80 results on '"Warner RE"'
Search Results
2. Energy dependence of the total reaction cross section of isomeric F-18(m) on silicon below 400 MeV
- Author
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Roberts, DA, Becchetti, FD, Janecke, J, Lee, MY, O'Donnell, TW, Pham, K, Warner, RE, Ronningen, RM, Wilschut, HW, and KVI - Center for Advanced Radiation Technology
- Subjects
J(PI)=5(+) ,NUCLEAR BEAM ,HALO ,SCATTERING ,SI ,Nuclear Experiment ,ALPHA-PARTICLES - Abstract
A 25 MeV/nucleon primary O-17 beam was used to produce an isomeric state F-18(m) beam via the single-nucleon transfer reaction O-17 (C-12, B-11)F-18(m). The total nuclear reaction cross section, sigma(R), of F-18(m) (metastable) on silicon was measured using a stack of silicon surface barrier detectors that included a position sensitive silicon detector (PSD). The total reaction cross sections were determined as a function of bombarding energy up to 400 MeV by measuring the energy loss in each detector. The reaction cross sections were measured both for a mixture of metastable- and ground-state ions and for a pure ground-state beam. The reaction cross sections for N-14 and O-16 beams were also measured simultaneously. The reaction cross sections for the metastable beam were deduced from the mixed- and the ground-state cross sections, corrected for the measured purity of the mixed-state beam. The observed reaction cross sections for F-18(m) are larger at low energies than the cross sections measured for the ground state. The isomeric cross sections can be reproduced by an optical model potential having a diffuseness of 0.8 fm, compared to a more conventional diffuseness parameter of 0.5 fm, which is adequate to reproduce the N-14, O-16, and F-18(g.s.) cross sections measured in this experiment.
- Published
- 2002
3. Total reaction and neutron-removal cross sections of (30-60)A MeV Be isotopes on Si and Pb
- Author
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Warner, RE, McKinnon, MH, Needleman, JS, Shaner, NC, Becchetti, ED, Roberts, DA, Galonsky, A, Ronningen, RM, Steiner, M, Brown, JA, Kolata, JJ, Nadasen, A, and Subotić, Krunoslav M.
- Subjects
Nuclear Experiment - Abstract
Total reaction cross sections sigma (R) of all particle-stable Be isotopes on Si, and several of their neutron-removal cross sections sigma (-xn), were measured near (30-60)A MeV by injecting magnetically separated, focused, monoenergetic secondary beams of these projectiles into a telescope containing nine Si transmission detectors. Similar measurements were made for Be10-12 on Pb, by placing Pb targets between the Si detectors of another telescope. A Glauber analysis of the Be+Si sigma (R) data, including only nuclear forces, yields rms radii for the Be isotopes in general agreement with those found by other workers. Similar calculations underpredict the CTR data for Be+Pb, showing the importance of electromagnetic dissociation. A simple microscopic theory reproduces the n-removal cross sections for Be-11 and Be-14 on Si, but overpredicts n removal for Be-11 on Ph. For Be-12 incident upon both Si and Pb targets, sigma (-2n) significantly exceeds sigma (-n), as is expected since 1n removal leaves the weakly bound halo nucleus Be-11. A similar effect for Be-10 on Si is attributed to the weak binding of the last neutron of Be-9; however, for Be-10+Pb, sigma (-n) slightly exceeds sigma (-2n).
- Published
- 2001
4. Total reaction and neutron-removal cross sections of (30-60)A MeV He and Li isotopes on Pb
- Author
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Warner, RE, McKinnon, MH, Shaner, NC, Becchetti, FD, Nadasen, A, Roberts, DA, Brown, JA, Galonsky, A, Kolata, JJ, Ronningen, RM, Steiner, M, and Subotić, Krunoslav M.
- Abstract
Total reaction cross sections sigma(R) of (30-60)A MeV He-4,He-6,He-8 and Li-6,Li-7,Li-8,Li-9,Li-11 on Ph, and 2n-removal cross sections sigma-(2n) of He-6,He-8 and Li-11 on Pb, were measured by injecting magnetically separated, focused, monoenergetic, secondary beams of those projectiles into a telescope containing Pb targets separated by thin Si detectors. All these sigma(R)s (except He-4), and sigma-(2n) for He-6 and Li-11, are underpredicted by microscopic model calculations which include only nuclear forces. Better agreement is achieved by including electromagnetic dissociation in the model, for those projectiles for which either the electric dipole response functions or the dominant photodissociation cross sections were known. The cross sections sigma-(4n) for He-8, sigma-(xn) for Li-7,Li-8,Li-9, and (sigma-(3n)+ sigma-(4n)) for Li-11 were found to be less than or equal to 0.7 b. All sigma(R)s were measured to better than 5% accuracy, showing that the method is usable for other target elements sandwiched into a Si telescope.
- Published
- 2000
5. Reaction cross sections in Si of light proton-halo candidates N-12 and Ne-17
- Author
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Warner, RE, Thirumurthy, H, Woodroffe, J, Becchetti, FD, Brown, JA, Davids, BS, Galonsky, A, Kolata, JJ, Kruse, JJ, Lee, MY, Nadasen, A, O'Donnell, TW, Roberts, DA, Ronningen, RM, Samanta, C, Schwandt, P, von Schwarzenberg, J, Steiner, M, Subotić, Krunoslav M., Wang, Jiansong, and Zimmerman, JA
- Subjects
proton-halo nuclei ,Nuclear Theory ,charge-removal cross sections ,Physics::Accelerator Physics ,Glauber model ,Nuclear Experiment ,total reaction cross sections ,radioactive nuclear beams - Abstract
Total reaction cross sections, sigma(R), on Si were measured near 40 A MeV for the proton-halo candidate N-12 and the two-proton-halo candidate Ne-17, and were compared with sigma(R) for other light proton-rich nuclei. The A-dependence shows enhanced sigma(R)s for N-12 and Ne-17, relative to their neighbors, but the effect is smaller than for B-8 which has been argued to have a proton halo. In general, nuclei with loosely bound last protons (S-p less than or equal to 1.5 MeV) have significantly larger sigma(R)S than their neighbors. Cross sections for charge-removal from N-12 and Ne-17 also were obtained. (C) 1998 Elsevier Science B.V.
- Published
- 1998
6. Total reaction and 2n-removal cross sections of 20-60A MeV He-4,He-6,He-8, Li-6-9,Li-11, and Be-10 on Si
- Author
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Warner, RE, Patty, RA, Voyles, PM, Nadasen, A, Becchetti, FD, Brown, JA, Esbensen, H, Galonsky, A, Kolata, JJ, Kruse, J, Lee, MY, Ronningen, RM, Schwandt, P, vonSchwarzenberg, J, Sherrill, BM, Subotić, Krunoslav M., Wang, Jiansong, and Zecher, P
- Abstract
Total reaction cross sections, sigma R, of 20-60A MeV He-4,He-6,He-8, Li-6-9,Li-11, and Be-10 were measured by injecting magnetically separated, focused, monoenergetic, identified secondary beams of those projectiles into a Si detector telescope and measuring their energy-deposition spectra. These sigma(R)s accurate to about 3%, were compared with predictions of optical, strong absorption, and microscopic models. The latter gave the best overall fit to the data, providing long-tailed matter densities were assumed. The best available optical potentials generally overpredicted the data by about 10%. Strong absorption calculations, in which the isospin-dependant term is quite important, were often unsuccessful, especially for projectiles with large neutron excess. Two-neutron removal cross sections were measured for He-6 and Li-11; the Li-11 data were slightly overpredicted by a microscopic model which includes correlation effects for the Li-11 valence neutrons. Both 2n and 4n removal from He-8 were observed, in about a 2:1 ratio. Subtraction analysis of the data indicates that He-4 is a good core within He-6 and He-8, as is Li-9 within Li-11.
- Published
- 1996
7. UNUSUAL ENERGY-DEPENDENCE OF THE TOTAL NUCLEAR-REACTION CROSS-SECTION FOR A SECONDARY ISOMERIC NUCLEAR BEAM (F-18(M), J(PI)=5(+), E(X)=1.1 MEV)
- Author
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ROBERTS, DA, BECCHETTI, FD, BROWN, JA, JANECKE, J, PHAM, K, ODONNELL, TW, WARNER, RE, RONNINGEN, RM, WILSCHUT, HW, and KVI - Center for Advanced Radiation Technology
- Abstract
A primary O-17 beam has been used to produce a 22.3 MeV/nucleon F-18(m) isomeric secondary beam via a single nucleon transfer reaction on a carbon target. The total nuclear reaction cross sections for F-18(m) and F-18(g.s.) in silicon were measured in a stack of seven silicon solid-state detectors. The cross section for F-18(m) exhibits some unusual features at low energy not seen for F-18(g.s.) or other ions.
- Published
- 1995
8. TOTAL NUCLEAR-REACTION PROBABILITY OF 270 TO 390 N-14 IONS IN SI AND CSI
- Author
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WARNER, RE, CARPENTER, CL, FETTER, JM, WAITE, WF, WILSCHUT, HW, HOOGDUIN, JM, and KVI - Center for Advanced Radiation Technology
- Subjects
REACTION CROSS-SECTIONS ,Physics::Instrumentation and Detectors ,C-12 ,PB-208 ,ZR-90 ,Nuclear Experiment - Abstract
A magnetic spectrograph and position-sensitive detectors were used to measure the total nuclear reaction probability eta(R) for alpha + CsI at 116 MeV, N-14 + CsI at 265 and 385 MeV, and N-14 + Si at 271 and 390 MeV. From these eta(R)'s, average reaction cross sections sigma(R) were deduced for sigma and N-14 on CsI; these agree with optical and strong absorption model predictions. These same models predict sigma(R)'s for N-14 + Si which vary by nearly a factor of 2; our measurement favors the smaller predictions.
- Published
- 1993
9. MICROSCOPIC CALCULATIONS OF LOW-ENERGY REACTION CROSS-SECTIONS
- Author
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WARNER, RE, FELDER, GN, and KVI - Center for Advanced Radiation Technology
- Published
- 1990
10. Are we restoring functional fens? - The outcomes of restoration projects in fens re-analysed with plant functional traits.
- Author
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Agata Klimkowska, Klara Goldstein, Tomasz Wyszomirski, Łukasz Kozub, Mateusz Wilk, Camiel Aggenbach, Jan P Bakker, Heinrich Belting, Boudewijn Beltman, Volker Blüml, Yzaak De Vries, Beate Geiger-Udod, Ab P Grootjans, Petter Hedberg, Henk J Jager, Dick Kerkhof, Johannes Kollmann, Paweł Pawlikowski, Elisabeth Pleyl, Warner Reinink, Hakan Rydin, Joachim Schrautzer, Jan Sliva, Robert Stańko, Sebastian Sundberg, Tiemo Timmermann, Lesław Wołejko, Rob F van der Burg, Dick van der Hoek, Jose M H van Diggelen, Adrie van Heerden, Loekie van Tweel, Kees Vegelin, and Wiktor Kotowski
- Subjects
Medicine ,Science - Abstract
In peatland restoration we often lack an information whether re-established ecosystems are functionally similar to non-degraded ones. We re-analysed the long-term outcomes of restoration on vegetation and plant functional traits in 38 European fens restored by rewetting (18 sites) and topsoil removal (20 sites). We used traits related to nutrient acquisition strategies, competitiveness, seed traits, and used single- and multi-trait metrics. A separate set of vegetation records from near-natural fens with diverse plant communities was used to generate reference values to aid the comparisons. We found that both restoration methods enhanced the similarity of species composition to non-degraded systems but trait analysis revealed differences between the two approaches. Traits linked to nutrient acquisition strategies indicated that topsoil removal was more effective than rewetting. After topsoil removal competitive species in plant communities had decreased, while stress-tolerant species had increased. A substantial reduction in nutrient availability ruled out the effect of initial disturbance. An ability to survive and grow in anoxic conditions was enhanced after restoration, but the reference values were not achieved. Rewetting was more effective than topsoil removal in restricting variation in traits values permitted in re-developing vegetation. We found no indication of a shift towards reference in seed traits, which suggested that dispersal constraint and colonization deficit can be a widespread phenomena. Two functional diversity indices: functional richness and functional dispersion showed response to restoration and shifted values towards reference mires and away from the degraded systems. We concluded that targeting only one type of environmental stressor does not lead to a recovery of fens, as it provides insufficient level of stress to restore a functional ecosystem. In general, restoration efforts do not ensure the re-establishment and long-term persistence of fens. Restoration efforts result in recovery of fen ecosystems, confirmed with our functional trait analysis, although more rigid actions are needed for restoring fully functional mires, by achieving high and constant levels of anoxia and nutrient stresses.
- Published
- 2019
- Full Text
- View/download PDF
11. JOINT MOMENTUM DISTRIBUTION OF P+N IN LI-6
- Author
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WARNER, RE, OKIHANA, A, FUJIWARA, M, MATSUOKA, N, TAMURA, K, TOSAKI, M, OHSAWA, T, FUKUNAGA, K, KAKIGI, S, KASAGI, J, KOORI, N, and KVI - Center for Advanced Radiation Technology
- Published
- 1989
12. Robot-Assisted vs Laparoscopic Right Hemicolectomy in Octogenarians.
- Author
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Srinath H, Kim TJ, Mor IJ, and Warner RE
- Subjects
- Aged, Aged, 80 and over, Colectomy adverse effects, Colectomy methods, Cross-Sectional Studies, Humans, Length of Stay, Octogenarians, Postoperative Complications epidemiology, Retrospective Studies, Treatment Outcome, Laparoscopy adverse effects, Laparoscopy methods, Robotics
- Abstract
Objective: With increasing age, there is greater need for right-sided colonic resections than its left-sided counterparts. Older age is associated with limited physical and functional status, which carries greater operative risk. Improvements in robotic surgery questions its role, especially in older adults, compared with laparoscopy. The objective is to investigate whether robotic right hemicolectomy (RRH) is as safe and effective as laparoscopic right hemicolectomy (LHR) in octogenarians (age >80 years)., Design: Retrospective cross-sectional analysis., Settings and Participants: Octogenarians who underwent elective RRH and LRH by the Tweed Colorectal Group over 5 years., Methods: Complications within 30 days, age, gender, smoking status, immunocompromised status, presence of diabetes, American Society of Anesthesiologists (ASA) physical status score, preoperative Eastern Cooperative Oncology Group (ECOG) performance status, mFI-5 (modified frailty index), operative time, method of anastomosis, postoperative length of stay (LOS), need for rehabilitation, and short-term oncologic data using the TNM criteria were compared using univariate and multivariate analysis., Results: Seventy-eight elective patients were included. LRH and RRH groups had similar median ages, gender distribution, and comorbidities. Across the entire cohort, 61.5% had no 30-day complications. RRH had nonsignificantly shorter operative time but significantly shorter LOS (5 vs 8 days) and fewer minor complications (24.5% vs 34.5%). Major complications and overall complications were not significantly different between the groups. Lower ASA and ECOG status were associated with lower complication rates across both groups. Oncologic resection outcomes were similar for both approaches., Conclusions and Implications: RRH does not confer an increased risk of complications compared to LRH in the octogenarians and may be a viable alternative in the field of minimally invasive surgery for older patients. Future research should focus on intracorporeal anastomoses, as it is a potential confounder leading to the shorter inpatient LOS shown in our robotic group., (Crown Copyright © 2022. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
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13. EVIDENCE OF LEPTOSPIRA SEROVARS IN WILDLIFE AND LEPTOSPIRAL DNA IN WATER SOURCES IN A NATURAL AREA IN EAST-CENTRAL ILLINOIS, USA.
- Author
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Grimm K, Rivera NA, Fredebaugh-Siller S, Weng HY, Warner RE, Maddox CW, and Mateus-Pinilla NE
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- Aging, Animals, Female, Illinois epidemiology, Leptospirosis epidemiology, Leptospirosis microbiology, Male, Water Microbiology, DNA, Bacterial isolation & purification, Leptospira isolation & purification, Leptospirosis veterinary, Mammals microbiology
- Abstract
We identified seven Leptospira serovars in wildlife and the presence of leptospiral DNA in water sources at a natural area within a fragmented habitat in Illinois, US. These serovars have been implicated in domestic animal and human leptospirosis, a reemerging zoonotic disease, whose reservoirs include wildlife and domestic animals. We live trapped medium-sized mammals ( n =351) near building (H-sites) or forest sites (F-sites). Using serology, we evaluated exposure to Leptospira ( L. interrogans serovars Autumnalis, Bratislava, Canicola, Icterohaemorrhagiae, Pomona; L. kirschneri serovar Grippotyphosa; L. borgpetersenii serovar Hardjo). Using PCR, we tested for the presence of leptospires in eight water samples (ponds, creeks, and rainwater runoff) collected near trapping sites. We identified antibody titers in raccoons ( Procyon lotor ; 121/221) and Virginia opossums ( Didelphis virginiana ; 60/112), but not in feral cats ( Felis catus ; 0/18). We found significant differences in overall Leptospira seroprevalence between years ( P =0.043) and animal's age in 2008 ( P =0.005) and 2009 ( P =0.003). Serovars Autumnalis, Bratislava, and Grippotyphosa showed significant differences among age groups with the highest seroprevalence in adults. Females had a higher seroprevalence for Icterohaemorragiae in 2008 ( P =0.003) and Hardjo in 2009 ( P =0.041). Risk of exposure to Leptospira was higher at F-sites compared to H-sites (odds ratio 2.3, 95% confidence interval 1.3-3.9, P =0.002). We captured more animals with titers >1:800 at H-sites, but there was no association between titer levels and capture site. Six of eight water sources were Leptospira -positive; however, there was no correlation between trapping locations of seropositive animals and positive water sources. Natural areas create opportunities for interspecies interactions, favoring leptospires transmission across species. Understanding that Leptospira serovars are present in natural areas is an integral part of the safe human and pet recreational use of these areas. Our study should raise awareness and build on public education designed to prevent disease transmission between species.
- Published
- 2020
14. Environmental conditions for Jamestown Canyon virus correlated with population-level resource selection by white-tailed deer in a suburban landscape.
- Author
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Hollis-Etter KM, Montgomery RA, Etter DR, Anchor CL, Chelsvig JE, Warner RE, Grimstad PR, Lovin DD, and Godsey MS Jr
- Subjects
- Animals, Bunyaviridae Infections epidemiology, Bunyaviridae Infections transmission, Climate, Deer blood, Disease Reservoirs, Disease Vectors, Illinois, Serologic Tests veterinary, Bunyaviridae Infections virology, Deer virology, Ecosystem, Encephalitis Virus, California pathogenicity
- Abstract
Suburban landscapes can alter spatial patterns by white-tailed deer (Odocoileus virginianus) and increase animal contact with vectors, pathogens, and humans. Close-contact relationships at a landscape level can have broad implications for disease epidemiology. From 1995-1999, we captured and radio-collared 41 deer in two suburban forest preserves in Chicago, Illinois. We collected blood to determine if animals were seronegative or seropositive for Jamestown Canyon virus and tracked deer movements within suburban habitats. We developed utilization distributions at the population-level and evaluated resource selection for seronegative and seropositive deer. We used maximum likelihood estimation for model selection via Akaike information criterion and then restricted maximum likelihood estimation to attain unbiased estimates of the parameters in the top-ranking models. The top-ranking model describing the resource selection of seronegative deer received almost the full weight of evidence (Akaike information criterion ωi = 0.93), and included the proportion of wetlands, precipitation in year t, and an interaction of the proportion of wetlands and precipitation in year t. The top-ranking model describing resource selection of seropositive deer received the full weight of evidence (Akaike information criterion ωi = 1.00). The model included distance to nearest populated place, distance to nearest river, length of road in each grid cell, precipitation in year t, and an interaction of the length of road in each grid cell and precipitation in year t. These results are valuable for mapping the spatial configuration of hotspots for Jamestown Canyon virus and could be used to educate local residents and recreationalists to reduce human exposure., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
- Full Text
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15. Suburban white-tailed deer seropositive for Toxoplasma gondii from Chicago, Illinois.
- Author
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Hollis-Etter KM, Anchor CL, Chelsvig JE, Dubey JP, and Warner RE
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- Animals, Animals, Wild, Chicago epidemiology, Female, Forests, Humans, Logistic Models, Male, Seroepidemiologic Studies, Toxoplasmosis parasitology, Toxoplasmosis, Animal parasitology, Zoonoses parasitology, Antibodies, Protozoan blood, Deer parasitology, Toxoplasma immunology, Toxoplasmosis epidemiology, Toxoplasmosis, Animal epidemiology, Zoonoses epidemiology
- Abstract
The presence and abundance of vertebrates influences the circulation of zoonotic diseases. White-tailed deer (Odocoileus virginianus) are widely distributed in North America and deer densities are frequently high in unhunted areas, including most major metropolitan regions. This study investigated the seroprevalence for Toxoplasma gondii from live-captured and culled deer sampled in two suburban forest preserves around Chicago, Illinois, from 1995 to 1999. Seroprevalence for T. gondii was 55.9% (n = 443) and was significantly higher at the northern study site, Des Plaines. Seroprevalence for T. gondii varied by year and month. Multivariate logistic regression (LR) screened main effect variables (age, sex, site, year, and month) by backward stepwise elimination. The final LR model for T. gondii contained all main effect variables. This study provides baseline data for future T. gondii suburban deer studies and information to public health and wildlife officials regarding the prevalence a parasitic pathogen present in two public forest preserves in Chicago, Illinois.
- Published
- 2019
- Full Text
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16. Ixodes scapularis (Acari: Ixodidae) distribution surveys in the Chicago metropolitan region.
- Author
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Rydzewski J, Mateus-Pinilla N, Warner RE, Nelson JA, and Velat TC
- Subjects
- Animals, Chicago, Humans, Population Density, Arthropod Vectors, Ixodes
- Abstract
Considering recent studies confirming an increased risk of contracting Lyme disease near metropolitan Chicago, we surveyed a more comprehensive area to assess whether the geographical distribution and establishment of Ixodes scapularis (Say) populations across northeast Illinois are widespread or limited in occurrence. From May through October 2008 and from April through October 2009, 602 I. scapularis ticks of all three life stages (larva, nymph, adult) were collected from sites in Cook, DuPage, Lake, and McHenry counties in northeast Illinois. The surveys were conducted by drag sampling vegetation in public-access forested areas. I. scapularis comprised 56.4% of ticks collected (n = 1,067) at 17 of 32 survey sites. In addition, four other tick species were incidentally collected: Dermacentor variabilis (Say), Haemaphysalis leporispalustris (Packard), Ixodes dentatus (Marx), and Amblyomma americanum (L.). This study updates the I. scapularis distribution in northeast Illinois. Our random sampling of suitable tick habitats across a large geographic area of the Chicago metropolitan area suggests a widespread human exposure to I. scapularis, and, potentially, to their associated pathogens throughout the region. These results prompt continued monitoring and investigation of the distribution, emergence, and expansion of I. scapularis populations and Borrelia burgdorferi transmission within this heavily populated region of Illinois.
- Published
- 2012
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17. Effects of enzyme loading and β-glucosidase supplementation on enzymatic hydrolysis of switchgrass processed by leading pretreatment technologies.
- Author
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Pallapolu VR, Lee YY, Garlock RJ, Balan V, Dale BE, Kim Y, Mosier NS, Ladisch MR, Falls M, Holtzapple MT, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, and Warner RE
- Subjects
- Cellobiose metabolism, Glucans metabolism, Glucose metabolism, Hydrolysis, Panicum drug effects, Biotechnology methods, Panicum metabolism, beta-Glucosidase metabolism
- Abstract
The objective of this work is to investigate the effects of cellulase loading and β-glucosidase supplementation on enzymatic hydrolysis of pretreated Dacotah switchgrass. To assess the difference among various pretreatment methods, the profiles of sugars and intermediates were determined for differently treated substrates. For all pretreatments, 72 h glucan/xylan digestibilities increased sharply with enzyme loading up to 25mg protein/g-glucan, after which the response varied depending on the pretreatment method. For a fixed level of enzyme loading, dilute sulfuric acid (DA), SO(2), and Lime pretreatments exhibited higher digestibility than the soaking in aqueous ammonia (SAA) and ammonia fiber expansion (AFEX). Supplementation of Novozyme-188 to Spezyme-CP improved the 72 h glucan digestibility only for the SAA treated samples. The effect of β-glucosidase supplementation was discernible only at the early phase of hydrolysis where accumulation of cellobiose and oligomers is significant. Addition of β-glucosidase increased the xylan digestibility of alkaline treated samples due to the β-xylosidase activity present in Novozyme-188., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
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18. Comparative material balances around pretreatment technologies for the conversion of switchgrass to soluble sugars.
- Author
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Garlock RJ, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Holtzapple MT, Falls M, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, and Warner RE
- Subjects
- Biomass, Cell Wall metabolism, Glucose analysis, Hydrolysis, Solubility, Xylose analysis, Biotechnology methods, Carbohydrate Metabolism, Panicum metabolism, Polymers metabolism
- Abstract
For this project, six chemical pretreatments were compared for the Consortium for Applied Fundamentals and Innovation (CAFI): ammonia fiber expansion (AFEX), dilute sulfuric acid (DA), lime, liquid hot water (LHW), soaking in aqueous ammonia (SAA), and sulfur dioxide (SO(2)). For each pretreatment, a material balance was analyzed around the pretreatment, optional post-washing step, and enzymatic hydrolysis of Dacotah switchgrass. All pretreatments+enzymatic hydrolysis solubilized over two-thirds of the available glucan and xylan. Lime, post-washed LHW, and SO(2) achieved >83% total glucose yields. Lime, post-washed AFEX, and DA achieved >83% total xylose yields. Alkaline pretreatments, except AFEX, solubilized the most lignin and a portion of the xylan as xylo-oligomers. As pretreatment pH decreased, total solubilized xylan and released monomeric xylose increased. Low temperature-long time or high temperature-short time pretreatments are necessary for high glucose release from late-harvest Dacotah switchgrass but high temperatures may cause xylose degradation., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
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19. Process and technoeconomic analysis of leading pretreatment technologies for lignocellulosic ethanol production using switchgrass.
- Author
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Tao L, Aden A, Elander RT, Pallapolu VR, Lee YY, Garlock RJ, Balan V, Dale BE, Kim Y, Mosier NS, Ladisch MR, Falls M, Holtzapple MT, Sierra R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Hames B, Thomas S, and Warner RE
- Subjects
- Ammonia pharmacology, Calcium Compounds pharmacology, Carbohydrates analysis, Hot Temperature, Oxides pharmacology, Panicum drug effects, Sulfur Dioxide pharmacology, Sulfuric Acids pharmacology, Water pharmacology, Biotechnology economics, Biotechnology methods, Ethanol economics, Ethanol metabolism, Lignin metabolism, Panicum metabolism
- Abstract
Six biomass pretreatment processes to convert switchgrass to fermentable sugars and ultimately to cellulosic ethanol are compared on a consistent basis in this technoeconomic analysis. The six pretreatment processes are ammonia fiber expansion (AFEX), dilute acid (DA), lime, liquid hot water (LHW), soaking in aqueous ammonia (SAA), and sulfur dioxide-impregnated steam explosion (SO(2)). Each pretreatment process is modeled in the framework of an existing biochemical design model so that systematic variations of process-related changes are consistently captured. The pretreatment area process design and simulation are based on the research data generated within the Biomass Refining Consortium for Applied Fundamentals and Innovation (CAFI) 3 project. Overall ethanol production, total capital investment, and minimum ethanol selling price (MESP) are reported along with selected sensitivity analysis. The results show limited differentiation between the projected economic performances of the pretreatment options, except for processes that exhibit significantly lower monomer sugar and resulting ethanol yields., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
- Full Text
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20. Investigation of enzyme formulation on pretreated switchgrass.
- Author
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Falls M, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Garlock R, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Hames B, Thomas S, Donohoe BS, Vinzant TB, Elander RT, Warner RE, Sierra-Ramirez R, and Holtzapple MT
- Subjects
- Ammonia metabolism, Biomass, Biotechnology economics, Endo-1,4-beta Xylanases metabolism, Glucans metabolism, Hot Temperature, Water, Xylans metabolism, beta-Glucosidase metabolism, Biotechnology methods, Enzymes metabolism, Panicum metabolism
- Abstract
This work studied the benefits of adding different enzyme cocktails (cellulase, xylanase, β-glucosidase) to pretreated switchgrass. Pretreatment methods included ammonia fiber expansion (AFEX), dilute-acid (DA), liquid hot water (LHW), lime, lime+ball-milling, soaking in aqueous ammonia (SAA), and sulfur dioxide (SO(2)). The compositions of the pretreated materials were analyzed and showed a strong correlation between initial xylan composition and the benefits of xylanase addition. Adding xylanase dramatically improved xylan yields for SAA (+8.4%) and AFEX (+6.3%), and showed negligible improvement (0-2%) for the pretreatments with low xylan content (dilute-acid, SO(2)). Xylanase addition also improved overall yields with lime+ball-milling and SO(2) achieving the highest overall yields from pretreated biomass (98.3% and 93.2%, respectively). Lime+ball-milling obtained an enzymatic yield of 92.3kg of sugar digested/kg of protein loaded., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
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21. Application of cellulase and hemicellulase to pure xylan, pure cellulose, and switchgrass solids from leading pretreatments.
- Author
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Shi J, Ebrik MA, Yang B, Garlock RJ, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Holtzapple MT, Falls M, Sierra-Ramirez R, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, Warner RE, and Wyman CE
- Subjects
- Adsorption, Glucose analysis, Hydrolysis, Kinetics, Phosphoric Acids chemistry, Xylose metabolism, Biotechnology methods, Cellulase metabolism, Cellulose metabolism, Glycoside Hydrolases metabolism, Panicum metabolism, Xylans metabolism
- Abstract
Accellerase 1000 cellulase, Spezyme CP cellulase, β-glucosidase, Multifect xylanase, and beta-xylosidase were evaluated for hydrolysis of pure cellulose, pure xylan, and switchgrass solids from leading pretreatments of dilute sulfuric acid, sulfur dioxide, liquid hot water, lime, soaking in aqueous ammonia, and ammonia fiber expansion. Distinctive sugar release patterns were observed from Avicel, phosphoric acid swollen cellulose (PASC), xylan, and pretreated switchgrass solids, with accumulation of significant amounts of xylooligomers during xylan hydrolysis. The strong inhibition of cellulose hydrolysis by xylooligomers could be partially attributed to the negative impact of xylooligomers on cellulase adsorption. The digestibility of pretreated switchgrass varied with pretreatment but could not be consistently correlated to xylan, lignin, or acetyl removal. Initial hydrolysis rates did correlate well with cellulase adsorption capacities for all pretreatments except lime, but more investigation is needed to relate this behavior to physical and compositional properties of pretreated switchgrass., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
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- 2011
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22. Comparative study on enzymatic digestibility of switchgrass varieties and harvests processed by leading pretreatment technologies.
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Kim Y, Mosier NS, Ladisch MR, Pallapolu VR, Lee YY, Garlock R, Balan V, Dale BE, Donohoe BS, Vinzant TB, Elander RT, Falls M, Sierra R, Holtzapple MT, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, and Warner RE
- Subjects
- Hydrolysis, Seasons, Agriculture, Biotechnology methods, Ecotype, Enzymes metabolism, Panicum metabolism
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Feedstock quality of switchgrass for biofuel production depends on many factors such as morphological types, geographic origins, maturity, environmental and cultivation parameters, and storage. We report variability in compositions and enzymatic digestion efficiencies for three cultivars of switchgrass (Alamo, Dacotah and Shawnee), grown and harvested at different locations and seasons. Saccharification yields of switchgrass processed by different pretreatment technologies (AFEX, dilute sulfuric acid, liquid hot water, lime, and soaking in aqueous ammonia) are compared in regards to switchgrass genotypes and harvest seasons. Despite its higher cellulose content per dry mass, Dacotah switchgrass harvested after wintering consistently gave a lower saccharification yield than the other two varieties harvested in the fall. The recalcitrance of upland cultivars and over-wintered switchgrass may require more severe pretreatment conditions. We discuss the key features of different pretreatment technologies and differences in switchgrass cultivars and harvest seasons on hydrolysis performance for the applied pretreatment methods., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
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- 2011
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23. Comparative data on effects of leading pretreatments and enzyme loadings and formulations on sugar yields from different switchgrass sources.
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Wyman CE, Balan V, Dale BE, Elander RT, Falls M, Hames B, Holtzapple MT, Ladisch MR, Lee YY, Mosier N, Pallapolu VR, Shi J, Thomas SR, and Warner RE
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- Ammonia metabolism, Carbohydrates analysis, Carbohydrates isolation & purification, Cellulase metabolism, Ecotype, Endo-1,4-beta Xylanases metabolism, Glucose analysis, Hydrolysis, Panicum cytology, Panicum ultrastructure, Seasons, Xylose analysis, beta-Glucosidase metabolism, Biotechnology methods, Carbohydrates biosynthesis, Enzymes metabolism, Panicum metabolism
- Abstract
Dilute sulfuric acid (DA), sulfur dioxide (SO(2)), liquid hot water (LHW), soaking in aqueous ammonia (SAA), ammonia fiber expansion (AFEX), and lime pretreatments were applied to Alamo, Dacotah, and Shawnee switchgrass. Application of the same analytical methods and material balance approaches facilitated meaningful comparisons of glucose and xylose yields from combined pretreatment and enzymatic hydrolysis. Use of a common supply of cellulase, beta-glucosidase, and xylanase also eased comparisons. All pretreatments enhanced sugar recovery from pretreatment and subsequent enzymatic hydrolysis substantially compared to untreated switchgrass. Adding beta-glucosidase was effective early in enzymatic hydrolysis while cellobiose levels were high but had limited effect on longer term yields at the enzyme loadings applied. Adding xylanase improved yields most for higher pH pretreatments where more xylan was left in the solids. Harvest time had more impact on performance than switchgrass variety, and microscopy showed changes in different features could impact performance by different pretreatments., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
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- 2011
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24. Surface and ultrastructural characterization of raw and pretreated switchgrass.
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Donohoe BS, Vinzant TB, Elander RT, Pallapolu VR, Lee YY, Garlock RJ, Balan V, Dale BE, Kim Y, Mosier NS, Ladisch MR, Falls M, Holtzapple MT, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Hames B, Thomas S, and Warner RE
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- Agriculture, Ammonia metabolism, Cell Wall metabolism, Cell Wall ultrastructure, Color, Ecotype, Hydrolysis, Microfibrils ultrastructure, Panicum cytology, Porosity, Surface Properties, Biotechnology methods, Panicum ultrastructure
- Abstract
The US Department of Energy-funded Biomass Refining CAFI (Consortium for Applied Fundamentals and Innovation) project has developed leading pretreatment technologies for application to switchgrass and has evaluated their effectiveness in recovering sugars from the coupled operations of pretreatment and enzymatic hydrolysis. Key chemical and physical characteristics have been determined for pretreated switchgrass samples. Several analytical microscopy approaches utilizing instruments in the Biomass Surface Characterization Laboratory (BSCL) at the National Renewable Energy Laboratory (NREL) have been applied to untreated and CAFI-pretreated switchgrass samples. The results of this work have shown that each of the CAFI pretreatment approaches on switchgrass result in different structural impacts at the plant tissue, cellular, and cell wall levels. Some of these structural changes can be related to changes in chemical composition upon pretreatment. There are also apparently different structural mechanisms that are responsible for achieving the highest enzymatic hydrolysis sugar yields., (Copyright © 2011. Published by Elsevier Ltd.)
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- 2011
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25. Ixodes scapularis and Borrelia burgdorferi among diverse habitats within a natural area in east-central Illinois.
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Rydzewski J, Mateus-Pinilla N, Warner RE, Hamer S, and Weng HY
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- Animals, Borrelia burgdorferi genetics, Cricetinae, DNA, Bacterial genetics, Disease Reservoirs, Ecosystem, Humans, Illinois epidemiology, Lyme Disease epidemiology, Lyme Disease microbiology, Polymerase Chain Reaction, Prevalence, Rodent Diseases parasitology, Rodent Diseases transmission, Rodentia, Tick Infestations epidemiology, Tick Infestations parasitology, Tick Infestations transmission, Time Factors, Arachnid Vectors microbiology, Borrelia burgdorferi isolation & purification, Ixodes microbiology, Lyme Disease transmission, Rodent Diseases epidemiology, Tick Infestations veterinary
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The distributions of the tick vector, Ixodes scapularis, and of the etiologic agent of Lyme disease, Borrelia burgdorferi (Bb), have continued expanding in Illinois over the past 20 years, but the extent of their spread is not well known. The role of multiple habitats in the establishment and maintenance of I. scapularis and Bb at local scales is not well understood, and the use of integrated approaches to evaluate local scale dynamics is rare. We evaluated habitat diversity and temporal changes of I. scapularis occurrence and Bb infection within a natural area in Piatt County, Illinois, where I. scapularis were first detected in 2002. Small mammals were trapped and attached ticks were collected in young forest, prairie, mature forest, and flood plain sites from 2005 to 2009. Small mammal abundance, and the prevalence (% mammals infested), mean intensity (I. scapularis per infested mammal), and relative density (I. scapularis per mammal trapped) of I. scapularis were computed for each habitat type and compared. Immature I. scapularis were tested for Bb infection using polymerase chain reaction techniques. Out of 2446 trapped small mammals, 388 were infested with I. scapularis. The prairie had the highest diversity of small mammal hosts. Prevalence, mean intensity, and relative density of I. scapularis and prevalence of Bb infection were highest for the prairie and young forest sites; in the former, all infection was associated with the prairie vole, Microtus ochrogaster. The minimum Bb infection prevalence of on-host I. scapularis collected in the natural area was 14% (n=56). Unlike previous studies solely focused on forested areas and Peromyscus leucopus, our study is the first to provide evidence of I. scapularis collected from prairie habitat and other reservoir hosts, particularly M. ochrogaster.
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- 2011
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26. Female sticklebacks transfer information via eggs: effects of maternal experience with predators on offspring.
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Giesing ER, Suski CD, Warner RE, and Bell AM
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- Animals, Behavior, Animal, Female, Ovum growth & development, Predatory Behavior, Smegmamorpha growth & development, Maternal Exposure, Ovum physiology, Smegmamorpha physiology, Stress, Physiological
- Abstract
There is growing evidence that maternal experience influences offspring via non-genetic mechanisms. When female three-spined sticklebacks (Gasterosteus aculeatus) were exposed to the threat of predation, they produced larger eggs with higher cortisol content, which consumed more oxygen shortly after fertilization compared with a control group. As juveniles, the offspring of predator-exposed mothers exhibited tighter shoaling behaviour, an antipredator defence. We did not detect an effect of maternal exposure to predation risk on the somatic growth of fry. Altogether, we found that exposure to an ecologically relevant stressor during egg formation had several long-lasting consequences for offspring, some of which might be mediated by exposure to maternally derived cortisol. These results support the hypothesis that female sticklebacks might influence the development, growth and behaviour of their offspring via eggs to match their future environment.
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- 2011
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27. WITHDRAWN: Comparative Data on Effects of Leading Pretreatments and Enzyme Loadings and Formulations on Sugar Yields from Different Switchgrass Sources.
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Wyman CE, Balan V, Dale BE, Elander RT, Falls M, Hames B, Holtzapple MT, Ladisch MR, Lee YY, Mosier N, Pallapolu VR, Shi J, Thomas SR, and Warner RE
- Abstract
This article has been withdrawn at the request of the author(s) and/or editor. The Publisher apologizes for any inconvenience this may cause. The full Elsevier Policy on Article Withdrawal can be found at http://www.elsevier.com/locate/withdrawalpolicy., (Copyright © 2011. Published by Elsevier Ltd.. All rights reserved.)
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- 2011
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28. Prevalence of antibody to Toxoplasma gondii in terrestrial wildlife in a natural area.
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Fredebaugh SL, Mateus-Pinilla NE, McAllister M, Warner RE, and Weng HY
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- Animals, Cat Diseases transmission, Cats, Cross-Sectional Studies, Female, Illinois epidemiology, Male, Seroepidemiologic Studies, Toxoplasmosis, Animal transmission, Animals, Wild parasitology, Antibodies, Protozoan blood, Cat Diseases epidemiology, Toxoplasma immunology, Toxoplasmosis, Animal epidemiology
- Abstract
We conducted a cross-sectional study from 2008 to 2009 to evaluate the occurrence of feral and wild cats and the risk of Toxoplasma gondii infection in terrestrial wildlife in a natural area in Illinois, USA. Felids are definitive hosts for T. gondii and cats are a key component of rural and urban transmission of T. gondii. We selected four forest sites within the interior of the park and four edge sites within 300 m of human buildings. Feline and wildlife occurrence in the natural area was determined with the use of scent stations, motion-detection cameras, and overnight live trapping. Based on scent stations and trapping, feral cats used building sites more than forest sites (scent stations: P=0.010; trapping: P=0.083). Prevalence of T. gondii antibodies was determined with the use of the indirect immunofluorescent antibody test (IFAT) with a titer of 1:25 considered positive; T. gondii antibodies were detected in wildlife at all sites. Wildlife species were classified as having a large home range (LHR) or a small home range (SHR), based on published estimates and using a cutoff of 100 ha. Small-home-range mammals had a higher prevalence of antibody to T. gondii (odds ratio [OR]=4.2; P=0.018) at sites with a high frequency of cat occurrence (defined as ≥ 9 cat occurrences across three detection methods); this finding indicates that feral cats are the most likely source of environmental contamination. Overall, the prevalence of antibody to T. gondii among LHR mammals was significantly higher than the prevalence among SHR mammals (OR=7.1; P<0.001). Small-home-range mammals are an essential part of T. gondii-antibody prevalence studies and can be used as sentinels for risk of disease exposure to humans and wildlife in natural areas. This study improves our understanding of ecologic drivers behind the occurrence of spatial variation of T. gondii within a natural area.
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- 2011
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29. Management of merkel cell carcinoma: the roles of lymphoscintigraphy, sentinel lymph node biopsy and adjuvant radiotherapy.
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Warner RE, Quinn MJ, Hruby G, Scolyer RA, Uren RF, and Thompson JF
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- Adult, Aged, Aged, 80 and over, Carcinoma, Merkel Cell mortality, Carcinoma, Merkel Cell secondary, Female, Humans, Lymphatic Metastasis, Male, Middle Aged, Radionuclide Imaging, Radiotherapy, Adjuvant, Retrospective Studies, Skin Neoplasms mortality, Skin Neoplasms pathology, Survival Rate, Carcinoma, Merkel Cell radiotherapy, Lymph Nodes diagnostic imaging, Neoplasm Recurrence, Local diagnostic imaging, Sentinel Lymph Node Biopsy, Skin Neoplasms radiotherapy
- Abstract
Background: Merkel cell carcinoma (MCC) is an uncommon, highly aggressive skin malignancy with a propensity to recur locally and regionally. However, its optimal treatment is uncertain. In this study, we aimed to assess the roles of lymphoscintigraphy and sentinel node (SN) biopsy, as well as radiotherapy, in the treatment of MCC., Patients and Methods: A retrospective analysis of 17 patients diagnosed with MCC (median age 74 years) over a 7-year period (median follow-up 16 months) was performed., Results: Of 11 patients. 3 had a positive SN biopsy and, despite adjuvant radiotherapy, 2 of these 3 developed regional lymph node (RLN) recurrence. Of the remaining 8 patients who had a negative SN biopsy, however, 5 also had RLN recurrences. There were 9 patients who received adjuvant radiotherapy (RT) to the primary site, with no in-field recurrences; and 8 who received RT to their RLN field, with only 2 developing regional nodal recurrences-both were SN biopsy positive. During the follow-up period, 2 patients died, only 1 due to MCC., Conclusion: The results suggest that SN status may not be an accurate predictor of loco-regional recurrence in MCC. However, they strongly reinforce previous reports that radiotherapy, both locally and to regional nodes, provides effective infield disease control.
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- 2008
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30. Modulation of the genotoxicity of pesticides reacted with redox-modified smectite clay.
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Sorensen KC, Stucki JW, Warner RE, Wagner ED, and Plewa MJ
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- 2,4-Dichlorophenoxyacetic Acid toxicity, Animals, Biodegradation, Environmental, CHO Cells, Carbamates toxicity, Clay, Comet Assay, Cricetinae, DNA Damage, Dicamba toxicity, Dose-Response Relationship, Drug, Environmental Pollutants, Herbicides chemistry, Iron chemistry, Iron metabolism, Models, Chemical, Mutagens, Oxygen chemistry, Oxygen metabolism, Pesticides chemistry, Pesticides pharmacology, Aluminum Silicates chemistry, Oxidation-Reduction, Pesticides toxicity, Silicates chemistry
- Abstract
Pesticides are toxic agents intentionally released into the environment; their use raises public health and environmental concerns. In recent years there has been much attention to the biotic degradation of pesticides. Abiotic mechanisms in the soil can contribute to pesticide degradation yet the toxicological impact of such degradation is unclear. This study combines for the first time an investigation into abiotic mechanisms of degradation coupled with toxicological endpoints in mammalian cells. The genotoxicity of three commonly used agricultural pesticides was assessed before and after exposure to redox-modified clay minerals. The objectives of the study were to determine the genotoxicity of 2,4-dichlorophenoxy acetic acid (2,4-D), dicamba, and oxamyl, using single cell gel electrophoresis with Chinese hamster ovary (CHO) cells, and to determine the effect of the iron oxidation state in clay minerals (ferruginous smectite SWa-1) on the genotoxic potency of the pesticides. 2,4-D alone or following reaction with redox-modified clays did not induce DNA damage in CHO cells. Oxamyl alone induced a concentration-dependent increase in genomic DNA damage; however, its genotoxicity declined after reaction with reduced clay minerals. Dicamba was not genotoxic when directly analyzed. When dicamba was reacted with reduced clay, a concentration-dependent increase in genomic DNA damage was observed. This is the first reported case of a pesticide being converted into a genotoxin after exposure to redox-modified smectites. These data introduce a new paradigm on the interaction between redox-modified clays and pesticide-related environmental genotoxicity.
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- 2005
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31. Intersexuality and the cricket frog decline: historic and geographic trends.
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Reeder AL, Ruiz MO, Pessier A, Brown LE, Levengood JM, Phillips CA, Wheeler MB, Warner RE, and Beasley VR
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- Animals, Female, Geography, History, 19th Century, History, 20th Century, Illinois, Male, Museums, Population Dynamics, Ranidae physiology, Disorders of Sex Development history, Disorders of Sex Development veterinary, Ranidae growth & development, Water Pollutants, Chemical poisoning
- Abstract
Exposure to anthropogenic endocrine disruptors has been listed as one of several potential causes of amphibian declines in recent years. We examined gonads of 814 cricket frogs (Acris crepitans) collected in Illinois and deposited in museum collections to elucidate relationships between the decline of this species in Illinois and the spatial and temporal distribution of individuals with intersex gonads. Compared with the preorganochlorine era studied (1852-1929), the percentage of intersex cricket frogs increased during the period of industrial growth and initial uses of polychlorinated biphenyls (PCBs) (1930-1945), was highest during the greatest manufacture and use of p,p-dichlorodiphenyltrichloroethane (DDT) and PCBs (1946-1959), began declining with the increase in public concern and environmental regulations that reduced and then prevented sales of DDT in the United States (1960-1979), and continued to decline through the period of gradual reductions in environmental residues of organochlorine pesticides and PCBs in the midwestern United States (1980-2001). The proportion of intersex individuals among those frogs was highest in the heavily industrialized and urbanized northeastern portion of Illinois, intermediate in the intensively farmed central and northwestern areas, and lowest in the less intensively managed and ecologically more diverse southern part of the state. Records of deposits of cricket frog specimens into museum collections indicate a marked reduction in numbers from northeastern Illinois in recent decades. These findings are consistent with the hypothesis that endocrine disruption contributed to the decline of cricket frogs in Illinois.
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- 2005
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32. Alteration of mammalian-cell toxicity of pesticides by structural iron(II) in ferruginous smectite.
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Sorensen KC, Stucki JW, Warner RE, and Plewa MJ
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- Agriculture, Aluminum Silicates, Animals, CHO Cells, Clay, Cricetinae, Iron chemistry, Oxidation-Reduction, Pesticides chemistry, Toxicity Tests, Pesticides toxicity, Silicates chemistry
- Abstract
The ultimate concern over pesticides in the environment is their toxic impact on nontarget organisms, including humans. Soil clays are known to interact with pesticides in ways that decrease the concentration of the parent compound in the soil solution (adsorption, sequestration, degradation). These phenomena are generally regarded as beneficial, but toxicological verification is lacking. In this study, mammalian-cell cytotoxicity of four commonly used agricultural chemicals (2,4-D, alachlor, dicamba, and oxamyl) was assessed after exposure to either reduced or oxidized ferruginous smectite (SWa-1). Results revealed that treatment with reduced smectite produced differential effects on mammalian-cell viability, depending on the pesticide. Oxamyl and alachlor reacted with reduced SWa-1 showed a significant decrease in their overall cytotoxic potential. Dicamba reacted with the reduced-clay treatment and generated products that were more toxic than the parent pesticide. Finally, no differences were observed between redox treatments for 2,4-D. The significance of these results is that oxidized smectites have virtually no influence on the toxicity of pesticides, whereas reduced-Fe smectite plays an important role in altering the cytotoxic potential of agricultural pesticides. The Fe oxidation state of clay minerals should, therefore, be taken into account in pesticide management programs.
- Published
- 2004
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33. West Nile virus and high death rate in American crows.
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Yaremych SA, Warner RE, Mankin PC, Brawn JD, Raim A, and Novak R
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- Animals, Antibodies, Viral blood, Female, Male, Bird Diseases mortality, Songbirds virology, West Nile virus isolation & purification
- Abstract
We document effects of West Nile virus (WNV) on American Crows. More than two thirds of our crows died of WNV infection, peaking when the proportion of infected mosquitoes at roosts was greatest. WNV antibody prevalence in crows was low. Local ecologic effects can be dramatic as WNV inhabits new areas.
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- 2004
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34. West Nile virus detection in American crows.
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Yaremych SA, Warner RE, Van de Wyngaerde MT, Ringia AM, Lampman R, and Novak RJ
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- Animals, Capsid immunology, Feces virology, Illinois, Immunoassay methods, Immunoassay statistics & numerical data, Predictive Value of Tests, Reverse Transcriptase Polymerase Chain Reaction, Saliva virology, West Nile virus genetics, West Nile virus immunology, Songbirds virology, West Nile virus isolation & purification
- Published
- 2003
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35. Attenuation of autoimmune disease in Fas-deficient mice by treatment with a cytotoxic benzodiazepine.
- Author
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Bednarski JJ, Warner RE, Rao T, Leonetti F, Yung R, Richardson BC, Johnson KJ, Ellman JA, Opipari AW Jr, and Glick GD
- Subjects
- Adjuvants, Immunologic administration & dosage, Animals, Antibodies, Antinuclear blood, Benzodiazepines administration & dosage, Disease Models, Animal, Disease-Free Survival, Female, Glomerulonephritis drug therapy, Glomerulonephritis pathology, Injections, Intraperitoneal, Kidney drug effects, Kidney pathology, Lupus Nephritis mortality, Lupus Nephritis pathology, Lymphocyte Activation drug effects, Mice, Mice, Inbred BALB C, Mice, Knockout, Survival Rate, Adjuvants, Immunologic therapeutic use, Benzodiazepines therapeutic use, Lupus Nephritis drug therapy, T-Lymphocyte Subsets drug effects, fas Receptor genetics
- Abstract
Objective: Elimination of autoreactive cells relies on Fas-dependent activation-induced cell death mechanisms, an important component of peripheral tolerance. Defects in Fas or its cognate ligand lead to inefficient activation-induced cell death and are specific causes of lymphoproliferative and autoimmune diseases. The present study was undertaken to investigate a novel 1,4-benzodiazepine (Bz-423) that induces apoptosis and limits autoimmune disease in NZB/NZW mice, to determine its activity against lupus-like disease associated with defective Fas expression. We investigated the Fas-dependence of its cytotoxic actions, its therapeutic potential in mice deficient in Fas, and its therapeutic mechanism of action., Methods: Primary lymphocytes isolated from Fas-deficient MRL/MpJ-Fas(lpr) (MRL-lpr) mice were tested for sensitivity to Bz-423. Bz-423 was administered to MRL-lpr mice for short (1-week) or long (14-week) periods, and its effects on cell survival were determined along with measures of nephritis, arthritis, antibody titers, and Th subpopulations. BALB/c mice were similarly treated to determine if Bz-423 alters normal immune functions in vivo., Results: Administration of Bz-423 to MRL-lpr mice significantly reduced autoimmune disease including glomerulonephritis and arthritis. Treatment was associated with decreases in CD4+ T cells and an alteration in the Th1/Th2 balance. At the therapeutic dosage, Bz-423 did not interfere with normal T and B cell responses in BALB/c mice, suggesting that this agent is not globally immunosuppressive., Conclusion: Bz-423 is a novel immunomodulatory agent that is active against disease even in the context of defective Fas signaling. It is a leading compound for further investigation into the development of selective therapies for lupus.
- Published
- 2003
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36. Benzodiazepine-induced superoxide signals B cell apoptosis: mechanistic insight and potential therapeutic utility.
- Author
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Blatt NB, Bednarski JJ, Warner RE, Leonetti F, Johnson KM, Boitano A, Yung R, Richardson BC, Johnson KJ, Ellman JA, Opipari AW Jr, and Glick GD
- Subjects
- Animals, Antibodies, Antinuclear blood, Apoptosis physiology, B-Lymphocytes metabolism, Benzodiazepines chemistry, Cell Line, Transformed, Female, Humans, In Vitro Techniques, Lupus Erythematosus, Systemic drug therapy, Lupus Erythematosus, Systemic immunology, Lupus Erythematosus, Systemic metabolism, Mice, Mice, Inbred NZB, Models, Biological, Reactive Oxygen Species metabolism, Signal Transduction drug effects, Apoptosis drug effects, B-Lymphocytes cytology, B-Lymphocytes drug effects, Benzodiazepines pharmacology, Superoxides metabolism
- Abstract
The properties of a proapoptotic 1,4-benzodiazepine, Bz-423, identified through combinatorial chemistry and phenotype screening are described. Bz-423 rapidly generated superoxide (O(2)(-)) in transformed Ramos B cells. This O(2)(-) response originated from mitochondria prior to mitochondrial transmembrane gradient collapse and opening of the permeability transition pore. Bz-423-induced O(2)(-) functioned as an upstream signal that initiated an apoptotic program characterized by cytochrome c release, mitochondrial depolarization, and caspase activation. Pretreatment of cells with agents that either block the formation of Bz-423-induced O(2)(-) or scavenge free radicals attenuated the death cascade, which demonstrated that cell killing by Bz-423 depends on O(2)(-). Parallels between Ramos cells and germinal center B cells prompted experiments to determine whether Bz-423 had therapeutic activity in vivo. This possibility was tested using the (NZB x NZW)F(1) murine model of lupus, in which the pathologically enhanced survival and expansion of germinal center B cells mediate disease. Administration of Bz-423 for 12 weeks specifically controlled germinal center hyperplasia and reduced the histological evidence of glomerulonephritis. Collectively, these studies define a new structure-function relationship for benzodiazepines and point to a new target and mechanism that could be of value for developing improved drugs to manage systemic lupus erythematosus and related disorders.
- Published
- 2002
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37. A phase I study of weekly gemcitabine and docetaxel in patients with advanced cancer: a Hoosier Oncology Group Study.
- Author
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Ganjoo KN, Gordon MS, Sandler AB, Warner RE, Fife K, Poirier S, Seshadri R, and Loehrer PJ
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- Adult, Aged, Aged, 80 and over, Antineoplastic Combined Chemotherapy Protocols adverse effects, Deoxycytidine administration & dosage, Deoxycytidine adverse effects, Docetaxel, Female, Humans, Male, Maximum Tolerated Dose, Middle Aged, Neutropenia chemically induced, Paclitaxel administration & dosage, Paclitaxel adverse effects, Treatment Outcome, Gemcitabine, Antineoplastic Combined Chemotherapy Protocols administration & dosage, Deoxycytidine analogs & derivatives, Neoplasms drug therapy, Paclitaxel analogs & derivatives, Taxoids
- Abstract
Purpose: To determine the maximum tolerated dose (MTD) of weekly gemcitabine plus docetaxel, a dose escalation trial of both drugs was developed with each administered weekly for 3 weeks out of 4., Patients and Methods: Dose levels for gemcitabine (mg/m(2)) and docetaxel (mg/m(2)) were as follows: level 1: 600/25; level 2: 600/35; level 3: 750/35; and level 4: 900/35. Sixteen patients with adequate renal, hepatic, and hematologic function and an Eastern Cooperative Oncology Group performance status of 0-2 were treated. Primary sites included pancreas (12) and others (4)., Results: Three patients were treated at each dose level from level 1 through level 4. The dose-limiting toxicity (DLT) was neutropenia, the maximum tolerated dose being 750 mg/m(2) of gemcitabine and 35 mg/m(2) of docetaxel. No grade 4 nonhematologic toxicity was seen. Three patients had grade 4 neutropenia. Of the 12 patients with pancreatic cancer, 1 had a partial remission and 7 had stable disease with a median duration of 8 weeks., Conclusions: Gemcitabine and docetaxel can be safely administered weekly at a dose of 750 and 35 mg/m(2), respectively. The DLT was neutropenia. Disease stabilization suggests that this may be an active regimen in patients with metastatic pancreatic cancer., (Copyright 2002 S. Karger AG, Basel)
- Published
- 2002
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38. Identification, characterization, and functional analysis of a gene encoding the ferric uptake regulation protein in Bartonella species.
- Author
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Park SY, Kelminson KL, Lee AK, Zhang P, Warner RE, Rehkopf DH, Calderwood SB, and Koehler JE
- Subjects
- Amino Acid Sequence, Bartonella classification, Blotting, Southern, Gene Expression Regulation, Bacterial, Genetic Complementation Test, Humans, Iron metabolism, Molecular Sequence Data, Sequence Analysis, DNA, Vibrio cholerae genetics, Vibrio cholerae metabolism, Bacterial Proteins chemistry, Bacterial Proteins genetics, Bacterial Proteins metabolism, Bartonella genetics, Bartonella metabolism, Repressor Proteins chemistry, Repressor Proteins genetics, Repressor Proteins metabolism
- Abstract
Environmental iron concentrations coordinately regulate transcription of genes involved in iron acquisition and virulence via the ferric uptake regulation (fur) system. We identified and sequenced the fur gene and flanking regions of three Bartonella species. The most notable difference between Bartonella Fur and other Fur proteins was a substantially higher predicted isoelectric point. No promoter activity or Fur autoregulation was detected using a gfp reporter gene fused to the 204 nucleotides immediately upstream of the Bartonella fur gene. Bartonella henselae fur gene expression complemented a Vibrio cholerae fur mutant.
- Published
- 2001
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39. Changes in Upland Wildlife Habitat on Farmland in Illinois 1920-1987
- Author
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Ribic CA, Warner RE, and Mankin PC
- Abstract
/ An index of upland wildlife habitat was developed to investigate patterns and changes in habitat over time, using four years (1920, 1940, 1964, 1987) and the state of Illinois as an example. The index was composed of two subdivisions that described, at the county level, the quantity of wildlife habitat and a third subdivision that described farming disturbances that impacted the quality of the habitat. Data came from the US Census of Agriculture. The first subdivision that reflected quantity of habitat was called the wildlife habitat subdivision and was the sum of percentage woodland on farms, percentage farmland in nonrow crops, and percentage farmland in set-aside programs. The second subdivision that reflected the quantity of habitat was termed the soil-related features subdivision and was the sum of the percentage of farmland that was not highly erodible, the percentage of farmland in soil-protecting crops, and the percentage of farmland in conservation tillage. The third subdivision, reflecting the quality of the habitat, was the farming disturbance subdivision and was the sum of the percentage of grazing and the percentage of land on which fertilizers, pesticides, and herbicides were applied. Overall, major decreases occurred between 1920 and 1987 in the subdivisions reflecting the quantity of wildlife habitat and a major increase occurred in the subdivision associated with farming disturbance, reflecting the intensification of agriculture in the state. However, there was variability throughout the state, with some counties being more favorable to wildlife (as measured by the subdivisions) than others. Most of the changes within the state for the subdivisions reflecting quantity of upland wildlife habitat occurred during 1940 while changes in the farming disturbance subdivision (reflecting habitat quality) occurred in 1964. By 1987, the western and southern parts of Illinois were the most favorable for wildlife as reflected in all three subdivisions. Upland wildlife harvest indices were related to the subdivisions in 1964 and 1987, when harvest indices were available. Cottontail and northern bobwhite harvests were higher in counties with higher amounts of the wildlife habitat subdivision in both years. Cottontail harvest was also higher in counties with lower levels of the farming disturbance subdivision in 1964 and higher levels of soil-related features subdivision in 1987. Indices at the county level have the potential to be used in a multiscale analysis to investigate the impact of policy changes on large-scale areas of the Midwest and to develop regional perspectives of the impacts of agriculture on upland wildlife and their habitats.KEY WORDS: Upland wildlife; Habitat; Agriculture; Illinois
- Published
- 1998
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40. Is there a bound dineutron in 11Li?
- Author
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Ieki K, Galonsky A, Sackett D, Kruse JJ, Lynch WG, Morrissey DJ, Orr NA, Sherrill BM, Winger JA, Deák F, Horváth Á, Kiss Á, Seres Z, Kolata JJ, Warner RE, and Humphrey DL
- Published
- 1996
- Full Text
- View/download PDF
41. Total reaction and 2n-removal cross sections of 20-60A MeV 4,6,8He, 6-9,11Li, and 10Be on Si.
- Author
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Warner RE, Patty RA, Voyles PM, Nadasen A, Becchetti FD, Brown JA, Esbensen H, Galonsky A, Kolata JJ, Kruse J, Lee MY, Ronningen RM, Schwandt P, von Schwarzenberg J, Sherrill BM, Subotic K, Wang J, and Zecher P
- Published
- 1996
- Full Text
- View/download PDF
42. Unique potentials for the elastic scattering of 350 MeV 7Li from 12C and 28Si.
- Author
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Nadasen A, Brusoe J, Farhat J, Stevens T, Williams J, Nieman L, Winfield JS, Warner RE, Becchetti FD, Jänecke JW, Annakkage T, Bajema J, Roberts D, and Govinden HS
- Published
- 1995
- Full Text
- View/download PDF
43. Evidence for a proton halo in 8B: Enhanced total reaction cross sections at 20 to 60 MeV/nucleon.
- Author
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Warner RE, Kelley JH, Zecher P, Becchetti FD, Brown JA, Carpenter CL, Galonsky A, Kruse J, Muthukrishnan A, Nadasen A, Ronningen RM, Schwandt P, Sherrill BM, Wang J, and Winfield JS
- Published
- 1995
- Full Text
- View/download PDF
44. Proton scattering from an excited nucleus (18Fm,J pi =5(+),Ex=1.1 MeV) using a gamma -ray-tagged secondary isomeric nuclear beam.
- Author
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Brown JA, Becchetti FD, Jänecke J, Roberts DA, Litzenberg DW, O'Donnell TW, Warner RE, Orr NA, and Ronningen RM
- Published
- 1995
- Full Text
- View/download PDF
45. Elastic scattering of 10 MeV 6He from 12C, natNi, and 197Au.
- Author
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Warner RE, Becchetti FD, Jänecke JW, Roberts DA, Butts D, Carpenter CL, Fetter JM, Muthukrishnan A, Kolata JJ, Lamkin K, Belbot M, Zahar M, Galonsky A, Ieki K, and Zecher P
- Published
- 1995
- Full Text
- View/download PDF
46. Reply to "Comment on 'Elastic scattering of 318 MeV 6Li from 12C and 28Si: Unique phenomenological and folding-model potentials' and the validity of the M3Y effective interaction"
- Author
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Nadasen A, Winfield J, Schwandt P, Farhat J, Nieman L, Warner RE, Becchetti FD, Jänecke JW, and Anantaraman N
- Published
- 1994
- Full Text
- View/download PDF
47. 4He(4He,3He)5He(g.s.) reaction at 118 MeV, and its distorted wave Born approximation interpretation.
- Author
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Warner RE, Fetter JM, Swartz RA, Okihana A, Konishi T, Yoshimura T, Kunz PD, Fujiwara M, Fukunaga K, Kakigi S, Hayashi T, Kasagi J, and Koori N
- Published
- 1994
- Full Text
- View/download PDF
48. Systematics of 8Li-induced radioactive beam reactions: E=13-20 MeV.
- Author
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Becchetti FD, Liu WZ, Ashktorab K, Bajema JF, Brown JA, Jänecke JW, Roberts DA, Kolata JJ, Lamkin KL, Morsad A, Smith RJ, Kong XJ, and Warner RE
- Published
- 1993
- Full Text
- View/download PDF
49. Total nuclear reaction probability of 270 to 390 (1)4N ions in Si and CsI.
- Author
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Warner RE, Carpenter CL, Fetter JM, Waite WF, Wilschut HW, and Hoogduin JM
- Published
- 1993
- Full Text
- View/download PDF
50. Electromagnetic excitation of 11Li.
- Author
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Sackett D, Ieki K, Galonsky A, Bertulani CA, Esbensen H, Kruse JJ, Lynch WG, Morrissey DJ, Orr NA, Sherrill BM, Schulz H, Sustich A, Winger JA, Deák F, Horváth Á, Kiss Á, Seres Z, Kolata JJ, Warner RE, and Humphrey DL
- Published
- 1993
- Full Text
- View/download PDF
Catalog
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