29 results on '"Wieczerzak E"'
Search Results
2. The Efficient Synthesis of Azaamino Acids.
- Author
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Wieczerzak, E., primary, Kozlowska, J., additional, Lankiewicz, L., additional, and Grzonka, Z., additional
- Published
- 2003
- Full Text
- View/download PDF
3. Structural studies of cysteine proteases and their inhibitors.
- Author
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Grzonka, Z, primary, Jankowska, E, additional, Kasprzykowski, F, additional, Kasprzykowska, R, additional, Lankiewicz, L, additional, Wiczk, W, additional, Wieczerzak, E, additional, Ciarkowski, J, additional, Drabik, P, additional, Janowski, R, additional, Kozak, M, additional, Jaskólski, M, additional, and Grubb, A, additional
- Published
- 2001
- Full Text
- View/download PDF
4. Azapeptides Structurally Based upon Inhibitory Sites of Cystatins as Potent and Selective Inhibitors of Cysteine Proteases
- Author
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Wieczerzak, E., Drabik, P., Lankiewicz, L., Oldziej, S., Grzonka, Z., Abrahamson, M., Grubb, A., and Bromme, D.
- Abstract
A series of azapeptides as potential inhibitors of cysteine proteases were synthesized. Their structures, based on the binding center of cystatins, contain an azaglycine residue (Agly) in place of the evolutionarily conserved glycine residue in the N-terminal part of the enzyme binding region of cystatins. Incorporation of Agly should lead to deactivation of the acyl−enzyme complex formed against nucleophilic attack by water molecules in the final step of peptide bond hydrolysis. The majority of synthesized azapeptides shows high inhibitory potency toward the investigated cysteine proteases, papain, cathepsin B, and cathepsin K. One of them, Z-Arg-Leu-Val-Agly-Ile-Val-OMe (compound
17 ), which contains in its sequence the amino acid residues from the N-terminal binding segment as well as the hydrophobic residues from the first binding loop of human cystatin C, proved to be a highly potent and selective inhibitor of cathepsin B. It inhibits cathepsin B with a Ki value of 0.088 nM. To investigate the influence of the structure of compound17 for its inhibitory properties, we determined its conformation by means of NMR studies and theoretical calculations. The Z-Arg-Leu-Val-Agly fragment, covalently linked to Cys29 of cathepsin B, was also developed and modeled, in the catalytic pocket of the enzyme, through a molecular dynamics approach, to analyze ligand−protein interactions in detail. Analysis of the simulation trajectories generated using the AMBER force field provided us with atomic-level understanding of the conformational variability of this inhibitor, which is discussed in the context of other experimental and theoretical data.- Published
- 2002
- Full Text
- View/download PDF
5. Cyanopeptolins with trypsin and chymotrypsin inhibitory activity from the cyanobacterium nostoc edaphicum CCNP1411.
- Author
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Mazur-Marzec, H. (Hanna), Fidor, A. (Anna), Cegłowska, M. (Marta), Wieczerzak, E. (Ewa), Kropidłowska, M. (Magdalena), Goua, M. (Marie), Macaskill, J. (Jenny), Edwards, C. (Christine), Mazur-Marzec, H. (Hanna), Fidor, A. (Anna), Cegłowska, M. (Marta), Wieczerzak, E. (Ewa), Kropidłowska, M. (Magdalena), Goua, M. (Marie), Macaskill, J. (Jenny), and Edwards, C. (Christine)
- Abstract
Cyanopeptolins (CPs) are one of the most frequently occurring cyanobacterial peptides, many of which are inhibitors of serine proteases. Some CP variants are also acutely toxic to aquatic organisms, especially small crustaceans. In this study, thirteen CPs, including twelve new variants, were detected in the cyanobacterium Nostoc edaphicum CCNP1411 isolated from the Gulf of Gdańsk (southern Baltic Sea). Structural elucidation was performed by tandem mass spectrometry with verification by NMR for CP962 and CP985. Trypsin and chymotrypsin inhibition assays confirmed the significance of the residue adjacent to 3-amino-6-hydroxy-2-piperidone (Ahp) for the activity of the peptides. Arginine-containing CPs (CPs-Arg2) inhibited trypsin at low IC50 values (0.24–0.26 µM) and showed mild activity against chymotrypsin (IC50 3.1–3.8 µM), while tyrosine-containing CPs (CPs-Tyr2) were selectively and potently active against chymotrypsin (IC50 0.26 µM). No degradation of the peptides was observed during the enzyme assays. Neither of the CPs were active against thrombin, elastase or protein phosphatase 1. Two CPs (CP962 and CP985) had no cytotoxic effects on MCF-7 breast cancer cells. Strong and selective activity of the new cyanopeptolin variants makes them potential candidates for the development of drugs against metabolic disorders and other diseases.
6. Cyanopeptolins with trypsin and chymotrypsin inhibitory activity from the cyanobacterium nostoc edaphicum CCNP1411.
- Author
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Mazur-Marzec, H. (Hanna), Fidor, A. (Anna), Ceg?owska, M. (Marta), Wieczerzak, E. (Ewa), Kropid?owska, M. (Magdalena), Goua, M. (Marie), Macaskill, J. (Jenny), Edwards, C. (Christine), Mazur-Marzec, H. (Hanna), Fidor, A. (Anna), Ceg?owska, M. (Marta), Wieczerzak, E. (Ewa), Kropid?owska, M. (Magdalena), Goua, M. (Marie), Macaskill, J. (Jenny), and Edwards, C. (Christine)
- Abstract
Cyanopeptolins (CPs) are one of the most frequently occurring cyanobacterial peptides, many of which are inhibitors of serine proteases. Some CP variants are also acutely toxic to aquatic organisms, especially small crustaceans. In this study, thirteen CPs, including twelve new variants, were detected in the cyanobacterium Nostoc edaphicum CCNP1411 isolated from the Gulf of Gdańsk (southern Baltic Sea). Structural elucidation was performed by tandem mass spectrometry with verification by NMR for CP962 and CP985. Trypsin and chymotrypsin inhibition assays confirmed the significance of the residue adjacent to 3-amino-6-hydroxy-2-piperidone (Ahp) for the activity of the peptides. Arginine-containing CPs (CPs-Arg2) inhibited trypsin at low IC50 values (0.24–0.26 µM) and showed mild activity against chymotrypsin (IC50 3.1–3.8 µM), while tyrosine-containing CPs (CPs-Tyr2) were selectively and potently active against chymotrypsin (IC50 0.26 µM). No degradation of the peptides was observed during the enzyme assays. Neither of the CPs were active against thrombin, elastase or protein phosphatase 1. Two CPs (CP962 and CP985) had no cytotoxic effects on MCF-7 breast cancer cells. Strong and selective activity of the new cyanopeptolin variants makes them potential candidates for the development of drugs against metabolic disorders and other diseases.
7. Rpt5-Derived Analogs Stimulate Human Proteasome Activity in Cells and Degrade Proteins Forming Toxic Aggregates in Age-Related Diseases.
- Author
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Cekała K, Trepczyk K, Witkowska J, Jankowska E, and Wieczerzak E
- Subjects
- Humans, alpha-Synuclein metabolism, HEK293 Cells, Peptides pharmacology, Peptides chemistry, Peptides metabolism, Peptidomimetics pharmacology, Peptidomimetics chemistry, Protein Aggregates drug effects, Protein Aggregation, Pathological metabolism, Proteolysis drug effects, tau Proteins metabolism, Aging metabolism, Proteasome Endopeptidase Complex metabolism, Peptide Fragments pharmacology
- Abstract
Aging and age-related diseases are associated with a decline in the capacity of protein turnover. Intrinsically disordered proteins, as well as proteins misfolded and oxidatively damaged, prone to aggregation, are preferentially digested by the ubiquitin-independent proteasome system (UIPS), a major component of which is the 20S proteasome. Therefore, boosting 20S activity constitutes a promising strategy to counteract a decrease in total proteasome activity during aging. One way to enhance the proteolytic removal of unwanted proteins appears to be the use of peptide-based activators of the 20S. In this study, we synthesized a series of peptides and peptidomimetics based on the C-terminus of the Rpt5 subunit of the 19S regulatory particle. Some of them efficiently stimulated human 20S proteasome activity. The attachment of the cell-penetrating peptide TAT allowed them to penetrate the cell membrane and stimulate proteasome activity in HEK293T cells, which was demonstrated using a cell-permeable substrate of the proteasome, TAS3. Furthermore, the best activator enhanced the degradation of aggregation-prone α-synuclein and Tau-441. The obtained compounds may therefore have the potential to compensate for the unbalanced proteostasis found in aging and age-related diseases.
- Published
- 2024
- Full Text
- View/download PDF
8. Anti-SARS-CoV-2 activity of cyanopeptolins produced by Nostoc edaphicum CCNP1411.
- Author
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Konkel R, Milewska A, Do NDT, Barreto Duran E, Szczepanski A, Plewka J, Wieczerzak E, Iliakopoulou S, Kaloudis T, Jochmans D, Neyts J, Pyrc K, and Mazur-Marzec H
- Subjects
- Humans, SARS-CoV-2, Spike Glycoprotein, Coronavirus, COVID-19, Nostoc
- Abstract
Despite the advances in contemporary medicine and availability of numerous innovative therapies, effective treatment and prevention of SARS-CoV-2 infections pose a challenge. In the search for new anti-SARS-CoV-2 drug candidates, natural products are frequently explored. Here, fifteen cyanopeptolins (CPs) were isolated from the Baltic cyanobacterium Nostoc edaphicum and tested against SARS-CoV-2. Of these depsipeptides, the Arg-containing structural variants showed the strongest inhibition of the Delta SARS-CoV-2 infection in A549
ACE2/TMPRSS2 cells. The functional assays indicated a direct interaction of the Arg-containing CP978 with the virions. CP978 also induced a significant decline in virus replication in the primary human airway epithelial cells (HAE). Of the four tested SARS-CoV-2 variants, Wuhan, Alpha, Omicron and Delta, only Wuhan was not affected by CP978. Finally, the analyses with application of confocal microscopy and with the SARS-CoV-2 pseudoviruses showed that CP978-mediated inhibition of viral infection results from the direct binding of the cyanopeptolin with the coronaviral S protein. Considering the potency of viral inhibition and the mode of action of CP978, the significance of the peptide as antiviral drug candidate should be further explored., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2023
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9. Structural Diversity and Biological Activity of Cyanopeptolins Produced by Nostoc edaphicum CCNP1411.
- Author
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Konkel R, Cegłowska M, Szubert K, Wieczerzak E, Iliakopoulou S, Kaloudis T, and Mazur-Marzec H
- Subjects
- Peptides metabolism, Mass Spectrometry, Nostoc metabolism
- Abstract
Cyanopeptolins (CPs) are one of the most commonly occurring class of cyanobacterial nonribosomal peptides. For the majority of these compounds, protease inhibition has been reported. In the current work, the structural diversity of cyanopeptolins produced by Nostoc edaphicum CCNP1411 was explored. As a result, 93 CPs, including 79 new variants, were detected and structurally characterized based on their mass fragmentation spectra. CPs isolated in higher amounts were additionally characterized by NMR. To the best of our knowledge, this is the highest number of cyanopeptides found in one strain. The biological assays performed with the 34 isolated CPs confirmed the significance of the amino acid located between Thr and the unique 3-amino-6-hydroxy-2-piperidone (Ahp) on the activity of the compounds against serine protease and HeLa cancer cells.
- Published
- 2023
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10. Anabaenopeptins from Nostoc edaphicum CCNP1411.
- Author
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Konkel R, Grabski M, Cegłowska M, Wieczerzak E, Węgrzyn G, and Mazur-Marzec H
- Subjects
- Carboxypeptidases A metabolism, Serine Proteases metabolism, Nostoc genetics, Nostoc metabolism, Peptides, Cyclic chemistry, Peptides, Cyclic metabolism
- Abstract
Cyanobacteria of the Nostoc genus belong to the most prolific sources of bioactive metabolites. In our previous study on Nostoc edaphicum strain CCNP1411, the occurrence of cyanopeptolins and nostocyclopeptides was documented. In the current work, the production of anabaenopeptins (APs) by the strain was studied using genetic and chemical methods. Compatibility between the analysis of the apt gene cluster and the structure of the identified APs was found. Three of the APs, including two new variants, were isolated as pure compounds and tested against four serine proteases and carboxypeptidase A (CPA). The in vitro enzymatic assays showed a typical activity of this class of cyanopeptides, i.e., the most pronounced effects were observed in the case of CPA. The activity of the detected compounds against important metabolic enzymes confirms the pharmaceutical potential of anabaenopeptins.
- Published
- 2022
- Full Text
- View/download PDF
11. Peptidomimetics Based on C -Terminus of Blm10 Stimulate Human 20S Proteasome Activity and Promote Degradation of Proteins.
- Author
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Cekała K, Trepczyk K, Sowik D, Karpowicz P, Giełdoń A, Witkowska J, Giżyńska M, Jankowska E, and Wieczerzak E
- Subjects
- HEK293 Cells, Humans, Proteasome Endopeptidase Complex metabolism, Proteolysis, Neurodegenerative Diseases, Peptidomimetics pharmacology
- Abstract
Degradation of misfolded, redundant and oxidatively damaged proteins constitutes one of the cellular processes which are influenced by the 20S proteasome. However, its activity is generally thought to decrease with age which leads to the gradual accumulation of abnormal proteins in cells and their subsequent aggregation. Therefore, increasing proteasomal degradation constitutes a promising strategy to delay the onset of various age-related diseases, including neurodegenerative disorders. In this study we designed and obtained a series of peptidomimetic stimulators of 20S comprising in their sequences the C -terminal fragment of Blm10 activator. Some of the compounds were capable of enhancing the degradation of natively unfolded and oxidatively damaged proteins, such as α-synuclein and enolase, whose applicability as proteasome substrates was evaluated by microscale thermophoresis (MST). Furthermore, they increased the ChT-L activity of the proteasome in HEK293T cell extracts. Our studies indicate that the 20S proteasome-mediated protein substrates hydrolysis may be selectively increased by peptide-based stimulators acting in an allosteric manner. These compounds, after further optimization, may have the potential to counteract proteasome impairment in patients suffering from age-related diseases.
- Published
- 2022
- Full Text
- View/download PDF
12. Novel chalcone-derived pyrazoles as potential therapeutic agents for the treatment of non-small cell lung cancer.
- Author
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Maciejewska N, Olszewski M, Jurasz J, Serocki M, Dzierzynska M, Cekala K, Wieczerzak E, and Baginski M
- Subjects
- Apoptosis, Cell Line, Tumor, Cell Proliferation, Drug Screening Assays, Antitumor, Humans, Pyrazoles therapeutic use, Structure-Activity Relationship, Tubulin metabolism, Antineoplastic Agents therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, Chalcone pharmacology, Chalcones pharmacology, Lung Neoplasms drug therapy
- Abstract
Lung cancer is considered to account for approximately one-fifth of all malignant tumor-related deaths worldwide and is therefore one of the most lethal malignancies. Pyrazole scaffold possesses a wide range of biological and pharmacological activities, which play important roles in medicinal chemistry. The present study reports the synthesis and in vitro biological characterization of nine pyrazoles derived from chalcones as potential anticancer agents for non-small cell lung cancer A-549, H226, and H460 cell lines. Most of the compounds efficiently inhibited the growth of all the tested cancer cell lines at micromolar concentrations. One of the most active compounds (PCH-1) was further evaluated for its effect on cell cycle distribution, apoptosis, migration, epithelial-mesenchymal transition, and oxidative stress. Furthermore, studies on the mechanism of action revealed that PCH-1 disrupts microtubule assembly, leading to cancer cell death. Molecular modeling studies confirmed the potent interaction of PCH-1 with the vinblastine binding site on tubulin. Overall, this study provides novel opportunities to identify anticancer agents in the pyrazole series., (© 2022. The Author(s).)
- Published
- 2022
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13. Nostocyclopeptides as New Inhibitors of 20S Proteasome.
- Author
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Fidor A, Cekała K, Wieczerzak E, Cegłowska M, Kasprzykowski F, Edwards C, and Mazur-Marzec H
- Subjects
- Humans, Magnetic Resonance Spectroscopy, Nostoc chemistry, Peptides, Cyclic pharmacology, Proteasome Endopeptidase Complex metabolism, Proteasome Inhibitors pharmacology
- Abstract
Nostocyclopeptides (Ncps) are a small class of bioactive nonribosomal peptides produced solely by cyanobacteria of the genus Nostoc . In the current work, six Ncps were isolated from Nostoc edaphicum strain CCNP1411. The bioactivity of these compounds was tested in vitro against 20S proteasome, a proteolytic complex that plays an important role in maintaining cellular proteostasis. Dysfunction of the complex leads to many pathological disorders. The assays indicated selective activity of specific Ncp variants. For two linear peptide aldehydes, Ncp-A2-L and Ncp-E2-L, the inhibitory effects on chymotrypsin-like activity were revealed, while the cyclic variant, Ncp-A2, inactivated the trypsin-like site of this enzymatic complex. The aldehyde group was confirmed to be an important element of the chymotrypsin-like activity inhibitors. The nostocyclopeptides, as novel inhibitors of 20S proteasome, increased the number of natural products that can be considered potential regulators of cellular processes.
- Published
- 2021
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14. Antibacterial, Antifungal and Anticancer Activities of Compounds Produced by Newly Isolated Streptomyces Strains from the Szczelina Chochołowska Cave (Tatra Mountains, Poland).
- Author
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Jaroszewicz W, Bielańska P, Lubomska D, Kosznik-Kwaśnicka K, Golec P, Grabowski Ł, Wieczerzak E, Dróżdż W, Gaffke L, Pierzynowska K, Węgrzyn G, and Węgrzyn A
- Abstract
Resistance of bacteria, fungi and cancer cells to antibiotics and other drugs is recognized as one of the major problems in current medicine. Therefore, a search for new biologically active compounds able to either kill pathogenic cells or inhibit their growth is mandatory. Hard-to-reach habitats appear to be unexplored sources of microorganisms producing previously unknown antibiotics and other molecules revealing potentially therapeutic properties. Caves belong to such habitats, and Actinobacteria are a predominant group of microorganisms occurring there. This group of bacteria are known for production of many antibiotics and other bioactive compounds. Interestingly, it was demonstrated previously that infection with bacteriophages might enhance production of antibiotics by them. Here, we describe a series of newly isolated strains of Actinobacteria that were found in caves from the Tatra Mountains (Poland). Phage induction tests indicated that some of them may bear active prophages able to produce virions upon treatment with mitomycin C or UV irradiation. Among all the examined bacteria, two newly isolated Streptomyces sp. strains were further characterized to demonstrate their ability to inhibit the growth of pathogenic bacteria (strains of Staphylococcus aureus, Salmonella enterica, Enterococcus sp., Escherichia coli, and Pseudomonas aeruginosa ) and fungi (different species and strains from the genus Candida ). Moreover, extracts from these Streptomyces strains reduced viability of the breast-cancer cell line T47D. Chemical analyses of these extracts indicated the presence of isomers of dichloranthrabenzoxocinone and 4,10- or 10,12-dichloro-3-O-methylanthrabenzoxocinone, which are putative antimicrobial compounds. Moreover, various previously unknown (unclassified) molecules were also detected using liquid chromatography-mass spectrometry, suggesting that tested Streptomyces strains may synthesize a battery of bioactive compounds with antibacterial, antifungal, and anticancer activities. These results indicate that further studies on the newly isolated Actinobacteria might be a promising approach to develop novel antibacterial, antifungal, and/or anticancer drugs.
- Published
- 2021
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15. Proteasome Composition and Activity Changes in Cultured Fibroblasts Derived From Mucopolysaccharidoses Patients and Their Modulation by Genistein.
- Author
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Pierzynowska K, Gaffke L, Jankowska E, Rintz E, Witkowska J, Wieczerzak E, Podlacha M, and Węgrzyn G
- Abstract
In this study, we have asked whether proteasome composition and function are affected in cells derived from patients suffering from all types of mucopolysaccharidosis (MPS), an inherited metabolic disease caused by accumulation of undegraded glycosaminoglycans (GAGs). Moreover, we have tested if genistein, a small molecule proposed previously as a potential therapeutic agent in MPS, can modulate proteasomes, which might shed a new light on the molecular mechanisms of action of this isoflavone as a potential drug for macromolecule storage diseases. Significant changes in expression of various proteasome-linked genes have been detected during transcriptomic (RNA-seq) analyses in vast majority of MPS types. These results were corroborated by demonstration of increased proteasomal activities in MPS cells. However, GAGs were not able to stimulate the 26S proteasome in vitro , suggesting that the observed activation in cells is indirect rather than arising from direct GAG-proteasome interactions. Genistein significantly reduced proteasomal activities in fibroblasts derived from patients suffering from all MPS types, while its effects on in vitro 26S proteasome activity were negligible. Unexpectedly, levels of many proteasomal subunits were increased in genistein-treated MPS cells. On the other hand, this ostensible discrepancy between results of experiments designed for estimation of effects of genistein on proteasome activities and abundance of proteasomal subunits can be explained by demonstration that in the presence of this isoflavone, levels of ubiquitinated proteins were decreased. The genistein-mediated reduction of proteasomal activities might have beneficial effects in cells of MPS patients due to potential increasing of residual activities of defective lysosomal enzymes which would otherwise be subjected to efficient ubiquitination and proteasomal degradation as misfolded proteins. These results indicate another activity of genistein (apart from previously demonstrated reduction of GAG synthesis efficiency, stimulation of lysosomal biogenesis, and activation of the autophagy process) which can be beneficial in the use of this small molecule in treatment of MPS., (Copyright © 2020 Pierzynowska, Gaffke, Jankowska, Rintz, Witkowska, Wieczerzak, Podlacha and Węgrzyn.)
- Published
- 2020
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16. Eighteen New Aeruginosamide Variants Produced by the Baltic Cyanobacterium Limnoraphis CCNP1324.
- Author
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Cegłowska M, Szubert K, Wieczerzak E, Kosakowska A, and Mazur-Marzec H
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents isolation & purification, Antineoplastic Agents pharmacology, Breast Neoplasms pathology, Cell Line, Tumor, Cell Survival drug effects, Female, Humans, Molecular Structure, Peptides, Cyclic chemistry, Peptides, Cyclic isolation & purification, Seawater microbiology, Structure-Activity Relationship, Water Microbiology, Breast Neoplasms drug therapy, Cyanobacteria metabolism, Peptides, Cyclic pharmacology
- Abstract
Cyanobactins are a large family of ribosomally synthesized and post-translationally modified cyanopeptides (RiPPs). Thus far, over a hundred cyanobactins have been detected in different free-living and symbiotic cyanobacteria. The majority of these peptides have a cyclic structure. The occurrence of linear cyanobactins, aeruginosamides and virenamide, has been reported sporadically and in few cyanobacterial taxa. In the current work, the production of cyanobactins by Limnoraphis sp. CCNP1324, isolated from the brackish water Baltic Sea, has been studied for the first time. In the strain, eighteen new aeruginosamide (AEG) variants have been detected. These compounds are characterized by the presence of prenyl and thiazole groups. A common element of AEGs produced by Limnoraphis sp. CCNP1324 is the sequence of the three C-terminal residues containing proline, pyrrolidine and methyl ester of thiazolidyne-4-carboxylic acid (Pro-Pyr-TzlCOOMe) or thiazolidyne-4-carboxylic acid (Pro-Pyr-TzlCOOH). The aeruginosamides with methylhomotyrosine (MeHTyr
1 ) and with the unidentified N -terminal amino acids showed strong cytotoxic activity against human breast cancer cells (T47D).- Published
- 2020
- Full Text
- View/download PDF
17. Novel parameter describing restriction endonucleases: Secondary-Cognate-Specificity and chemical stimulation of TsoI leading to substrate specificity change.
- Author
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Zebrowska J, Jezewska-Frackowiak J, Wieczerzak E, Kasprzykowski F, Zylicz-Stachula A, and Skowron PM
- Subjects
- DNA Cleavage, DNA Fragmentation, Dimethyl Sulfoxide chemistry, Enzyme Activation, Oligonucleotides chemistry, S-Adenosylhomocysteine analogs & derivatives, S-Adenosylhomocysteine chemistry, Substrate Specificity, Thermus enzymology, Bacterial Proteins chemistry, Bacterial Proteins metabolism, Deoxyribonucleases, Type II Site-Specific chemistry, Deoxyribonucleases, Type II Site-Specific metabolism
- Abstract
Over 470 prototype Type II restriction endonucleases (REases) are currently known. Most recognise specific DNA sequences 4-8 bp long, with very few exceptions cleaving DNA more frequently. TsoI is a thermostable Type IIC enzyme that recognises the DNA sequence TARCCA (R = A or G) and cleaves downstream at N11/N9. The enzyme exhibits extensive top-strand nicking of the supercoiled single-site DNA substrate. The second DNA strand of such substrate is specifically cleaved only in the presence of duplex oligonucleotides containing a cognate site. We have previously shown that some Type IIC/IIG/IIS enzymes from the Thermus-family exhibit 'affinity star' activity, which can be induced by the S-adenosyl-L-methionine (SAM) cofactor analogue-sinefungin (SIN). Here, we define a novel type of inherently built-in 'star' activity, exemplified by TsoI. The TsoI 'star' activity cannot be described under the definition of the classic 'star' activity as it is independent of the reaction conditions used and cannot be separated from the cognate specificity. Therefore, we define this phenomenon as Secondary-Cognate-Specificity (SCS). The TsoI SCS comprises several degenerated variants of the cognate site. Although the efficiency of TsoI SCS cleavage is lower in comparison to the cognate TsoI recognition sequence, it can be stimulated by S-adenosyl-L-cysteine (SAC). We present a new route for the chemical synthesis of SAC. The TsoI/SAC REase may serve as a novel tool for DNA manipulation.
- Published
- 2019
- Full Text
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18. Cyanopeptolins with Trypsin and Chymotrypsin Inhibitory Activity from the Cyanobacterium Nostoc edaphicum CCNP1411.
- Author
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Mazur-Marzec H, Fidor A, Cegłowska M, Wieczerzak E, Kropidłowska M, Goua M, Macaskill J, and Edwards C
- Subjects
- Cell Line, Tumor, Humans, Inhibitory Concentration 50, MCF-7 Cells, Pancreatic Elastase metabolism, Protein Phosphatase 1 metabolism, Tandem Mass Spectrometry methods, Thrombin metabolism, Chymotrypsin antagonists & inhibitors, Cyanobacteria metabolism, Nostoc metabolism, Peptides, Cyclic pharmacology, Trypsin metabolism, Trypsin Inhibitors pharmacology
- Abstract
Cyanopeptolins (CPs) are one of the most frequently occurring cyanobacterial peptides, many of which are inhibitors of serine proteases. Some CP variants are also acutely toxic to aquatic organisms, especially small crustaceans. In this study, thirteen CPs, including twelve new variants, were detected in the cyanobacterium Nostoc edaphicum CCNP1411 isolated from the Gulf of Gdańsk (southern Baltic Sea). Structural elucidation was performed by tandem mass spectrometry with verification by NMR for CP962 and CP985. Trypsin and chymotrypsin inhibition assays confirmed the significance of the residue adjacent to 3-amino-6-hydroxy-2-piperidone (Ahp) for the activity of the peptides. Arginine-containing CPs (CPs-Arg²) inhibited trypsin at low IC
50 values (0.24⁻0.26 µM) and showed mild activity against chymotrypsin (IC50 3.1⁻3.8 µM), while tyrosine-containing CPs (CPs-Tyr²) were selectively and potently active against chymotrypsin (IC50 0.26 µM). No degradation of the peptides was observed during the enzyme assays. Neither of the CPs were active against thrombin, elastase or protein phosphatase 1. Two CPs (CP962 and CP985) had no cytotoxic effects on MCF-7 breast cancer cells. Strong and selective activity of the new cyanopeptolin variants makes them potential candidates for the development of drugs against metabolic disorders and other diseases.- Published
- 2018
- Full Text
- View/download PDF
19. Differential effects of various soy isoflavone dietary supplements (nutraceuticals) on bacterial growth and human fibroblast viability.
- Author
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Pierzynowska K, Rzeszótko A, Blendowska A, Wieczerzak E, Rodziewicz-Motowidło S, Piotrowska E, and Węgrzyn G
- Subjects
- Bacteria growth & development, Cell Survival drug effects, Genistein pharmacology, Humans, Plant Extracts pharmacology, Glycine max chemistry, Bacteria drug effects, Dietary Supplements, Fibroblasts drug effects, Isoflavones pharmacology
- Abstract
Flavonoids, polyphenolic compounds present in many food products, affect growth of different bacterial species when tested as purified or synthetic substances. They can also influence gene expression in human cells, like fibroblasts. Here, we asked if soy isoflavone extracts, commonly used in many products sold as anti-menopausal dietary supplements, influence bacterial growth similarly to a synthetic isoflavone, genistein. Four commercially available products were tested in amounts corresponding to genistein concentrations causing inhibition of growth of Vibrio harveyi (a model bacterium sensitive to this isoflavone) and Escherichia coli (a model bacterium resistant to genistein). Differential effects of various extracts on V. harveyi and E. coli growth, from stimulation, to no changes, to inhibition, were observed. Moreover, contrary to genistein, the tested extracts caused a decrease (to different extent) in viability of human dermal fibroblasts. These results indicate that effects of various soy isoflavone extracts on bacterial growth and viability of human cells are different, despite similar declared composition of the commercially available products.
- Published
- 2018
- Full Text
- View/download PDF
20. Designing peptidic inhibitors of serum amyloid A aggregation process.
- Author
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Sosnowska M, Skibiszewska S, Kamińska E, Wieczerzak E, and Jankowska E
- Subjects
- Amino Acid Sequence, Amyloid beta-Peptides chemical synthesis, Humans, Protein Aggregates, Solutions, Spectroscopy, Fourier Transform Infrared, Amyloid beta-Peptides chemistry, Protein Aggregation, Pathological prevention & control, Serum Amyloid A Protein antagonists & inhibitors
- Abstract
Amyloid A amyloidosis is a life-threatening complication of a wide range of chronic inflammatory, infectious and neoplastic diseases, and the most common form of systemic amyloidosis worldwide. It is characterized by extracellular tissue deposition of fibrils that are composed of fragments of serum amyloid A protein (SAA), a major acute-phase reactant protein, produced predominantly by hepatocytes. Currently, there are no approved therapeutic agents directed against the formation of fibrillar SAA assemblies. We attempted to develop peptidic inhibitors based on their similarity and complementarity to the regions critical for SAA self-association, which they should interact with and block their assembly into amyloid fibrils. Inh1 and inh4 which are comprised of the residues from the amyloidogenic region of SAA1.1 protein and Aβ peptide, respectively, were found by us as capable to significantly suppress aggregation of the SAA1-12 peptide. It was chosen as an aggregation model that mimicks the amyloidogenic nucleus of SAA protein. We suppose that aromatic interactions may be responsible for inhibitory activity of both compounds. We also recognized that aromatic residues are involved in self-association of SAA1-12.
- Published
- 2016
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21. Toward very potent, non-covalent organophosphonate inhibitors of cathepsin C and related enzymes by 2-amino-1-hydroxy-alkanephosphonates dipeptides.
- Author
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Drąg M, Wieczerzak E, Pawełczak M, Berlicki Ł, Grzonka Z, and Kafarski P
- Subjects
- Amines chemistry, Amines pharmacology, Dipeptides chemistry, Enzyme Activation drug effects, Humans, Hydroxy Acids chemistry, Hydroxy Acids pharmacology, Inhibitory Concentration 50, Models, Molecular, Molecular Mimicry, Organophosphates chemistry, Cathepsin C antagonists & inhibitors, Dipeptides pharmacology, Enzyme Inhibitors pharmacology, Organophosphates pharmacology
- Abstract
Cathepsins play an important role in several human disorders and therefore the design and synthesis of their inhibitors attracts considerable interest in current medicinal chemistry approaches. Due to the presence of a strong sulphydryl nucleophile in the active center of the cysteine type cathepsins, most strategies to date have yielded covalent inhibitors. Here we present a series of non-covalent β-amino-α-hydroxyalkanephosphonate dipeptidic inhibitors of cathepsin C, ranking amongst the best low-molecular weight inhibitors of this enzyme. Their binding modes determined by molecular modelling indicate that the hydroxymethyl fragment of the molecule, not the phosphonate moiety, acts as a transition state analogue of peptide bond hydrolysis. These dipeptide mimetics appear also to be potent inhibitors of other cysteine proteases such as papain, cathepsin B and cathepsin K, thus providing new leading structures for these medicinally important enzymes., (Copyright © 2013 Elsevier Masson SAS. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
22. Neuropeptide pituitary adenylate cyclase-activating polypeptide (PACAP) slows down Alzheimer's disease-like pathology in amyloid precursor protein-transgenic mice.
- Author
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Rat D, Schmitt U, Tippmann F, Dewachter I, Theunis C, Wieczerzak E, Postina R, van Leuven F, Fahrenholz F, and Kojro E
- Subjects
- Administration, Intranasal, Alzheimer Disease genetics, Alzheimer Disease metabolism, Amyloid beta-Protein Precursor genetics, Animals, Brain metabolism, Gene Expression Regulation drug effects, Mice, Mice, Transgenic, Neprilysin genetics, Neprilysin metabolism, Pituitary Adenylate Cyclase-Activating Polypeptide administration & dosage, Pituitary Adenylate Cyclase-Activating Polypeptide metabolism, Somatostatin genetics, Somatostatin metabolism, Alzheimer Disease pathology, Amyloid beta-Protein Precursor metabolism, Pituitary Adenylate Cyclase-Activating Polypeptide pharmacology
- Abstract
Pituitary adenylate cyclase-activating polypeptide (PACAP) has neuroprotective and neurotrophic properties and is a potent α-secretase activator. As PACAP peptides and their specific receptor PAC1 are localized in central nervous system areas affected by Alzheimer's disease (AD), this study aims to examine the role of the natural peptide PACAP as a valuable approach in AD therapy. We investigated the effect of PACAP in the brain of an AD transgenic mouse model. The long-term intranasal daily PACAP application stimulated the nonamyloidogenic processing of amyloid precursor protein (APP) and increased expression of the brain-derived neurotrophic factor and of the antiapoptotic Bcl-2 protein. In addition, it caused a strong reduction of the amyloid β-peptide (Aβ) transporter receptor for advanced glycation end products (RAGE) mRNA level. PACAP, by activation of the somatostatin-neprilysin cascade, also enhanced expression of the Aβ-degrading enzyme neprilysin in the mouse brain. Furthermore, daily PAC1-receptor activation via PACAP resulted in an increased mRNA level of both the PAC1 receptor and its ligand PACAP. Our behavioral studies showed that long-term PACAP treatment of APP[V717I]-transgenic mice improved cognitive function in animals. Thus, nasal application of PACAP was effective, and our results indicate that PACAP could be of therapeutic value in treating AD.
- Published
- 2011
- Full Text
- View/download PDF
23. Was the serine protease cathepsin G discovered by S. G. Hedin in 1903 in bovine spleen?
- Author
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Palesch D, Sieńczyk M, Oleksyszyn J, Reich M, Wieczerzak E, Boehm BO, and Burster T
- Subjects
- Animals, Cathepsin G history, Cattle, Cysteine Proteases isolation & purification, Cysteine Proteases metabolism, History, 20th Century, Mice, Rats, Cathepsin G isolation & purification, Cathepsin G metabolism, Spleen enzymology
- Abstract
In the beginning of the 20th century, enzymes with proteolytic activity were classified as peptidases, Erepsin, and proteases. Among these, pepsin, trypsin, and autolytic enzymes were of the protease class. Spleen-derived proteases were poorly characterized until Sven Gustaf Hedin performed several digestion experiments with bovine spleen. He incubated minced bovine spleen under acidic or neutral conditions and characterized two active proteases; the results were published in 1903. The first protease was named α-protease and was active under neutral conditions. The second was named β-protease and was active under acidic conditions. We replicated Hedin's experiments according to his methods and found, by using activity-based probes to visualize proteases, that the historical α-protease is the present-day serine protease cathepsin G (CatG), which is known to be important in several immune processes, including antigen processing, chemotaxis, and activation of surface receptors. The β-protease, however, comprised different proteases including CatX, B, S, and D. We suggest that Hedin described CatG activity in bovine spleen over 100 years ago.
- Published
- 2011
24. Specific cathepsin B inhibitor is cell-permeable and activates presentation of TTC in primary human dendritic cells.
- Author
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Reich M, Wieczerzak E, Jankowska E, Palesch D, Boehm BO, and Burster T
- Subjects
- Antigen Presentation drug effects, Cathepsin B metabolism, Cysteine Proteinase Inhibitors chemistry, Cysteine Proteinase Inhibitors pharmacology, Dendritic Cells drug effects, Dendritic Cells enzymology, Dipeptides pharmacology, Humans, Interferon-gamma agonists, Interferon-gamma biosynthesis, Interferon-gamma immunology, Interleukin-17 agonists, Interleukin-17 biosynthesis, Interleukin-17 immunology, Oligopeptides chemistry, Oligopeptides pharmacology, T-Lymphocytes drug effects, T-Lymphocytes immunology, T-Lymphocytes metabolism, Tumor Necrosis Factor-alpha agonists, Tumor Necrosis Factor-alpha biosynthesis, Tumor Necrosis Factor-alpha immunology, Cathepsin B antagonists & inhibitors, Cell Membrane Permeability, Cysteine Proteinase Inhibitors pharmacokinetics, Dendritic Cells immunology, Oligopeptides pharmacokinetics, Peptide Fragments immunology, Tetanus Toxin immunology
- Abstract
Cathepsins of the cysteine, aspartyl, and serine classes are involved in antigen processing in the class II major histocompatibility complex (MHC) loading compartment. Investigation of these proteases in living cells is difficult to perform due to the lack of highly specific cell-permeable inhibitors. Recently, a highly selective cathepsin B (CatB) inhibitor, Z-Arg-Leu-Arg-alpha-aza-glycyl-Ile-Val-OMe (ZRLR), was described. We found that ZRLR is cell-permeable and specifically inhibits CatB, in contrast to the CatB inhibitor, CA074-OMe, which blocks cysteine cathepsins in addition to CatB in primary human antigen-presenting cells (APC). Furthermore, we compared both CA074-OMe and ZRLR in the ability to alter tetanus toxin C-fragment (TTC) presentation to T cells by different APC. As a result, we found enhanced presentation of TTC in the presence of ZRLR, as determined by detection of pro-inflammatory cytokines. We conclude that ZRLR is a specific, cell-permeable CatB inhibitor which can be used for antigen presenting studies in situ.
- Published
- 2009
- Full Text
- View/download PDF
25. Monitoring of native chemical ligation by surface plasmon resonance.
- Author
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Wieczerzak E, Hame R Jr, Chabot V, Aimez V, Charette PG, Grandbois M, and Escher E
- Subjects
- Amino Acid Sequence, Peptides chemistry, Surface Plasmon Resonance methods
- Published
- 2009
- Full Text
- View/download PDF
26. NMR studies of the Zn2+ interactions with rat and human beta-amyloid (1-28) peptides in water-micelle environment.
- Author
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Gaggelli E, Janicka-Klos A, Jankowska E, Kozlowski H, Migliorini C, Molteni E, Valensin D, Valensin G, and Wieczerzak E
- Subjects
- Amino Acid Sequence, Animals, Cations, Divalent chemistry, Computer Simulation, Humans, Models, Molecular, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Protein Structure, Tertiary, Protons, Rats, Amyloid beta-Peptides chemistry, Micelles, Peptide Fragments chemistry, Water chemistry, Zinc chemistry
- Abstract
Alzheimer's disease is a fatal neurodegenerative disorder involving the abnormal accumulation and deposition of peptides (amyloid-beta, Abeta) derived from the amyloid precursor protein. Here, we present the structure and the Zn2+ binding sites of human and rat Abeta(1-28) fragments in water/sodium dodecyl sulfate (SDS) micelles by using 1H NMR spectroscopy. The chemical shift variations measured after Zn2+ addition at T>310 K allowed us to assign the binding donor atoms in both rat and human zinc complexes. The Asp-1 amine, His-6 Ndelta, Glu-11 COO-, and His-13 Nepsilon of rat Abeta28 all enter the metal coordination sphere, while His-6 Ndelta, His-13, His-14 Nepsilon, Asp-1 amine, and/or Glu-11 COO- are all bound to Zn2+ in the case of human Abeta28. Finally, a comparison between the rat and human binding abilities was discussed.
- Published
- 2008
- Full Text
- View/download PDF
27. Monitoring of native chemical ligation on solid substrate by surface plasmon resonance.
- Author
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Wieczerzak E, Hamel R Jr, Chabot V, Aimez V, Grandbois M, Charette PG, and Escher E
- Subjects
- Amino Acid Sequence, Bradykinin chemical synthesis, Bradykinin chemistry, Esters, Kinetics, Substrate Specificity, Peptides chemical synthesis, Surface Plasmon Resonance instrumentation, Surface Plasmon Resonance methods
- Abstract
During the last years native chemical ligation (NCL) gained in popularity as a method allowing the chemical synthesis of large peptides and entire proteins. NCL is particularly well-suited for chemoselective and nondenaturing attachment of biomolecules on solid substrates. In the present work, we show the feasibility of monitoring of peptide synthesis, NCL and its catalysis on silicon oxide modified gold surfaces by surface plasmon resonance (SPR). NCL of a model peptide-bradykinin thioester-was carried out and monitored with a custom-built SPR apparatus. Solid-phase produced bradykinin thioester was ligated to the surface in the presence of variable concentrations of 4-mercaptophenylacetic acid as transthioesterification catalyst. At catalyst concentration of 48 mM and above, the NCL reaction was maximal and identical to the reaction of the purified peptide-mercaptophenylacetic acid thioester. SPR curves indicate typical first-order kinetics with t(1/2) of 81 s for this aryl thioester, but of 104 min for the primary alkyl thioester., ((c) 2007 Wiley Periodicals, Inc.)
- Published
- 2008
- Full Text
- View/download PDF
28. An enormously active and selective azapeptide inhibitor of cathepsin B.
- Author
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Wieczerzak E, Rodziewicz-Motowidło S, Jankowska E, Giełdoń A, and Ciarkowski J
- Subjects
- Binding Sites, Cathepsin B chemistry, Cathepsin K, Cathepsins antagonists & inhibitors, Cathepsins chemistry, Cysteine Proteinase Inhibitors chemical synthesis, Humans, Hydrazines chemical synthesis, Nuclear Magnetic Resonance, Biomolecular, Oligopeptides chemical synthesis, Protein Structure, Secondary, Structure-Activity Relationship, Cathepsin B antagonists & inhibitors, Cysteine Proteinase Inhibitors chemistry, Hydrazines chemistry, Oligopeptides chemistry
- Abstract
The peptidomimetic Z-Arg-Leu-Arg-Agly-Ile-Val-OMe (where Agly means alpha-aza-glycyl, -NHNHCO-) is the strongest (K(i) = 480 pM) and the most selective inhibitor of cathepsin B to date, being approximately 2310 times as active to cathepsin B as to cathepsin K. In this paper we introduce the peptide and seek to rationalize its structure-activity relationships using molecular dynamics (MD) and NMR. It is shown that the -Agly-moiety restrains the peptide backbone to a bent shape, contrary to its parent peptide (with Gly in position 4), having its backbone extended and flexible. This fold is maintained in the plug covalently bound to the cathepsin B Cys29, in compliance with similar bends already observed in two other azapeptides attached to the active sites of cathepsin B. The MD simulation of the Z-Arg-Leu-Arg-Agly approximately cathepsin B complex suggests that, contrary to other potent inhibitors of cathepsin B, the current double Arg(1)/Arg(3) inhibitor, while maintaining the fold is able to form a unique ion cluster involving both Arg residues on the inhibitor part and two acidic Glu171 and Glu245 on the cathepsin B part, thus enhancing the affinity and subsequently the inhibiting power and selectivity of Z-Arg-Leu-Arg-Agly-Ile-Val-OMe to the observed extreme extent., (Copyright (c) 2007 European Peptide Society and John Wiley & Sons, Ltd.)
- Published
- 2007
- Full Text
- View/download PDF
29. A novel nucleotide found in human erythrocytes, 4-pyridone-3-carboxamide-1-beta-D-ribonucleoside triphosphate.
- Author
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Slominska EM, Carrey EA, Foks H, Orlewska C, Wieczerzak E, Sowinski P, Yacoub MH, Marinaki AM, Simmonds HA, and Smolenski RT
- Subjects
- Adenosine Kinase antagonists & inhibitors, Adenosine Triphosphate blood, Adenosine Triphosphate metabolism, Case-Control Studies, Chromatography, High Pressure Liquid, Creatinine blood, Humans, Kidney Failure, Chronic blood, Kinetics, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Nucleosides blood, Nucleotides biosynthesis, Nucleotides chemistry, Spectrum Analysis, Uremia metabolism, Erythrocytes metabolism, Niacinamide analogs & derivatives, Niacinamide blood, Nucleotides blood
- Abstract
We report the identification of a hitherto unknown nucleotide that is present in micromolar concentrations in the erythrocytes of healthy subjects and accumulates at levels comparable with the ATP concentration in erythrocytes of patients with chronic renal failure. The unknown nucleotide was isolated and identified by liquid chromatography with UV and tandem mass detection, (1)H nuclear magnetic resonance and infrared spectroscopy as 4-pyridone-3-carboxamide-1-beta-D-ribonucleoside triphosphate (4PYTP), a structure indicating association with metabolism of the oxidized nicotinamide compounds. Subsequently, we demonstrated formation of 4PYTP in intact human erythrocytes during incubation with the chemically synthesized nucleoside precursor 4-pyridone-3-carboxamide-1-beta-D-ribonucleoside (4PYR). We noted preferential accumulation of monophosphate of 4PYR (4PYMP) over 4PYTP as well as a decrease in erythrocyte ATP concentration during incubation with 4PYR. Both the 4PYR phosphorylation and ATP depletion were blocked by an inhibitor of adenosine kinase. Plasma concentration of 4PYR was detectable but very low (0.013 +/- 0.006 microm) in contrast with the high daily urine excretion of this compound (26.7 +/- 18.2 micromol/24 h) in healthy subjects, indicating much greater renal clearance than other nicotinamide metabolites, nucleosides, or creatinine. We also noted a 40-fold increase in 4PYR plasma concentration in patients with chronic renal failure (0.563 +/- 0.321 microm). We suggest that 4PYTP formation in the erythrocytes is a hitherto unknown process aimed at sequestering potentially toxic 4PYR in a form that could be safely transported and subsequently released and excreted during passage of erythrocytes through the kidney.
- Published
- 2006
- Full Text
- View/download PDF
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