1. A multiplex PCR system for detection of wide compatibility allele S5-n and erect panicle allele dep1 in rice
- Author
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Jun Zhou Li, Yong Run Cao, Meng Qi Li, Wen Li Zhao, Hong Zheng Sun, and Quan Zhi Zhao
- Subjects
Functional marker ,S5-n ,DEP1 ,multiplex PCR ,Plant culture ,SB1-1110 ,Biotechnology ,TP248.13-248.65 - Abstract
Wide compatibility and erect panicles are important traits for heterosis and ideal plant type breeding in rice and accordingly are targets for rice yield improvement. In this study, a multiplex PCR system based on functional markers was developed to simultaneously identify genotypes of the wide compatibility allele S5-n and the erect panicle allele dep1. Forty-nine rice varieties in the Huang-Huai-Hai region of China were identified using this system. Thirty-three varieties contained the erect panicle allele dep1 and two varieties contained the wide compatibility allele S5-n. The frequency of dep1 was obviously higher than that of S5-n. The multiplex PCR method was also tested using an F2 segregating population and was found to be simple, efficient, and reliable. It will be useful in marker-assisted selection based on the wide compatibility allele S5-n and erect panicle allele dep1 to breed super rice varieties using indica and japonica heterosis.
- Published
- 2017
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