1. Time Domain Simulations of Single Molecule Raman Scattering
- Author
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Eric J. Bylaska, Wayne P. Hess, Patrick Z. El-Khoury, Ashish Bhattarai, Edoardo Aprà, Kevin T. Crampton, and Niranjan Govind
- Subjects
Chemistry ,Non-equilibrium thermodynamics ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,symbols.namesake ,Polarizability ,Chemical physics ,Phase space ,symbols ,Molecule ,Time domain ,Physical and Theoretical Chemistry ,0210 nano-technology ,Spectroscopy ,Raman spectroscopy ,Raman scattering - Abstract
Nonequilibrium chemical phenomena are known to play an important role in single molecule microscopy and spectroscopy. Herein, we explore these effects through ab initio molecular dynamics (AIMD)-based Raman spectral simulations. We target an isolated aromatic thiol (thiobenzonitrile, TBN) as a prototypical molecular system. We first show that the essential features contained in the ensemble-averaged Raman spectrum of TBN can be reproduced by averaging over 18 short AIMD trajectories spanning a total simulation time of ∼60 ps. This involved more than 90 000 polarizability calculations at the B3LYP/def2-TZVP level of theory. We then illustrate that the short trajectories (∼3.3 ps total simulation time), where the accessible phase space is not fully sampled, provide a starting point for understanding key features that are often observed in measurements targeting single molecules. Our results suggest that a complete understanding of single molecule Raman scattering needs to account for molecular conformational flexibility and nonequilibrium chemical phenomena in addition to local optical fields and modified selection rules. The former effects are well-captured using the described AIMD-based single molecule Raman spectral simulations.
- Published
- 2018