a smiling embodied conversational agent
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Vries, B. de, Vries, B. de, Vries, B. de, and Vries, B. de
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- 2011
19. Participate or observe? Effects of economic classroom experiments on students’ economic literacy
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Grol, R.F., Sent, E.-M., Vries, B. de, Grol, R.F., Sent, E.-M., and Vries, B. de
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6 februari 2016, Contains fulltext : 176743pub.pdf (publisher's version ) (Closed access), Economic classroom experiments are controlled interactive learning exercises targeting the comprehension of economic concepts in an inductive way. Aiming at increasing students’ knowledge of economic concepts, two types of economic classroom experiments are examined in a sample of 134 secondary school students. In the interactive research condition, 44 students participate in a series of four experiments, whereas in the constructive condition, 49 students observe four videos showing peers engaged in similar experiments. The 41 students in the control condition attend four lessons based on the model of direct instruction. ANCOVAs and contrast analyses indicate that interactive learning from experiences in economic classroom experiments is beneficial for secondary school students’ knowledge of economic concepts. Reasons for this finding are elaborated on the basis of observed student activities, interactions, communication, and self-reported experiences.
- Published
- 2017
20. Computer face-matching technology using two-dimensional photographs accurately matches the facial gestalt of unrelated individuals with the same syndromic form of intellectual disability
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Dudding-Byth, Tracy, Baxter, Anne, Holliday, E.G., Hackett, A., O'Donnell, Sheridan, White, Susan M., Brunner, H.G., Vries, B. de, Koolen, D.A., Kleefstra, T., Brain, S.A.E., Lovell, Brian C., Dudding-Byth, Tracy, Baxter, Anne, Holliday, E.G., Hackett, A., O'Donnell, Sheridan, White, Susan M., Brunner, H.G., Vries, B. de, Koolen, D.A., Kleefstra, T., Brain, S.A.E., and Lovell, Brian C.
- Abstract
Contains fulltext : 181608.pdf (publisher's version ) (Open Access)
- Published
- 2017
21. Natuurbegraven in Nederland
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Vries, B. de, Haas, W. de, Vries, B. de, and Haas, W. de
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Sinds eind jaren negentig van de vorige eeuw zijn in Nederland ongeveer twintig natuurbegraafplaatsen geopend. Dit zijn begraafplaatsen en natuurgebieden waar de begraaffunctie en natuurfunctie naast elkaar staan. Maar bij elk nieuw initiatief ontstaat discussie. Voorstanders vinden dat natuurbegraven tegemoet komt aan een behoefte in de samenleving en vinden het een natuurvriendelijk alternatief. Tegenstanders zien die maatschappelijke behoefte niet en vinden natuurbegraven een niet-duurzame ingreep die afbreuk doet aan de natuur, het milieu en de beleving van natuurgebieden. In dit artikel beschrijven we de gebruikte voors en tegens van natuurbegraven. Vervolgens beschrijven we hoe het natuurbegraven zich in Nederland op dit moment manifesteert, en gaan we in op de effecten van natuurbegraven op landschap, milieu en natuur.
- Published
- 2017
22. Leif Manger on the frontier: space, vision, futures
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Kramsch, O.T., Naguib, N., Vries, B. de, Naguib, N., and Vries, B. de
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Shaping and Changing of Places and Spaces - Abstract
Contains fulltext : 86944.pdf (Publisher’s version ) (Closed access)
- Published
- 2010
23. Two novel SCNIA mutations identified in families with familial hemiplegic migraine
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Weller, C.M., Pelzer, N., Vries, B. de, Lopez, M.A., Fabregues, O. de, Pascual, J., Arroyo, M.A.R., Koelewijn, S.C., Stam, A.H., Haan, J., Ferrari, M.D., Terwindt, G.M., and Maagdenberg, A.M.J.M. van den
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ion channel defects ,familial hemiplegic migraine ,SCNIA gene ,Migraine - Published
- 2014
- Full Text
- View/download PDF
24. PRRT2 AND HEMIPLEGIC MIGRAINE: A COMPLEX ASSOCIATION
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Pelzer, N., Vries, B. de, Kamphorst, J.T., Vijfhuizen, L.S., Ferrari, M.D., Haan, J., Maagdenberg, A.M.J.M. van den, and Terwindt, G.M.
- Published
- 2014
25. The Koolen-de Vries syndrome: a phenotypic comparison of patients with a 17q21.31 microdeletion versus a KANSL1 sequence variant
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Koolen, D.A., Pfundt, R.P., Linda, K., Beunders, G., Veenstra-Knol, H.E., Conta, J.H., Fortuna, A.M., Gillessen-Kaesbach, G., Dugan, S., Halbach, S., Abdul-Rahman, O.A., Winesett, H.M., Chung, W.K., Dalton, M., Dimova, P.S., Mattina, T., Prescott, K., Zhang, H.Z., Saal, H.M., Hehir-Kwa, J.Y., Willemsen, M.H., Ockeloen, C.W., Jongmans, M.C.J., Van der Aa, N., Failla, P., Barone, C., Avola, E., Brooks, A.S., Kant, S.G., Gerkes, E.H., Firth, H.V., Ounap, K., Bird, L.M., Masser-Frye, D., Friedman, J.R., Sokunbi, M.A., Dixit, A., Splitt, M., Kukolich, M.K., McGaughran, J., Coe, B.P., Florez, J., Nadif Kasri, N., Brunner, H.G., Thompson, E.M., Gecz, J., Romano, C, Eichler, E.E., Vries, B. de, Koolen, D.A., Pfundt, R.P., Linda, K., Beunders, G., Veenstra-Knol, H.E., Conta, J.H., Fortuna, A.M., Gillessen-Kaesbach, G., Dugan, S., Halbach, S., Abdul-Rahman, O.A., Winesett, H.M., Chung, W.K., Dalton, M., Dimova, P.S., Mattina, T., Prescott, K., Zhang, H.Z., Saal, H.M., Hehir-Kwa, J.Y., Willemsen, M.H., Ockeloen, C.W., Jongmans, M.C.J., Van der Aa, N., Failla, P., Barone, C., Avola, E., Brooks, A.S., Kant, S.G., Gerkes, E.H., Firth, H.V., Ounap, K., Bird, L.M., Masser-Frye, D., Friedman, J.R., Sokunbi, M.A., Dixit, A., Splitt, M., Kukolich, M.K., McGaughran, J., Coe, B.P., Florez, J., Nadif Kasri, N., Brunner, H.G., Thompson, E.M., Gecz, J., Romano, C, Eichler, E.E., and Vries, B. de
- Abstract
Contains fulltext : 168191.pdf (publisher's version ) (Closed access), The Koolen-de Vries syndrome (KdVS; OMIM #610443), also known as the 17q21.31 microdeletion syndrome, is a clinically heterogeneous disorder characterised by (neonatal) hypotonia, developmental delay, moderate intellectual disability, and characteristic facial dysmorphism. Expressive language development is particularly impaired compared with receptive language or motor skills. Other frequently reported features include social and friendly behaviour, epilepsy, musculoskeletal anomalies, congenital heart defects, urogenital malformations, and ectodermal anomalies. The syndrome is caused by a truncating variant in the KAT8 regulatory NSL complex unit 1 (KANSL1) gene or by a 17q21.31 microdeletion encompassing KANSL1. Herein we describe a novel cohort of 45 individuals with KdVS of whom 33 have a 17q21.31 microdeletion and 12 a single-nucleotide variant (SNV) in KANSL1 (19 males, 26 females; age range 7 months to 50 years). We provide guidance about the potential pitfalls in the laboratory testing and emphasise the challenges of KANSL1 variant calling and DNA copy number analysis in the complex 17q21.31 region. Moreover, we present detailed phenotypic information, including neuropsychological features, that contribute to the broad phenotypic spectrum of the syndrome. Comparison of the phenotype of both the microdeletion and SNV patients does not show differences of clinical importance, stressing that haploinsufficiency of KANSL1 is sufficient to cause the full KdVS phenotype.
- Published
- 2016
26. Effects of economic classroom experiments on economic knowledge and reasoning in secondary education
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Grol, R.F., Sent, E.-M., Vries, B. de, Grol, R.F., Sent, E.-M., and Vries, B. de
- Abstract
Contains fulltext : 176747pub.pdf (publisher's version ) (Closed access), This study explored whether and how economic classroom experiments may enhance the economic knowledge and the reasoning ability of 108 secondary school students. Economic classroom experiments are controlled interactive learning exercises by means of which students can learn to think as economists. Economic reasoning is conceptualized as the ability to identify a correct cause-and-effect relationship between variables. Students formulate an initial hypothesis by indicating two main variables from an economic context, determining associations between these, and formulating possible explanations. Subsequently, students test their hypothesis and try to establish the accuracy of their initial ideas. From the economic classroom experiments used in the study, students have to derive key variables, determine how these variables were related, and provide explanations. The goal of the study is to investigate whether actually participating in economic classroom experiments (n = 36) is more beneficial to learning than either watching others perform economic classroom experiments (n = 27) or merely analyzing the data produced by other students within such experiments (n = 45). Contrary to expectations, students who observe experiments and students who analyze experimental data show higher and sustained gains in their knowledge of economic concepts than students who participate in the experiments. Moreover, experiment participation turns out to be less beneficial for the reasoning-ability of students than video observation and data analysis. Possible explanations for these findings are discussed.
- Published
- 2016
27. Clinical delineation of the PACS1-related syndrome--Report on 19 patients
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Schuurs-Hoeijmakers, J.H.M., Landsverk, M.L., Foulds, N., Kukolich, M.K., Gavrilova, R.H., Greville-Heygate, S., Hanson-Kahn, A., Bernstein, J.A., Glass, J., Chitayat, D., Burrow, T.A., Husami, A., Collins, K., Wusik, K., Aa, N. van der, Kooy, F., Brown, K.T., Gadzicki, D., Kini, U., Alvarez, S., Fernandez-Jaen, A., McGehee, F., Selby, K., Tarailo-Graovac, M., Allen, M., Karnebeek, C.D. van, Stavropoulos, D.J., Marshall, C.R., Merico, D., Gregor, A., Zweier, C., Hopkin, R.J., Chu, Y.W., Chung, B.H., Vries, B. de, Devriendt, K., Hurles, M.E., Brunner, H.G., Schuurs-Hoeijmakers, J.H.M., Landsverk, M.L., Foulds, N., Kukolich, M.K., Gavrilova, R.H., Greville-Heygate, S., Hanson-Kahn, A., Bernstein, J.A., Glass, J., Chitayat, D., Burrow, T.A., Husami, A., Collins, K., Wusik, K., Aa, N. van der, Kooy, F., Brown, K.T., Gadzicki, D., Kini, U., Alvarez, S., Fernandez-Jaen, A., McGehee, F., Selby, K., Tarailo-Graovac, M., Allen, M., Karnebeek, C.D. van, Stavropoulos, D.J., Marshall, C.R., Merico, D., Gregor, A., Zweier, C., Hopkin, R.J., Chu, Y.W., Chung, B.H., Vries, B. de, Devriendt, K., Hurles, M.E., and Brunner, H.G.
- Abstract
Contains fulltext : 167655.pdf (publisher's version ) (Closed access), We report on 19 individuals with a recurrent de novo c.607C>T mutation in PACS1. This specific mutation gives rise to a recognizable intellectual disability syndrome. There is a distinctive facial appearance (19/19), characterized by full and arched eyebrows, hypertelorism with downslanting palpebral fissures, long eye lashes, ptosis, low set and simple ears, bulbous nasal tip, wide mouth with downturned corners and a thin upper lip with an unusual "wavy" profile, flat philtrum, and diastema of the teeth. Intellectual disability, ranging from mild to moderate, was present in all. Hypotonia is common in infancy (8/19). Seizures are frequent (12/19) and respond well to anticonvulsive medication. Structural malformations are common, including heart (10/19), brain (12/16), eye (10/19), kidney (3/19), and cryptorchidism (6/12 males). Feeding dysfunction is presenting in infancy with failure to thrive (5/19), gastroesophageal reflux (6/19), and gastrostomy tube placement (4/19). There is persistence of oral motor dysfunction. We provide suggestions for clinical work-up and management and hope that the present study will facilitate clinical recognition of further cases.
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- 2016
28. Risk of regional recurrence in triple-negative breast cancer patients: a Dutch cohort study
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Roozendaal, L.M. van, Smit, L.H., Duijsens, G.H., Vries, B. de, Siesling, S., Lobbes, M.B., Boer, M. de, Wilt, J.H.W. de, Smidt, M.L., Roozendaal, L.M. van, Smit, L.H., Duijsens, G.H., Vries, B. de, Siesling, S., Lobbes, M.B., Boer, M. de, Wilt, J.H.W. de, and Smidt, M.L.
- Abstract
Contains fulltext : 171436.pdf (publisher's version ) (Open Access), Triple-negative breast cancer is associated with early recurrence and low survival rates. Several trials investigate the safety of a more conservative approach of axillary treatment in clinically T1-2N0 breast cancer. Triple-negative breast cancer comprises only 15 % of newly diagnosed breast cancers, which might result in insufficient power for representative results for this subgroup. We aimed to provide a nationwide overview on the occurrence of (regional) recurrences in triple-negative breast cancer patients with a clinically T1-2N0 status. For this cohort study, 2548 women diagnosed between 2005 and 2008 with clinically T1-2N0 triple-negative breast cancer were selected from the Netherlands Cancer Registry. Follow-up data until 2014 were analyzed using Kaplan-Meier. Sentinel lymph node biopsy was performed in 2486 patients, and (completion) axillary lymph node dissection in 562 patients. Final pathologic nodal status was pN0 in 78.5 %, pN1mi in 4.5 %, pN1 in 12.3 %, pN2-3 in 3.6 %, and pNx in 1.1 %. During a follow-up of 5 years, regional recurrence occurred in 2.9 %, local recurrence in 4.2 % and distant recurrence in 12.2 %. Five-year disease-free survival was 78.7 %, distant disease-free survival 80.5 %, and 5-year overall survival 82.3 %. Triple-negative clinically T1-2N0 breast cancer patients rarely develop a regional recurrence. Their disease-free survival is more threatened by distant recurrence, affecting their overall survival. Consequently, it seems justified to include triple-negative breast cancer patients in randomized controlled trials investigating the safety of minimizing axillary staging and treatment.
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- 2016
29. Ultrasound is at least as good as magnetic resonance imaging in predicting tumour size post-neoadjuvant chemotherapy in breast cancer
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Vriens, B.E., Vries, B. de, Lobbes, M.B., Gastel, S.M. van, Berkmortel, F.W. van den, Smilde, T.J., Warmerdam, L.J. van, Boer, M. de, Spronsen, D.J. van, Smidt, M.L., Peer, P.G., Aarts, M.J., Tjan-Heijnen, V.C., Vriens, B.E., Vries, B. de, Lobbes, M.B., Gastel, S.M. van, Berkmortel, F.W. van den, Smilde, T.J., Warmerdam, L.J. van, Boer, M. de, Spronsen, D.J. van, Smidt, M.L., Peer, P.G., Aarts, M.J., and Tjan-Heijnen, V.C.
- Abstract
Item does not contain fulltext, BACKGROUND: The aim of this study was to evaluate the accuracy of clinical imaging of the primary breast tumour post-neoadjuvant chemotherapy (NAC) related to the post-neoadjuvant histological tumour size (gold standard) and whether this varies with breast cancer subtype. In this study, results of both magnetic resonance imaging (MRI) and ultrasound (US) were reported. METHODS: Patients with invasive breast cancer were enrolled in the INTENS study between 2006 and 2009. We included 182 patients, of whom data were available for post-NAC MRI (n=155), US (n=123), and histopathological tumour size. RESULTS: MRI estimated residual tumour size with <10-mm discordance in 54% of patients, overestimated size in 28% and underestimated size in 18% of patients. With US, this was 63%, 20% and 17%, respectively. The negative predictive value in hormone receptor-positive tumours for both MRI and US was low, 26% and 33%, respectively. The median deviation in clinical tumour size as percentage of pathological tumour was 63% (P25=26, P75=100) and 49% (P25=22, P75=100) for MRI and US, respectively (P=0.06). CONCLUSIONS: In this study, US was at least as good as breast MRI in providing information on residual tumour size post-neoadjuvant chemotherapy. However, both modalities suffered from a substantial percentage of over- and underestimation of tumour size and in addition both showed a low negative predictive value of pathologic complete remission (Gov nr: NCT00314977).
- Published
- 2016
30. Investigating Economic Classroom Experiments. How economic classroom experiments can support the economic literacy of students in secondary education
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Sent, E.-M., Vries, B. de, Grol, R.F., Sent, E.-M., Vries, B. de, and Grol, R.F.
- Abstract
Radboud Universiteit Nijmegen, 24 februari 2016, Promotor : Sent, E.-M. Co-promotor : Vries, B. de, Contains fulltext : 151095.pdf (publisher's version ) (Open Access)
- Published
- 2016
31. Is PRRT2 the Fourth Hemiplegic Migraine Gene?
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Pelzer, N., Vries, B. de, Kamphorst, J.T., Vijfhuizen, L.S., Ferrari, M.D., Terwindt, G.M., Haan, J., and Maagdenberg, A.M.J.M. van den
- Published
- 2013
32. Genetic Susceptibility in High-Frequent Migraineurs - A Report from LUMINA
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Pelzer, N., Louter, M.A., Haan, J., Vries, B. de, Maagdenberg, A.M.J.M. van den, Ferrari, M.D., and Terwindt, G.M.
- Published
- 2013
33. Doxorubicin/cyclophosphamide with concurrent versus sequential docetaxel as neoadjuvant treatment in patients with breast cancer
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Vriens, B.E., Aarts, M.J., Vries, B. de, Gastel, S.M. van, Wals, J., Smilde, T.J., Warmerdam, L.J. van, Boer, M. de, Spronsen, D.J. van, Borm, G.F., Tjan-Heijnen, V.C., Stienen, J.J.C., Hermens, R.P.M.G., Wennekes, L., Schans, S.A. van de, Dekker, H.M., Blijlevens, N.M.A., Maazen, R.W.M. van der, Adang, E.M.M., Krieken, J.H.J.M. van, Ottevanger, P.B., Promovendi ODB, Interne Geneeskunde, MUMC+: MA Medische Oncologie (9), Pathologie, and RS: GROW - School for Oncology and Reproduction
- Subjects
Oncology ,Invasive mycoses and compromised host Translational research [N4i 2] ,Adult ,Cancer Research ,medicine.medical_specialty ,Cyclophosphamide ,Adolescent ,medicine.medical_treatment ,Quality of nursing and allied health care [NCEBP 6] ,Breast Neoplasms ,Aetiology, screening and detection [ONCOL 5] ,Docetaxel ,Neoadjuvant chemotherapy ,Disease-Free Survival ,Drug Administration Schedule ,Young Adult ,Breast cancer ,Translational research [ONCOL 3] ,Internal medicine ,Evaluation of complex medical interventionsQuality of Care [NCEBP 2] ,Antineoplastic Combined Chemotherapy Protocols ,Medicine ,Humans ,Survival rate ,Neoadjuvant therapy ,Aged ,Chemotherapy ,business.industry ,Cumulative dose ,Effective primary care and public health [NCEBP 7] ,Middle Aged ,medicine.disease ,Translational research Tissue engineering and pathology [ONCOL 3] ,Neoadjuvant Therapy ,Survival Rate ,Chemotherapy, Adjuvant ,Doxorubicin ,Quality of hospital and integrated care Quality of Care [NCEBP 4] ,Female ,Taxoids ,business ,Quality of hospital and integrated care [NCEBP 4] ,Febrile neutropenia ,medicine.drug ,Quality of Care Quality of hospital and integrated care [ONCOL 4] - Abstract
Contains fulltext : 127295.pdf (Publisher’s version ) (Closed access) Abstract BACKGROUND: This study was designed to determine whether delivering neo-adjuvant chemotherapy at a higher dose in a shorter period of time improves outcome of breast cancer patients. PATIENTS AND METHODS: Women with newly diagnosed breast cancer were randomly assigned to neoadjuvant chemotherapy of four cycles of doxorubicin and cyclophosphamide followed by four cycles of docetaxel (AC 60/600 - T 100mg/m(2)) or six cycles of TAC (75/50/500mg/m(2)) every 3 weeks. The primary endpoint was the pathologic complete response (pCR) rate, defined as no invasive tumour present in the breast. RESULTS: In total, 201 patients were included. Baseline characteristics were well balanced. AC-T resulted in pCR in 21% and TAC in 16% of patients (odds ratio 1.44 (95% confidence interval (CI) 0.67-3.10). AC-T without primary granulocyte-colony stimulating factor (G-CSF) prophylaxis was associated with more febrile neutropenia compared to TAC with primary G-CSF prophylaxis (23% versus 9%), and with more grade 3/4 sensory neuropathy (5% versus 0%). CONCLUSIONS: With a higher cumulative dose for the concurrent arm, no differences were observed between the two treatment arms with respect to pCR rate. The differential toxicity profile could partly be explained by different use of primary G-CSF prophylaxis. Copyright © 2013 Elsevier Ltd. All rights reserved. KEYWORDS: Breast cancer, Cyclophosphamide, Docetaxel, Doxorubicin, Neoadjuvant chemotherapy
- Published
- 2013
34. Uncertainty assessment of the IMAGE/TIMER B1 CO2 emissions scenario, using the NUSAP method
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Sluijs JP, Potting J, Risbey J, Vuuren D van, Vries B de, Beusen A, Quintana SC, Funtowicz S, Heuberger P, Kloprogge P, Nuijten D, Petersen A, Ravetz J, and NOP
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modelling ,modellen onderzoek ,energie ,assessment ,emissions ,emissies ,image ,toetsing ,timer ,energy - Abstract
niet beschikbaar
- Published
- 2012
35. Land Use, Climate and Biogeochemical Cycles: Feedbacks and Options for Emission Reduction
- Author
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Hutjes RWA, Dolman AJ, Nabuurs GJ, Schelhaas MJ, Maat HW ter, Kabat P, Moors E, Huygen J, Haarsma R, Ronda R, Schaeffer M, Opsteegh JD, Leemans R, Bouwman L, Busch G, Eickhout B, Kreileman E, Strengers B, Vries B de, Verhagen A, Vleeshouwers, Corre WJ, Jongschaap REE, Kruseman G, Ierland E van, Holtslag AAM, Willemsen F, Dorland C, Tol RSJ van, and NOP
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biogeochemistry ,grondgebruik ,land use ,klimaatverandering ,emission reduction ,emissievermindering ,biogeochemie ,climatic changes - Abstract
niet beschikbaar
- Published
- 2012
36. The Targets/IMage Energy (TIME) 1.0 Model
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Vries B de, Wijngaart RA van den, and MNV
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model ,brandstof ,energie ,fuels ,mondiaal ,simulation ,global ,simulatie ,energy - Abstract
Betreft een technische documentatie van de vijf deelmodellen van het Targets/IMage Energy (TIME) 1.0 model. Energy Demand, Liquid Fuel (LF), Gaseous Fuel (GF), Solid Fuel (SF) en Electric Power Generation (EPG) worden gedetailleerd beschreven. Tevens zijn enkele resultaten van modelkalibratie voor de wereld 1900-1990 opgenomen.
- Published
- 2012
37. SusClime: a simulation game on population and development in a resource- and climate-constrained two-country world
- Author
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Vries B de and CWM
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simulatiespel ,klimaatverandering ,energievoorziening - Abstract
In dit rapport wordt het simulatiespel SusClime geintroduceerd als een manier om de lange-termijn toekomst te verkennen. De modelwereld van SusClime is een eenvoudige wereld met twee kapitaalvoorraden, een die goederen produceert (goods producing capital) en een die aan mensen diensten verleent waaronder consumpties (population capital). De vereiste energie wordt geleverd door twee kapitaalvoorraden, waarvan er een is gebaseerd op olie (carbon energy) en een hernieuwde bron (alternative). Investeringen in energiebesparing verminderen de energievraag. De belangrijke beslissingen in het spel betreffen investeringen, namelijk, de verdeling van geproduceerde goederen over deze vijf kapitaalvoorraden. Bovendien kunnen de twee landen olie verhandelen en leningen sluiten. De uitdaging is om door de demografische transitie heen te geraken door de welvaart per persoon te doen toenemen en om de overgang te maken van olie naar vernieuwbare energiebronnen. Dit laatste is van belang om te verhinderen dat de economie negatieve gevolgen ondervindt van klimaatverandering als gevolg van stijgende CO2-concentraties. Na de beschrijving van het spel volgen enkele suggestie om systematisch experimenten te doen en op die wijze een beter begrip te krijgen van de manieren waarop culturele waarden de waarneming van mensen en hun gedrag inzake aspecten van duurzame ontwikkeling beinvloeden.
- Published
- 2012
38. Targets IMage Energy Regional (TIMER) Model, Technical Documentation
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Vries B de, Vuuren D van, Elzen M den, Janssen M, and MNV
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modelling ,energy saving ,fuels ,greenhouse gases ,emission ,modellenonderzoek ,energiebesparing ,emissies ,broeikasgassen ,brandstoffen - Abstract
Er wordt een gedetailleerde beschrijving gegeven van het Targets IMage Energy Regional (TIMER) simulatiemodel. Het model is ontwikkeld en toegepast in nauwe relatie met het Integrated Model to Assess the Global Environment (IMAGE) 2.1-2.2. . Het TIMER model is een systeem-dynamisch simulatiemodel van het wereld-energiesysteem op een intermediair aggregatieniveau. Het model kan zowel als afzonderlijk model alsook geintegreerd met het IMAGE 2.2 modelkader worden gebruikt. Het model simuleert de wereld op basis van 17 regio's. De belangrijkste doelstellingen van het TIMER model zijn het analyseren van de lange-termijn dynamica van energiebesparing en de overgang naar niet-fossiele brandstoffen in een geintegreerd modelkader, en het verkennen van de lange-termijn trends inzake energie-gelieerde broeikasgas-emissies. Belangrijke ingredienten van de diverse deelmodellen zijn: prijsgedreven brandstof en technologie substitutieprocessen, kostendaling als gevolg van accumulerende produktie ('learning-by-doing'), hulpbron uitputting als een functie van cumulatief gebruik (lange-termijn kosten-aanbodcurves) en prijsgedreven brandstofhandel.
- Published
- 2012
39. Projections of multi-gas emissions and carbon sinks, and marginal abatement cost functions modelling for land-use related sources
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Graveland C, Bouwman AF, Vries B de, Eickhout B, Strengers BJ, and MNV
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mac ,mac curve ,costs ,non-co2 ,mitigation ,policy option ,cost ,ghg ,sewage ,emission reduction measure ,waste ,wastewater ,abatement cost ,agriculture ,baseline scenario ,ch4 ,nitrous oxide ,sinks ,methane ,carbon ,landuse ,measures ,n2o ,sequestration ,scenario ,greenhouse gas - Abstract
Dit rapport presenteert de schatting van kosten voor de bestrijding van broeikasgasemissies. Het gaat daarbij om de emissies van methaan (CH4) bij vuilstortplaatsen en van methaan (CH4) en lachgas (N2O) bij afvalwaterbehandeling. Tevens worden de kosten geschat van koolstofvastlegging in bos- of koolstofplantages. Dit gebeurt met behulp van zogenaamde marginale kostencurves. Het potentieel van de emissiereductie is gebaseerd op het GECS basisscenario voor landbouw en landgebruik in de periode van 1995 - 2030 zoals dat is ontwikkeld met het IMAGE 2.2 model. De kostensoorten van de verschillende maatregelen voor emissiereductie zijn: investeringskosten, operationele kosten en ook eventuele opbrengsten. Deze kosten en opbrengsten varieren op basis van regionale schattingen van kosten voor investeringen en arbeid en besparingen en opbrengsten. In het GECS baseline scenario stijgen de emissies afkomstig van vuilstortplaatsen en afvalwater in vrijwel alle wereldregio's tussen 1995 en 2030 als gevolg van de snelle bevolkingsgroei en urbanisatie. Door de toenemende emissie stijgt ook het reductiepotentieel aanzienlijk. Voor het schatten van de graad van implementatie van maatregelen zijn er aannames gebruikt op basis van literatuur gegevens. De kostensoorten die worden onderscheiden bij de koolstofvastlegging in plantages zijn de kosten voor land, het kweken van de bomen, grondbewerking, plantkosten en de jaarlijks terugkerende onderhouds- en operationele kosten. Door het combineren van de berekende jaarkosten per hectare voor elke regio met de gemiddelde jaarlijkse koolstofvastlegging per hectare worden de kosten van de koolstofvastlegging verkregen. De kosten zijn berekend als een gemiddelde over een periode van 50 jaar. De voormalige Sovjet Unie heeft met afstand het grootste potentieel voor koolstofvastlegging, tegen ook nog lage kosten. De resultaten bij veronderstelling van 100% implementatie geven het volledige potentieel weer, terwijl resultaten bij de lagere implementatie graad aangeven wat het effect zou kunnen zijn van sociaal-economische en andere barri{res die realisatie van bosaanplant voor koolstofvastlegging verhinderen. De marginale kostencurves die zijn ontwikkeld, kunnen niet zomaar worden gebruikt in combinatie met andere dan het GECS baseline scenario, omdat zowel de potentiele emissiereductie als de graad van implementatie van maatregelen aangepast dienen te worden aan de specifieke scenariocontext. De marginale kostencurves ontwikkeld in deze studie en in andere zogenaamde 'bottum-up' kosten studies zijn discontinue omdat wordt aangenomen dat ze een voor een worden geimplementeerd op basis van hun kosteneffectiviteit.
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- 2012
40. Genome-wide association study reveals three susceptibility loci for common migraine in the general population
- Author
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Chasman, D.I., Schurks, M., Anttila, V., Vries, B. de, Schminke, U., Launer, L.J., Terwindt, G.M., Maagdenberg, A.M.J.M. van den, Fendrich, K., Volzke, H., Ernst, F., Griffiths, L.R., Buring, J.E., Kallela, M., Freilinger, T., Kubisch, C., Ridker, P.M., Palotie, A., Ferrari, M.D., Hoffmann, W., Zee, R.Y.L., Kurth, T., and IHGC
- Published
- 2011
41. Migraine Genes and the Relation to Gender
- Author
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Shyti, R., Vries, B. de, and Maagdenberg, A. van den
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gender ,cortical spreading depression ,migraine ,glutamate ,transgenic mice - Published
- 2011
- Full Text
- View/download PDF
42. The evolving genetic and pathophysiological spectrum of migraine
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Vries, B. de, Ferrari, M.D., Frants, R.R., Maagdenberg, A.M.J.M. van den, and Leiden University
- Subjects
Genetic ,TREX1 ,Complex ,Mutation ,ATP1A2 ,SCN1A ,CACNA1A ,Gene ,Migraine - Abstract
The research in this thesis was aimed at identifying and characterizing novel migraine gene mutations and pathways. Several FHM and non-FHM genes were investigated in patients with monogenic familial hemiplegic migraine or other monogenic disorders in which migraine can be prevalent. Functional consequences of these mutations and the clinical phenotypes associated with them were investigated. Common migraine with a complex genetic background was studied using a genome-wide association analysis in an isolated population and with a meta-analysis study. Furthermore, FHM1 mice were used to study expression profiles in brain tissues that are relevant for the induction of cortical spreading depression ___ underlying the migraine aura - (i.e., the occipital cortex) and cerebellar ataxia (i.e., the cerebellum). These studies will further our insight in the molecular pathophysiology of migraine.
- Published
- 2011
43. A novel SLC2A1 mutation linking hemiplegic migraine with alternating hemiplegia of childhood
- Author
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Weller, C.M., Leen, W.G., Neville, B.G., Duncan, J.S., Vries, B. de, Geilenkirchen, M.A., Haan, J., Kamsteeg, E.J., Ferrari, M.D., Maagdenberg, A.M. van den, Willemsen, M.A., Scheffer, H., Terwindt, G.M., Weller, C.M., Leen, W.G., Neville, B.G., Duncan, J.S., Vries, B. de, Geilenkirchen, M.A., Haan, J., Kamsteeg, E.J., Ferrari, M.D., Maagdenberg, A.M. van den, Willemsen, M.A., Scheffer, H., and Terwindt, G.M.
- Abstract
Item does not contain fulltext, BACKGROUND: Hemiplegic migraine (HM) and alternating hemiplegia of childhood (AHC) are rare episodic neurological brain disorders with partial clinical and genetic overlap. Recently, ATP1A3 mutations were shown to account for the majority of AHC patients. In addition, a mutation in the SLC2A1 gene was reported in a patient with atypical AHC. We therefore investigated whether mutations in these genes may also be involved in HM. Furthermore, we studied the role of SLC2A1 mutations in a small set of AHC patients without ATP1A3 mutations. METHODS: We screened 42 HM patients (21 familial and 21 sporadic patients) for ATP1A3 and SLC2A1 mutations. In addition, four typical AHC patients and one atypical patient with overlapping symptoms of both disorders were screened for SLC2A1 mutations. RESULTS: A pathogenic de novo SLC2A1 mutation (p.Gly18Arg) was found in the atypical patient with overlapping symptoms of AHC and hemiplegic migraine. No mutations were found in the HM and the other AHC patients. CONCLUSION: Screening for a mutation in the SLC2A1 gene should be considered in patients with a complex phenotype with overlapping symptoms of hemiplegic migraine and AHC.
- Published
- 2015
44. The clustering of functionally related genes contributes to CNV-mediated disease
- Author
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Andrews, T., Honti, F., Pfundt, R.P., Leeuw, N. de, Hehir, J.Y., Vulto-van Silfhout, A.T., Vries, B. de, Webber, C., Andrews, T., Honti, F., Pfundt, R.P., Leeuw, N. de, Hehir, J.Y., Vulto-van Silfhout, A.T., Vries, B. de, and Webber, C.
- Abstract
Contains fulltext : 154153.pdf (publisher's version ) (Open Access), Clusters of functionally related genes can be disrupted by a single copy number variant (CNV). We demonstrate that the simultaneous disruption of multiple functionally related genes is a frequent and significant characteristic of de novo CNVs in patients with developmental disorders (P = 1 x 10(-3)). Using three different functional networks, we identified unexpectedly large numbers of functionally related genes within de novo CNVs from two large independent cohorts of individuals with developmental disorders. The presence of multiple functionally related genes was a significant predictor of a CNV's pathogenicity when compared to CNVs from apparently healthy individuals and a better predictor than the presence of known disease or haploinsufficient genes for larger CNVs. The functionally related genes found in the de novo CNVs belonged to 70% of all clusters of functionally related genes found across the genome. De novo CNVs were more likely to affect functional clusters and affect them to a greater extent than benign CNVs (P = 6 x 10(-4)). Furthermore, such clusters of functionally related genes are phenotypically informative: Different patients possessing CNVs that affect the same cluster of functionally related genes exhibit more similar phenotypes than expected (P < 0.05). The spanning of multiple functionally similar genes by single CNVs contributes substantially to how these variants exert their pathogenic effects.
- Published
- 2015
45. Recurrent Mutations in the Basic Domain of TWIST2 Cause Ablepharon Macrostomia and Barber-Say Syndromes
- Author
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Marchegiani, S., Davis, T., Tessadori, F., Haaften, G. van, Brancati, F., Hoischen, A., Huang, H., Valkanas, E., Pusey, B., Schanze, D., Venselaar, H., Vulto-van Silfhout, A.T., Wolfe, L.A., Tifft, C.J., Zerfas, P.M., Zambruno, G., Kariminejad, A., Sabbagh-Kermani, F., Lee, J. van der, Tsokos, M.G., Lee, C.C., Ferraz, V., Silva, E.M. da, Stevens, C.A., Roche, N., Bartsch, O., Farndon, P., Bermejo-Sanchez, E., Brooks, B.P., Maduro, V., Dallapiccola, B., Ramos, F.J., Chung, H.Y., Caignec, C. Le, Martins, F., Jacyk, W.K., Mazzanti, L., Brunner, H.G., Bakkers, J., Lin, S., Malicdan, M.C., Boerkoel, C.F., Gahl, W.A., Vries, B. de, Haelst, M.M. van, Zenker, M., Markello, T.C., Marchegiani, S., Davis, T., Tessadori, F., Haaften, G. van, Brancati, F., Hoischen, A., Huang, H., Valkanas, E., Pusey, B., Schanze, D., Venselaar, H., Vulto-van Silfhout, A.T., Wolfe, L.A., Tifft, C.J., Zerfas, P.M., Zambruno, G., Kariminejad, A., Sabbagh-Kermani, F., Lee, J. van der, Tsokos, M.G., Lee, C.C., Ferraz, V., Silva, E.M. da, Stevens, C.A., Roche, N., Bartsch, O., Farndon, P., Bermejo-Sanchez, E., Brooks, B.P., Maduro, V., Dallapiccola, B., Ramos, F.J., Chung, H.Y., Caignec, C. Le, Martins, F., Jacyk, W.K., Mazzanti, L., Brunner, H.G., Bakkers, J., Lin, S., Malicdan, M.C., Boerkoel, C.F., Gahl, W.A., Vries, B. de, Haelst, M.M. van, Zenker, M., and Markello, T.C.
- Abstract
Contains fulltext : 153827.pdf (publisher's version ) (Closed access), Ablepharon macrostomia syndrome (AMS) and Barber-Say syndrome (BSS) are rare congenital ectodermal dysplasias characterized by similar clinical features. To establish the genetic basis of AMS and BSS, we performed extensive clinical phenotyping, whole exome and candidate gene sequencing, and functional validations. We identified a recurrent de novo mutation in TWIST2 in seven independent AMS-affected families, as well as another recurrent de novo mutation affecting the same amino acid in ten independent BSS-affected families. Moreover, a genotype-phenotype correlation was observed, because the two syndromes differed based solely upon the nature of the substituting amino acid: a lysine at TWIST2 residue 75 resulted in AMS, whereas a glutamine or alanine yielded BSS. TWIST2 encodes a basic helix-loop-helix transcription factor that regulates the development of mesenchymal tissues. All identified mutations fell in the basic domain of TWIST2 and altered the DNA-binding pattern of Flag-TWIST2 in HeLa cells. Comparison of wild-type and mutant TWIST2 expressed in zebrafish identified abnormal developmental phenotypes and widespread transcriptome changes. Our results suggest that autosomal-dominant TWIST2 mutations cause AMS or BSS by inducing protean effects on the transcription factor's DNA binding.
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- 2015
46. Cerebral visual impairment and intellectual disability caused by PGAP1 variants
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Bosch, D.G., Boonstra, F.N., Kinoshita, T., Jhangiani, S., Ligt, J. de, Cremers, F.P.M., Lupski, J.R., Murakami, Y., Vries, B. de, Bosch, D.G., Boonstra, F.N., Kinoshita, T., Jhangiani, S., Ligt, J. de, Cremers, F.P.M., Lupski, J.R., Murakami, Y., and Vries, B. de
- Abstract
Item does not contain fulltext, Homozygous variants in PGAP1 (post-GPI attachment to proteins 1) have recently been identified in two families with developmental delay, seizures and/or spasticity. PGAP1 is a member of the glycosylphosphatidylinositol anchor biosynthesis and remodeling pathway and defects in this pathway are a subclass of congenital disorders of glycosylation. Here we performed whole-exome sequencing in an individual with cerebral visual impairment (CVI), intellectual disability (ID), and factor XII deficiency and revealed compound heterozygous variants in PGAP1, c.274_276del (p.(Pro92del)) and c.921_925del (p.(Lys308Asnfs*25)). Subsequently, PGAP1-deficient Chinese hamster ovary (CHO)-cell lines were transfected with either mutant or wild-type constructs and their sensitivity to phosphatidylinositol-specific phospholipase C (PI-PLC) treatment was measured. The mutant constructs could not rescue the PGAP1-deficient CHO cell lines resistance to PI-PLC treatment. In addition, lymphoblastoid cell lines (LCLs) of the affected individual showed no sensitivity to PI-PLC treatment, whereas the LCLs of the heterozygous carrier parents were partially resistant. In conclusion, we report novel PGAP1 variants in a boy with CVI and ID and a proven functional loss of PGAP1 and show, to our knowledge, for the first time this genetic association with CVI.
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- 2015
47. A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology
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Migliavacca, E., Golzio, C., Mannik, K., Blumenthal, I., Oh, E.C., Harewood, L., Kosmicki, J.A., Loviglio, M.N., Giannuzzi, G., Hippolyte, L., Maillard, A.M., Alfaiz, A.A., Haelst, M.M. van, Andrieux, J., Gusella, J.F., Daly, M.J., Beckmann, J.S., Jacquemont, S., Talkowski, M.E., Katsanis, N., Reymond, A., Vulto-van Silfhout, A.T., Vries, B. de, Binsbergen, E. van, et al., Migliavacca, E., Golzio, C., Mannik, K., Blumenthal, I., Oh, E.C., Harewood, L., Kosmicki, J.A., Loviglio, M.N., Giannuzzi, G., Hippolyte, L., Maillard, A.M., Alfaiz, A.A., Haelst, M.M. van, Andrieux, J., Gusella, J.F., Daly, M.J., Beckmann, J.S., Jacquemont, S., Talkowski, M.E., Katsanis, N., Reymond, A., Vulto-van Silfhout, A.T., Vries, B. de, Binsbergen, E. van, and et al.
- Abstract
Item does not contain fulltext, The 16p11.2 600 kb copy-number variants (CNVs) are associated with mirror phenotypes on BMI, head circumference, and brain volume and represent frequent genetic lesions in autism spectrum disorders (ASDs) and schizophrenia. Here we interrogated the transcriptome of individuals carrying reciprocal 16p11.2 CNVs. Transcript perturbations correlated with clinical endophenotypes and were enriched for genes associated with ASDs, abnormalities of head size, and ciliopathies. Ciliary gene expression was also perturbed in orthologous mouse models, raising the possibility that ciliary dysfunction contributes to 16p11.2 pathologies. In support of this hypothesis, we found structural ciliary defects in the CA1 hippocampal region of 16p11.2 duplication mice. Moreover, by using an established zebrafish model, we show genetic interaction between KCTD13, a key driver of the mirrored neuroanatomical phenotypes of the 16p11.2 CNV, and ciliopathy-associated genes. Overexpression of BBS7 rescues head size and neuroanatomical defects of kctd13 morphants, whereas suppression or overexpression of CEP290 rescues phenotypes induced by KCTD13 under- or overexpression, respectively. Our data suggest that dysregulation of ciliopathy genes contributes to the clinical phenotypes of these CNVs.
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- 2015
48. Heterozygous Loss-of-Function Mutations in DLL4 Cause Adams-Oliver Syndrome
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Meester, J.A., Southgate, L., Stittrich, A.B., Venselaar, H., Beekmans, S.J., Hollander, N. den, Bijlsma, E.K., Helderman-van den Enden, A.T., Verheij, J.B., Glusman, G., Roach, J.C., Lehman, A., Patel, M.S., Vries, B. de, Ruivenkamp, C., Itin, P., Prescott, K., Clarke, S., Trembath, R., Zenker, M., Sukalo, M., Laer, L. Van, Loeys, B.L., Wuyts, W., Meester, J.A., Southgate, L., Stittrich, A.B., Venselaar, H., Beekmans, S.J., Hollander, N. den, Bijlsma, E.K., Helderman-van den Enden, A.T., Verheij, J.B., Glusman, G., Roach, J.C., Lehman, A., Patel, M.S., Vries, B. de, Ruivenkamp, C., Itin, P., Prescott, K., Clarke, S., Trembath, R., Zenker, M., Sukalo, M., Laer, L. Van, Loeys, B.L., and Wuyts, W.
- Abstract
Contains fulltext : 152973.pdf (publisher's version ) (Closed access), Adams-Oliver syndrome (AOS) is a rare developmental disorder characterized by the presence of aplasia cutis congenita (ACC) of the scalp vertex and terminal limb-reduction defects. Cardiovascular anomalies are also frequently observed. Mutations in five genes have been identified as a cause for AOS prior to this report. Mutations in EOGT and DOCK6 cause autosomal-recessive AOS, whereas mutations in ARHGAP31, RBPJ, and NOTCH1 lead to autosomal-dominant AOS. Because RBPJ, NOTCH1, and EOGT are involved in NOTCH signaling, we hypothesized that mutations in other genes involved in this pathway might also be implicated in AOS pathogenesis. Using a candidate-gene-based approach, we prioritized DLL4, a critical NOTCH ligand, due to its essential role in vascular development in the context of cardiovascular features in AOS-affected individuals. Targeted resequencing of the DLL4 gene with a custom enrichment panel in 89 independent families resulted in the identification of seven mutations. A defect in DLL4 was also detected in two families via whole-exome or genome sequencing. In total, nine heterozygous mutations in DLL4 were identified, including two nonsense and seven missense variants, the latter encompassing four mutations that replace or create cysteine residues, which are most likely critical for maintaining structural integrity of the protein. Affected individuals with DLL4 mutations present with variable clinical expression with no emerging genotype-phenotype correlations. Our findings demonstrate that DLL4 mutations are an additional cause of autosomal-dominant AOS or isolated ACC and provide further evidence for a key role of NOTCH signaling in the etiology of this disorder.
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- 2015
49. Variants in CUL4B are associated with cerebral malformations
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Vulto-van Silfhout, A.T., Nakagawa, T., Bahi-Buisson, N., Haas, S.A., Hu, H, Bienek, M., Vissers, L.E.L.M., Gilissen, C.F.H.A., Tzschach, A., Busche, A., Musebeck, J., Rump, P., Mathijssen, I.B., Avela, K., Somer, M., Doagu, F., Philips, A.K., Rauch, A., Baumer, A., Voesenek, K.E.J., Poirier, K., Vigneron, J., Amram, D., Odent, S., Nawara, M., Obersztyn, E., Lenart, J., Charzewska, A., Lebrun, N., Fischer, U., Nillesen, W.M., Yntema, H.G., Jarvela, I., Ropers, H.H., Vries, B. de, Brunner, H.G., Bokhoven, H. van, Raymond, F.L., Willemsen, M.A.A.P., Chelly, J., Xiong, Y., Barkovich, A.J., Kalscheuer, V.M., Kleefstra, T., Brouwer, A.P.M. de, Vulto-van Silfhout, A.T., Nakagawa, T., Bahi-Buisson, N., Haas, S.A., Hu, H, Bienek, M., Vissers, L.E.L.M., Gilissen, C.F.H.A., Tzschach, A., Busche, A., Musebeck, J., Rump, P., Mathijssen, I.B., Avela, K., Somer, M., Doagu, F., Philips, A.K., Rauch, A., Baumer, A., Voesenek, K.E.J., Poirier, K., Vigneron, J., Amram, D., Odent, S., Nawara, M., Obersztyn, E., Lenart, J., Charzewska, A., Lebrun, N., Fischer, U., Nillesen, W.M., Yntema, H.G., Jarvela, I., Ropers, H.H., Vries, B. de, Brunner, H.G., Bokhoven, H. van, Raymond, F.L., Willemsen, M.A.A.P., Chelly, J., Xiong, Y., Barkovich, A.J., Kalscheuer, V.M., Kleefstra, T., and Brouwer, A.P.M. de
- Abstract
Item does not contain fulltext, Variants in cullin 4B (CUL4B) are a known cause of syndromic X-linked intellectual disability. Here, we describe an additional 25 patients from 11 families with variants in CUL4B. We identified nine different novel variants in these families and confirmed the pathogenicity of all nontruncating variants. Neuroimaging data, available for 15 patients, showed the presence of cerebral malformations in ten patients. The cerebral anomalies comprised malformations of cortical development (MCD), ventriculomegaly, and diminished white matter volume. The phenotypic heterogeneity of the cerebral malformations might result from the involvement of CUL-4B in various cellular pathways essential for normal brain development. Accordingly, we show that CUL-4B interacts with WDR62, a protein in which variants were previously identified in patients with microcephaly and a wide range of MCD. This interaction might contribute to the development of cerebral malformations in patients with variants in CUL4B.
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- 2015
50. Real-Life Use and Effectiveness of Adjuvant Trastuzumab in Early Breast Cancer Patients: A Study of the Southeast Netherlands Breast Cancer Consortium
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Seferina, S.C., Lobbezoo, D.J., Boer, M. de, Dercksen, M.W., Berkmortel, F. van den, Kampen, R.J. van, Wouw, A.J. van de, Vries, B. de, Joore, M.A., Peer, P.G., Voogd, A.C., Tjan-Heijnen, V.C., Seferina, S.C., Lobbezoo, D.J., Boer, M. de, Dercksen, M.W., Berkmortel, F. van den, Kampen, R.J. van, Wouw, A.J. van de, Vries, B. de, Joore, M.A., Peer, P.G., Voogd, A.C., and Tjan-Heijnen, V.C.
- Abstract
Item does not contain fulltext, BACKGROUND: The impact of drug prescriptions in real life as opposed to strict clinical trial prescription is only rarely assessed, although it is well recognized that incorrect use may harm patients and may have a significant impact on health care resources. We investigated the use and effectiveness of adjuvant trastuzumab in daily practice compared with the effectiveness in clinical trials. METHODS: We included all patients with stage I-III invasive breast cancer, irrespective of human epidermal growth factor receptor 2 (HER2) status, diagnosed in five hospitals in the southeast of The Netherlands in 2005-2007. We aimed to assess the actual use of adjuvant trastuzumab in early HER2-positive breast and its efficacy in daily practice. RESULTS: Of 2,684 patients included, 476 (17.7%) had a HER2-positive tumor. Of these, 251 (52.7%) patients had an indication for trastuzumab treatment of which 196 (78.1%) patients actually received it. Of the 225 patients without an indication, 34 (15.1%) received trastuzumab. Five-year disease-free survival was 80.7% for (n = 230) patients treated with versus 68.2% for (n = 246) patients not treated with trastuzumab (p = .0023), and 5-year overall survival rates were 90.7% and 77.4%, respectively (p = .0002). The hazard ratio for disease recurrence was 0.63 (95% confidence interval, 0.37-1.06) for trastuzumab when adjusting for potential confounders. CONCLUSION: This study shows that in real life, patients treated with trastuzumab in early-stage HER2-positive breast cancer had a 5-year disease-free and overall survival comparable to prior randomized trials. For informative decision making, real-life data are of additional value, providing insight on outcome of patients considered ineligible for treatment.
- Published
- 2015
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