43 results on '"Wei-Liang Zhu"'
Search Results
2. Further New Diterpenoids as PTP1B Inhibitors from the Xisha Soft Coral Sinularia polydactyla
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Fei Ye, Zheng-Dan Zhu, Yu-Cheng Gu, Jia Li, Wei-Liang Zhu, and Yue-Wei Guo
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Sinularia polydactyla ,diterpenoids ,PTP1B inhibitory activity ,Biology (General) ,QH301-705.5 - Abstract
A new prenyleudesmane type diterpene, sinupol (8), and a new capnosane type diterpenoid, sinulacetate (9), were isolated from the Xisha soft coral Sinularia polydactyla along with five known related diterpenes (4–7 and 10). Their structures, including absolute configurations, were determined by extensive spectroscopic analysis, the comparison of their NMR data with those of related compounds, and time-dependent density functional theory electronic circular dichroism (TDDFT ECD) calculations. Both new compounds (8 and 9) exhibited promising inhibitory activity against protein tyrosine phosphatase 1B (PTP1B), a potential drug target for the treatment of type II diabetes and obesity.
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- 2018
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3. Pharmacological characterization of the small molecule 03A10 as an inhibitor of α-synuclein aggregation for Parkinson’s disease treatment
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Qing Wang, Sheng Yao, Ze-xian Yang, Chen Zhou, Yu Zhang, Ye Zhang, Lei Zhang, Jin-tian Li, Zhi-jian Xu, Wei-liang Zhu, Nai-xia Zhang, Yang Ye, and Lin-yin Feng
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Pharmacology ,Pharmacology (medical) ,General Medicine - Published
- 2023
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4. Distal mutation V486M disrupts the catalytic activity of DPP4 by affecting the flap of the propeller domain
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Teng-teng Li, Cheng Peng, Ji-qiu Wang, Zhi-jian Xu, Ming-bo Su, Jia Li, Wei-liang Zhu, and Jing-ya Li
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Pharmacology ,Dipeptidyl Peptidase 4 ,enzymatic activity ,General Medicine ,DPP4 ,distal mutation ,Article ,molecular dynamics simulation ,Diabetes Mellitus, Type 2 ,Glucagon-Like Peptide 1 ,Mutation ,Humans ,structure-function mechanism ,Pharmacology (medical) - Abstract
Dipeptidyl peptidase-4 (DPP4) plays a crucial role in regulating the bioactivity of glucagon-like peptide-1 (GLP-1) that enhances insulin secretion and pancreatic β-cell proliferation, making it a therapeutic target for type 2 diabetes. Although the crystal structure of DPP4 has been determined, its structure-function mechanism is largely unknown. Here, we examined the biochemical properties of sporadic human DPP4 mutations distal from its catalytic site, among which V486M ablates DPP4 dimerization and causes loss of enzymatic activity. Unbiased molecular dynamics simulations revealed that the distal V486M mutation induces a local conformational collapse in a β-propeller loop (residues 234–260, defined as the flap) and disrupts the dimerization of DPP4. The “open/closed” conformational transitions of the flap whereby capping the active site, are involved in the enzymatic activity of DPP4. Further site-directed mutagenesis guided by theoretical predictions verified the importance of the conformational dynamics of the flap for the enzymatic activity of DPP4. Therefore, the current studies that combined theoretical modeling and experimental identification, provide important insights into the biological function of DPP4 and allow for the evaluation of directed DPP4 genetic mutations before initiating clinical applications and drug development.
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- 2021
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5. [A new hexenol glycoside from Buddleja officinalis]
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Ze-Hai, Long, Bing-Yi, Li, Qi-Yao, Wang, Bo, Li, Yong, Zhang, Qi, Jia, Yi-Ming, Li, and Wei-Liang, Zhu
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Cardiac Glycosides ,Plant Extracts ,Glycosides ,Buddleja - Abstract
The chemical constituents of the flower buds of Buddleja officinalis were investigated in this study. Eight compounds were isolated from the water extract of B. officinalis by column chromatography, and their structures were elucidated on the basis of physicochemical properties and spectral data. These compounds were identified as(Z)-hex-3-en-1-ol-1-O-β-D-glucopyranosyl-(1→2)-[β-D-xylcopyranosyl-(1→6)]-β-D-glucopyranoside(1), ebracteatoside B(2), jasmonic acid-11-O-β-D-glucopyranoside(3), 6-hydroxyluteolin-7-O-β-D-glucopyranoside(4), luteolin-7-O-galacturonide(5), vicenin-2(6), decaffeoylverbascoside(7), and 6-O-(E)-feruloyl-D-glucopyranoside(8). Compound 1 is a new 3-hexenol glycoside. Compounds 2, 3, and 6 were isolated from Buddleja genus for the first time, and compounds 4 and 5 were isolated from this plant for the first time.
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- 2021
6. Hepatic Artery Infusion Pump Combined With Systemic Chemotherapy for Patients With Liver Metastases From Breast Carcinoma
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Jiemin Zhao, Ye Yuan, Jun-Jun Wang, Wei-Liang Zhu, Hongbing Shi, Weiguang Qiang, and Wenwei Hu
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Adult ,Cancer Research ,medicine.medical_specialty ,Breast Neoplasms ,Neutropenia ,Gastroenterology ,hepatic arterial infusion ,Metastasis ,Hepatic arterial infusion ,Breast cancer ,Hepatic Artery ,Floxuridine ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Biomarkers, Tumor ,Humans ,systemic chemotherapy ,breast carcinoma ,RC254-282 ,Survival analysis ,Infusion Pumps ,Aged ,Retrospective Studies ,business.industry ,Liver Neoplasms ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Disease Management ,toxicity ,Middle Aged ,medicine.disease ,Prognosis ,Gemcitabine ,Treatment Outcome ,Oncology ,Female ,Original Article ,business ,Breast carcinoma ,liver metastases ,medicine.drug - Abstract
Background: When liver metastasis in patients with breast cancer is diagnosed, treatment is generally palliative and usually consists of systemic therapies only. This study aimed to evaluate the efficacy and safety of hepatic arterial infusion (HAI) combined with systemic chemotherapy in patients with breast carcinoma liver metastases (BCLM). Methods: From January 2012 to December 2019, HAI catheter systems were implanted under the guide of digital subtract angiography (DSA) in 19 patients with BCLM. All patients received systemic chemotherapy and HAI gemcitabine plus floxuridine (FUDR). Methods: The overall response rate (ORR) of intrahepatic lesions was 73.7%, including 2 patients (10.5%) with complete remission (CR) and 12 patients (63.2%) with partial remission (PR). Additionally, we found that young patients (age
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- 2021
7. Decreased TMEM40 expression is associated with malignant behavior of cutaneous squamous cell carcinoma and inhibits tumor progression
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Dong-Lan Luo, Tang-De Zhang, Lin-lang Guo, Xian-wen Qiu, Jie Liu, Xiu-Fen Zheng, Wei-Liang Zhu, and Lei Yu
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Cancer Research ,Oncogene ,medicine.diagnostic_test ,Cell growth ,Cell ,apoptosis ,CSCC ,Articles ,Cell cycle ,Biology ,migration ,TMEM40 ,Flow cytometry ,medicine.anatomical_structure ,Oncology ,Cell culture ,Tumor progression ,medicine ,Cancer research ,Gene silencing ,biomarker - Abstract
Cutaneous squamous cell carcinoma (CSCC) is one of the most common types of skin cancer in humans worldwide. The identification and characterization of cancer-associated transmembrane proteins are important for understanding the molecular biology of CSCC. The aim of the present study was to evaluate the expression pattern of transmembrane protein 40 (TMEM40) in CSCC and its clinical significance. The underlying mechanisms were also examined. Reverse transcription-quantitative PCR, western blot and immunohistochemistry analysis were used to determine the relative expression of TMEM40 in CSCC cell lines and clinical tissue samples. The effect of TMEM40 gene silencing on cell proliferation was also evaluated using Cell Counting Kit-8 assays. Wound healing assays, flow cytometry and Transwell assays were used to explore the migration, cell cycle distribution/apoptosis and invasion of CSCC cells following TMEM40 silencing, respectively. In the present study, increased TMEM40 expression was observed in CSCC tissue samples, compared with normal skin, and TMEM40 expression was associated with large tumor size in patients with CSCC. In vitro functional assays indicated that TMEM40 was involved in the regulation of A431 and SCL1 cell growth through its effects on the cell cycle and apoptosis. Silencing TMEM40 in A431 and SCL1 cells resulted in cell cycle arrest at the G0/G1 phase and promoted apoptosis. In addition, migration and invasion were significantly inhibited following silencing of TMEM40 expression in CSCC cells. Taken together, the results of the present study indicated that reduced TMEM40 expression could inhibit CSCC development and that TMEM40 may represent a therapeutic target in CSCC.
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- 2021
8. Fluorescent Imaging of β-Amyloid Using BODIPY Based Near-Infrared Off–On Fluorescent Probe
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Cheng Peng, Wei-Liang Zhu, Peng Chengyuan, Ruimin Huang, Youhong Hu, Jing-Jing Zhang, Jingjing Chen, Hai-Yan Zhang, Ren Wenming, and Huaijiang Xiang
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Boron Compounds ,Male ,Fluorophore ,Biomedical Engineering ,Pharmaceutical Science ,Mice, Transgenic ,Plaque, Amyloid ,Bioengineering ,010402 general chemistry ,Fluorescent imaging ,01 natural sciences ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Alzheimer Disease ,In vivo ,β amyloid ,Animals ,Fluorescent Dyes ,Pharmacology ,Amyloid beta-Peptides ,Chemistry ,Organic Chemistry ,Near-infrared spectroscopy ,Brain ,Fluorescence ,In vitro ,0104 chemical sciences ,Disease Models, Animal ,Spectrometry, Fluorescence ,Biophysics ,BODIPY ,030217 neurology & neurosurgery ,Biotechnology - Abstract
Fluorescent imaging of β-amyloid (Aβ) is one of the most promising methods for Alzheimer's disease diagnosis. Several fluorescent probes have been reported to detect Aβ both in vitro and in vivo. However, highly sensitive and highly selective probes with low background signals are still greatly needed. Herein, we rationally designed and synthesized a PIET quenched near-infrared probe QAD-1 to detect Aβ. This probe contains BODIPY as fluorophore and tetrahydroquinoxaline as the quenching group. QAD-1 exhibited significant fluorescent switch-on after binding to soluble and insoluble Aβ species, and the probe had the benefit of low background signal to stain Aβ plaques without the need of wash-out procedures in vitro, which was specially found by the fluorescence off-on probe. QAD-1 could identify the overproduced Aβ in transgenic (APPSWE/PSEN 1dE9) AD mice as early as 6 months old in vivo, which indicated that QAD-1 may be a potential probe for monitoring Aβ species at an early stage of AD.
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- 2018
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9. Acetophenone derivatives from the root bark of Cynanchum wilfordii as potential neuroprotective agents
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Jing-Jing Zhang, Hao-Wen Jiang, Gui-Min Wang, Lei Cao, Hai-Yan Zhang, Jing Lin, Jin-Long Li, Wei-Liang Zhu, Yan Chen, Shan-Shan Gu, He Jiao, Wei-Min Zhao, and Ling Wang
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0301 basic medicine ,Circular dichroism ,Stereochemistry ,Plant Science ,Biochemistry ,Neuroprotection ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,chemistry ,Cynanchum wilfordii ,visual_art ,visual_art.visual_art_medium ,Bark ,Enantiomer ,Agronomy and Crop Science ,Inhibitory effect ,030217 neurology & neurosurgery ,Biotechnology ,Acetophenone - Abstract
Seven new acetophenone derivatives, three couples of enantiomers (±)-cynwilforones D − F (1 − 3) together with cynwilforone G (4), were isolated form the root bark of Cynanchum wilfordii (Maxim.) Hemsl. Their structures were deduced based on spectroscopic analysis and X-ray crystallography. Each racemate was separated into individual enantiomers, and electronic circular dichroism (ECD) calculations were used to assign their absolute configurations. All compounds exhibited inhibitory effect of Aβ oligomerization in different degrees. Among them, (+)-3 and (−)-3 showed neuroprotective effects on Aβ oligomers-treated SH-SY5Y cells.
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- 2018
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10. The relationship between binding models of TMA with furan and imidazole and the molecular electrostatic potentials: DFT and MP2 computational studies
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Tong Liu, Jiande Gu, Xiao-Jian Tan, Wei-Liang Zhu, Xiao-Min Luo, Hua-Liang Jiang, Ru-Yun Ji, Kai-Xian Chen, Silman, Israel, and Sussman, Joel L.
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Chemical affinity -- Analysis ,Binding energy -- Analysis ,Molecular computing -- Research ,Complex compounds -- Analysis ,Chemicals, plastics and rubber industries - Published
- 2002
11. How does ammonium interact with aromatic groups? A density functional theory (DFT/B3LYP) investigation
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Wei-Liang Zhu, Xiao-Jian Tan, Chum Mok Puah, Jian-De Gu, Hua-Liang Jiang, Kai-Xian Chen, Felder, Clifford E., Silman, Israel, and Sussman, Joel L.
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Density functionals -- Usage ,Aromatic compounds -- Chemical properties ,Aromatic compounds -- Structure ,Ammonium chloride -- Chemical properties ,Ammonium chloride -- Structure ,Ammonium paratungstate -- Chemical properties ,Ammonium paratungstate -- Structure ,Ammonium compounds -- Chemical properties ,Ammonium compounds -- Structure ,Chemicals, plastics and rubber industries - Abstract
DFT/B3LYP calculations are carried out on complexes formed by N(H)4(super + ) with aromatics to characterize the forces involved in such interactions and to gain further insight in to the nature and diversity of cation-aromatic interactions. The calculated results indicate that the protanated heterocyclic N(H)3 hydrogen-bond complexes produce the largest enthalpies.
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- 2000
12. Sarinfacetamides A and B, Nitrogenous Diterpenoids with Tricyclo[6.3.1.0
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Fei, Ye, Jing, Li, Yu, Wu, Zheng-Dan, Zhu, Ernesto, Mollo, Margherita, Gavagnin, Yu-Cheng, Gu, Wei-Liang, Zhu, Xu-Wen, Li, and Yue-Wei, Guo
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China ,Molecular Structure ,Nitrogen ,Alkanes ,Animals ,Diterpenes ,Anthozoa - Abstract
Two novel nitrogenous diterpenoids, sarinfacetamides A (1) and B (2), featuring an uncommon tricyclo[6.3.1.0
- Published
- 2018
13. A Potential Antibody–Drug Conjugate Targeting Human LIV1 for the Treatment of Triple-Negative Breast Cancer
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Wei Zhang, Hong Liu, Wei-Liang Zhuang, Yuan Li, Li-Ping Xie, and You-Jia Hu
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triple-negative breast cancer ,LIV1 ,anti-LIV1 antibody ,antibody–drug conjugates ,Pharmacy and materia medica ,RS1-441 - Abstract
Triple-negative breast cancer (TNBC), which accounts for 15 to 20% of incidents of breast cancer, is the only breast cancer subtype that lacks targeted treatments. It was reported in the literature that LIV1 was highly expressed in TNBC and other solid tumors. This makes LIV1 a potential target for the treatment of TNBC. This study aimed to develop an anti-LIV1 antibody for the treatment of TNBC. In this study, a novel anti-LIV1 antibody Ab1120 was developed and conjugated with monomethyl auristatin E (MMAE) to obtain the antibody–drug conjugate, Ab1120-vcMMAE. The Cell Counting Kit-8 method was used to assess the killing effect of the antibody–drug conjugate on cell lines MDA-MB−231 (high LIV1 expression of breast cancer cell line), MDA-MB-468 (low LIV1 expression of breast cell line), and 293C18 (LIV1-negative human embryonic kidney cell). The antitumor effect of Ab1120-vcMMAE on an MDA-MB-231 xenograft model was determined by evaluating the tumor volume and body weight after its treatment. In vitro analysis showed that Ab1120-vcMMAE is a potent inhibitor against the proliferation of a LIV1 overexpression cell line. The in vivo results demonstrated its antitumor activity in the cell-derived xenograft breast tumor mouse model. The results of this study suggest that Ab1120-vcMMAE may be used as a new therapeutic drug for patients with LIV1 high-expression breast cancer.
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- 2023
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14. (M)- and (P)-Bicelaphanol A, Dimeric Trinorditerpenes with Promising Neuroprotective Activity from Celastrus orbiculatus
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Zhuo Yang, Wei-Min Zhao, Hong-Min Wang, Luo-Yi Wang, Jian Wu, Hai-Yan Zhang, Shuangzhu Liu, Xu Jie Wang, Yan Fu, and Wei-Liang Zhu
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Stereochemistry ,Molecular Conformation ,Pharmaceutical Science ,Crystallography, X-Ray ,PC12 Cells ,Plant Roots ,Neuroprotection ,Analytical Chemistry ,Celastrus orbiculatus ,chemistry.chemical_compound ,Drug Discovery ,Animals ,Viability assay ,Nuclear Magnetic Resonance, Biomolecular ,Pharmacology ,Atropisomer ,Molecular Structure ,biology ,Chemistry ,Organic Chemistry ,Celastraceae ,biology.organism_classification ,In vitro ,Acetylcysteine ,Rats ,Neuroprotective Agents ,Monomer ,Complementary and alternative medicine ,visual_art ,Plant Bark ,visual_art.visual_art_medium ,Molecular Medicine ,Bark ,Diterpenes ,Drugs, Chinese Herbal - Abstract
(M)-Bicelaphanol A (1) and (P)-bicelaphanol A (2), two unprecedented dimeric trinorditerpenes existing as atropisomers, together with their monomer celaphanol A (3), were isolated from the root bark of Celastrus orbiculatus. The structures and absolute configurations of 1 and 2 were determined by spectroscopic and single-crystal X-ray diffraction analyses. Compound 1 exhibited a significant in vitro neuroprotective effect against a hydrogen peroxide-induced cell viability decrease in PC12 cells at 1 μM, while compounds 2 and 3 showed such effects at 10 μM.
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- 2013
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15. Docking-based structural splicing and reassembly strategy to develop novel deazapurine derivatives as potent B-Raf
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Gui-Min, Wang, Xiang, Wang, Jian-Ming, Zhu, Bin-Bin, Guo, Zhuo, Yang, Zhi-Jian, Xu, Bo, Li, He-Yao, Wang, Ling-Hua, Meng, Wei-Liang, Zhu, and Jian, Ding
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Proto-Oncogene Proteins B-raf ,Sulfonamides ,Indoles ,Dose-Response Relationship, Drug ,Molecular Structure ,Cell Survival ,Imidazoles ,Antineoplastic Agents ,Molecular Docking Simulation ,Structure-Activity Relationship ,Solubility ,Vemurafenib ,Purines ,Cell Line, Tumor ,Oximes ,Humans ,Original Article ,Drug Screening Assays, Antitumor ,Protein Kinase Inhibitors ,Cell Proliferation - Abstract
The mutation of B-RafV600E is widespread in a variety of human cancers. Its inhibitors vemurafenib and dabrafenib have been launched as drugs for treating unresectable melanoma, demonstrating that B-RafV600E is an ideal drug target. This study focused on developing novel B-RafV600E inhibitors as drug leads against various cancers with B-RafV600E mutation. Using molecular modeling approaches, 200 blockbuster drugs were spliced to generate 283 fragments followed by molecular docking to identify potent fragments. Molecular structures of potential inhibitors of B-RafV600E were then obtained by fragment reassembly followed by docking to predict the bioactivity of the reassembled molecules. The structures with high predicted bioactivity were synthesized, followed by in vitro study to identify potent B-RafV600E inhibitors. A highly potent fragment binding to the hinge area of B-RafV600E was identified via a docking-based structural splicing approach. Using the fragment, 14 novel structures were designed by structural reassembly, two of which were predicted to be as strong as marketed B-RafV600E inhibitors. Biological evaluation revealed that compound 1m is a potent B-RafV600E inhibitor with an IC50 value of 0.05 μmol/L, which was lower than that of vemurafenib (0.13 μmol/L). Moreover, the selectivity of 1m against B-RafWT was enhanced compared with vemurafenib. In addition, 1m exhibits desirable solubility, bioavailability and metabolic stability in in vitro assays. Thus, a highly potent and selective B-RafV600E inhibitor was designed via a docking-based structural splicing and reassembly strategy and was validated by medicinal synthesis and biological evaluation.
- Published
- 2016
16. [Acupuncture at Yaoyangguan (GV 3) for 13 cases of upper limb pain caused by cervical spondylosis radiculopathy]
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Wei-liang, Zhu and Guang-zhong, Du
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Adult ,Male ,Upper Extremity ,Acupuncture Therapy ,Humans ,Female ,Spondylosis ,Middle Aged ,Radiculopathy ,Acupuncture Points - Published
- 2015
17. Two new sulfated sesquiterpenoids from Petasites tricholobus
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Yong, Zhang, Yuan-Yuan, Gao, Qi, Jia, Fu-Jiang, Guo, Bo, Li, Zhi-Jian, Xu, Yi-Ming, Li, Wei-Liang, Zhu, and Kai-Xian, Chen
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Cell Line, Tumor ,Humans ,Glycosides ,Petasites ,Norisoprenoids ,Sesquiterpenes - Abstract
Two new sulfated sesquiterpenoids, megastigman-7-ene-3, 5, 6, 9-tetrol-3-O-β-D-6'-sulfonated-glucopyranoside (1) and 3-O-β-D-6'-sulfonated-glucopyranosyl-6-(3-oxo-2-butenylidenyl)-1, 1, 5-trimethylcyclohexan-5-ol (2), along with one known sesquitepenoid compound icariside B1 (3) were isolated from the whole herb of Petasites tricholobus Franch. Their structures were identified by their chemical and spectroscopic characters. All obtained compounds were tested for their cytotoxicity against four cancer cell lines.
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- 2015
18. Theoretical insight into the interactions of TMA-benzene and TMA-pyrrole with B3LYP density-functional theory (DFT) and ab initio second order Moller-Plesset perturbation theory (MP2) calculations
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Tong Liu, Jiande Gu, Xiao-Jian Tan, Xiao-Min Luo, Ru-Yun Ji, Silman, Israel, Wei-Liang Zhu, Hua-Liang Jiang, Kai-Xian Chen, and Sussman, Joel L.
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Density functionals -- Analysis ,Benzene -- Chemical properties ,Chemicals, plastics and rubber industries - Abstract
The interaction properties if tetramethylammonium(TMA) with aromatic compounds such as benzene and pyrrole are theoretically analysed, based on B3LYP density-functional theory (DFT) and ab initio second order Moller-Plesset perturbation theory (MP2) calculations. The TMA-aromatic interactions are mainly due to typical cation-pi interaction and the dispersion interaction.
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- 2001
19. Quantum/classical mechanical comparison of cation-pi interactions between tetramethylammonium and benzene
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Felder, Clifford, Hua-Liang Jiang, Wei-Liang Zhu, Kai-Xian Chen, Silman, Israel, Botti, Simone A., and Sussman, Joel L.
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Benzene -- Chemical properties ,Methylene blue -- Chemical properties ,Density functionals -- Research ,Chemicals, plastics and rubber industries - Abstract
The density functional theory (DFT) and MP2 methods are employed at the 6-31G and 6-311G basis set levels to investigate the interaction between tetramethylammonium and benzene, and to deduce binding geometries and ESP CHELPG atomic charges in order to modify the atomic charge parameters of existing molecular mechanics force fields. The suitable modification of the atomic charges based on calculated CHELPG charges, enable it to represent cation-pi interactions without reprogramming.
- Published
- 2001
20. Quantum chemistry investigation on the dihydrogen bond between silicane and ammonium
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Wei-Liang Zhu, Chum Mok Puah, Xiao-Jian Tan, Hua-Liang Jiang, and Kai-Xian Chen
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Chemical reactions -- Research ,Ammonium chloride -- Chemical properties ,Ammonium paratungstate -- Chemical properties ,Ammonium compounds -- Chemical properties ,Quantum chemistry -- Research ,Chemicals, plastics and rubber industries - Abstract
The quantum chemical calculations were performed on the complexes formed by silicane and ammonium in order to investigate the binding characteristics and nature of the dihydrogen bond. The calculation results reveal that the dihydrogen-bond angle is ~180.0degrees and that the bond length is ~1.60A.
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- 2001
21. Inhibitory Effects of (2'R)-2',3'-dihydro-2'-(1-hydroxy-1-methylethyl)-2,6'-bibenzofuran-6,4'-diol on Mushroom Tyrosinase and Melanogenesis in B16-F10 Melanoma Cells
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Jing-Jie, Zhu, Gui-Rui, Yan, Zhi-Jian, Xu, Xiao, Hu, Gai-Hong, Wang, Ting, Wang, Wei-Liang, Zhu, Ai-Jun, Hou, and He-Yao, Wang
- Subjects
Melanins ,Molecular Docking Simulation ,Mice ,Monophenol Monooxygenase ,Cell Line, Tumor ,Cyclic AMP ,Melanoma, Experimental ,Animals ,Morus ,Enzyme Inhibitors ,Agaricales ,Benzofurans - Abstract
(2'R)-2',3'-Dihydro-2'-(1-hydroxy-1-methylethyl)-2,6'-bibenzofuran-6,4'-diol (DHMB) is a natural compound extracted from Morus notabilis. It was found that DHMB acts as a competitive inhibitor against mushroom tyrosinase with a Ki value of 14.77 μM. Docking results further indicated that it could form strong interactions with one copper ion with a distance of 2.7 Å, suggesting the mechanism of inhibition might be due to chelating copper ions in the active site. Furthermore, melanin production in B16-F10 murine melanoma cells was significantly inhibited by DHMB in a concentration-dependent manner without cytotoxicity. The results of western blotting also showed that DHMB decreased 3-isobuty-1-methxlzanthine-induced mature tyrosinase expression. Taken together, these findings indicated that DHMB may be a new promising pigmentation-altering agent for agriculture, cosmetic, and therapeutic applications.
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- 2014
22. A quantum chemistry study of Qinghaosu
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Hua-Liang Jiang, Jian-Zhong Chen, Ru-Yun Ji, Jian-De Gu, Kai-Xian Chen, and Wei-Liang Zhu
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Bond length ,Chemistry ,Computational chemistry ,Ab initio ,General Physics and Astronomy ,Physical chemistry ,Physical and Theoretical Chemistry ,Ring (chemistry) ,Quantum chemistry ,Basis set - Abstract
The powerful anti-malarial drug, Qinghaosu (Artemisinin), has been studied using ab initio methods. The DFT B3LYP method with the 6-31G ∗ basis set gives an excellent geometry compared to experiments, especially for the OO bond length and the 1,2,4-Trioxane ring subsystem. The R (OO) bond length predicted at this level is 1.460 A, only 0.018 A shorter than the experimental measurement. The vibrational analysis shows that the OO stretching mode is combined with the OC vibration mode, having the character of an OOC entity. The OO vibrational band at 722 cm −1 suggested in the experimental studies has been assigned as 1,2,4-trioxane ring breathing.
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- 1997
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23. [Phenolic constituents from Lysimachia patungensis]
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Peng, Zeng, Yong, Zhang, Chen, Pan, Qi, Jia, Fu-Jiang, Guo, Wei-Liang, Zhu, Yi-Ming, Li, and Kai-Xian, Chen
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Chalcones ,Plants, Medicinal ,Molecular Structure ,Phenols ,Cinnamates ,Rutin ,Quercetin ,Primulaceae - Abstract
To study the chemical constituents of Lysimachia patungensis Hand.-Mazz., silica gel column chromatography, reverse phase ODS column chromatography, MCI and Sephadex LH-20, were used to separate the 95% EtOH extract of the whole plant of Lysimachia patungensis Hand.-Mazz.. The structures of the isolated compounds have been established on the basis of chemical and NMR spectroscopic evidence as well as ESI-MS in some cases. Twelve phenolic compounds were obtained and identified as quercetin-3, 3'-di- O-alpha-L-rhamnoside (1), myricetrin (2), quercitrin (3), rutin (4), 2-hydroxynaringenin-4'-O-glucopyranoside (5), naringenin 7-O-glucopyranoside (6), liquiritin apioside (7), licochalcone B (8), tetrahydroxymethoxy chalcone (9), methyl-p-coumarate (10), 2, 4, 6-trihydroxy acetophenone-2-O-glucopyranoside (11) and vaccihein A (12). Among them, compound 1 is a new compound, and compounds 5, 11 and 12 are isolated from the genus Lysimachia L. for the first time, and the others are isolated from the plant for the first time.
- Published
- 2013
24. [Progress of anti-tumor study based on BRAF]
- Author
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Gui-Rui, Yan, Zhi-Jian, Xu, He-Yao, Wang, and Wei-Liang, Zhu
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Mitogen-Activated Protein Kinase Kinases ,Proto-Oncogene Proteins B-raf ,Sulfonamides ,Indoles ,Imidazoles ,Antineoplastic Agents ,Drug Delivery Systems ,Vemurafenib ,Drug Resistance, Neoplasm ,Mutation ,Oximes ,Animals ,Humans ,Thyroid Neoplasms ,Colorectal Neoplasms ,Melanoma - Abstract
BRAF is one of the most important pro-oncogenes, which is mutated in approximately 8% of human tumors. The most common BRAF mutation is a valine-to-glutamate transition (V600E) that is expressed primarily in melanoma, colorectal cancer and thyroid carcinoma. MEK/ERK is constitutively activated in the cells expressing BRAFV600E, leading to tumor development, invasion, and metastasis. Therefore, BRAFV600E is a therapeutic target for melanoma and some other BRAFV600E tumors. Vemurafenib, a BRAFV600E inhibitor, which was approved by FDA for the treatment of late-stage melanoma in 2011, produces improved rates of overall and progression-free survival in patients with the BRAFV600E mutation, making a dramatic breakthrough in melanoma treatment. Vemurafenib is also an individual target drug based on genetic diagnosis. However, its therapeutic success is limited by the emergence of drug resistance. Therefore, it is important to explore the mechanisms underlying the resistance for developing new inhibitor drugs and for preventing or delaying the resistance evolution to BRAF inhibitor drugs. In this review, we described the role of BRAFV600E as an anti-tumor drug target and the development of BRAF inhibitors. We also discussed the mechanisms leading to resistance of BRAFV600E inhibitors. Furthermore, therapeutic strategies that might be employed to overcome acquired resistance were proposed.
- Published
- 2013
25. Sarinfacetamides A and B, Nitrogenous Diterpenoids with Tricyclo[6.3.1.01,5]dodecane Scaffold from the South China Sea Soft Coral Sarcophyton infundibuliforme.
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Fei Ye, Jing Li, Yu Wu, Zheng-Dan Zhu, Mollo, Ernesto, Gavagnin, Margherita, Yu-Cheng Gu, Wei-Liang Zhu, Xu-Wen Li, and Yue-Wei Guo
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- 2018
- Full Text
- View/download PDF
26. [Advances in the structure-activity relationship study of natural flavonoids and its derivatives]
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Jian-Qing, Zhong, Bo, Li, Qi, Jia, Yi-Ming, Li, Wei-Liang, Zhu, and Kai-Xian, Chen
- Subjects
Flavonoids ,Structure-Activity Relationship ,Plants, Medicinal ,Fibrinolytic Agents ,Vasodilator Agents ,Anti-Inflammatory Agents ,Animals ,Humans ,Antineoplastic Agents ,Antisepsis ,Antiviral Agents ,Antioxidants ,Anti-Bacterial Agents - Abstract
Flavonoids are a large class of compounds widely distributed in nature. Many pharmacological activities of flavonoids have been reported such as anti-cancer, antioxidant, anti-inflammatory, hepatoprotective, antithrombotic, vasodilator, antiviral, antibacterial, antiallergic, and so on. In recent years, domestic and foreign research groups choose natural flavonoids and optimize their chemical structures in order to develop a number of new derivatives with stronger pharmacological activities. As part of the mechanisms are not clear, we need to strengthen in-depth research in the SAR (structure-activity relationship) study for targeted and efficient structure optimization. This paper systematically summarize current researches in the SAR studies of flavonoids and their derivatives, which can serve as a reference for synthesizing new flavonoid derivatives.
- Published
- 2011
27. [Endostatin in different administration routes combined with adriamycin chemotherapy in the treatment of liver cancer xenograft in mice]
- Author
-
Ze-xin, Wang, Sen-ming, Wang, Qi, Zhou, Xi-gang, Hu, Wei-liang, Zhu, Hui, Meng, and Ji-ren, Zhang
- Subjects
Male ,Vascular Endothelial Growth Factor A ,Mice ,Doxorubicin ,Liver Neoplasms ,Animals ,Administration, Intravenous ,Drug Therapy, Combination ,Female ,Mice, Inbred Strains ,Injections, Intralesional ,Xenograft Model Antitumor Assays ,Endostatins - Abstract
To study the antiangiogenetic and tumor inhibitory effects of endostatin (Es) by intratumoral versus intravenous administration combined with adriamycin (Adm) for treatment of transplanted tumor in mice.Forty mice were subjected to subcutaneous implantation of H22 cells and randomly divided into 4 groups by the body weight when the tumor diameter reached 1 cm, namely the control group (with intratumoral and intravenous injection of normal saline), Es intratumoral group (with intratumoral injection Es and intraperitoneal Adm injection), Es vein group (with intravenous Es injection and intraperitoneal Adm injection), and Adm group (with intratumoral saline injection and intraperitoneal Adm injection). The tumor volumes and tumor inhibition rates were calculated, and the expression of vascular endothelial growth factor (VEGF) and the microvessel density (MVD) of the tumors were examined, with the survival time of the mice also observed.The tumor volume was smaller in Es intratumoral group than in the other groups (P0.05). The expression of VEGF and M VD in Es intratumoral group was significantly decreased as compared with that in the other groups (P0.05). The survival time was significantly longer in Es intratumoral group and Es vein group than in the other groups (P0.05), but showed no significant difference between Es intratumoral group and Es vein group (P0.05).In combination with Adm regimen, Es given intratumoral injection produces better effect than intravenous Es injection against angiogenesis and tumor growth, no significant difference can be found in the survival time between them.
- Published
- 2010
28. [Therapeutic effect of para-toluenesulfonamide on transplanted hepatocarcinoma in nude mice]
- Author
-
Hui, Meng, Min-ying, Li, Wei-liang, Zhu, and Ji-ren, Zhang
- Subjects
Male ,Mice, Inbred BALB C ,Sulfonamides ,Radiotherapy ,Mice, Nude ,Injections, Intralesional ,Combined Modality Therapy ,Mice ,Random Allocation ,Liver Neoplasms, Experimental ,Antineoplastic Combined Chemotherapy Protocols ,Animals ,Female ,Neoplasm Transplantation ,Toluene - Abstract
To study the effect of of percutaneous para-toluenesulfonamide (PTS) injection on transplanted hepatocarcinoma in nude mice.Sixty nude mice with subcutaneous transplanted hepatocarcinoma were randomized into 6 groups, namely PTS, chemotherapy, radiotherapy, PTS+chemotherapy, PTS+radiotherapy and control groups. PTS were injected into the tumor in the nude mouse models as indicated, and the tumor growth rate and survival time of the mice were recorded.All the treatments resulted in effective arrest of the tumor growth, but the effects of PTS+chemotherapy and PTS+radiotherapy were more obvious. No significant difference in the survival time of the mice were noted between the groups.PTS+chemotherapy and PTS+radiotherapy are safe and reliable, and produces better effects than either radiotherapy or chemotherapy alone.
- Published
- 2009
29. [Advances in the study of berberine and its derivatives]
- Author
-
Bo, Li, Wei-Liang, Zhu, and Kai-Xian, Chen
- Subjects
Structure-Activity Relationship ,Berberine ,Alzheimer Disease ,Cardiovascular Diseases ,Cell Line, Tumor ,Diabetes Mellitus ,Animals ,Humans ,Hypoglycemic Agents ,Apoptosis ,Anti-Arrhythmia Agents ,Antineoplastic Agents, Phytogenic - Abstract
Berberine is a isoquinoline alkaloid extracted from Chinese herbs such as Coptidis rhizome. In the past decade, there are more than 2 000 published papers studying the clinical application, pharmacodynamic mechanism and structure-activity relationship (SAR) of berberine and its derivatives, for treating tumor, diabetes, cardiavascellum disease, hyperlipemia, inflammation, bacterium and virus infection, cerebral ischemia trauma, mental disease, Alzheimer disease, osteoporosis, and so on. These results demonstrate that berberine has wide physiologic function and has great potential for structural modification as new drug lead. However, there is no systematic review about the study of berberine and its derivatives up to now. This paper is a systematic review of the research advances of berberine and its derevatives in clinical application, pharmacodynamic mechanisms, molecular pharmacology, absorption and metabolism, and SAR studies. The current review would provide some useful information for further study on structural modification of berberine for discovering new drug leads based on its pharmacodynamic mechanisms.
- Published
- 2008
30. [Association of single nucleotide polymorphism at interleukin-10 gene 1082 nt with the risk of gastric cancer in Chinese population]
- Author
-
Shao-zhang, Zhou, Wei-liang, Zhu, Ming-ying, Li, Hong-yi, Li, and Ji-ren, Zhang
- Subjects
Male ,China ,Genotype ,Middle Aged ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Interleukin-10 ,Gene Frequency ,Risk Factors ,Stomach Neoplasms ,Humans ,Female ,Polymorphism, Restriction Fragment Length ,Aged - Abstract
To study the association of single nucleotide polymorphism at interleukin-10 gene 1082 locus with Helicobacter pylori (Hp) infection and the risk of gastric cancer in high prevalent region (Shaanxi Province)aand low prevalence region (Guangdong Province) in China.The genomic DNA was extracted from the peripheral blood of 104 healthy individuals, 104 gastric cancer patients from Guangdong Province, and from 102 healthy volunteers and 102 gastric cancer patients in Shaanxi Province, China. The single nucleotide polymorphism at IL-10 gene 1082 locus was analyzed by polymerase chain reaction and restriction fragment length polymorphism (PCR-RFLP). The serum levels of anit-Hp IgG was measured by enzyme-linked immunosorbent assay.The frequencies of IL-10-1082 A/A, A/G and G/G genotypes in the 412 subjects were 86.7%, 10.7% and 2.4%, respectively. In the low prevalence region, the number of carriers of IL-10-1082 G* was much greater in the cancer patients than in the healthy controls (14.4% vs 7.7%, Chi2=4.02, P0.05, OR=1.01, 95% CI=1.08-3.10). The presence of IL-10-1082 G* was associated with significantly increased risk of gastric cancer following Hp infection (Chi(2)=5.36, P0.05, OR=6.0, 95% CI=1.23-17.52). In the high prevalence region, the frequency of IL-10-1082 G* was slightly higher among the cancer patients than in the healthy controls, but this difference was not statistically significant (12.7% vs 16.6%, P0.05).The G* genotype of IL-10 gene 1082 locus may be associated with increased risk of gastric cancer in China.
- Published
- 2008
31. [Dose-effect relationship of para-toluenesulfonamide for treatment of hepatocellular carcinoma in rats]
- Author
-
Min-ying, Li, Hui, Meng, Wei-liang, Zhu, Shao-zhang, Zhou, Hong-yi, Li, and Ji-ren, Zhang
- Subjects
Rats, Sprague-Dawley ,Necrosis ,Sulfonamides ,Carcinoma, Hepatocellular ,Dose-Response Relationship, Drug ,Animals ,Antineoplastic Agents ,Cell Proliferation ,Rats ,Toluene - Abstract
To investigate the dose-effect relationship of para-toluenesulfonamide (PTS) for treatment of hepatocellular carcinoma in rats.Forty-two SD rats bearing subcutaneous transplanted hepatocellular carcinoma were randomly divided into 6 groups (n=7), in which 0.02, 0.04, 0.06, 0.08, and 0.10 ml PTS and 0.10 ml normal saline were injected into the tumor, respectively. All of the rats were executed 24 h after the injection to observe the pathological changes in the tumor.In rats with saline injection, the tumor tissues exhibited no obvious changes and the tumor cells retained the active proliferation. PTS, in contrast, caused coagulation necrosis of the tumor tissue, and the necrotic area expanded with the increase of the injected doses. The necrotic volume of the tumor was in roughly linear correlation with the dose of PTS injected, with the linear regression equation of V (cm(3))=-0.018+2.595Y (where V represents tumor necrosis volume, and Y the injected dose of PTS).The dose-effect relationship of PTS is roughly linear, and the PTS dose for injection can be estimated according to the diameter of the tumor.
- Published
- 2008
32. Bromomyrothenone B and botrytinone, cyclopentenone derivatives from a marine isolate of the fungus botrytis
- Author
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Hong Dae Choi, Dahai Zhang, Wei-Liang Zhu, Xifeng Li, Uk Lee, Jee H. Jung, Xianguo Li, Jiagao Cheng, and Byeng Wha Son
- Subjects
Cyclopentenone ,food.ingredient ,Stereochemistry ,Molecular Conformation ,Pharmaceutical Science ,Marine Biology ,Fungus ,Cyclopentanes ,Bromomyrothenone B ,Crystallography, X-Ray ,Analytical Chemistry ,chemistry.chemical_compound ,food ,Drug Discovery ,Organic chemistry ,Botrytinone ,Botrytis ,Pharmacology ,Korea ,biology ,Molecular Structure ,Circular Dichroism ,Organic Chemistry ,Absolute configuration ,Fungi imperfecti ,biology.organism_classification ,Complementary and alternative medicine ,chemistry ,Molecular Medicine ,Chirality (chemistry) - Abstract
New cyclopentenones, bromomyrothenone B (1) and botrytinone (2), and the known cyclonerodiol (3) were isolated from the marine algicolous fungus of the genus Botrytis. The absolute stereostructures of compounds 1 and 2 were elucidated on the basis of chemical and physicochemical evidence including quantum chemistry calculation, X-ray analysis, and CD exciton chirality method.
- Published
- 2007
33. Xishacorenes A-C, Diterpenes with Bicyclo[3.3.1]nonane Nucleus from the Xisha Soft Coral Sinularia polydactyla.
- Author
-
Fei Ye, Zheng-Dan Zhu, Jun-Sheng Chen, Jing Li, Yu-Cheng Gu, Wei-Liang Zhu, Xu-Wen Li, and Yue-Wei Guo
- Published
- 2017
- Full Text
- View/download PDF
34. [Comparative study of three local ablation methods for transplanted hepatocellular carcinoma in mice]
- Author
-
Wei-liang, Zhu, Jian, Zhang, Ji-ren, Zhang, Sen-ming, Wang, and Hai-ji, Bu
- Subjects
Male ,Mice ,Liver Neoplasms, Experimental ,Ethanol ,Animals ,Administration, Cutaneous ,Cryosurgery ,Neoplasm Transplantation ,Acetic Acid ,Injections - Abstract
To observe the effects of three commonly used local ablation methods in the treatment of transplanted hepatocellular carcinoma in mice to provide experimental evidence for treating hepatocellular carcinoma that defies surgical removal.Mouse models of hepatocellular carcinoma were established by means of subcutaneous transplantation, and treatment results of the three ablation methods, namely percutaneous ethanol injection therapy (PEIT), percutaneous acetic acid injection therapy (PAIT) and percutaneous local cryosurgery therapy (PLCT), were compared.The tumor inhibition rates of PLCT, PAIT and PEIT were 99.2%, 85.3%, and 72.8%, respectively. The rates for complete necrosis of the tumors were 100% (5/5), 60% (3/5), and 40% (2/5), with the survival time of 88.11+/-5.67, 86.67+/-7.26, and 72.89+/-12.86 days respectively.All of the three local ablation methods can inhibit the tumor growth to various degrees and prolong the survival time of the tumor-bearing mice. PLCT may yield relatively better result than the other two methods.
- Published
- 2003
35. Correlation analysis between meteorological factors, biomass, and active components of Salvia miltiorrhiza in different climatic zones.
- Author
-
ZHANG Chen-lu, LIANG Zong-suo, GUO Hong-bo, LIU Jing-ling, LIU Yan, LIU Feng-hua, and WEI Liang-zhu
- Published
- 2015
- Full Text
- View/download PDF
36. Effect of percutaneous para-toluenesulfonamide injection in treatment of hepatocarcinoma in rats
- Author
-
Shao-zhang Zhou, Hong-yi Li, Ji-ren Zhang, Hui Meng, Wei-liang Zhu, and Min-Ying Li
- Subjects
medicine.medical_specialty ,Percutaneous ,Chemistry ,Urology ,medicine ,Para-toluenesulfonamide - Published
- 2008
- Full Text
- View/download PDF
37. Microecological mechanisms of red-leaf disease occurrence in Salvia miltiorrhiza Bge.
- Author
-
DUAN Jia-li, SHU Zhi-ming, WEI Liang-zhu, FU Liang-liang, and XUE Quan-hong
- Abstract
A comparative study was made on the nutrient content in rhizosphere soil and the micro- flora in rhizosphere soil and on rhizoplane of healthy and red-leaf diseased Salvia miltiorrhiza plants, aimed to approach the microecological mechanisms of red-leaf disease occurrence in S. milt- iorrhiza. The N, P, K, and Mn contents in the diseased plant leaves were significantly lower than those in the healthy plant leaves (P<0. 05). No significant difference was observed in the available P content in the rhizosphere soils of diseased and healthy S. miltiorrhiza, but the available N and K contents were significantly higher (P <0. 05) in the rhizosphere soil of diseased S. miltiorrhiza. These results indicated that the red-leaf disease occurrence in S. miltiorrhiza was related to plant P deficiency, but the lack of P in the plants was not caused by the insufficient soil P supply. As com- pared with those in healthy S. miltiorrhiza rhizosphere, the bacterial number in diseased S. miltior- rhiza rhizosphere soil decreased by 41. 3%, while the fungal and actinomycetes numbers increased by 156. 6% and 189. 5% (P<0. 05), respectively. Similar variations in the numbers of bacteria, fungi, and actinomycetes were observed on diseased S. miltiorrhiza rhizoplane. In the rhizosphere soil and on the rhizoplane of diseased S. miltiorrhiza, the predominant microbial species that might be harmful included six fungi (Fusarium solani, Myrothecium roridum, F. tricinctum, Aspergillus calidoustus, F. oxysporum, and Dothideomycetes sp. ), four actinomycetes (Streptomyces lateritius, Lentzea waywayandensis, S. stelliscabiei and S. collinus), and two bacteria (Bacillus aryabhattai and Piscinibacter aquaticus). These predominant soil microbes likely caused plant P deficiency via negatively affecting the growth of roots and their absorption of soil nutrients. It was suggested that the red-leaf disease occurrence in S. miltiorrhiza was closely related to the plant P deficiency caused by the abnormality of soil microflora in the rhizosphere soil and on the rhizoplane of S. milt- orrhiza. [ABSTRACT FROM AUTHOR]
- Published
- 2013
38. An Efficient One-Pot Synthesis of Substituted 2-Aminothiophenes via Three-Component Gewald Reaction Catalyzed by L-Proline.
- Author
-
Tao Wang, Xian-Gui Huang, Jia Liu, Bo Li, Jin-Jin Wu, Kai-Xian Chen, Wei-Liang Zhu, Xiao-Yong Xu, and Bu-Bing Zeng
- Subjects
AGRICULTURAL chemicals ,DYES & dyeing ,ANTI-infective agents ,ANTICONVULSANTS ,ANTI-inflammatory agents ,KINASE inhibitors ,ADENOSINES - Abstract
An efficient one-pot procedure for the direct catalytic synthesis of substituted 2-aminothiophenes catalyzed by L-proline under mild reaction conditions has been developed. A variety of functionalized 2-aminothiophene scaffolds were assembled in high yields by this catalytic protocol. Low catalyst loading, simple procedure, and high yields are the important attributes of this methodology. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
39. Pharmacophore-based virtual screening versus docking-based virtual screening: a benchmark comparison against eight targets.
- Author
-
Zhi CHEN, Hong-lin LI, Qi-jun ZHANG, Xiao-guang BAO, Kun-qian YU, Xiao-min LUO, Wei-liang ZHU, and Hua-liang JIANG
- Subjects
PROTEINS ,LIGANDS (Biochemistry) ,ANGIOTENSIN converting enzyme ,ACETYLCHOLINESTERASE ,ANDROGENS ,THYMIDINE - Abstract
AbstractAim:This study was conducted to compare the efficiencies of two virtual screening approaches, pharmacophore-based virtual screening (PBVS) and docking-based virtual screening (DBVS) methods.Methods:All virtual screens were performed on two data sets of small molecules with both actives and decoys against eight structurally diverse protein targets, namely angiotensin converting enzyme (ACE), acetylcholinesterase (AChE), androgen receptor (AR), D-alanyl-D-alanine carboxypeptidase (DacA), dihydrofolate reductase (DHFR), estrogen receptors α (ERα), HIV-1 protease (HIV-pr), and thymidine kinase (TK). Each pharmacophore model was constructed based on several X-ray structures of protein-ligand complexes. Virtual screens were performed using four screening standards, the program Catalyst for PBVS and three docking programs (DOCK, GOLD and Glide) for DBVS.Results:Of the sixteen sets of virtual screens (one target versus two testing databases), the enrichment factors of fourteen cases using the PBVS method were higher than those using DBVS methods. The average hit rates over the eight targets at 2% and 5% of the highest ranks of the entire databases for PBVS are much higher than those for DBVS.Conclusion:The PBVS method outperformed DBVS methods in retrieving actives from the databases in our tested targets, and is a powerful method in drug discovery. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
40. COMPARISON OF THREE 3D-QSAR METHODS USING A NOVEL CLASS OF MURF INHIBITORS.
- Author
-
De-Xin Kong, Wei-Liang Zhu, Da-Lei Wu, Xu Shen, and Hua-Liang Jiang
- Subjects
- *
QSAR models , *STRUCTURE-activity relationships , *ANTIBACTERIAL agents , *CHEMICAL inhibitors , *CHEMICALS , *ANTIOXIDANTS - Abstract
MurF was considered as an attractive target for new antibacterial discovery. In this paper, three QSAR methods were employed, viz. comparative molecular field analysis (CoMFA), comparative molecular similarity indices analysis (CoMSIA) and hologram QSAR (HQSAR), to derive highly predictive QSAR models for designing novel MurF inhibitors and comparing different 3D-QSAR/alignment methods. QSAR models with high predictive ability for MurF inhibitors were successfully constructed in terms of cross-validation q2, standard error and predictive coefficient r2, which were around 0.70, 0.55 and 0.99, respectively. All the models from different methods were in good agreement with each other. Compounds with indeterminate activities were used as a test set; results showed that CoMSIA had the best predictive ability, followed by HQSAR and CoMFA. Based on these models, some key features for designing new MurF inhibitors were identified. A virtual database screen process was proposed based on the combination of these models. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
41. Density functional theory (DFT) study on the interaction of ammonium (NH<SUB>4</SUB><SUP>+</SUP>) and aromatic nitrogen heterocyclics
- Author
-
*, Wei-Liang Zhu, , Jiang, Hua-Liang, Puah, Chum Mok, Tan, Xiao-Jian, Chen, Kai-Xian, Cao, Yang, and Ji, Ru-Yun
- Abstract
A DFT calculation was performed at the B3LYP/6-31G* level on the complexes formed by NH4+ and aromatic nitrogen heterocyclics, viz. pyrrole, imidazole, pyridine and indole, in order to investigate the mechanism and complexity of the interaction between the ammonium group and the aromatic heterocyclic in biomacromolecules. The optimized geometries suggested that there are two different types of complexes: one is a cationπ complex and the other is a hydrogen bond complex. A cationπ complex will be formed if the heteroatom has no localized lone-pair electrons. A hydrogen bond complex will be formed by proton transfer from NH4+ to the heteroatom if the heteroatom has localized lone-pair electrons. In the case of the cationπ complex, the predicted geometries, atomic charges and thermodynamic parameters revealed that ammonium binds more strongly to heterocyclics than it binds to benzene. The calculated orbital coefficient and the optimized structures implied that NH4+ interacts with the π electrons of the C&z.dbd6;C bond of heterocyclics to form a cationπ complex mainly through one hydrogen atom. Regarding the hydrogen bond complex, although the calculated binding strength is similar to that for the cationπ complex, the ΔH of the whole reaction process suggested that the formation of the hydrogen bond complex is favorable to the stability of the whole system. Calculated IR spectra showed that three groups of new bands appear when NH4+ binds to heterocyclics. Normal mode analysis showed that these new bands are all related to the relative motion of the two parts in the formed complexes. All these results suggest that the NH4+heterocyclic system is a better model for studying the nature and complexity of the interaction between the ammonium group and the aromatic ring structure in biomolecules.
- Published
- 1999
42. Conformational transition pathway of calmodulin.
- Author
-
Kun Yang, Jian Zhang, Hua-liang Jiang, Wei-liang Zhu, and Xi-cheng Wang
- Subjects
CALMODULIN antagonists ,CONFORMATIONAL analysis ,MOLECULAR dynamics ,ALLOSTERIC regulation ,PHOSPHATASES - Abstract
The effects of antagonist on the conformational transition and global conformational transition pathway of calmodulin (CaM) are investigated by means of two different conformations of open and closed states. The molecular dynamics method is firstly used to simulate conformational transitions of the calmodulins with and without an antagonist bound. The results show that CaM without antagonist tends to open from its closed state and cause allosteric interaction. And CaM with antagonist tends to keep in closed state, which is conducive to control the activities of some kinases and phosphatases. A global conformational transition between open and closed states is simulated by using targeted molecular dynamics (TMD), and a conformational transition pathway and four possible intermediate states are obtained. [ABSTRACT FROM AUTHOR]
- Published
- 2009
43. [Microecological mechanisms of red-leaf disease occurrence in Salvia miltiorrhiza Bge].
- Author
-
Duan JL, Shu ZM, Wei LZ, Fu LL, and Xue QH
- Subjects
- Actinobacteria growth & development, China, Plant Leaves metabolism, Potassium analysis, Potassium metabolism, Rhizosphere, Salvia miltiorrhiza metabolism, Ecosystem, Fungi growth & development, Plant Diseases microbiology, Salvia miltiorrhiza microbiology, Soil Microbiology
- Abstract
A comparative study was made on the nutrient content in rhizosphere soil and the microflora in rhizosphere soil and on rhizoplane of healthy and red-leaf diseased Salvia miltiorrhiza plants, aimed to approach the microecological mechanisms of red-leaf disease occurrence in S. miltiorrhiza. The N, P, K, and Mn contents in the diseased plant leaves were significantly lower than those in the healthy plant leaves (P < 0.05). No significant difference was observed in the available P content in the rhizosphere soils of diseased and healthy S. miltiorrhiza, but the available N and K contents were significantly higher (P < 0.05) in the rhizosphere soil of diseased S. miltiorrhiza. These results indicated that the red-leaf disease occurrence in S. miltiorrhiza was related to plant P deficiency, but the lack of P in the plants was not caused by the insufficient soil P supply. As compared with those in healthy S. miltiorrhiza rhizosphere, the bacterial number in diseased S. miltiorrhiza rhizosphere soil decreased by 41.3% , while the fungal and actinomycetes numbers increased by 156.6% and 189.5% (P < 0.05), respectively. Similar variations in the numbers of bacteria, fungi, and actinomycetes were observed on diseased S. miltiorrhiza rhizoplane. In the rhizosphere soil and on the rhizoplane of diseased S. miltiorrhiza, the predominant microbial species that might be harmful included six fungi (Fusarium solani, Myrothecium roridum, F. tricinctum, Aspergillus calidoustus, F. oxysporum, and Dothideomycetes sp.), four actinomycetes (Streptomyces lateritius, Lentzea waywayandensis, S. stelliscabiei and S. collinus), and two bacteria (Bacillus aryabhattai and Piscinibacter aquaticus). These predominant soil microbes likely caused plant P deficiency via negatively affecting the growth of roots and their absorption of soil nutrients. It was suggested that the red-leaf disease occurrence in S. miltiorrhiza was closely related to the plant P deficiency caused by the abnormality of soil microflora in the rhizosphere soil and on the rhizoplane of S. miltiorrhiza.
- Published
- 2013
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