264 results on '"Weibo, Liang"'
Search Results
2. Gal-3 activates Tyro3 to ameliorate ferroptosis of hippocampal neurons after traumatic brain injury
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Xiao Zhang, Manrui Li, Yang Xu, Jingting Wu, Ruixuan Yuan, Yihan Sun, Xiaogang Chen, Meili Lv, Bo Jin, Xiameng Chen, and Weibo Liang
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MT: Bioinformatics ,traumatic brain injury ,hippocampal neuron ,ferroptosis ,Tyro3 ,Gal-3 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Traumatic brain injury (TBI) leads to significant hippocampal neuronal loss, contributing to cognitive dysfunction. Our bioinformatics analysis of single-cell RNA sequencing data from hippocampal tissue following TBI revealed persistent neuronal loss and activation of ferroptosis-related pathways. Notably, Tyro3 expression was significantly upregulated, suggesting its potential role in neuronal ferroptosis. This finding was further validated in both in vivo and in vitro studies using a controlled cortical impact (CCI) model. We observed that Tyro3 knockdown exacerbated ferroptosis, while Tyro3 overexpression mitigated it. Moreover, treatment with the Tyro3 agonist Gal-3 conferred protective effects, improving both motor and cognitive functions through Tyro3 activation. These results highlight Tyro3 as a promising therapeutic target for TBI.
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- 2025
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3. From Skulls to Faces: A Deep Generative Framework for Realistic 3D Craniofacial Reconstruction.
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Yehong Pan, Jian Wang, Guihong Liu, Qiushuo Wu, Yazi Zheng, Xin Lan, Weibo Liang, Jiancheng Lv 0001, and Yuan Li
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- 2024
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4. Development of a coding SNP panel for tracking the origin of whole-exome sequencing samples
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Yong Huang, Yuanyuan Xiao, Shengqiu Qu, Jiaming Xue, Lin Zhang, Li Wang, and Weibo Liang
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Coding single-nucleotide polymorphisms ,Whole-exome sequencing ,Sample tracking ,Personal identification ,Parentage test ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Whole-exome sequencing (WES) is widely used to diagnose complex genetic diseases and rare conditions. The implementation of a robust and effective quality control system for sample identification and tracking throughout the WES process is essential. We established a multiplex panel that included 22 coding single-nucleotide polymorphism (cSNP) loci. The personal identification and paternity identification abilities of the panel were evaluated, and a preliminary validation of the practical feasibility of the panel was conducted in a clinical WES case. These results indicate that the cSNP panel could be a useful tool for sample tracking in WES.
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- 2024
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5. Venovenous extracorporeal membrane oxygenation for COVID-19 and influenza H1N1 associated acute respiratory distress syndrome: A comparative cohort study in China
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Yonghao Xu, Yin Xi, Shuijiang Cai, Yuheng Yu, Sibei Chen, Weijie Guan, Weibo Liang, Hongkai Wu, Weiqun He, Xilong Deng, Yuanda Xu, Rong Zhang, Manshu Li, Jieyi Pan, Zhenting Liang, Ya Wang, Shaofeng Kong, Xiaoqing Liu, Zheng Lv, and Yimin Li
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Coronavirus disease 2019 ,H1N1 influenza ,Acute respiratory distress syndrome ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background: Venovenous extracorporeal membrane oxygenation (VV-ECMO) has been demonstrated to be effective in treating patients with virus-induced acute respiratory distress syndrome (ARDS). However, whether the management of ECMO is different in treating H1N1 influenza and coronavirus disease 2019 (COVID-19)-associated ARDS patients remains unknown. Methods: This is a retrospective cohort study. We included 12 VV-ECMO-supported COVID-19 patients admitted to The First Affiliated Hospital of Guangzhou Medical University, Guangzhou Eighth People's Hospital, and Wuhan Union Hospital West Campus between January 23 and March 31, 2020. We retrospectively included VV-ECMO-supported patients with COVID-19 and H1N1 influenza-associated ARDS. Clinical characteristics, respiratory mechanics including plateau pressure, driving pressure, mechanical power, ventilatory ratio (VR) and lung compliance, and outcomes were compared. Results: Data from 25 patients with COVID-19 (n=12) and H1N1 (n=13) associated ARDS who had received ECMO support were analyzed. COVID-19 patients were older than H1N1 influenza patients (P=0.004). The partial pressure of arterial carbon dioxide (PaCO2) and VR before ECMO initiation were significantly higher in COVID-19 patients than in H1N1 influenza patients (P
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- 2023
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6. High driving pressure ventilation induces pulmonary hypertension in a rabbit model of acute lung injury
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Yonghao Xu, Yu Zhang, Jie Zhang, Weibo Liang, Ya Wang, Zitao Zeng, Zhenting Liang, Zhaoyi Ling, Yubiao Chen, Xiumei Deng, Yongbo Huang, Xiaoqing Liu, Haibo Zhang, and Yimin Li
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Acute respiratory distress syndrome ,Pulmonary hypertension ,Mechanical ventilation ,Ferroptosis ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Mechanical ventilation may cause pulmonary hypertension in patients with acute lung injury (ALI), but the underlying mechanism remains elucidated. Methods ALI was induced in rabbits by a two-hit injury, i.e., hydrochloric acid aspiration followed by mechanical ventilation for 1 h. Rabbits were then ventilated with driving pressure of 10, 15, 20, or 25 cmH2O for 7 h. Clinicopathological parameters were measured at baseline and different timepoints of ventilation. RNA sequencing was conducted to identify the differentially expressed genes in high driving pressure ventilated lung tissue. Results The two-hit injury induced ALI in rabbits was evidenced by dramatically decreased PaO2/FiO2 in the ALI group compared with that in the control group (144.5 ± 23.8 mmHg vs. 391.6 ± 26.6 mmHg, P
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- 2023
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7. Single-nucleus transcriptomic mapping of blast-induced traumatic brain injury in mice hippocampus
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Lingxuan Zhang, Qiuyun Yang, Ruixuan Yuan, Manrui Li, Meili Lv, Lin Zhang, Xiaoqi Xie, Weibo Liang, and Xiameng Chen
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Science - Abstract
Abstract As a significant type of traumatic brain injury (TBI), blast-induced traumatic brain injury (bTBI) frequently results in severe neurological and psychological impairments. Due to its unique mechanistic and clinical features, bTBI presents diagnostic and therapeutic challenges compared to other TBI forms. The hippocampus, an important site for secondary injury of bTBI, serves as a key niche for neural regeneration and repair post-injury, and is closely associated with the neurological outcomes of bTBI patients. Nonetheless, the pathophysiological alterations of hippocampus underpinning bTBI remain enigmatic, and a corresponding transcriptomic dataset for research reference is yet to be established. In this investigation, the single-nucleus RNA sequencing (snRNA-seq) technique was employed to sequence individual hippocampal nuclei of mice from bTBI and sham group. Upon stringent quality control, gene expression data from 17,278 nuclei were obtained, with the dataset’s reliability substantiated through various analytical methods. This dataset holds considerable potential for exploring secondary hippocampal injury and neurogenesis mechanisms following bTBI, with important reference value for the identification of specific diagnostic and therapeutic targets for bTBI.
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- 2023
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8. DNALI1 Promotes Neurodegeneration after Traumatic Brain Injury via Inhibition of Autophagosome‐Lysosome Fusion
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Xulong Ding, Shuqiang Cao, Qing Wang, Bin Du, Kefeng Lu, Shiqian Qi, Ying Cheng, Qing‐zhang Tuo, Weibo Liang, and Peng Lei
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autophagy ,chronic traumatic encephalopathy ,DNALI1 ,neurodegeneration ,traumatic brain injury ,Science - Abstract
Abstract Traumatic brain injury (TBI) leads to progressive neurodegeneration that may be caused by chronic traumatic encephalopathy (CTE). However, the precise mechanism remains unclear. Herein, the study identifies a crucial protein, axonemal dynein light intermediate polypeptide 1 (DNALI1), and elucidated its potential pathogenic role in post‐TBI neurodegeneration. The DNALI1 gene is systematically screened through analyses of Aging, Dementia, and TBI studies, confirming its elevated expression both in vitro and in vivo. Moreover, it is observed that altered DNALI1 expression under normal conditions has no discernible effect. However, upon overexpression, DNALI1 inhibits autophagosome‐lysosome fusion, reduces autophagic flux, and exacerbates cell death under pathological conditions. DNALI1 silencing significantly enhances autophagic flux and alleviates neurodegeneration in a CTE model. These findings highlight DNALI1 as a potential key target for preventing TBI‐related neurodegeneration.
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- 2024
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9. Multi-view Adaptive Bone Activation from Chest X-Ray with Conditional Adversarial Nets.
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Chaoqun Niu, Yuan Li, Jian Wang, Jizhe Zhou, Tu Xiong, Dong Yu, Huili Guo, Lin Zhang, Weibo Liang, and Jiancheng Lv 0001
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- 2023
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10. Single-nucleus profiling of adult mice sub-ventricular zone after blast-related traumatic brain injury
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Manrui Li, Xiameng Chen, Qiuyun Yang, Shuqiang Cao, Steven Wyler, Ruixuan Yuan, Lingxuan Zhang, Miao Liao, Meili Lv, Feng Wang, Yadong Guo, Jihong Zhou, Lin Zhang, Xiaoqi Xie, and Weibo Liang
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Science - Abstract
Abstract Explosive blast-related traumatic brain injuries (bTBI) are common in war zones and urban terrorist attacks. These bTBIs often result in complex neuropathologic damage and neurologic complications. However, there is still a lack of specific strategies for diagnosing and/or treating bTBIs. The sub-ventricular zone (SVZ), which undergoes adult neurogenesis, is critical for the neurological maintenance and repair after brain injury. However, the cellular responses and mechanisms that trigger and modulate these activities in the pathophysiological processes following bTBI remain poorly understood. Here we employ single-nucleus RNA-sequencing (snRNA-seq) of the SVZ from mice subjected to a bTBI. This data-set, including 15272 cells (7778 bTBI and 7494 control) representing all SVZ cell types and is ideally suited for exploring the mechanisms underlying the pathogenesis of bTBIs. Additionally, it can serve as a reference for future studies regarding the diagnosis and treatment of bTBIs.
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- 2023
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11. Progress in age estimation based on DNA methylation
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Yihang Huang, Shengqiu Qu, Yuanyuan Xiao, Hui Jian, and Weibo Liang
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age estimation ,dna methylation ,forensic genetics ,Public aspects of medicine ,RA1-1270 - Abstract
In forensic practice, the age of suspects or victims is crucial information that aids in the resolution of cases. In recent years, age estimation based on DNA methylation has gained significant attention in forensic science. DNA methylation, an epigenetic marker, undergoes specific changes with age, making it a valuable tool for inferring the age of samples left at crime scenes. Therefore, the identification of age-related DNA methylation markers and the development of novel age estimation models are of great importance in forensic medicine. Numerous studies in the past decade have successfully established age estimation models based on DNA methylation, demonstrating excellent sensitivity and accuracy. To provide a comprehensive review, the authors of this paper conducted a systematic review of relevant articles published from 2012 to the present. We used keywords such as “forensic,” “DNA methylation,” and “age estimation” to retrieve pertinent articles from the Web of Science database. The review covers various aspects, including the sources of sample tissues used for age estimation, DNA methylation conversion methods, and different techniques for DNA methylation detection. In addition, the paper reviews the modeling methods for age estimation based on DNA methylation and factors that can influence DNA methylation. Overall, this review serves as a valuable reference for forensic genetics, offering insights into the latest advancements in age estimation using DNA methylation. As the field of forensic science continues to evolve, the integration of DNA methylation-based age estimation into practice is expected to enhance the accuracy and reliability of age determination in criminal investigations.
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- 2023
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12. A paternity testing case using FFPE tissue
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Jinlong Song, Guihong Liu, Shengqiu Qu, and Weibo Liang
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dna extraction ,formalin-fixed paraffin-embedded tissue ,paternity test ,short tandem repeat typing ,Public aspects of medicine ,RA1-1270 - Abstract
Formalin-fixed and paraffin-embedded (FFPE) tissues provide a wealth of pathological information crucial for clinical and forensic examinations. Formalin induces robust complexes between DNA and proteins, impacting DNA extraction and complicating short tandem repeat (STR) typing for personal identification and paternity testing. Here, we present a case of paternity testing involving one FFPE tissue and one blood specimen. We compared four DNA extraction methods and analyzed the obtained products from the most successful approach. To ensure robust statistical support, we used a combination of three STR kits for the analysis. This case demonstrates the viability of using multiple kits in tandem for STR profiling of FFPE tissues.
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- 2023
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13. Patients with infectious diseases undergoing mechanical ventilation in the intensive care unit have better prognosis after receiving metagenomic next-generation sequencing assay
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Yin Xi, Jing Zhou, Zhimin Lin, Weibo Liang, Chun Yang, Dongdong Liu, Yonghao Xu, Lingbo Nong, Sibei Chen, Yuheng Yu, Weiqun He, Jie Zhang, Rong Zhang, Xuesong Liu, Xiaoqing Liu, Ling Sang, Yuanda Xu, and Yimin Li
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Metagenomic next-generation sequencing ,Intensive care unit ,Severe pneumonia ,Prognosis ,Pathogens diagnosis ,Mortality ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: To evaluate the relation between metagenomic next-generation sequencing (mNGS) and the prognosis of patients with infectious diseases undergoing mechanical ventilation in the intensive care unit (ICU). Methods: This is a single-center observational study, comparing nonrandomly assigned diagnostic approaches. We analyzed the medical records of 228 patients with suspected infectious diseases undergoing mechanical ventilation in the ICU from March 2018 to May 2020. The concordance of pathogen results was also assessed for the results of mNGS, culture, and polymerase chain reaction assays. Results: The 28-day mortality of the patients in the mNGS group was lower after the baseline difference correction (19.23% (20/104) vs 29.03% (36/124) , P = 0.039). Subgroup analysis showed that mNGS assay was associated with improved 28-day mortality of patients who are not immunosuppressed (14.06% vs 29.82%, P = 0.018). Not performing mNGS assay, higher acute physiology and chronic health evaluation II score, and hypertension are independent risk factors for 28-day mortality. The mNGS assay presented an advantage in pathogen positivity (69.8% double-positive and 25.0% mNGS-positive only), and the concordance between these two assays was 79.0%. Conclusion: mNGS survey may be associated with a better prognosis by reducing 28-day mortality of patients with infectious diseases on mechanical ventilation in the ICU. This technique presented an advantage in pathogen positivity over traditional methods.
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- 2022
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14. Assess the diversity of gut microbiota among healthy adults for forensic application
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Shuangshuang Wang, Feng Song, Haoyu Gu, Zhilong Shu, Xiaowen Wei, Ke Zhang, Yuxiang Zhou, Lanrui Jiang, Zefei Wang, Jienan Li, Haibo Luo, and Weibo Liang
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Gut microbiota ,Forensic science ,Microbiota diversity ,16S rRNA ,Microbiology ,QR1-502 - Abstract
Abstract Background Human gut microbiota is individually unique that hints the microbiota in fecal traces left in the crime scene could act as a potential biomarker for forensic personal identification. Next-generation DNA sequencing and bioinformatic analysis of fecal samples are revolutionizing our insights into gut microbial communities. While the formation of the gut microbiota is known to be multifactorial, it is unclear whether these characteristics can be applied to forensic applications. Therefore, the gut microbiota of healthy adults with different traits was investigated in this study. Results Based on the STAMP analysis of each study group, the difference in gut microbiota composition of male and female subjects was observed. The male group was characterized by taxa in the phylum Proteobacteria, while the female group was described by Synergistetes phylum. The gut bacterial community assembly mechanism was mainly affected by the deterministic process. In addition, gut microbiota composition showed meaningful discrimination in each of the BMI groups. At the phylum level, in male subjects, increased representative phyla were Patescibacteria (p
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- 2022
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15. Applying amplification refractory mutation system technique to detecting cell-free fetal DNA for single-gene disorders purpose
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Yu Tan, Hui Jian, Ranran Zhang, Jing Wang, Cong Zhou, Yuanyuan Xiao, Weibo Liang, and Li Wang
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non-invasive prenatal diagnosis (NIPD) for single-gene disorders ,amplification refractory mutation system (ARMS) ,cell-free fetal DNA (cffDNA) ,allele-specific primers ,capillary electrophoresis ,Genetics ,QH426-470 - Abstract
Non-invasive prenatal diagnosis for single-gene disorders (NIPD) is still in development and deserves further study. The advent of next-generation sequencing technology significantly improved the detection of multiple mutations for non-invasive prenatal diagnosis for single-gene disorder purposes. However, bespoke amplicon-based NGS assays are costly. In this study, we developed a new strategy for non-invasive prenatal screening for single-gene disorders based on a capillary electrophoresis (CE) platform using an amplification refractory mutation system (ARMS)-PCR technique. Allele-specific primers for several disease-correlated mutations were designed, and subsequently, sensitivity and specificity assays were conducted. Assays on simulated two-person DNA mixtures showed that three primers targeting the mutant allele could detect minor DNA components in 1:500 mixtures. All primers showed positive results at 0.01 ng of the template DNA. Cell-free fetal DNA was extracted from a pregnant woman’s peripheral blood for the detection of paternally inherited mutations. Our results showed that one primer successfully amplified the mutant allele of fetal DNA in maternal plasma, which was confirmed by genotyping the genomic DNA extracted from amniotic fluid. This study suggested that the ARMS-PCR technique, a fast and cost-effective method, might be a promising method used to target de novo or paternally inherited pathogenic mutations in maternal plasma.
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- 2023
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16. Author Correction: Single-nucleus profiling of adult mice sub-ventricular zone after blast-related traumatic brain injury
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Manrui Li, Xiameng Chen, Qiuyun Yang, Shuqiang Cao, Steven Wyler, Ruixuan Yuan, Lingxuan Zhang, Miao Liao, Meili Lv, Feng Wang, Yadong Guo, Jihong Zhou, Lin Zhang, Xiaoqi Xie, and Weibo Liang
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Science - Published
- 2023
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17. Corrigendum: A novel SNP-STR system based on a capillary electrophoresis platform
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Hui Jian, Li Wang, Meili Lv, Yu Tan, Ranran Zhang, Shengqiu Qu, Jijun Wang, Lagabaiyila Zha, Lin Zhang, and Weibo Liang
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SNP-STR ,microhaplotype ,capillary electrophoresis ,forensic genetics ,unbalanced DNA mixtures ,likelihood ratio (LR) ,Genetics ,QH426-470 - Published
- 2022
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18. Temporal Changes of the Oral and Fecal Microbiota after Mild Traumatic Brain Injury in Rats by 16S rRNA Sequencing
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Shujuan Wang, Yanjie Shang, Zhiyun Pi, Ziqi Zhou, Xiangyan Zhang, Lipin Ren, Weibo Liang, Yadong Guo, Jifeng Cai, and Changquan Zhang
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mild traumatic brain injury ,microbiota ,brain-gut-microbiota axis ,forensic identification ,16S rRNA ,Biology (General) ,QH301-705.5 - Abstract
A mild traumatic brain injury (mTBI) can increase the risk of neurodegenerative-related disease, and serious long-term outcomes are often overlooked. In forensic science, the accurate identification of mTBIs can directly affect the application of evidence in practice cases. Recent research has revealed that the oral cavity and fecal microbiota play a fundamental role in deeply interconnecting the gut and brain injury. Therefore, we investigated the relationship between the temporal changes of the oral cavity and fecal bacterial communities with damage identification and post-injury time estimation after mTBI. In this study, we analyzed the oral cavity and fecal bacterial communities in mTBI rats under 12 different post-injury times (sham, 0 h, 2 h, 6 h, 12 h, 24 h, 2 d, 3 d, 5 d, 7 d, 10 d, and 14 d post-injury) using 16S rRNA sequencing technology. The sequence results revealed bacteria belonging to 36 phyla, 82 classes, 211 orders, 360 families, 751 genera, and 1398 species. Compared to the sham group, the relative abundance of the bacterial communities varied markedly in the post-injury groups. Importantly, our data demonstrated that Fusobacteria, Prevotellaceae, Ruminococcaceae, and Lactobacillaceae might be the potential candidates for mTBI identification, and 2 h post-injury was a critical time point to explore the temporal changes of mTBI injury-time estimation. The results also provide new ideas for mTBI treatment in the clinic.
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- 2023
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19. Set of 15 SNP-SNP Markers for Detection of Unbalanced Degraded DNA Mixtures and Noninvasive Prenatal Paternity Testing
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Ranran Zhang, Yu Tan, Li Wang, Hui Jian, Jing Zhu, Yuanyuan Xiao, Mengyu Tan, Jiaming Xue, Fan Yang, and Weibo Liang
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SNP-SNP microhaplotype ,amplification-refractory mutation system PCR ,SNaPshot ,unbalanced and degraded mixture ,cell-free fetal DNA ,noninvasive prenatal paternity testing ,Genetics ,QH426-470 - Abstract
Unbalanced and degraded mixtures (UDM) are very common in forensic DNA analysis. For example, DNA signals from criminal suspects are masked by a large amount of DNA from victims, or cell-free fetal DNA (cffDNA) in maternal plasma is masked by a high background of maternal DNA. Currently, detecting minor DNA in these mixtures is complex and challenging. We developed a new set of SNP-SNP microhaplotypes with short amplicons, and we successfully genotyped them using the new method of amplification-refractory mutation system PCR (ARMS-PCR) combined with SNaPshot technology based on a capillary electrophoresis (CE) platform. This panel reflects a high polymorphism in the Southwest Chinese Han population and thus has excellent potential for mixture studies. We evaluated the feasibility of this panel for UDM detection and noninvasive prenatal paternity testing (NIPPT). Fifteen SNP-SNPs detected minor DNA of homemade DNA mixtures, with a sensitivity of 0.025–0.05 ng and a specificity of 1:1,000. In addition, the panel successfully genotyped degraded DNA from single and mixed samples. Finally, 15 SNP-SNPs were applied to 26 trios. All samples displayed positive results with at least one marker to detect cffDNA. Besides, all fetal alleles in maternal plasma were confirmed by genotyping fetal genomic DNA from amniocentesis and paternal genomic DNA from peripheral blood. The results indicated that the SNP-SNP strategy based on the CE platform was useful for UDM detection and NIPPT.
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- 2022
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20. miR-212-5p attenuates ferroptotic neuronal death after traumatic brain injury by targeting Ptgs2
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Xiao Xiao, Youjing Jiang, Weibo Liang, Yanyun Wang, Shuqiang Cao, He Yan, Linbo Gao, and Lin Zhang
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Traumatic brain injury (TBI) ,Ferroptosis ,miR-212-5p ,Prostaglandin endoperoxide synthase-2 (Ptgs2) ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Ferroptosis, a newly discovered form of iron-dependent regulated cell death, has been implicated in traumatic brain injury (TBI). MiR-212-5p has previously been reported to be downregulated in extracellular vesicles following TBI. To investigate whether miR-212-5p is involved in the ferroptotic neuronal death in TBI mice, we first examined the accumulation of malondialdehyde (MDA) and ferrous ion, and the expression of ferroptosis-related molecules at 6 h, 12 h, 24 h, 48 h and 72 h following controlled cortical impact (CCI) in mice. There was a significant upregulation in the expression of Gpx4 and Acsl4 at 6 h, Slc7a11 from 12 h to 72 h, and Nox2 and Sat1 from 6 h to 72 h post injury. Similarly, an upregulation in the expression of Gpx4 at 6 h, Nox2 from 6 h to 72 h, xCT from 12 h to 72 h, and Sat1 at 72 h after CCI was observed at the protein level. Interestingly, MDA and ferrous ion were increased whereas miR-212-5p was decreased in the CCI group compared to the sham group. Furthermore, we found that overexpression of miR-212-5p attenuated ferroptosis while downregulation of miR-212-5p promoted ferroptotic cell death partially by targeting prostaglandin-endoperoxide synthase-2 (Ptgs2) in HT-22 and Neuro-2a cell lines. In addition, administration of miR-212-5p in CCI mice significantly improved learning and spatial memory. Collectively, these findings indicate that miR-212-5p may protect against ferroptotic neuronal death in CCI mice partially by targeting Ptgs2.
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- 2019
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21. A Novel SNP-STR System Based on a Capillary Electrophoresis Platform
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Hui Jian, Li Wang, Meili Lv, Yu Tan, Ranran Zhang, Shengqiu Qu, Jijun Wang, Lagabaiyila Zha, Lin Zhang, and Weibo Liang
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SNP-STR ,microhaplotype ,capillary electrophoresis ,forensic genetics ,unbalanced DNA mixtures ,likelihood ratio (LR) ,Genetics ,QH426-470 - Abstract
Various compound markers encompassing two or more variants within a small region can be regarded as generalized microhaplotypes. Many of these markers have been investigated for various forensic purposes, such as individual identification, deconvolution of DNA mixtures, or forensic ancestry inference. SNP-STR is a compound biomarker composed of a single nucleotide polymorphism (SNP) and a closely linked short tandem repeat polymorphism (STR), and possess the advantages of both SNPs and STRs. In addition, in conjunction with a polymerase chain reaction (PCR) technique based on the amplification refractory mutation system (ARMS), SNP-STRs can be used for forensic unbalanced DNA mixture analysis based on capillary electrophoresis (CE), which is the most commonly used platform in worldwide forensic laboratories. Our previous research reported 11 SNP-STRs, but few of them are derived from the commonly used STR loci, for which existing STR databases can be used as a reference. For maximum compatibility with existing DNA databases, in this study, we screened 18 SNP-STR loci, of which 14 were derived from the expanded CODIS core loci set. Stable and sensitive SNP-STR multiplex PCR panels based on the CE platform were established. Assays on simulated two-person DNA mixtures showed that all allele-specific primers could detect minor DNA components in 1:500 mixtures. Population data based on 113 unrelated Chengdu Han individuals were investigated. A Bayesian framework was developed for the likelihood ratio (LR) evaluation of SNP-STR profiling results obtained from two-person mixtures. Furthermore, we report on the first use of SNP-STRs in casework to show the advantages and limitations for use in practice. Compared to 2.86 × 103 for autosomal STR kits, the combined LR reached 7.14 × 107 using the SNP-STR method in this casework example.
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- 2021
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22. Moringa oleifera Lam and its Therapeutic Effects in Immune Disorders
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Xiao Xiao, Jue Wang, Chen Meng, Weibo Liang, Tao Wang, Bin Zhou, Yanyun Wang, Xiaolei Luo, Linbo Gao, and Lin Zhang
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Moringa oleifera ,infection ,chronic inflammation ,physicochemical irritation ,autoimmune disorders ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Moringa oleifera Lam., a plant native to tropical forests of India, is characterized by its versatile application as a food additive and supplement therapy. Accumulating evidence shows that Moringa plays a critical role in immune-related diseases. In this review, we cover the history, constituents, edibility, and general medicinal value of Moringa. The effects of Moringa in treating immune disorders are discussed in detail. Moringa can not only eliminate pathogens, including bacteria, fungi, viruses, and parasites, but also inhibit chronic inflammation, such as asthma, ulcerative colitis, and metabolic diseases. Additionally, Moringa can attenuate physical and chemical irritation-induced immune disorders, such as metal intoxication, drug side effects, or even the adverse effect of food additives. Autoimmune diseases, like rheumatoid arthritis, atopic dermatitis, and multiple sclerosis, can also be inhibited by Moringa. Collectively, Moringa, with its multiple immune regulatory bioactivities and few side effects, has a marked potential to treat immune disorders.
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- 2020
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23. Multi-Indel: A Microhaplotype Marker Can Be Typed Using Capillary Electrophoresis Platforms
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Shengqiu Qu, Meili Lv, Jiaming Xue, Jing Zhu, Li Wang, Hui Jian, Yuqing Liu, Ranran Zhang, Lagabaiyila Zha, Weibo Liang, and Lin Zhang
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multi-indel ,microhaplotype ,capillary electrophoresis ,forensic genetics ,paternity tests ,Genetics ,QH426-470 - Abstract
Since the concept of microhaplotypes was proposed by Kidd in 2013, various microhaplotype markers have been investigated for various forensic purposes, such as individual identification, deconvolution of DNA mixtures, or forensic ancestry inference. In our opinion, various compound markers are also regarded as generalized microhaplotypes, encompassing two or more variants in a short segment of DNA (e.g., 200 bp). That is, a set of variants (referred to herein as multi-variants) within a certain length includes single nucleotide polymorphisms (SNP), insertion/deletion polymorphisms (Indels), or short tandem repeat polymorphisms (STRs). At present, multi-variant is mainly aimed at multi-SNPs. However, the haplotype genotyping of multi-variants relies on single-strand analysis, mainly using massively parallel sequencing (MPS). Here, we describe a method based on a capillary electrophoresis (CE) platform that can directly obtain haplotypes of individuals. Several microhaplotypes consisting of three or more Indels with different insertion or deletion lengths in the range of less than 200 bp were screened out, each of which had at least three haplotypes. As a result, the haplotype of an individual was reflected by the length of its polymorphism. Finally, we established a multiplex amplification system containing 18 multi-Indel markers that could identify haplotypes on each chromosome of an individual. The combined power of discrimination (CPD) and the cumulative probability of exclusion (CPE) were 0.999999999997234 and 0.9984, respectively.
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- 2020
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24. CR-GAN: Automatic craniofacial reconstruction for personal identification.
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Yuan Li, Jian Wang, Weibo Liang, Hui Xue, Zhenan He 0001, Jiancheng Lv 0001, and Lin Zhang
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- 2022
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25. Implementation of ADE-CFS-PML for the Single Field WCS-FDTD Method
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Weibo Liang, Kanglong Zhang, Yue Wu, Mengjun Wang, Chao Fan, Hongxing Zheng, and Erping Li
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- 2023
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26. Finite-time stability and stabilization of interval type-2 fuzzy systems with time delay.
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Songyi Dian, Weibo Liang, and Tao Zhao 0003
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- 2018
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27. Improving DNA mixtures analysis using compound markers composed of InDels and SNPs screened from the whole genome with next-generation sequencing.
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Mengyu Tan, Jiaming Xue, Qiushuo Wu, Yazi Zheng, Guihong Liu, Ranran Zhang, Mengna Wu, Jinlong Song, Yuanyuan Xiao, Dezhi Chen, Meili Lv, Miao Liao, Shengqiu Qu, and Weibo Liang
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- 2024
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28. Population genetics of 27 Y-STRs for the Yi population from Liangshan Yi Autonomous Prefecture, China
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Dezhi, Chen, Meili, Lv, Yingjian, Huang, Yiping, Hou, Yu, Tan, and Weibo, Liang
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- 2021
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29. The population genetics characteristics of Ion AmpliSeq™ MH-74 plex microhaplotype research panel
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Shengqiu Qu, Peter M. Schneider, Robert Lagacé, Maximilian Neis, Weibo Liang, and Lin Zhang
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Genetics ,Pathology and Forensic Medicine - Published
- 2022
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30. An NGS-based microhaplotype system with high polymorphism for forensic DNA mixtures analysis
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Mengyu Tan, Jiaming Xue, Ranran Zhang, Hui Jian, Yuanyuan Xiao, Guihong Liu, Yazi Zheng, Qiushuo Wu, Shengqiu Qu, and Weibo Liang
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Genetics ,Pathology and Forensic Medicine - Published
- 2022
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31. Improved Leapfrog LOD-FDTD Method With Controlling Parameters
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Chao Fan, Er-Ping Li, Kanglong Zhang, Yue Wu, Zheng Hongxing, Wang Mengjun, and Weibo Liang
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Computer science ,Finite-difference time-domain method ,Electrical and Electronic Engineering ,Condensed Matter Physics ,Computational science - Published
- 2022
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32. Aminophylline targets miR-128-3p/Slc7a11 axis to attenuate neuronal ferroptosis after traumatic brain injury
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Yang Xu, Jinyuan Liu, Yuwen Sun, Qiuyun Yang, Manrui Li, Miao Liao, Meili Lv, Weibo Liang, and Xiameng Chen
- Abstract
Traumatic brain injury (TBI) is a significant global health issue due to its high morbidity and mortality, as well as its adverse outcomes. The resulting excessive healthcare and economic burden make it urgent to find effective drugs for TBI. Aminophylline (AMP), a classical drug widely used in the treatment of cardiovascular diseases and bronchiectasis, has recently been found to play an important role in protecting neurons in hypoxia brain injury by a variety of mechanisms. However, its therapeutic effect on TBI remains unknown. To this end, the present study aims to explore whether and how AMP improves TBI prognosis, as well as the underlying mechanisms. We found that AMP administration ameliorated neuronal ferroptosis in the cortex, improved cognitive impairment and motor dysfunction in mice following controlled cortical impact (CCI). microRNA (miRNA) profiling and related validation experiments revealed that miR-128-3p expression significantly decreased at 3h and 6h after CCI, and this change was further enhanced after AMP administration. Subsequent gain of function studies demonstrated that over-expressing miR-128-3p can aggravate neuronal ferroptosis by targeting recombinant solute carrier family 7, member 11 (Slc7a11), through which AMP exerted its therapeutic role in attenuating the cognitive impairment and motor dysfunction in mice following CCI. Overall, this study reports for the first time that AMP protects against ferroptotic neuronal death in CCI mice through miR-128-3p / Slc7a11 axis, which could be a potential treatment for TBI patients.
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- 2023
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33. Therapeutic assessment of crystalloid fluid resuscitation in experimental military injury
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Xiaoqi Xie, Manrui Li, Feng Wang, Xiameng Chen, Shuqiang Cao, Yizhi Zhou, Xiaofeng Ou, Min He, Hanzi Cai, Wei Dai, Dangfeng Yuan, Li Zeng, Lei Ni, Jingyong Li, Yang Zhou, Weibo Liang, and Jihong Zhou
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Pharmaceutical Science ,Biotechnology - Abstract
Background: A significant part of blast injury is accompanied by hemorrhagic shock (BS), while research on its fluid resuscitation strategies have not been reported. Although blood products are usually recommended in most resuscitation cases, they are less available in certain conditions. To this end, here, we focused on a widely used and more accessible fluid type- crystalloid fluid, in BS treatment. Methods: We conducted studies in rats comparing the therapeutic effects of 3 different crystalloid solutions at different time points after BS, and explored the underlying mechanisms. Generally, the survival rates gradually dropped along with the time when fluid resuscitation was given. Results: Among different types of solution, the hypertonic saline (HS) group showed th objective: A significant part of blast injury is accompanied by hemorrhagic shock (BS), while researches on its fluid resuscitation strategies have not been reported. Although blood products are usually recommended in most resuscitation cases, they are less available in certain conditions. To this end, here we focused on a widely used and more accessible fluid type- crystalloid fluid, in BS treatment. Results: Among different types of solution, the hypertonic saline (HS) group showed the highest survival rates. The lactated Ringer’s solution (LR) only displayed lifesaving effect at 0.5h resuscitation time point. Moreover, it is worth noting that the survival rates of the normal saline (NS) group at all the time points were lower than the non-treatment control. Mechanism study in rats indicated that the therapeutic differences may be caused by varied degrees of pulmonary edema and inflammatory responses under different crystalloid fluid resuscitation. Conclusions: In conclusion, we assessed the effects and investigated the mechanisms of different crystalloid fluid resuscitation strategies for BS for the first time, which potentially contributes to the establishment of guidance for crystalloid fluid resuscitation of BS patients.
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- 2023
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34. Investigation of Leaky-Wave Antenna With Stable Wide Beam-Scanning Characteristic
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Ziwei Li, Wenjie Cui, Ruipeng Liu, Kanglong Zhang, Weibo Liang, Mengjun Wang, Chao Fan, Hongxing Zheng, and Erping Li
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Materials science ,Optics ,Transmission line ,business.industry ,Leaky wave antenna ,Dielectric resonator ,Dielectric ,Electrical and Electronic Engineering ,Antenna (radio) ,Antenna gain ,business ,Radiation properties ,Microstrip - Abstract
In this paper, a compact magnetic dipole composite right/left-handed transmission line (CRLH-TL) leaky-wave antenna (LWA) is proposed, which is periodically loaded with rectangular gaps and short stubs. And then, in light of the dielectric resonator with a high dielectric constant, low loss tangent and good radiation performance, we further add an alumina ceramic block (ACB) to stack on the gap in each CRLH-TL LWA’s unit cell for forming the magnetic dipole, thus, wide beam scanning range and compactness are achieved. To validate this design, a traditional uniform CRLH-TL LWA is investigated in detail. The results of S-parameters, electrical field distribution and radiation properties illuminate the effects of introducing the ACB, such as impendence matching improvement and high radiation efficiency. Furthermore, to verify the flexible control of the balanced condition and the attenuation constant by changing the microstrip gap width and the ACB thickness predicted in the circuit model analysis, a nonuniform CRLH-TL LWA with quasi-constant amplitude is fabricated. Experiment results demonstrate a higher antenna gain and the stability of wide beam scanning range under the condition of a compact design.
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- 2022
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35. Secondary infection in severe and critical COVID-19 patients in China: a multicenter retrospective study
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Chun Pan, Nuofu Zhang, Zhimin Lin, Shiyue Li, Wenjuan Wu, Ying Pan, Yonghao Xu, Dingyu Zhang, Dongdong Liu, Ming Zhong, Chang'an Li, Xiaoqing Liu, Zheng Lv, Nanshan Zhong, Wei Zhang, Ling Sang, Yuanda Xu, Bin Song, Dan Ye, Nanshan Chen, Weibo Liang, Xuesong Liu, Jiaan Xia, Sibei Chen, Yin Xi, Li Jiang, Xia Zheng, and Yimin Li
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Adult ,medicine.medical_specialty ,Secondary infection ,Carbapenem-resistant enterobacteriaceae ,Internal medicine ,Epidemiology ,medicine ,Humans ,Pandemics ,Survival rate ,Retrospective Studies ,Advanced and Specialized Nursing ,Cross Infection ,biology ,Coinfection ,SARS-CoV-2 ,business.industry ,COVID-19 ,Retrospective cohort study ,Middle Aged ,medicine.disease ,biology.organism_classification ,Anti-Bacterial Agents ,Acinetobacter baumannii ,Stenotrophomonas maltophilia ,Anesthesiology and Pain Medicine ,business - Abstract
Background. Since 2020 COVID-19 pandemic became an emergent public sanitary incident. The epidemiology data and the impact on prognosis of secondary infection in severe and critical COVID-19 patients in China remained largely unclear.Methods. We retrospectively reviewed medical records of all adult patients with laboratory-confirmed COVID-19 who were admitted to ICUs from January 18th 2020 to April 26th 2020 at two hospitals in Wuhan, China and one hospital in Guangzhou, China. We measured the frequency of bacteria and fungi cultured from respiratory tract, blood and other body fluid specimens. The risk factors for and impact of secondary infection on clinical outcomes were also assessed. Results. Secondary infections were very common (86.6%) when patients were admitted to ICU for >72 hours. The majority of infections were respiratory, with the most common organisms being Klebsiella pneumoniae (24.5%), Acinetobacter baumannii (21.8%), Stenotrophomonas maltophilia (9.9%), Candida albicans (6.8%), and Pseudomonas spp. (4.8%). Furthermore, the proportions of multidrug resistant (MDR) bacteria and carbapenem resistant Enterobacteriaceae (CRE) were high. We also found that age ≥60 years and mechanical ventilation ≥13days independently increased the likelihood of secondary infection. Finally, patients with positive cultures had reduced ventilator free days in 28 days and patients with CRE and/or MDR bacteria positivity showed lower 28 day survival rate.Conclusions. In a retrospective cohort of severe and critical COVID-19 patients admitted to ICUs in China, the prevalence of secondary infection was high, especially with CRE and MDR bacteria, resulting in poor clinical outcomes.
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- 2021
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36. The effect of infertile semen on the mRNA‐based body fluid identification
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Miao Liao, Sicheng Huang, Huan Tian, Yuqing Liu, Qian Feng, Huan Zhao, Xiao Xiao, Fuping Li, Weibo Liang, Duo Peng, and Peng Bai
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Male ,Body fluid ,Infertility ,endocrine system ,urogenital system ,business.industry ,Clinical Biochemistry ,Semen ,urologic and male genital diseases ,medicine.disease ,Biochemistry ,Body Fluids ,Analytical Chemistry ,Male infertility ,Forensic identification ,Andrology ,fluids and secretions ,Discrimination function ,medicine ,Humans ,RNA, Messenger ,business ,Biomarkers ,Infertility, Male - Abstract
In the past decade, mRNA markers have been well demonstrated as promising molecular markers in forensic body fluid identification (BFI), and successfully used in wide applications. Several studies have assessed the performance of semen-specific mRNA markers in distinguishing semen from other common body fluids at the crime scene. Infertility has been reported as a global health problem that is affecting approximately 15% of couples worldwide. Therefore, it is important for forensic researchers to consider the impact of infertility on semen identification. This study aimed to explore the effect of semen from infertile men (hereinafter "infertile semen") on BFI and to identify semen-specific mRNAs that can efficiently and accurately distinguish normal and infertile semen samples from other body fluids. Results showed that the selected five mRNAs (KLK3, TGM4, SEMG1, PRM1, and PRM2) performed a significantly high semen specificity in normal semen. Moreover, KLK3 was slightly influenced by infertile semen samples with over 98% positive results in all semen samples. The accuracy to predict normal semen reached up to 96.6% using the discrimination function Y1 with KLK3 and PRM1. However, when the infertile semen samples were included in discrimination function (function Y2 with KLK3), the accuracy rate of semen identification (including the normal and infertile semen) was down to 89.5%. Besides, the sensitivity of multiplex assay could reach down to 50pg. Our results suggest that it is important to consider the presence of infertile semen when using mRNAs to identify semen samples, which would have a far-reaching impact in forensic identification.
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- 2021
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37. Editing homologous copies of an essential gene affords crop resistance against two cosmopolitan necrotrophic pathogens
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Xiaofan Liu, Hongxiang Zhang, Daohong Jiang, Weibo Liang, Xuekun Zhang, Yanbo Feng, Yanping Fu, Jiatao Xie, Jiasen Cheng, Qian Tang, Changxing Liu, Yu Zhang, Bo Li, Yang Lin, and Xuefeng Bian
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Rapeseed ,food.ingredient ,disease resistance ,Brassica ,Plant Science ,Plant disease resistance ,food ,cytochrome b‐c1 complex ,CRISPR/Cas9 ,Research Articles ,Botrytis cinerea ,Botrytis ,Plant Diseases ,Genetics ,Genes, Essential ,biology ,Sclerotinia sclerotiorum ,fungi ,Brassica napus ,food and beverages ,grey mould ,biology.organism_classification ,Plant Breeding ,white mould ,Stem rot ,Silique ,Agronomy and Crop Science ,Biotechnology ,Research Article - Abstract
Sclerotinia sclerotiorum and Botrytis cinerea are typical necrotrophic pathogens that can attack more than 700 and 3000 plant species, respectively, and cause huge economic losses across numerous crops. In particular, the absence of resistant cultivars makes the stem rot because of S. sclerotiorum the major threat of rapeseed (Brassica napus) worldwide along with Botrytis. Previously, we identified an effector‐like protein (SsSSVP1) from S. sclerotiorum and a homologue of SsSSVP1 on B. cinerea genome and found that SsSSVP1 could interact with BnQCR8 of rapeseed, a subunit of the cytochrome b‐c1 complex. In this study, we found that BnQCR8 has eight homologous copies in rapeseed cultivar Westar and reduced the copy number of BnQCR8 using CRISPR/Cas9 to improve rapeseed resistance against S. sclerotiorum. Mutants with one or more copies of BnQCR8 edited showed strong resistance against S. sclerotiorum and B. cinerea. BnQCR8‐edited mutants did not show significant difference from Westar in terms of respiration and agronomic traits tested, including the plant shape, flowering time, silique size, seed number, thousand seed weight and seed oil content. These traits make it possible to use these mutants directly for commercial production. Our study highlights a common gene for breeding of rapeseed to unravel the key hindrance of rapeseed production caused by S. sclerotiorum and B. cinerea. In contrast to previously established methodologies, our findings provide a novel strategy to develop crops with high resistance against multiple pathogens by editing only a single gene that encodes the common target of pathogen effectors.
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- 2021
38. Independent risk factors of hypoxemia in patients after surgery with acute type A aortic dissection
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Jieyi Pan, Weixiang Huang, Yimin Li, Weibo Liang, Weiqun He, Lingbo Nong, Yuheng Yu, Sibei Chen, Xuesong Liu, Ling Sang, Yan Lai, Xiaoqing Liu, Yonghao Xu, Yongbo Huang, Yuanda Xu, and Jing Zhou
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medicine.medical_specialty ,medicine.medical_treatment ,Hypoxemia ,law.invention ,Risk Factors ,law ,medicine ,Humans ,Renal replacement therapy ,Hypoxia ,Retrospective Studies ,Advanced and Specialized Nursing ,Aortic dissection ,APACHE II ,business.industry ,Acute kidney injury ,Retrospective cohort study ,Perioperative ,medicine.disease ,Intensive care unit ,respiratory tract diseases ,Surgery ,Aortic Dissection ,Intensive Care Units ,Anesthesiology and Pain Medicine ,medicine.symptom ,business ,circulatory and respiratory physiology - Abstract
This study aimed to investigate independent risk factors of postoperative hypoxemia in patients with acute type A aortic dissection (ATAAD).A single-center retrospective study was conducted with enrolled 75 ATAAD patients following surgery, which were stratified into three groups on the basis of the postoperative PaO2/FiO2 ratio: severe hypoxemia group (PaO2/FiO2 ratio ≤100 mmHg); moderate hypoxemia group (100 mmHgPaO2/FiO2 ratio ≤200 mmHg); and non-hypoxemia group (PaO2/FiO2 ratio200 mmHg). The patient's demography, perioperative laboratory results, operative details, clinical outcomes were collected and analyzed. Univariable and multivariable analyses were performed and logistic regression model was established.The incidence of postoperative severe hypoxemia and hypoxemia was 32% and 52%, respectively. Among the three groups, severe hypoxemia group exhibited a high significance of body mass index (BMI) and preoperative white blood cell (WBC) and main distribution of hypertension; meanwhile, Marfan syndrome was mainly distributed in non-hypoxemia group. On intensive care unit (ICU) admission, severe hypoxemia group exhibited a high significance of Acute Physiology and Chronic Health Evaluation (APACHE II) score of postoperative patients, and more patients would present shock. Moreover, severe hypoxemia group patients had a higher incidence of postoperative acute kidney injury (AKI) and usage of renal replacement therapy, longer length of stay (LOS) of ICU, and shorter 28 days ventilator-free days (VFDs).The incidence of postoperative hypoxemia was high in ATAAD patients owing to comprehensive high-risk factors. Besides, postoperative complications negatively impacted their clinical outcomes.
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- 2021
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39. Evaluation of microhaplotype panels for complex kinship analysis using massively parallel sequencing
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Jiaming Xue, Mengyu Tan, Ranran Zhang, Dezhi Chen, Guihong Liu, Yazi Zheng, Qiushuo Wu, Yuanyuan Xiao, Miao Liao, Shengqiu Qu, and Weibo Liang
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Genetics ,Pathology and Forensic Medicine - Published
- 2023
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40. DNA-based eyelid trait prediction in Chinese Han population
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Feijun Huang, Weibo Liang, Yu Tan, Zhilong Li, Bo Jin, Fan Liu, and Qian Wang
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Genetics ,0303 health sciences ,Candidate gene ,Genome-wide association study ,Single-nucleotide polymorphism ,Biology ,Logistic regression ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,Trait ,SNP ,030216 legal & forensic medicine ,Eyelid ,Allele ,030304 developmental biology - Abstract
The eyelid folding represents one of the most distinguishing features of East Asian faces, involving the absence or presence of the eyelid crease, i.e., single vs. double eyelid. Recently, a genome-wide association study (GWAS) identified two SNPs (rs12570134 and rs1415425) showing genome-wide significant association with the double eyelid phenotype in Japanese. Here we report a confirmatory study in 697 Chinese individuals of exclusively Han origin. Only rs1415425 was statistically significant (P-value = 0.011), and the allele effect was on the same direction with that reported in Japanese. This SNP combined with gender and age explained 10.0% of the total variation in eyelid folding. DNA-based prediction model for the eyelid trait was developed and evaluated using logistic regression. The model showed mild to moderate predictive capacity (AUC = 0.69, sensitivity = 63%, and specificity = 70%). We further selected six additional SNPs by massive parallel sequencing of 19 candidate genes in 24 samples, and one SNP rs2761882 was statistically significant (P-value = 0.027). All predictors including these two SNPs (rs1415425 and rs2761882), gender, and age explained 11.2% of the total variation. The combined prediction model obtained an improved predictive capacity (AUC = 0.72, sensitivity = 62%, and specificity = 66%). Our study thus provided a confirmation of previous GWAS findings and a DNA-based prediction of the eyelid trait in Chinese Han individuals. This model may add value to forensic DNA phenotyping applications considering gender and age can be separately inferred from genetic and epigenetic markers. To further improve the prediction accuracy, future studies should focus on identifying more informative SNPs by large GWASs in East Asian populations.
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- 2021
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41. A Wideband Circular Polarization Implantable Antenna for Health Monitor Microsystem
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Ziwei Li, Weibo Liang, Hongxing Zheng, Ruipeng Liu, Erping Li, Wenjie Cui, Chao Fan, Mengjun Wang, and Kanglong Zhang
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Physics ,Axial ratio ,Acoustics ,Specific absorption rate ,020206 networking & telecommunications ,02 engineering and technology ,Microsystem ,0202 electrical engineering, electronic engineering, information engineering ,Electrical and Electronic Engineering ,Antenna (radio) ,Wideband ,Electrical impedance ,Circular polarization ,Ground plane - Abstract
A compact implantable antenna is proposed for wireless health monitor microsystem, which is operated in frequency of the Industrial, Scientific, and Medical (ISM) band. A circular radiator is cut four L-shaped slots and loading a shortpin between the radiator and ground plane to implement the circular polarization. Two crossed rectangle slots are etched on the ground plane so that the impedance and axial ratio (AR) bandwidths have been expanded at the same time. In addition, to further verify the performance of the antenna for biomedical application, we simulate a microsystem that monitors human health; and establish the simulation environment of the human heart and head. Then, we evaluated the performance of the microsystem in the human tissue simulation environment. The maximum specific absorption rate value satisfies the IEEE standard safety guidelines. The experiment results indicate that the impedance and AR bandwidths of proposed antenna are 2.25–2.78 GHz and 2.32–2.63 GHz, respectively. The total dimensions of π × 42 × 1.27 mm3 are obtained, which is equivalent to π × 0.032 λ 02 × 0.0102 λ 0 ( λ 0 is the free-space wavelength at 2.4 GHz). This compact size is very suitable for the application in health monitoring microsystem.
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- 2021
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42. Single field <scp>HIE FDTD</scp> solver with nonuniform grid stratagem for more fine structure
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Weibo Liang, Yue Wu, Mengjun Wang, Hongxing Zheng, and Erping Li
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Electrical and Electronic Engineering ,Computer Graphics and Computer-Aided Design ,Computer Science Applications - Published
- 2022
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43. Single-nucleus profiling of adult mice sub-ventricular zone after blast-related traumatic brain injury
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Manrui Li, Xiameng Chen, Qiuyun Yang, Shuqiang Cao, Steven Wyler, Ruixuan Yuan, Lingxuan Zhang, Miao Liao, Meili Lv, Feng Wang, Yadong Guo, Jihong Zhou, Lin Zhang, Xiaoqi Xie, and Weibo Liang
- Subjects
Statistics and Probability ,Library and Information Sciences ,Statistics, Probability and Uncertainty ,Computer Science Applications ,Education ,Information Systems - Abstract
Explosive blast-related traumatic brain injuries (bTBI) are common in war zones and urban terrorist attacks. These bTBIs often result in complex neuropathologic damage and neurologic complications. However, there is still a lack of specific strategies for diagnosing and/or treating bTBIs. The sub-ventricular zone (SVZ), which undergoes adult neurogenesis, is critical for the neurological maintenance and repair after brain injury. However, the cellular responses and mechanisms that trigger and modulate these activities in the pathophysiological processes following bTBI remain poorly understood. Here we employ single-nucleus RNA-sequencing (snRNA-seq) of the SVZ from mice subjected to a bTBI. This data-set, including 15272 cells (7778 bTBI and 7494 control) representing all SVZ cell types and is ideally suited for exploring the mechanisms underlying the pathogenesis of bTBIs. Additionally, it can serve as a reference for future studies regarding the diagnosis and treatment of bTBIs.
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- 2022
44. Validation of the Microreader 40Y ID System: a Y-STR multiplex for casework and database samples
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Peng Bai, Shuai Luo, Yifan Li, Jing Zhu, Yuqing Liu, Weibo Liang, Hui Jian, Linzhi Jiang, Dan Guo, Meili Lv, Li Wang, Ranran Zhang, Yu Zailiang, Hao Nie, Yu Tan, and Shengqiu Qu
- Subjects
Male ,Computational biology ,Biology ,Y chromosome ,01 natural sciences ,System a ,Pathology and Forensic Medicine ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,law ,Ethnicity ,Animals ,Humans ,Multiplex ,Y-STR ,030216 legal & forensic medicine ,Polymerase chain reaction ,Chromosomes, Human, Y ,010401 analytical chemistry ,Reproducibility of Results ,DNA Fingerprinting ,0104 chemical sciences ,Database construction ,Microsatellite ,Female ,Polymorphic locus ,Multiplex Polymerase Chain Reaction ,Microsatellite Repeats - Abstract
Y-chromosome-specific short tandem repeat loci (Y-STRs) are commonly analysed in forensic science for paternity testing, familial searches, and, in sexual assault cases, to determine male DNA identity from mixed sources with high background female DNA content. The Microreader 40Y ID System is a six-dye multiplex amplification kit that contains 17 Y-STR loci from the Yfiler Plus PCR Amplification Kit and the powerplex Y23 system (DYS19, DYF385a/b, DYS389I/II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS549, DYS635(Y GATA C4), DYS643, Y GATA H4, DYS460, DYS481, DYS533, DYF387S1, DYS449, DYS518, DYS570, DYS576, and DYS627), plus six high polymorphic loci (DYS444, DYS447, DYS557, DYS596, DYS527 a/b) as well as 4 additional candidate Y-STR loci (DYS593, DYF404S1, DYS645) and a Y-Indel loci (Rs2032678), thereby providing greater efficiency, compatibility, and accuracy. The Microreader 40Y ID System can directly amplify markers from blood or saliva on filter paper or FTA cards, without template extraction or purification, and can also be used for extracted DNA templates. To verify the efficiency and accuracy of the kit, the Microreader 40Y ID System was validated by investigating sensitivity, amplification conditions, male-male and male-female mixtures, PCR inhibition, species specificity, reproducibility, and efficacy with degraded samples. The Y-STR loci were also tested using 437 male samples from Tibet, Han, and Yi. The Microreader 40Y ID System was able to compensate for some of the shortcomings of Y-STR markers in practical applications, such as cost and profile interpretation, and fully meets the domestic Y chromosome database construction specifications and requirements.
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- 2020
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45. Noninvasive ventilation support during fiberoptic bronchoscopy-guided nasotracheal intubation effectively prevents severe hypoxemia
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Chun Yang, Lingbo Nong, Jie Zhang, Rongchang Chen, Dongdong Liu, Yin Xi, Weiqun He, Yimin Li, Weibo Liang, Xiaoqing Liu, Jing Zhou, and Yuheng Yu
- Subjects
Adult ,Male ,Fiberoptic bronchoscopy ,Critical Illness ,medicine.medical_treatment ,Critical Care and Intensive Care Medicine ,Article ,03 medical and health sciences ,0302 clinical medicine ,Severe hypoxemia ,Preoxygenation ,FiO2, fraction of inspired oxygen ,SpO2, Pulse oxygen saturation ,Bronchoscopy ,Intubation, Intratracheal ,medicine ,Fiber Optic Technology ,Humans ,Intubation ,Prospective Studies ,Hypoxia ,FOB, fiberoptic bronchoscopy ,Aged ,Oxygen saturation (medicine) ,Noninvasive Ventilation ,business.industry ,PaO2, arterial blood partial pressure of oxygen ,Tracheal intubation ,030208 emergency & critical care medicine ,Middle Aged ,Respiration, Artificial ,NIV, noninvasive ventilation ,Oxygen ,Treatment Outcome ,030228 respiratory system ,Respiratory failure ,Anesthesia ,Breathing ,Female ,Noninvasive ventilation ,Respiratory Insufficiency ,business - Abstract
Purpose This study investigated the feasibility and efficacy of continuous noninvasive ventilation (NIV) support with 100% oxygen using a specially designed face mask, for reducing desaturation during fiberoptic bronchoscopy (FOB)-guided intubation in critically ill patients with respiratory failure. Materials and methods This was a single-center prospective randomized study. All patients undergoing FOB-guided nasal tracheal intubation were randomized to bag-valve-mask ventilation or NIV for preoxygenation followed by intubation. The NIV group were intubated through a sealed hole in a specially designed face mask during continuous NIV support with 100% oxygen. Control patients were intubated with removal of the mask and no ventilatory support. Results We enrolled 106 patients, including 53 in each group. Pulse oxygen saturation (SpO2) after preoxygenation (99% (96%–100%) vs. 96% (90%–99%), p = .001) and minimum SpO2 during intubation (95% (87%–100%) vs. 83% (74%–91%), p, Highlights • Our study is the first to evaluate NIV during FOB-guided nasotracheal intubation. • NIV support during FOB-guided nasotracheal intubation was effectively prevented severe desaturation during intubation. • We used a specially-designed intubation face mask to ensure that there was no interruption of NIV support during intubation.
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- 2020
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46. Single-cell transcriptome study in forensic medicine: prospective applications
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Qiuyun Yang, Yuhang Wu, Manrui Li, Shuqiang Cao, Yadong Guo, Lin Zhang, Xiameng Chen, and Weibo Liang
- Subjects
Sequence Analysis, RNA ,Gene Expression Profiling ,High-Throughput Nucleotide Sequencing ,Humans ,Forensic Medicine ,Single-Cell Analysis ,Transcriptome ,Pathology and Forensic Medicine - Abstract
Next-generation sequencing and single-cell RNA sequencing (scRNA-seq) technologies have advanced rapidly in recent years. scRNA-seq reveals the unique gene expression of each cell type, providing directions for exploring cell heterogeneity, cell type-specific responses to injury/disease, and the mechanisms underlying these processes. The development of sequencing technology and improved sequencing throughput have brought about a revolution in single-cell transcriptome study, bringing great benefits to the fields of medicine and biomedical science. From our perspective, certain issues in forensic medicine may potentially be addressed using single-cell transcriptome studies; however, this powerful technique has not yet attracted sufficient attention in forensic medicine-associated research. Therefore, examining and reviewing the latest developments and applications of single-cell transcriptome studies, we present our views on the future directions of forensic research using this technology, aiming to expand the frontiers of forensic science.
- Published
- 2022
47. Improved convolutional perfectly matched layer with auxiliary differential equation for the weakly conditionally stable finite‐difference time‐domain method
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Kanglong Zhang, Yue Wu, Weibo Liang, Mengjun Wang, Chao Fan, Hongxing Zheng, and Erping Li
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Electrical and Electronic Engineering ,Computer Graphics and Computer-Aided Design ,Computer Science Applications - Published
- 2022
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48. Intermittent fasting ameliorates neuronal ferroptosis and cognitive impairment in mice after traumatic brain injury
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Qiuyun Yang, Manrui Li, Jinyuan Liu, Lingxuan Zhang, Ruixuan Yuan, Yang Xu, Jingwen Zheng, Shuqiang Cao, Hao Dai, Miao Liao, Meili Lv, Xiaogang Chen, Yadong Guo, Xiaoqi Xie, Lin Zhang, Xiameng Chen, and Weibo Liang
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Nutrition and Dietetics ,Endocrinology, Diabetes and Metabolism - Published
- 2023
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49. An MPS-Based 50plex Microhaplotype Assay for Forensic DNA Analysis
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Ranran Zhang, Jiaming Xue, Mengyu Tan, Dezhi Chen, Yuanyuan Xiao, Guihong Liu, Yazi Zheng, Qiushuo Wu, Miao Liao, Meili Lv, Shengqiu Qu, and Weibo Liang
- Subjects
microhaplotype ,massively parallel sequencing (MPS) ,Southwest Chinese Han ,forensic DNA analysis ,degraded mixtures ,noninvasive prenatal paternity testing (NIPPT) ,Genetics ,Genetics (clinical) - Abstract
Microhaplotypes (MHs) are widely accepted as powerful markers in forensic studies. They have the advantage of both short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs), with no stutter and amplification bias, short fragments and amplicons, low mutation and recombination rates, and high polymorphisms. In this study, we constructed a panel of 50 MHs that are distributed on 21 chromosomes and analyzed them using the Multiseq multiple polymerase chain reaction (multi-PCR) targeted capture sequencing protocol based on the massively parallel sequencing (MPS) platform. The sizes of markers and amplicons ranged between 11–81 bp and 123–198 bp, respectively. The sensitivity was 0.25 ng, and the calling results were consistent with Sanger sequencing and the Integrative Genomics Viewer (IGV). It showed measurable polymorphism among sequenced 137 Southwest Chinese Han individuals. No significant deviations in the Hardy–Weinberg equilibrium (HWE) and linkage disequilibrium (LD) were found at all MHs after Bonferroni correction. Furthermore, the specificity was 1:40 for simulated two-person mixtures, and the detection rates of highly degraded single samples and mixtures were 100% and 93–100%, respectively. Moreover, animal DNA testing was incomplete and low depth. Overall, our MPS-based 50-plex MH panel is a powerful forensic tool that provides a strong supplement and enhancement for some existing panels.
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- 2023
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50. Set of 15 SNP-SNP Markers for Detection of Unbalanced Degraded DNA Mixtures and Noninvasive Prenatal Paternity Testing
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Rangran Zhang, Yu Tan, Li Wang, Hui Jian, Jing Zhu, Yuanyuan Xiao, Mengyu Tan, Jiaming Xue, Fan Yang, and Weibo Liang
- Subjects
amplification-refractory mutation system PCR ,SNaPshot ,SNP-SNP microhaplotype ,unbalanced and degraded mixture ,cell-free fetal DNA ,noninvasive prenatal paternity testing ,Genetics ,Molecular Medicine ,QH426-470 ,Genetics (clinical) - Abstract
Unbalanced and degraded mixtures (UDM) are very common in forensic DNA analysis. For example, DNA signals from criminal suspects are masked by a large amount of DNA from victims, or cell-free fetal DNA (cffDNA) in maternal plasma is masked by a high background of maternal DNA. Currently, detecting minor DNA in these mixtures is complex and challenging. We developed a new set of SNP-SNP microhaplotypes with short amplicons, and we successfully genotyped them using the new method of amplification-refractory mutation system PCR (ARMS-PCR) combined with SNaPshot technology based on a capillary electrophoresis (CE) platform. This panel reflects a high polymorphism in the Southwest Chinese Han population and thus has excellent potential for mixture studies. We evaluated the feasibility of this panel for UDM detection and noninvasive prenatal paternity testing (NIPPT). Fifteen SNP-SNPs detected minor DNA of homemade DNA mixtures, with a sensitivity of 0.025–0.05 ng and a specificity of 1:1,000. In addition, the panel successfully genotyped degraded DNA from single and mixed samples. Finally, 15 SNP-SNPs were applied to 26 trios. All samples displayed positive results with at least one marker to detect cffDNA. Besides, all fetal alleles in maternal plasma were confirmed by genotyping fetal genomic DNA from amniocentesis and paternal genomic DNA from peripheral blood. The results indicated that the SNP-SNP strategy based on the CE platform was useful for UDM detection and NIPPT.
- Published
- 2022
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