35,971 results on '"WANG, Yun"'
Search Results
2. Nightscape, and: Fallen Cloud, and: Dreaming Cloud
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Wang, Yun
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- 2024
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3. Doing Tai Chi with "American Music"
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Wang, Yun Emily
- Published
- 2023
4. Probing blackbody components in gamma-ray bursts from black hole neutrino-dominated accretion flows
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Li, Xiao-Yan, Liu, Tong, Huang, Bao-Quan, Li, Guo-Yu, Lin, Da-Bin, Chen, Zhi-Lin, and Wang, Yun
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
A stellar-mass black hole (BH) surrounded by a neutrino-dominated accretion flow (NDAF) is generally considered to be the central engine of gamma-ray bursts (GRBs). Neutrinos escaping from the disk will annihilate out of the disk to produce the fireball that could power GRBs with blackbody (BB) components. The initial GRB jet power and fireball launch radius are related to the annihilation luminosity and annihilation height of the NDAFs, respectively. In this paper, we collect 7 GRBs with known redshifts and identified BB components to test whether the NDAF model works. We find that, in most cases, the values of the accretion rates and the central BH properties are all in the reasonable range, suggesting that these BB components indeed originate from the neutrino annihilation process., Comment: 8 pages, 1 table, 1 figure, accepted for publication in ApJ
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- 2024
5. The Mitochondrial Genome of Cathaya argyrophylla Reaches 18.99 Mb: Analysis of Super-Large Mitochondrial Genomes in Pinaceae
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Huang, Kerui, Xu, Wenbo, Hu, Haoliang, Jiang, Xiaolong, Sun, Lei, Zhao, Wenyan, Long, Binbin, Fan, Shaogang, Zhou, Zhibo, Mo, Ping, Jiang, Xiaocheng, Tian, Jianhong, Deng, Aihua, Xie, Peng, and Wang, Yun
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Quantitative Biology - Genomics - Abstract
Mitochondrial genomes in the Pinaceae family are notable for their large size and structural complexity. In this study, we sequenced and analyzed the mitochondrial genome of Cathaya argyrophylla, an endangered and endemic Pinaceae species, uncovering a genome size of 18.99 Mb, meaning the largest mitochondrial genome reported to date. To investigate the mechanisms behind this exceptional size, we conducted comparative analyses with other Pinaceae species possessing both large and small mitochondrial genomes, as well as with other gymnosperms. We focused on repeat sequences, transposable element activity, RNA editing events, chloroplast-derived sequence transfers (mtpts), and sequence homology with nuclear genomes. Our findings indicate that while Cathaya argyrophylla and other extremely large Pinaceae mitochondrial genomes contain substantial amounts of repeat sequences and show increased activity of LINEs and LTR retrotransposons, these factors alone do not fully account for the genome expansion. Notably, we observed a significant incorporation of chloroplast-derived sequences in Cathaya argyrophylla and other large mitochondrial genomes, suggesting that extensive plastid-to-mitochondrial DNA transfer may play a crucial role in genome enlargement. Additionally, large mitochondrial genomes exhibited distinct patterns of RNA editing and limited similarity with nuclear genomes compared to smaller genomes. These results suggest that the massive mitochondrial genomes in Pinaceae are likely the result of multiple contributing factors, including repeat sequences, transposon activity, and extensive plastid sequence incorporation. Our study enhances the understanding of mitochondrial genome evolution in plants and provides valuable genetic information for the conservation and study of Cathaya argyrophylla., Comment: 22 pages, 9 figures
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- 2024
6. Spotting structural defects in crystals from the topology of vibrational modes
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Huang, Long-Zhou, Wang, Yun-Jiang, and Baggioli, Matteo
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Condensed Matter - Materials Science ,Condensed Matter - Disordered Systems and Neural Networks ,Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Soft Condensed Matter - Abstract
Because of the inevitably disordered background, structural defects are not well-defined concepts in amorphous solids. In order to overcome this difficulty, it has been recently proposed that topological defects can be still identified in the pattern of vibrational modes, by looking at the corresponding eigenvector field at low frequency. Moreover, it has been verified that these defects strongly correlate with the location of soft spots in glasses, that are the regions more prone to plastic rearrangements. Here, we show that the topology of vibrational modes predicts the location of structural defects in crystals as well, including the cases of dislocations, disclinations and Eshelby inclusions. Our results suggest that in crystalline solids topological defects in the vibrational modes are directly connected to the well-established structural defects governing plastic deformations and present characteristics very similar to those observed in amorphous solids., Comment: v1: comments welcome
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- 2024
7. Narrative Player: Reviving Data Narratives with Visuals
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Shao, Zekai, Shen, Leixian, Li, Haotian, Shan, Yi, Qu, Huamin, Wang, Yun, and Chen, Siming
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Computer Science - Human-Computer Interaction - Abstract
Data-rich documents are commonly found across various fields such as business, finance, and science. However, a general limitation of these documents for reading is their reliance on text to convey data and facts. Visual representation of text aids in providing a satisfactory reading experience in comprehension and engagement. However, existing work emphasizes presenting the insights of local text context, rather than fully conveying data stories within the whole paragraphs and engaging readers. To provide readers with satisfactory data stories, this paper presents Narrative Player, a novel method that automatically revives data narratives with consistent and contextualized visuals. Specifically, it accepts a paragraph and corresponding data table as input and leverages LLMs to characterize the clauses and extract contextualized data facts. Subsequently, the facts are transformed into a coherent visualization sequence with a carefully designed optimization-based approach. Animations are also assigned between adjacent visualizations to enable seamless transitions. Finally, the visualization sequence, transition animations, and audio narration generated by text-to-speech technologies are rendered into a data video. The evaluation results showed that the automatic-generated data videos were well-received by participants and experts for enhancing reading., Comment: 11 pages, 7 figures
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- 2024
8. Data Playwright: Authoring Data Videos with Annotated Narration
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Shen, Leixian, Li, Haotian, Wang, Yun, Luo, Tianqi, Luo, Yuyu, and Qu, Huamin
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Computer Science - Human-Computer Interaction - Abstract
Creating data videos that effectively narrate stories with animated visuals requires substantial effort and expertise. A promising research trend is leveraging the easy-to-use natural language (NL) interaction to automatically synthesize data video components from narrative content like text narrations, or NL commands that specify user-required designs. Nevertheless, previous research has overlooked the integration of narrative content and specific design authoring commands, leading to generated results that lack customization or fail to seamlessly fit into the narrative context. To address these issues, we introduce a novel paradigm for creating data videos, which seamlessly integrates users' authoring and narrative intents in a unified format called annotated narration, allowing users to incorporate NL commands for design authoring as inline annotations within the narration text. Informed by a formative study on users' preference for annotated narration, we develop a prototype system named Data Playwright that embodies this paradigm for effective creation of data videos. Within Data Playwright, users can write annotated narration based on uploaded visualizations. The system's interpreter automatically understands users' inputs and synthesizes data videos with narration-animation interplay, powered by large language models. Finally, users can preview and fine-tune the video. A user study demonstrated that participants can effectively create data videos with Data Playwright by effortlessly articulating their desired outcomes through annotated narration., Comment: 11 pages, 7 figures, accepted by IEEE TVCG
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- 2024
9. fMRI-3D: A Comprehensive Dataset for Enhancing fMRI-based 3D Reconstruction
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Gao, Jianxiong, Fu, Yuqian, Wang, Yun, Qian, Xuelin, Feng, Jianfeng, and Fu, Yanwei
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Reconstructing 3D visuals from functional Magnetic Resonance Imaging (fMRI) data, introduced as Recon3DMind in our conference work, is of significant interest to both cognitive neuroscience and computer vision. To advance this task, we present the fMRI-3D dataset, which includes data from 15 participants and showcases a total of 4768 3D objects. The dataset comprises two components: fMRI-Shape, previously introduced and accessible at https://huggingface.co/datasets/Fudan-fMRI/fMRI-Shape, and fMRI-Objaverse, proposed in this paper and available at https://huggingface.co/datasets/Fudan-fMRI/fMRI-Objaverse. fMRI-Objaverse includes data from 5 subjects, 4 of whom are also part of the Core set in fMRI-Shape, with each subject viewing 3142 3D objects across 117 categories, all accompanied by text captions. This significantly enhances the diversity and potential applications of the dataset. Additionally, we propose MinD-3D, a novel framework designed to decode 3D visual information from fMRI signals. The framework first extracts and aggregates features from fMRI data using a neuro-fusion encoder, then employs a feature-bridge diffusion model to generate visual features, and finally reconstructs the 3D object using a generative transformer decoder. We establish new benchmarks by designing metrics at both semantic and structural levels to evaluate model performance. Furthermore, we assess our model's effectiveness in an Out-of-Distribution setting and analyze the attribution of the extracted features and the visual ROIs in fMRI signals. Our experiments demonstrate that MinD-3D not only reconstructs 3D objects with high semantic and spatial accuracy but also deepens our understanding of how human brain processes 3D visual information. Project page at: https://jianxgao.github.io/MinD-3D., Comment: Extended version of "MinD-3D: Reconstruct High-quality 3D objects in Human Brain", ECCV 2024 (arXiv: 2312.07485)
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- 2024
10. Quantum resource theory of coding for error correction
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Wang, Dong-Sheng, Liu, Yuan-Dong, Wang, Yun-Jiang, and Luo, Shunlong
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Quantum Physics - Abstract
Error-correction codes are central for fault-tolerant information processing. Here we develop a rigorous framework to describe various coding models based on quantum resource theory of superchannels. We find, by treating codings as superchannels, a hierarchy of coding models can be established, including the entanglement assisted or unassisted settings, and their local versions. We show that these coding models can be used to classify error-correction codes and accommodate different computation and communication settings depending on the data type, side channels, and pre-/postprocessing. We believe the coding hierarchy could also inspire new coding models and error-correction methods.
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- 2024
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11. Capturing primordial non-Gaussian signatures in the late Universe by multi-scale extrema of the cosmic log-density field
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Wang, Yun and He, Ping
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We construct two new summary statistics, the scale-dependent peak height function (scale-PKHF) and the scale-dependent valley depth function (scale-VLYDF), and forecast their constraining power on PNG amplitudes $\{f_\mathrm{NL}^\mathrm{local}, f_\mathrm{NL}^\mathrm{equil},f_\mathrm{NL}^\mathrm{ortho}\}$ and standard cosmological parameters based on ten thousands of density fields drawn from \textsc{Quijote} and \textsc{Quijote-PNG} simulations at $z=0$. With the Fisher analysis, we find that the scale-PKHF and scale-VLYDF are capable of capturing a wealth of primordial information about the Universe. Specifically, the constraint on the scalar spectral index $n_s$ obtained from the scale-VLYDF (scale-PKHF) is 12.4 (8.6) times tighter than that from the power spectrum, and 3.9 (2.7) times tighter than that from the bispectrum. The combination of the two statistics yields constraints on $\{f_\mathrm{NL}^\mathrm{local}, f_\mathrm{NL}^\mathrm{equil}\}$ similar to those from the bispectrum and power spectrum combination, but provides a 1.4-fold improvement in the constraint on $f_\mathrm{NL}^\mathrm{ortho}$. After including the power spectrum, its constraining power well exceeds that of the bispectrum and power spectrum combination by factors of 1.1--2.9 for all parameters., Comment: 7 pages, 4 figures, 1 table. Comments welcome and appreciated
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- 2024
12. HiMA: Hierarchical Quantum Microarchitecture for Qubit-Scaling and Quantum Process-Level Parallelism
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Zhou, Qi, Mei, Zi-Hao, Shi, Han-Qing, Guo, Liang-Liang, Yang, Xiao-Yan, Wang, Yun-Jie, Xu, Xiao-Fan, Xue, Cheng, Kong, Wei-Cheng, Wang, Jun-Chao, Wu, Yu-Chun, Chen, Zhao-Yun, and Guo, Guo-Ping
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Computer Science - Hardware Architecture ,Quantum Physics - Abstract
Quantum computing holds immense potential for addressing a myriad of intricate challenges, which is significantly amplified when scaled to thousands of qubits. However, a major challenge lies in developing an efficient and scalable quantum control system. To address this, we propose a novel Hierarchical MicroArchitecture (HiMA) designed to facilitate qubit scaling and exploit quantum process-level parallelism. This microarchitecture is based on three core elements: (i) discrete qubit-level drive and readout, (ii) a process-based hierarchical trigger mechanism, and (iii) multiprocessing with a staggered triggering technique to enable efficient quantum process-level parallelism. We implement HiMA as a control system for a 72-qubit tunable superconducting quantum processing unit, serving a public quantum cloud computing platform, which is capable of expanding to 6144 qubits through three-layer cascading. In our benchmarking tests, HiMA achieves up to a 4.89x speedup under a 5-process parallel configuration. Consequently, to the best of our knowledge, we have achieved the highest CLOPS (Circuit Layer Operations Per Second), reaching up to 43,680, across all publicly available platforms.
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- 2024
13. Microscopic origin of liquid viscosity from unstable localized modes
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Huang, Long-Zhou, Cui, Bingyu, Vaibhav, Vinay, Baggioli, Matteo, and Wang, Yun-Jiang
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Statistical Mechanics - Abstract
Viscosity is the resistance of a liquid to flow, governed by atomic-scale friction between its constituent atoms. While viscosity can be directly computed using the Green-Kubo formalism, this method does not fully elucidate the physical mechanisms underlying such momentum transport coefficient. In fact, the microscopic origin of liquid viscosity remains poorly understood. In this work, we calculate the viscosity of a $\mathrm{Cu_{50}Zr_{50}}$ metallic liquid and a Kob-Andersen model in a large range of temperatures and compare the results with a theoretical formula based on nonaffine linear response and instantaneous normal mode theory. This analysis reveals that only unstable localized instantaneous normal modes (ULINMs) contribute to viscosity, providing a microscopic definition of viscosity as diffusive momentum transport facilitated by local structural excitations mediated by ULINMs as precursors. Leveraging on the concept of configurational entropy, a quantitative model to connect viscosity with ULINMs is also proposed and validated in both the Arrhenius and non-Arrhenius regimes. In summary, our work provides a microscopic definition of liquid viscosity and highlights the fundamental role of ULINMs as its building blocks, ultimately opening the path to an atomic-scale prediction of viscosity in liquids and glasses., Comment: v1: comments welcome!
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- 2024
14. Efficient Human-Object-Interaction (EHOI) Detection via Interaction Label Coding and Conditional Decision
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Yang, Tsung-Shan, Wang, Yun-Cheng, Wei, Chengwei, You, Suya, and Kuo, C. -C. Jay
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Human-Object Interaction (HOI) detection is a fundamental task in image understanding. While deep-learning-based HOI methods provide high performance in terms of mean Average Precision (mAP), they are computationally expensive and opaque in training and inference processes. An Efficient HOI (EHOI) detector is proposed in this work to strike a good balance between detection performance, inference complexity, and mathematical transparency. EHOI is a two-stage method. In the first stage, it leverages a frozen object detector to localize the objects and extract various features as intermediate outputs. In the second stage, the first-stage outputs predict the interaction type using the XGBoost classifier. Our contributions include the application of error correction codes (ECCs) to encode rare interaction cases, which reduces the model size and the complexity of the XGBoost classifier in the second stage. Additionally, we provide a mathematical formulation of the relabeling and decision-making process. Apart from the architecture, we present qualitative results to explain the functionalities of the feedforward modules. Experimental results demonstrate the advantages of ECC-coded interaction labels and the excellent balance of detection performance and complexity of the proposed EHOI method.
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- 2024
15. From Data to Story: Towards Automatic Animated Data Video Creation with LLM-based Multi-Agent Systems
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Shen, Leixian, Li, Haotian, Wang, Yun, and Qu, Huamin
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Computer Science - Human-Computer Interaction - Abstract
Creating data stories from raw data is challenging due to humans' limited attention spans and the need for specialized skills. Recent advancements in large language models (LLMs) offer great opportunities to develop systems with autonomous agents to streamline the data storytelling workflow. Though multi-agent systems have benefits such as fully realizing LLM potentials with decomposed tasks for individual agents, designing such systems also faces challenges in task decomposition, performance optimization for sub-tasks, and workflow design. To better understand these issues, we develop Data Director, an LLM-based multi-agent system designed to automate the creation of animated data videos, a representative genre of data stories. Data Director interprets raw data, breaks down tasks, designs agent roles to make informed decisions automatically, and seamlessly integrates diverse components of data videos. A case study demonstrates Data Director's effectiveness in generating data videos. Throughout development, we have derived lessons learned from addressing challenges, guiding further advancements in autonomous agents for data storytelling. We also shed light on future directions for global optimization, human-in-the-loop design, and the application of advanced multi-modal LLMs., Comment: 6 pages, 2 figures, IEEE VIS 2024 Gen4DS Workshop
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- 2024
16. NotePlayer: Engaging Jupyter Notebooks for Dynamic Presentation of Analytical Processes
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Ouyang, Yang, Shen, Leixian, Wang, Yun, and Li, Quan
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Computer Science - Human-Computer Interaction - Abstract
Diverse presentation formats play a pivotal role in effectively conveying code and analytical processes during data analysis. One increasingly popular format is tutorial videos, particularly those based on Jupyter notebooks, which offer an intuitive interpretation of code and vivid explanations of analytical procedures. However, creating such videos requires a diverse skill set and significant manual effort, posing a barrier for many analysts. To bridge this gap, we introduce an innovative tool called NotePlayer, which connects notebook cells to video segments and incorporates a computational engine with language models to streamline video creation and editing. Our aim is to make the process more accessible and efficient for analysts. To inform the design of NotePlayer, we conducted a formative study and performed content analysis on a corpus of 38 Jupyter tutorial videos. This helped us identify key patterns and challenges encountered in existing tutorial videos, guiding the development of NotePlayer. Through a combination of a usage scenario and a user study, we validated the effectiveness of NotePlayer. The results show that the tool streamlines the video creation and facilitates the communication process for data analysts., Comment: 20 pages, UIST 2024
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- 2024
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17. Soundtracks of Asian America: Navigating Race Through Musical Performance by Grace Wang (review)
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Wang, Yun Emily
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- 2020
18. Word Embedding Dimension Reduction via Weakly-Supervised Feature Selection
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Xue, Jintang, Wang, Yun-Cheng, Wei, Chengwei, and Kuo, C. -C. Jay
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Computer Science - Computation and Language - Abstract
As a fundamental task in natural language processing, word embedding converts each word into a representation in a vector space. A challenge with word embedding is that as the vocabulary grows, the vector space's dimension increases and it can lead to a vast model size. Storing and processing word vectors are resource-demanding, especially for mobile edge-devices applications. This paper explores word embedding dimension reduction. To balance computational costs and performance, we propose an efficient and effective weakly-supervised feature selection method, named WordFS. It has two variants, each utilizing novel criteria for feature selection. Experiments conducted on various tasks (e.g., word and sentence similarity and binary and multi-class classification) indicate that the proposed WordFS model outperforms other dimension reduction methods at lower computational costs.
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- 2024
19. Turbulence, Thermal Pressure, and Their Dynamical Effects on Cosmic Baryonic Fluid
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Wang, Yun and He, Ping
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Physics - Fluid Dynamics - Abstract
We employ the IllustrisTNG simulation data to investigate the turbulent and thermal motions of the cosmic baryonic fluid. With continuous wavelet transform techniques, we define the pressure spectra, or density-weighted velocity power spectra, as well as the spectral ratios, for both turbulent and thermal motions. We find that the magnitude of the turbulent pressure spectrum grows slightly from $z=4$ to $2$ and increases significantly from $z=2$ to $1$ at large scales, suggesting progressive turbulence injection into the cosmic fluid, whereas from $z=1$ to $0$, the spectrum remains nearly constant, indicating that turbulence may be balanced by energy transfer and dissipation. The magnitude of the turbulent pressure spectra also increases with environmental density, with the highest density regions showing a turbulent pressure up to six times that of thermal pressure. We also explore the dynamical effects of turbulence and thermal motions, discovering that while thermal pressure provides support against structure collapse, turbulent pressure almost counteracts this support, challenging the common belief that turbulent pressure supports gas against overcooling., Comment: 7 pages, 4 figures, 1 table, submitted to the MNRAS Letters. arXiv admin note: text overlap with arXiv:2404.11255
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- 2024
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20. Realization of Conditional Operations through Transition Pathway Engineering
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Zhang, Sheng, Duan, Peng, Wang, Yun-Jie, Wang, Tian-Le, Wang, Peng, Zhao, Ren-Ze, Yang, Xiao-Yan, Zhao, Ze-An, Guo, Liang-Liang, Chen, Yong, Zhang, Hai-Feng, Du, Lei, Tao, Hao-Ran, Li, Zhi-Fei, Wu, Yuan, Jia, Zhi-Long, Kong, Wei-Cheng, Chen, Zhao-Yun, Wu, Yu-Chun, and Guo, Guo-Ping
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Quantum Physics - Abstract
In the NISQ era, achieving large-scale quantum computing demands compact circuits to mitigate decoherence and gate error accumulation. Quantum operations with diverse degrees of freedom hold promise for circuit compression, but conventional approaches encounter challenges in simultaneously adjusting multiple parameters. Here, we propose a transition composite gate (TCG) scheme grounded on state-selective transition path engineering, enabling more expressive conditional operations. We experimentally validate a controlled unitary (CU) gate as an example, with independent and continuous parameters. By adjusting the parameters of $\rm X^{12}$ gate, we obtain the CU family with a fidelity range of 95.2% to 99.0% leveraging quantum process tomography (QPT). To demonstrate the capability of circuit compression, we use TCG scheme to prepare 3-qubit Greenberger-Horne-Zeilinger (GHZ) and W states, with the fidelity of 96.77% and 95.72%. TCG can achieve the reduction in circuit depth of about 40% and 44% compared with the use of CZ gates only. Moreover, we show that short-path TCG (SPTCG) can further reduce the state-preparation circuit time cost. The TCG scheme exhibits advantages in certain quantum circuits and shows significant potential for large-scale quantum algorithms., Comment: 21 pages, 12 figures
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- 2024
21. ViTime: A Visual Intelligence-Based Foundation Model for Time Series Forecasting
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Yang, Luoxiao, Wang, Yun, Fan, Xinqi, Cohen, Israel, Chen, Jingdong, Zhao, Yue, and Zhang, Zijun
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition - Abstract
The success of large pretrained models in natural language processing (NLP) and computer vision (CV) has opened new avenues for constructing foundation models for time series forecasting (TSF). Traditional TSF foundation models rely heavily on numerical data fitting. In contrast, the human brain is inherently skilled at processing visual information, prefer predicting future trends by observing visualized sequences. From a biomimetic perspective, utilizing models to directly process numerical sequences might not be the most effective route to achieving Artificial General Intelligence (AGI). This paper proposes ViTime, a novel Visual Intelligence-based foundation model for TSF. ViTime overcomes the limitations of numerical time series data fitting by utilizing visual data processing paradigms and employs a innovative data synthesis method during training, called Real Time Series (RealTS). Experiments on a diverse set of previously unseen forecasting datasets demonstrate that ViTime achieves state-of-the-art zero-shot performance, even surpassing the best individually trained supervised models in some situations. These findings suggest that visual intelligence can significantly enhance time series analysis and forecasting, paving the way for more advanced and versatile models in the field. The code for our framework is accessible at https://github.com/IkeYang/ViTime.
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- 2024
22. GSBIQA: Green Saliency-guided Blind Image Quality Assessment Method
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Mei, Zhanxuan, Wang, Yun-Cheng, and Kuo, C. -C. Jay
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Blind Image Quality Assessment (BIQA) is an essential task that estimates the perceptual quality of images without reference. While many BIQA methods employ deep neural networks (DNNs) and incorporate saliency detectors to enhance performance, their large model sizes limit deployment on resource-constrained devices. To address this challenge, we introduce a novel and non-deep-learning BIQA method with a lightweight saliency detection module, called Green Saliency-guided Blind Image Quality Assessment (GSBIQA). It is characterized by its minimal model size, reduced computational demands, and robust performance. Experimental results show that the performance of GSBIQA is comparable with state-of-the-art DL-based methods with significantly lower resource requirements.
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- 2024
23. CS3: Cascade SAM for Sperm Segmentation
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Shi, Yi, Tian, Xu-Peng, Wang, Yun-Kai, Zhang, Tie-Yi, Yao, Bin, Wang, Hui, Shao, Yong, Wang, Cen-Cen, Zeng, Rong, and Zhan, De-Chuan
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Quantitative Biology - Quantitative Methods - Abstract
Automated sperm morphology analysis plays a crucial role in the assessment of male fertility, yet its efficacy is often compromised by the challenges in accurately segmenting sperm images. Existing segmentation techniques, including the Segment Anything Model(SAM), are notably inadequate in addressing the complex issue of sperm overlap-a frequent occurrence in clinical samples. Our exploratory studies reveal that modifying image characteristics by removing sperm heads and easily segmentable areas, alongside enhancing the visibility of overlapping regions, markedly enhances SAM's efficiency in segmenting intricate sperm structures. Motivated by these findings, we present the Cascade SAM for Sperm Segmentation (CS3), an unsupervised approach specifically designed to tackle the issue of sperm overlap. This method employs a cascade application of SAM to segment sperm heads, simple tails, and complex tails in stages. Subsequently, these segmented masks are meticulously matched and joined to construct complete sperm masks. In collaboration with leading medical institutions, we have compiled a dataset comprising approximately 2,000 unlabeled sperm images to fine-tune our method, and secured expert annotations for an additional 240 images to facilitate comprehensive model assessment. Experimental results demonstrate superior performance of CS3 compared to existing methods., Comment: Early accepted by MICCAI2024
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- 2024
24. Liouville-type theorems for Axisymmetric solutions to steady Navier-Stokes system in a layer domain
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Han, Jingwen, Wang, Yun, and Xie, Chunjing
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Mathematics - Analysis of PDEs - Abstract
In this paper, we investigate the Liouville-type theorems for axisymmetric solutions to steady Navier-Stokes system in a layer domain. The both cases for the flows supplemented with no-slip boundary and Navier boundary conditions are studied. If the width of the outlet grows at a rate less than $R^{\frac{1}{2}}$, any bounded solution is proved to be trivial. Meanwhile, if the width of the outlet grows at a rate less than $R^{\frac{4}{5}}$, every D-solution is proved to be trivial. The key idea of the proof is to establish a Saint-Venant type estimate that characterizes the growth of Dirichlet integral of nontrivial solutions.
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- 2024
25. Enabling Large-Scale and High-Precision Fluid Simulations on Near-Term Quantum Computers
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Chen, Zhao-Yun, Ma, Teng-Yang, Ye, Chuang-Chao, Xu, Liang, Tan, Ming-Yang, Zhuang, Xi-Ning, Xu, Xiao-Fan, Wang, Yun-Jie, Sun, Tai-Ping, Chen, Yong, Du, Lei, Guo, Liang-Liang, Zhang, Hai-Feng, Tao, Hao-Ran, Wang, Tian-Le, Yang, Xiao-Yan, Zhao, Ze-An, Wang, Peng, Zhang, Sheng, Zhang, Chi, Zhao, Ren-Ze, Jia, Zhi-Long, Kong, Wei-Cheng, Dou, Meng-Han, Wang, Jun-Chao, Liu, Huan-Yu, Xue, Cheng, Zhang, Peng-Jun-Yi, Huang, Sheng-Hong, Duan, Peng, Wu, Yu-Chun, and Guo, Guo-Ping
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Physics - Computational Physics ,Quantum Physics - Abstract
Quantum computational fluid dynamics (QCFD) offers a promising alternative to classical computational fluid dynamics (CFD) by leveraging quantum algorithms for higher efficiency. This paper introduces a comprehensive QCFD method, including an iterative method "Iterative-QLS" that suppresses error in quantum linear solver, and a subspace method to scale the solution to a larger size. We implement our method on a superconducting quantum computer, demonstrating successful simulations of steady Poiseuille flow and unsteady acoustic wave propagation. The Poiseuille flow simulation achieved a relative error of less than $0.2\%$, and the unsteady acoustic wave simulation solved a 5043-dimensional matrix. We emphasize the utilization of the quantum-classical hybrid approach in applications of near-term quantum computers. By adapting to quantum hardware constraints and offering scalable solutions for large-scale CFD problems, our method paves the way for practical applications of near-term quantum computers in computational science., Comment: 31 pages, 10 figures
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- 2024
26. Statistics-Informed Parameterized Quantum Circuit via Maximum Entropy Principle for Data Science and Finance
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Zhuang, Xi-Ning, Chen, Zhao-Yun, Xue, Cheng, Xu, Xiao-Fan, Wang, Chao, Liu, Huan-Yu, Sun, Tai-Ping, Wang, Yun-Jie, Wu, Yu-Chun, and Guo, Guo-Ping
- Subjects
Quantum Physics ,Quantitative Finance - Statistical Finance ,Statistics - Machine Learning - Abstract
Quantum machine learning has demonstrated significant potential in solving practical problems, particularly in statistics-focused areas such as data science and finance. However, challenges remain in preparing and learning statistical models on a quantum processor due to issues with trainability and interpretability. In this letter, we utilize the maximum entropy principle to design a statistics-informed parameterized quantum circuit (SI-PQC) for efficiently preparing and training of quantum computational statistical models, including arbitrary distributions and their weighted mixtures. The SI-PQC features a static structure with trainable parameters, enabling in-depth optimized circuit compilation, exponential reductions in resource and time consumption, and improved trainability and interpretability for learning quantum states and classical model parameters simultaneously. As an efficient subroutine for preparing and learning in various quantum algorithms, the SI-PQC addresses the input bottleneck and facilitates the injection of prior knowledge., Comment: 19 pages, 5 figures
- Published
- 2024
27. Simulation of open quantum systems on universal quantum computers
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Liu, Huan-Yu, Lin, Xiaoshui, Chen, Zhao-Yun, Xue, Cheng, Sun, Tai-Ping, Li, Qing-Song, Zhuang, Xi-Ning, Wang, Yun-Jie, Wu, Yu-Chun, Gong, Ming, and Guo, Guo-Ping
- Subjects
Quantum Physics - Abstract
The rapid development of quantum computers has enabled demonstrations of quantum advantages on various tasks. However, real quantum systems are always dissipative due to their inevitable interaction with the environment, and the resulting non-unitary dynamics make quantum simulation challenging with only unitary quantum gates. In this work, we present an innovative and scalable method to simulate open quantum systems using quantum computers. We define an adjoint density matrix as a counterpart of the true density matrix, which reduces to a mixed-unitary quantum channel and thus can be effectively sampled using quantum computers. This method has several benefits, including no need for auxiliary qubits and noteworthy scalability. Moreover, accurate long-time simulation can also be achieved as the adjoint density matrix and the true dissipated one converge to the same state. Finally, we present deployments of this theory in the dissipative quantum $XY$ model for the evolution of correlation and entropy with short-time dynamics and the disordered Heisenberg model for many-body localization with long-time dynamics. This work promotes the study of real-world many-body dynamics with quantum computers, highlighting the potential to demonstrate practical quantum advantages., Comment: 13 pages, 6 figures
- Published
- 2024
28. An Multi-resources Integration Empowered Task Offloading in Internet of Vehicles: From the Perspective of Wireless Interference
- Author
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Liu, Xiaowu, Wang, Yun, Yu, Kan, Chen, Dianxia, Li, Dong, Zhang, Qixun, and Feng, Zhiyong
- Subjects
Computer Science - Information Theory - Abstract
The task offloading technology plays a vital role in the Internet of Vehicles (IoV), by satisfying the diversified demands of the vehicles, such as the energy consumption and processing latency of the computing task. Different from the previous works, on the one hand, they ignored the wireless interference of communications among vehicle-to-vehicle (V2V), as well as between vehicles and roadside units (RSU); on the other hand, the available resources of parked vehicles on the roadside and other moving vehicles on the road are also ignored. In this paper, first of all, we adopt a truncated Gaussian distribution for modeling the vehicle moving speed, instead of the simplistic average speed models in prior studies. Then, with the consideration of wireless interference and effective communication duration existing in V2V and RSUs, we establish an analytical framework of the task offloading, characterized by the energy consumption and processing delay, by integrating computing resources of parked/moving vehicles and RSUs. Furthermore, inspired by the method of multi-agent deterministic policy gradient (MADDPG), we address a joint optimization of the energy consumption and processing delay of the computing task, while ensuring the load balancing of the resources. Finally, the simulations demonstrate the effectiveness and correctness of the proposed MADDPG. In particular, compared with the current popular methods of the task offloading, the MADDPG shows the best performance, in terms of convergence speed, energy consumption and processing delay., Comment: The paper has been rejected by IEEE Transactions on Communications, apart from the Reviewers' comments, we need reconsider that inaccuracies in the data or results were identified post-submission, necessitating a withdrawal for correction. In addition, considering the plausibility of the simulations, one or more of the authors requested the withdrawal of the manuscript
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- 2024
29. Adaptive Convolutional Forecasting Network Based on Time Series Feature-Driven
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Zhang, Dandan, Zhang, Zhiqiang, Chen, Nanguang, and Wang, Yun
- Subjects
Computer Science - Machine Learning ,Computer Science - Information Retrieval - Abstract
Time series data in real-world scenarios contain a substantial amount of nonlinear information, which significantly interferes with the training process of models, leading to decreased prediction performance. Therefore, during the time series forecasting process, extracting the local and global time series patterns and understanding the potential nonlinear features among different time observations are highly significant. To address this challenge, we introduce multi-resolution convolution and deformable convolution operations. By enlarging the receptive field using convolution kernels with different dilation factors to capture temporal correlation information at different resolutions, and adaptively adjusting the sampling positions through additional offset vectors, we enhance the network's ability to capture potential nonlinear features among time observations. Building upon this, we propose ACNet, an adaptive convolutional network designed to effectively model the local and global temporal dependencies and the nonlinear features between observations in multivariate time series. Specifically, by extracting and fusing time series features at different resolutions, we capture both local contextual information and global patterns in the time series. The designed nonlinear feature adaptive extraction module captures the nonlinear features among different time observations in the time series. We evaluated the performance of ACNet across twelve real-world datasets. The results indicate that ACNet consistently achieves state-of-the-art performance in both short-term and long-term forecasting tasks with favorable runtime efficiency.
- Published
- 2024
30. Demonstrating a universal logical gate set on a superconducting quantum processor
- Author
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Zhang, Jiaxuan, Chen, Zhao-Yun, Wang, Yun-Jie, Lu, Bin-Han, Zhang, Hai-Feng, Li, Jia-Ning, Duan, Peng, Wu, Yu-Chun, and Guo, Guo-Ping
- Subjects
Quantum Physics - Abstract
Fault-tolerant quantum computing (FTQC) is essential for achieving large-scale practical quantum computation. Implementing arbitrary FTQC requires the execution of a universal gate set on logical qubits, which is highly challenging. Particularly, in the superconducting system, two-qubit gates on surface code logical qubits have not been realized. Here, we experimentally implement logical CNOT gate as well as arbitrary single-qubit rotation gates on distance-2 surface codes using the superconducting quantum processor \textit{Wukong}, thereby demonstrating a universal logical gate set. In the experiment, we design encoding circuits to prepare the required logical states, where the fidelities of the fault-tolerantly prepared logical states surpass those of the physical states. Furthermore, we demonstrate the transversal CNOT gate between two logical qubits and fault-tolerantly prepare four logical Bell states, all with fidelities exceeding those of the Bell states on the physical qubits. Using the logical CNOT gate and an ancilla logical state, arbitrary single-qubit rotation gate is implemented through gate teleportation. All logical gates are characterized on a complete state set and their fidelities are evaluated by logical Pauli transfer matrices. Implementation of the universal logical gate set and entangled logical states beyond physical fidelity marks a significant step towards FTQC on superconducting quantum processors., Comment: 15 pages, 12 figures
- Published
- 2024
31. cuTN-QSVM: cuTensorNet-accelerated Quantum Support Vector Machine with cuQuantum SDK
- Author
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Chen, Kuan-Cheng, Li, Tai-Yue, Wang, Yun-Yuan, See, Simon, Wang, Chun-Chieh, Wille, Robert, Chen, Nan-Yow, Yang, An-Cheng, and Lin, Chun-Yu
- Subjects
Quantum Physics ,Computer Science - Distributed, Parallel, and Cluster Computing ,Computer Science - Software Engineering - Abstract
This paper investigates the application of Quantum Support Vector Machines (QSVMs) with an emphasis on the computational advancements enabled by NVIDIA's cuQuantum SDK, especially leveraging the cuTensorNet library. We present a simulation workflow that substantially diminishes computational overhead, as evidenced by our experiments, from exponential to quadratic cost. While state vector simulations become infeasible for qubit counts over 50, our evaluation demonstrates that cuTensorNet speeds up simulations to be completed within seconds on the NVIDIA A100 GPU, even for qubit counts approaching 784. By employing multi-GPU processing with Message Passing Interface (MPI), we document a marked decrease in computation times, effectively demonstrating the strong linear speedup of our approach for increasing data sizes. This enables QSVMs to operate efficiently on High-Performance Computing (HPC) systems, thereby opening a new window for researchers to explore complex quantum algorithms that have not yet been investigated. In accuracy assessments, our QSVM achieves up to 95\% on challenging classifications within the MNIST dataset for training sets larger than 100 instances, surpassing the capabilities of classical SVMs. These advancements position cuTensorNet within the cuQuantum SDK as a pivotal tool for scaling quantum machine learning simulations and potentially signpost the seamless integration of such computational strategies as pivotal within the Quantum-HPC ecosystem., Comment: 10 pages, 14 figures
- Published
- 2024
32. Identifying Halos in Cosmological Simulations with Continuous Wavelet Analysis: The 2D Case
- Author
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Li, Minxing, Wang, Yun, and He, Ping
- Subjects
Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
Continuous wavelet analysis is gaining popularity in science and engineering for its ability to analyze data across spatial and scale domains simultaneously. In this study, we introduce a wavelet-based method to identify halos and assess its feasibility in two-dimensional (2D) scenarios. We begin with the generation of four pseudo-2D datasets from the SIMBA dark matter simulation by compressing thin slices of three-dimensional (3D) data into 2D. We then calculate the continuous wavelet transform (CWT) directly from the particle distributions, identify local maxima that represent actual halos, and segment the CWT to delineate halo boundaries. A comparison with the traditional friends-of-friends (FOF) method shows that our CWT-identified halos, while contain slightly fewer particles, have smoother boundaries and are more compact in dense regions. In contrast, the CWT method can link particles over greater distances to form halos in sparse regions due to its spatial segmentation scheme. The spatial distribution and halo power spectrum of both CWT and FOF halos demonstrate substantial consistency, validating the 2D applicability of CWT for halo detection. Our identification scheme operates with a linear time complexity of $\mathcal{O}(N)$, suggesting its suitability for analyzing significantly larger datasets in the future., Comment: 19 pages, 13 figures, 2 table, comments welcome, accepted by ApJ
- Published
- 2024
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- View/download PDF
33. Sung and Spoken Puns as Queer "Home Making" in Toronto's Chinese Diaspora
- Author
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Wang, Yun Emily
- Published
- 2018
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34. Generative Artificial Intelligence for Designing Multi-Scale Hydrogen Fuel Cell Catalyst Layer Nanostructures.
- Author
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Niu, Zhiqiang, Zhao, Wanhui, Deng, Hao, Tian, Lu, Pinfield, Valerie, Ming, Pingwen, and Wang, Yun
- Subjects
catalyst layer ,fuel cells ,generative artificial intelligence ,multiphysics ,multiscale design - Abstract
Multiscale design of catalyst layers (CLs) is important to advancing hydrogen electrochemical conversion devices toward commercialized deployment, which has nevertheless been greatly hampered by the complex interplay among multiscale CL components, high synthesis cost and vast design space. We lack rational design and optimization techniques that can accurately reflect the nanostructure-performance relationship and cost-effectively search the design space. Here, we fill this gap with a deep generative artificial intelligence (AI) framework, GLIDER, that integrates recent generative AI, data-driven surrogate techniques and collective intelligence to efficiently search the optimal CL nanostructures driven by their electrochemical performance. GLIDER achieves realistic multiscale CL digital generation by leveraging the dimensionality-reduction ability of quantized vector-variational autoencoder. The powerful generative capability of GLIDER allows the efficient search of the optimal design parameters for the Pt-carbon-ionomer nanostructures of CLs. We also demonstrate that GLIDER is transferable to other fuel cell electrode microstructure generation, e.g., fibrous gas diffusion layers and solid oxide fuel cell anode. GLIDER is of potential as a digital tool for the design and optimization of broad electrochemical energy devices.
- Published
- 2024
35. Turbulence revealed by wavelet transform: power spectrum and intermittency for the velocity field of the cosmic baryonic fluid
- Author
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Wang, Yun and He, Ping
- Subjects
Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Fluid Dynamics - Abstract
We use continuous wavelet transform techniques to construct the global and environment-dependent wavelet statistics, such as energy spectrum and kurtosis, to study the fluctuation and intermittency of the turbulent motion in the cosmic fluid velocity field with the IllustrisTNG simulation data. We find that the peak scale of the energy spectrum define a characteristic scale, which can be regarded as the integral scale of turbulence, and the Nyquist wavenumber can be regarded as the dissipation scale. With these two characteristic scales, the energy spectrum can be divided into the energy-containing range, the inertial range and the dissipation range of turbulence. The wavelet kurtosis is an increasing function of the wavenumber $k$, first grows rapidly then slowly with $k$, indicating that the cosmic fluid becomes increasingly intermittent with $k$. In the energy-containing range, the energy spectrum increases significantly from $z = 2$ to $1$, but remains almost unchanged from $z = 1$ to $0$. We find that both the environment-dependent spectrum and kurtosis are similar to the global ones, and the magnitude of the spectrum is smallest in the lowest-density and largest in the highest-density environment, suggesting that the cosmic fluid is more turbulent in a high-density than in a low-density environment. In the inertial range, the energy spectrum's exponent is steeper than both the Kolmogorov and Burgers exponents, indicating more efficient energy transfer compared to Kolmogorov or Burgers turbulence., Comment: 19 pages, 11 figures, 2 tables, accepted by ApJ
- Published
- 2024
- Full Text
- View/download PDF
36. Gen4DS: Workshop on Data Storytelling in an Era of Generative AI
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Lan, Xingyu, Yang, Leni, Wang, Zezhong, Wang, Yun, Shi, Danqing, and Carpendale, Sheelagh
- Subjects
Computer Science - Human-Computer Interaction ,Computer Science - Artificial Intelligence ,Computer Science - Graphics - Abstract
Storytelling is an ancient and precious human ability that has been rejuvenated in the digital age. Over the last decade, there has been a notable surge in the recognition and application of data storytelling, both in academia and industry. Recently, the rapid development of generative AI has brought new opportunities and challenges to this field, sparking numerous new questions. These questions may not necessarily be quickly transformed into papers, but we believe it is necessary to promptly discuss them to help the community better clarify important issues and research agendas for the future. We thus invite you to join our workshop (Gen4DS) to discuss questions such as: How can generative AI facilitate the creation of data stories? How might generative AI alter the workflow of data storytellers? What are the pitfalls and risks of incorporating AI in storytelling? We have designed both paper presentations and interactive activities (including hands-on creation, group discussion pods, and debates on controversial issues) for the workshop. We hope that participants will learn about the latest advances and pioneering work in data storytelling, engage in critical conversations with each other, and have an enjoyable, unforgettable, and meaningful experience at the event.
- Published
- 2024
37. Strong law of large numbers for $m$-dependent and stationary random variables under sub-linear expectations
- Author
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Gu, Wang-Yun and Zhang, Li-Xin
- Subjects
Mathematics - Probability ,60F15 - Abstract
The arm of this paper is to establish the strong law of large numbers (SLLN) of $m$-dependent random variables under the framework of sub-linear expectations. We establish the SLLN for a sequence of independent, but not necessarily identically distributed random variables. The study further extends the SLLN to $m$-dependent and stationary sequence of random variables with the condition $C_{\mathbb V}(|X_1|)<\infty$ which is the sufficient and necessary condition of SLLN in the case of independent and identically distributed random variables., Comment: 24 pages
- Published
- 2024
38. GreenSaliency: A Lightweight and Efficient Image Saliency Detection Method
- Author
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Mei, Zhanxuan, Wang, Yun-Cheng, and Kuo, C. -C. Jay
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Image saliency detection is crucial in understanding human gaze patterns from visual stimuli. The escalating demand for research in image saliency detection is driven by the growing necessity to incorporate such techniques into various computer vision tasks and to understand human visual systems. Many existing image saliency detection methods rely on deep neural networks (DNNs) to achieve good performance. However, the high computational complexity associated with these approaches impedes their integration with other modules or deployment on resource-constrained platforms, such as mobile devices. To address this need, we propose a novel image saliency detection method named GreenSaliency, which has a small model size, minimal carbon footprint, and low computational complexity. GreenSaliency can be a competitive alternative to the existing deep-learning-based (DL-based) image saliency detection methods with limited computation resources. GreenSaliency comprises two primary steps: 1) multi-layer hybrid feature extraction and 2) multi-path saliency prediction. Experimental results demonstrate that GreenSaliency achieves comparable performance to the state-of-the-art DL-based methods while possessing a considerably smaller model size and significantly reduced computational complexity.
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- 2024
39. NeuroPictor: Refining fMRI-to-Image Reconstruction via Multi-individual Pretraining and Multi-level Modulation
- Author
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Huo, Jingyang, Wang, Yikai, Qian, Xuelin, Wang, Yun, Li, Chong, Feng, Jianfeng, and Fu, Yanwei
- Subjects
Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
Recent fMRI-to-image approaches mainly focused on associating fMRI signals with specific conditions of pre-trained diffusion models. These approaches, while producing high-quality images, capture only a limited aspect of the complex information in fMRI signals and offer little detailed control over image creation. In contrast, this paper proposes to directly modulate the generation process of diffusion models using fMRI signals. Our approach, NeuroPictor, divides the fMRI-to-image process into three steps: i) fMRI calibrated-encoding, to tackle multi-individual pre-training for a shared latent space to minimize individual difference and enable the subsequent multi-subject training; ii) fMRI-to-image multi-subject pre-training, perceptually learning to guide diffusion model with high- and low-level conditions across different individuals; iii) fMRI-to-image single-subject refining, similar with step ii but focus on adapting to particular individual. NeuroPictor extracts high-level semantic features from fMRI signals that characterizing the visual stimulus and incrementally fine-tunes the diffusion model with a low-level manipulation network to provide precise structural instructions. By training with about 67,000 fMRI-image pairs from various individuals, our model enjoys superior fMRI-to-image decoding capacity, particularly in the within-subject setting, as evidenced in benchmark datasets. Our code and model are available at https://jingyanghuo.github.io/neuropictor/., Comment: Accepted by ECCV 2024
- Published
- 2024
40. A system capable of verifiably and privately screening global DNA synthesis
- Author
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Baum, Carsten, Berlips, Jens, Chen, Walther, Cui, Hongrui, Damgard, Ivan, Dong, Jiangbin, Esvelt, Kevin M., Foner, Leonard, Gao, Mingyu, Gretton, Dana, Kysel, Martin, Li, Juanru, Li, Xiang, Paneth, Omer, Rivest, Ronald L., Sage-Ling, Francesca, Shamir, Adi, Shen, Yue, Sun, Meicen, Vaikuntanathan, Vinod, Van Hauwe, Lynn, Vogel, Theia, Weinstein-Raun, Benjamin, Wang, Yun, Wichs, Daniel, Wooster, Stephen, Yao, Andrew C., Yu, Yu, Zhang, Haoling, and Zhang, Kaiyi
- Subjects
Computer Science - Cryptography and Security - Abstract
Printing custom DNA sequences is essential to scientific and biomedical research, but the technology can be used to manufacture plagues as well as cures. Just as ink printers recognize and reject attempts to counterfeit money, DNA synthesizers and assemblers should deny unauthorized requests to make viral DNA that could be used to ignite a pandemic. There are three complications. First, we don't need to quickly update printers to deal with newly discovered currencies, whereas we regularly learn of new viruses and other biological threats. Second, anti-counterfeiting specifications on a local printer can't be extracted and misused by malicious actors, unlike information on biological threats. Finally, any screening must keep the inspected DNA sequences private, as they may constitute valuable trade secrets. Here we describe SecureDNA, a free, privacy-preserving, and fully automated system capable of verifiably screening all DNA synthesis orders of 30+ base pairs against an up-to-date database of hazards, and its operational performance and specificity when applied to 67 million base pairs of DNA synthesized by providers in the United States, Europe, and China., Comment: Main text 10 pages, 4 figures. 5 supplementary figures. Total 21 pages. Direct correspondence to: Ivan B. Damgard (ivan@cs.au.dk), Andrew C. Yao (andrewcyao@mail.tsinghua.edu.cn), Kevin M. Esvelt (esvelt@mit.edu)
- Published
- 2024
41. A Sampling-based Framework for Hypothesis Testing on Large Attributed Graphs
- Author
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Wang, Yun, Kosyfaki, Chrysanthi, Amer-Yahia, Sihem, and Cheng, Reynold
- Subjects
Statistics - Machine Learning ,Computer Science - Databases ,Computer Science - Machine Learning - Abstract
Hypothesis testing is a statistical method used to draw conclusions about populations from sample data, typically represented in tables. With the prevalence of graph representations in real-life applications, hypothesis testing in graphs is gaining importance. In this work, we formalize node, edge, and path hypotheses in attributed graphs. We develop a sampling-based hypothesis testing framework, which can accommodate existing hypothesis-agnostic graph sampling methods. To achieve accurate and efficient sampling, we then propose a Path-Hypothesis-Aware SamplEr, PHASE, an m- dimensional random walk that accounts for the paths specified in a hypothesis. We further optimize its time efficiency and propose PHASEopt. Experiments on real datasets demonstrate the ability of our framework to leverage common graph sampling methods for hypothesis testing, and the superiority of hypothesis-aware sampling in terms of accuracy and time efficiency.
- Published
- 2024
42. Generalized paths and cycles in semicomplete multipartite digraphs
- Author
-
Bang-Jensen, Jørgen, Wang, Yun, and Yeo, Anders
- Subjects
Mathematics - Combinatorics ,05C20, 05c38, 05c45, 05c85 - Abstract
It is well-known and easy to show that even the following version of the directed travelling salesman problem is NP-complete: Given a strongly connected complete digraph $D=(V,A)$, a cost function $w: A\rightarrow \{0,1\}$ and a natural number $K$; decide whether $D$ has a directed Hamiltonian cycle of cost at most $K$. We study the following variant of this problem for $\{0,1\}$-weighted semicomplete digraphs where the set of arcs which have cost 1 form a collection of vertex-disjoint complete digraphs. A digraph is \textbf{semicomplete multipartite} if it can be obtained from a semicomplete digraph $D$ by choosing a collection of vertex-disjoint subsets $X_1,\ldots{},X_c$ of $V(D)$ and then deleting all arcs both of whose end-vertices lie inside some $X_i$. Let $D$ be a semicomplete digraph with a cost function $w$ as above, where $w(a)=1$ precisely when $a$ is an arc inside one of the subsets $X_1,\ldots{},X_c$ and let $D^*$ be the corresponding \smd{} that we obtain by deleting all arcs inside the $X_i$'s. Then every cycle $C$ of $D$ corresponds to a {\bf generalized cycle} $C^g$ of $D^*$ which is either the cycle $C$ itself if $w(C)=0$ or a collection of two or more paths that we obtain by deleting all arcs of cost 1 on $C$. Similarly we can define a {\bf generalized path} $P^g$ in a semicomplete multipartite digraph. The purpose of this paper is to study structural and algorithmic properties of generalized paths and cycles in semicomplete multipartite digraphs. This allows us to identify classes of directed $\{0,1\}$-weighted TSP instances that can be solved in polynomial time as well as others for which we can get very close to the optimum in polynomial time. Along with these results we also show that two natural questions about properties of cycles meeting all partite sets in semicomplete multipartite digraphs are NP-complete.
- Published
- 2024
43. Multi-GPU-Enabled Hybrid Quantum-Classical Workflow in Quantum-HPC Middleware: Applications in Quantum Simulations
- Author
-
Chen, Kuan-Cheng, Li, Xiaoren, Xu, Xiaotian, Wang, Yun-Yuan, and Liu, Chen-Yu
- Subjects
Quantum Physics ,Computer Science - Artificial Intelligence ,Computer Science - Hardware Architecture ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Achieving high-performance computation on quantum systems presents a formidable challenge that necessitates bridging the capabilities between quantum hardware and classical computing resources. This study introduces an innovative distribution-aware Quantum-Classical-Quantum (QCQ) architecture, which integrates cutting-edge quantum software framework works with high-performance classical computing resources to address challenges in quantum simulation for materials and condensed matter physics. At the heart of this architecture is the seamless integration of VQE algorithms running on QPUs for efficient quantum state preparation, Tensor Network states, and QCNNs for classifying quantum states on classical hardware. For benchmarking quantum simulators, the QCQ architecture utilizes the cuQuantum SDK to leverage multi-GPU acceleration, integrated with PennyLane's Lightning plugin, demonstrating up to tenfold increases in computational speed for complex phase transition classification tasks compared to traditional CPU-based methods. This significant acceleration enables models such as the transverse field Ising and XXZ systems to accurately predict phase transitions with a 99.5% accuracy. The architecture's ability to distribute computation between QPUs and classical resources addresses critical bottlenecks in Quantum-HPC, paving the way for scalable quantum simulation. The QCQ framework embodies a synergistic combination of quantum algorithms, machine learning, and Quantum-HPC capabilities, enhancing its potential to provide transformative insights into the behavior of quantum systems across different scales. As quantum hardware continues to improve, this hybrid distribution-aware framework will play a crucial role in realizing the full potential of quantum computing by seamlessly integrating distributed quantum resources with the state-of-the-art classical computing infrastructure., Comment: 8 pages, 8 figures
- Published
- 2024
44. Piet: Facilitating Color Authoring for Motion Graphics Video
- Author
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Shi, Xinyu, Wang, Yinghou, Wang, Yun, and Zhao, Jian
- Subjects
Computer Science - Human-Computer Interaction - Abstract
Motion graphic (MG) videos are effective and compelling for presenting complex concepts through animated visuals; and colors are important to convey desired emotions, maintain visual continuity, and signal narrative transitions. However, current video color authoring workflows are fragmented, lacking contextual previews, hindering rapid theme adjustments, and not aligning with progressive authoring flows of designers. To bridge this gap, we introduce Piet, the first tool tailored for MG video color authoring. Piet features an interactive palette to visually represent color distributions, support controllable focus levels, and enable quick theme probing via grouped color shifts. We interviewed 6 domain experts to identify the frustrations in current tools and inform the design of Piet. An in-lab user study with 13 expert designers showed that Piet effectively simplified the MG video color authoring and reduced the friction in creative color theme exploration., Comment: Accepted by CHI 2024
- Published
- 2024
45. Tree-Regularized Tabular Embeddings
- Author
-
Li, Xuan, Wang, Yun, and Li, Bo
- Subjects
Computer Science - Machine Learning - Abstract
Tabular neural network (NN) has attracted remarkable attentions and its recent advances have gradually narrowed the performance gap with respect to tree-based models on many public datasets. While the mainstreams focus on calibrating NN to fit tabular data, we emphasize the importance of homogeneous embeddings and alternately concentrate on regularizing tabular inputs through supervised pretraining. Specifically, we extend a recent work (DeepTLF) and utilize the structure of pretrained tree ensembles to transform raw variables into a single vector (T2V), or an array of tokens (T2T). Without loss of space efficiency, these binarized embeddings can be consumed by canonical tabular NN with fully-connected or attention-based building blocks. Through quantitative experiments on 88 OpenML datasets with binary classification task, we validated that the proposed tree-regularized representation not only tapers the difference with respect to tree-based models, but also achieves on-par and better performance when compared with advanced NN models. Most importantly, it possesses better robustness and can be easily scaled and generalized as standalone encoder for tabular modality. Codes: https://github.com/milanlx/tree-regularized-embedding., Comment: Table Representation Learning Workshop at NeurIPS 2023
- Published
- 2024
46. End-to-End Quantum Vision Transformer: Towards Practical Quantum Speedup in Large-Scale Models
- Author
-
Xue, Cheng, Chen, Zhao-Yun, Zhuang, Xi-Ning, Wang, Yun-Jie, Sun, Tai-Ping, Wang, Jun-Chao, Liu, Huan-Yu, Wu, Yu-Chun, Wang, Zi-Lei, and Guo, Guo-Ping
- Subjects
Quantum Physics - Abstract
The field of quantum deep learning presents significant opportunities for advancing computational capabilities, yet it faces a major obstacle in the form of the "information loss problem" due to the inherent limitations of the necessary quantum tomography in scaling quantum deep neural networks. This paper introduces an end-to-end Quantum Vision Transformer (QViT), which incorporates an innovative quantum residual connection technique, to overcome these challenges and therefore optimize quantum computing processes in deep learning. Our thorough complexity analysis of the QViT reveals a theoretically exponential and empirically polynomial speedup, showcasing the model's efficiency and potential in quantum computing applications. We conducted extensive numerical tests on modern, large-scale transformers and datasets, establishing the QViT as a pioneering advancement in applying quantum deep neural networks in practical scenarios. Our work provides a comprehensive quantum deep learning paradigm, which not only demonstrates the versatility of current quantum linear algebra algorithms but also promises to enhance future research and development in quantum deep learning., Comment: 24pages, 10 figures
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- 2024
47. Quasicrystals as an intermediate form of matter between crystalline and amorphous solids
- Author
-
Zhao, Kun, Baggioli, Matteo, Xu, Wen-Sheng, Douglas, Jack F., and Wang, Yun-Jiang
- Subjects
Condensed Matter - Materials Science ,Condensed Matter - Soft Condensed Matter - Abstract
Quasicrystals have been observed in a variety of materials ranging from metal alloys to block copolymers and represent an "intermediate" form of matter between crystals and amorphous materials (glasses and liquids) in that their structural and dynamical properties can not readily described in terms of conventional solid-state models of liquids and solids. In the present work, we present a comprehensive analysis of basic thermodynamic and dynamic properties of quasicrystals to better understand the nature of the atomic motion underlying diffusion and structural relaxation in these materials. As our model system, we investigate a dodecagonal quasicrystal using molecular dynamics (MD) simulations in two dimensions (2D), subject to periodic boundary conditions. We observe a two-stage relaxation dynamics in the self-intermediate scattering function $F_s(k,t)$ of our quasicrystal material involving a fast $\beta$-relaxation on a ps timescale and $\alpha$ relaxation process having a highly temperature dependent relaxation time whose activation energy varies in concert with the extent of string-like collective motion. Multi-step relaxation of the intermediate scattering function and string-like collective atomic motion have similarly been observed ubiquitously in glass-forming liquids at low temperatures and in crystalline materials at elevated temperatures where structural relaxation and diffusion are both non-Arrhenius. After examining the dynamics of our quasi-crystalline material in great detail, we conclude that its dynamics more closely resemble observations on metallic glass-forming liquids, in qualitative accord with previous neutron scattering studies., Comment: v1: comments welcome
- Published
- 2024
48. A parallel domain decomposition method for solving elliptic equations on manifolds
- Author
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Qin, Lizhen, Wang, Feng, and Wang, Yun
- Subjects
Mathematics - Numerical Analysis ,Primary 65N30, Secondary 58J05, 65N55 - Abstract
We propose a new numerical domain decomposition method for solving elliptic equations on compact Riemannian manifolds. One advantage of this method is its ability to bypass the need for global triangulations or grids on the manifolds. Additionally, it features a highly parallel iterative scheme. To verify its efficacy, we conduct numerical experiments on some $4$-dimensional manifolds without and with boundary., Comment: Comments are welcome!
- Published
- 2024
49. Association of circulating cytokine levels and tissue-infiltrating myeloid cells with achalasia: results from Mendelian randomization and validation through clinical characteristics and single-cell RNA sequencing
- Author
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Li, Xin-Yue, Xiang, An-Yi, Liu, Xin-Yang, Wang, Ke-Hao, Wang, Yun, Pan, Hai-Ting, Zhang, Ji-Yuan, Yao, Lu, Liu, Zu-Qiang, Xu, Jia-Qi, Li, Xiao-Qing, Zhang, Zhao-Chao, Chen, Wei-Feng, Zhou, Ping-Hong, and Li, Quan-Lin
- Published
- 2024
- Full Text
- View/download PDF
50. Formation mechanism of lamellar structure of inner rust layer in weathering steel and its influence on Cl− erosion resistance
- Author
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Wang, Yun-long, Ding, Guo-hua, Liang, Li-meng, Wang, Yong-xia, and Liu, Chun-jing
- Published
- 2024
- Full Text
- View/download PDF
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