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Eye lens core Δ14C of Gulf of Mexico outer shelf and upper slope reef fishes matched a regional Δ14C reference time series, but otolith cores were depleted in 14C relative to the reference series. This is due to C in eye lens protein being derived from metabolic sources, with the ultimate source being epipelagic phytoplankton. In contrast, otolith C is derived mainly (70%–80%) from dissolved inorganic C, which is depleted in 14C beyond the epipelagic. Analyzing Δ14C in eye lens cores provides a novel approach for validating age estimates of deepwater (>200 m) fishes, which were unresolved in earlier applications of the bomb 14C chronometer.

Cutting-edge DNA methylation-based epigenetic aging techniques were applied to Gulf of Mexico northern red snapper (Lutjanus campechanus; n = 10; 1–26 years old) and red grouper (Epinephelus morio; n = 10; 2–14 years old). Bisulfite-converted restriction site-associated DNA sequencing was used to identify CpG sites (cytosines followed by guanines) that exhibit age-correlated DNA methylation, and species-specific epigenetic clocks developed from hundreds of CpG sites in each species showed strong agreement between predicted and otolith-derived age (r2 > 0.99 for both species). Results suggest epigenetic age estimation could provide an accurate and efficient approach to mass-aging fishes in a non-invasive manner.

Red snapper, Lutjanus campechanus, supports one of the more important fisheries in marine waters of the United States. Consequently, it has been the focus of intensive fisheries research for more than 20 years. Here, we present a genomic analysis of population structure that uses a landscape genetics approach to characterize patterns of variation in adult red snapper in the Gulf of Mexico (GOM) alongside a synoptic view of decades of stock-structure research. The results support Atlantic and GOM stocks and indicate weak heterogeneity within the GOM. Furthermore, redundancy analysis using Moran Eigenvector Maps based on physical distance, larval dispersal probability, and adult dispersal probability reveal heterogeneity on various spatial scales, with adult movement explaining a larger component of variation than spatial position or larval dispersal. Results of this study support the idea that red snapper in the GOM display metapopulation structure, but also suggest a potential genetic discontinuity along the West Florida Shelf not previously described. The approach of using landscape genomics and dispersal data (larval and/or adult) to better understand metapopulation dynamics is promising for not only red snapper, but also for other marine species that occupy a diversity of habitats and are seemingly distributed continuously.

Marine fish movement plays a critical role in ecosystem functioning and is increasingly studied with acoustic telemetry. Traditionally, this research has focused on single species and small spatial scales. However, integrated tracking networks, such as the Integrated Tracking of Aquatic Animals in the Gulf of Mexico (iTAG) network, are building the capacity to monitor multiple species over larger spatial scales. We conducted a synthesis of passive acoustic monitoring data for 29 species (889 transmitters), ranging from large top predators to small consumers, monitored along the west coast of Florida, USA, over 3 yr (2016-2018). Space use was highly variable, with some groups using all monitored areas and others using only the area where they were tagged. The most extensive space use was found for Atlantic tarpon Megalops atlanticus and bull sharks Carcharhinus leucas. Individual detection patterns clustered into 4 groups, ranging from occasionally detected long-distance movers to frequently detected juvenile or adult residents. Synchronized, alongshore, long-distance movements were found for Atlantic tarpon, cobia Rachycentron canadum, and several elasmobranch species. These movements were predominantly northbound in spring and southbound in fall. Detections of top predators were highest in summer, except for nearshore Tampa Bay where the most detections occurred in fall, coinciding with large red drum Sciaenops ocellatus spawning aggregations. We discuss the future of collaborative telemetry research, including current limitations and potential solutions to maximize its impact for understanding movement ecology, conducting ecosystem monitoring, and supporting fisheries management.

Remotely operated vehicle (ROV) surveys were conducted at reef sites in the northern Gulf of Mexico (nGOM) during 2018–2019. Artificial (AR = 63) and natural (NR = 139) reefs were located in a 2 × 105 km2 area south of Mobile, AL to Destin, FL at depths of 13–75 m. We observed a total of 5371 damselfishes (Family: Pomacentridae) belonging to eight taxa. The non-native regal demoiselle (regal), Neopomacentrus cyanomos, was present at 30.2% of ARs but only 1.4% of NRs with densities ranging from 0.19 to 18.11 fish per 100 m2. Regals were most dense at shallow ARs, comprising 53% of the damselfish community, and least dense at deeper reefs comprising

We tested whether Δ14C values of eye lens protein (crystallin) formed in early life could be utilized to validate marine bony fish age estimates via the bomb radiocarbon chronometer. The slope of the relationship between red snapper (Lutjanus campechanus; n = 8; 0 to 27 years old), otolith and eye lens core Δ14C values was not significantly different than 1, which was also true for seven additional reef fish species (n = 21; 0 to 24 years old). Results demonstrate eye lens core Δ14C can be utilized to validate age estimates of marine fishes, which will be useful in numerous age validation applications.

Large-scale anthropogenic disturbances can have direct and indirect effects on marine communities, with direct effects often taking the form of widespread injury or mortality and indirect effects manifesting as changes in food web structure. Here, we report a time series that captures both direct and indirect effects of the Deepwater Horizon Oil Spill (DWH) on northern Gulf of Mexico (nGoM) reef fish communities. We observed significant changes in community structure immediately following the DWH, with a 38% decline in species richness and 26% decline in Shannon-Weiner diversity. Initial shifts were driven by widespread declines across a range of trophic guilds, with subsequent recovery unevenly distributed among guilds and taxa. For example, densities of small demersal invertivores, small demersal browsers, generalist carnivores, and piscivores remained persistently low with little indication of recovery seven years after the DWH. Initial declines among these guilds occurred prior to the arrival of the now-widespread, invasive lionfish (Pterois spp.), but their lack of recovery suggests lionfish predation may be affecting recovery. Factors affecting persistently low densities of generalist carnivores and piscivores are not well understood but warrant further study given the myriad ecosystem services provided by nGoM reef fishes.

Artificial reefs have been deployed throughout US coastal waters since the late 1970s, primarily to enhance fisheries. Although numerous studies have examined their effects on fish communities, few have examined interactions between artificial reefs and primary producers or their effects on biogeochemistry of the surrounding water column. Understanding how reefs may alter biogeochemistry and primary producers is key to understanding overall reef productivity. In this study, we examined the relationships among epifauna, algae, and biogeochemical processes on artificial reefs located on the shallow Florida shelf in the Northeast Gulf of Mexico over a year following their deployment. We measured oxygen and nutrient fluxes, attached chlorophyll a, and invertebrate macrofauna. Temporal differences in biomass and chlorophyll a production occurred due to changes in in situ conditions including fluctuations in bottom-water temperature over the year as well as decreasing bottom-water oxygen and increasing chlorophyll a fluorescence during the summer. Invertebrate biomass was greater than micro- or macroalgal biomass. Biomass of the invertebrate epifaunal community increased exponentially during the first 5 months of this study. The reef was net heterotrophic with few differences between oxygen or nutrient fluxes in the light and dark. Positive nitrate and nitrite fluxes and abundances of amoA genes in the microbiomes of benthic invertebrates indicate significant nitrification associated with the epifaunal community. Reef biogeochemistry was directly related to the composition and biomass of the epifaunal community at the reef sites.

Geopositioning underwater acoustic telemetry was used to test whether rapid recompression with weighted return-to-depth (descender) devices reduced discard mortality of red snapper (n = 141) and gray triggerfish (n = 26) captured and released at 30–60 m depths at two 15 km2 study sites in the northern Gulf of Mexico. Cox proportional hazards modelling indicated red snapper released with descender devices had significantly lower discard mortality within the first 2 d (95% CI = 18.8–41.8% for descender-released vs. 44.0–72.4% for surface-released, unvented fish), while there was no significant effect of descender devices on discard mortality of gray triggerfish. Predation by large pelagic predators was estimated to account 83% of red snapper and 100% of gray triggerfish discard mortality. Discard mortality due to predation has likely been overlooked in previous mark-recapture, laboratory, and enclosure studies, suggesting cryptic population losses due to predation on discards may be underestimated for red snapper and gray triggerfish. Large-area three-dimensional positioning acoustic telemetry arrays combined with collaboration and data sharing among acoustic telemetry researchers have the potential to advance our knowledge of the processes affecting discard mortality in reef fishes and other taxa.

Shallow continental shelves support productive pelagic and benthic communities. This study examined primary productivity at a shallow shelf region in the northeastern Gulf of Mexico focusing on the effect of light on water column and benthic productivity at water depths between 12 and 17 m. Measurements were made between November 2015 and September 2016. Dissolved oxygen fluxes were measured using benthic chambers with four different light levels and used to calculate gross primary production and respiration. Phytoplankton productivity was measured using 14C-uptake incubations in a laboratory photosynthetron. Organic matter production by benthic microalgae is substantial in this region of northeastern Gulf of Mexico with daily production rates ranging from 0.1 to 0.8 g C m−2 d−1 in this study. Maximum rates of phytoplankton production up to 2.7 g C m−2 d−1 occurred in spring. This peak productivity followed wind conditions favorable to upwelling and occurred when bottom water NO3− concentrations were 11 times greater than on any other sample date during the study. At these shallow depths, benthic microalgae made a significant contribution to total shelf production, averaging about 14% of total production. These results helped characterize benthic and water column production rates prior to planned habitat alterations caused by placement of numerous artificial reef structures in the region.

Mitigating the negative impacts of invasive lionfish (Pterois volitans/miles complex) is a top priority for marine reef fisheries management, with human removals considered the most viable approach to population control. Control efforts via diver spearfishing removals have annually removed tens of thousands of lionfish throughout their invasive range, but the effectiveness of removal efforts to remove 100% or achieve target lionfish densities in a given reef system has not been fully evaluated. Accounting for detection and removal efficacy is necessary for developing and evaluating lionfish management targets, as population- and community-level effects of lionfish removals may be diminished by undetected lionfish remaining in the system. This study quantified lionfish detection, catchability, and removal efficiency to evaluate the effectiveness of lionfish surveys and removal efforts on northern Gulf of Mexico (nGOM) artificial and natural reefs. Detection was assessed during crepuscular and midday time periods via diver and remotely operated vehicle (ROV) video surveys, with covariates for time of day and survey methodology assessed using generalized linear mixed models. Catchability and removal efficiency were estimated via depletion models based on serial removals via spearfishing on 6 artificial reefs and 9 natural reefs. A priori, we had expected lionfish detection to be higher during crepuscular periods given lionfish in the Caribbean and in their native range have been shown to forage more actively away from reefs then. However, we found lionfish detection was not significantly different between midday and crepuscular periods. Survey methodology affected detection, with 24% fewer lionfish being detected via ROV surveys versus diver surveys at artificial reefs and 72% fewer lionfish detected via ROV surveys at natural reefs. Therefore, density estimates on nGOM natural reefs, which constitute of >99% of the region’s habitat, may be higher than previously reported and problematic for lionfish management. Mean catchability for spearfishing lionfish was 0.88 on artificial reefs and 0.69 on natural reefs standardized for area. Mean removal efficiency for the first removal event was 87% on artificial reefs and 67% on natural reefs, higher than removal efficiency computed for Caribbean reefs (47%). Incomplete detection and

Fisheries resources in the U.S. Gulf of Mexico (GoM) are under increasing pressure from both natural and anthropogenic stressors that have potentially broad effects on the ecosystem and introduce considerable uncertainty into management outcomes. To address these issues, more holistic, ecosystem-based tools are needed to inform decision-making. A Scoping Workshop with scientists, managers, and other stakeholders was held to identify and prioritize challenges in the GoM that could be addressed using ecosystem models, and how best to incorporate those models into the existing fisheries assessment and management framework. Challenges identified were associated with uncertainty in stock assessments, environmental stressors, multi-species reference points, invasive species, habitat effects, spatial management, and forage fisheries. Short-term priorities included those that address critical assumptions in stock assessments and inform imminent decision making, whereas long-term priorities were those associated with environmental stressors and novel management approaches. This information is intended to guide future ecosystem modeling efforts and help advance ecosystem based fisheries management in the region.

We tested the efficacy of a stereo camera (SC) system adapted for use with a remotely operated vehicle (ROV) to estimate fish length distributions at reef sites in the northern Gulf of Mexico. A pool experiment was conducted to test the effect of distance (1, 2, 3 or 5 m), angle of incidence (AOI; 0° to 40° at 5° increments), and SC baseline distance (BD; BD1 = 406, BD2 = 610, and BD3 = 762 mm camera separation) on the accuracy and precision of fish model length (288, 552, or 890 mm fork length) estimates compared to a red laser scaler (RLS). A field experiment was then conducted at 20 reef sites with SCs positioned at BD1 to compare fish length distribution estimates between the SC and RLS systems under in situ conditions. In the pool experiment, mean percent errors were consistently within the a priori selected threshold of ±5% at AOIs ≤10° at all distances with all four systems. However, SCs produced accurate estimates at AOIs up to 30° at all distances tested; 2–3 m was optimal. During reef site surveys, SCs collected 10.4 times as many length estimates from 4.3 times as many species compared to the RLS. Study results demonstrate that, compared to laser scalers, ROV-based SC systems can substantially increase the number of available fish length estimates by producing accurate length estimates at a wider range of target orientations while also enabling measurements from a greater portion of the cameras’ field of view.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Fine-scale movement dynamics of adult invasive lionfish may inform the spatial scale of negative impacts to local food webs, the design and efficacy of ongoing removal efforts, and the speed at which lionfish may spread into new habitats, but have not previously been characterized. An acoustic Vemco positioning system (VPS) was used to track fine-scale (

PURPOSE Lifirafenib is an investigational, reversible inhibitor of B-RAFV600E, wild-type A-RAF, B-RAF, C-RAF, and EGFR. This first-in-human, phase I, dose-escalation/dose-expansion study evaluated the safety, tolerability, and efficacy of lifirafenib in patients with B-RAF– or K-RAS/N-RAS–mutated solid tumors. METHODS During dose escalation, adult patients with histologically/cytologically confirmed advanced solid tumors received escalating doses of lifirafenib. Primary end points were safety/tolerability during dose escalation and objective response rate in preselected patients with B-RAF and K-RAS/N-RAS mutations during dose expansion. RESULTS The maximum tolerated dose was established as 40 mg/d; dose-limiting toxicities included reversible thrombocytopenia and nonhematologic toxicity. Across the entire study, the most common grade ≥ 3 treatment-emergent adverse events were hypertension (n = 23; 17.6%) and fatigue (n = 13; 9.9%). One patient with B-RAF–mutated melanoma achieved complete response, and 8 patients with B-RAF mutations had confirmed objective responses: B-RAFV600E/K melanoma (n = 5, including 1 patient treated with prior B-RAF/MEK inhibitor therapy), B-RAFV600E thyroid cancer/papillary thyroid cancer (PTC; n = 2), and B-RAFV600E low-grade serous ovarian cancer (LGSOC; n = 1). One patient with B-RAF–mutated non–small-cell lung cancer (NSCLC) had unconfirmed partial response (PR). Patients with K-RAS–mutated endometrial cancer and K-RAS codon 12–mutated NSCLC had confirmed PR (n = 1 each). No responses were seen in patients with K-RAS/N-RAS–mutated colorectal cancer (n = 20). CONCLUSION Lifirafenib is a novel inhibitor of key RAF family kinases and EGFR, with an acceptable risk-benefit profile and antitumor activity in patients with B-RAFV600–mutated solid tumors, including melanoma, PTC, and LGSOC, as well as K-RAS–mutated NSCLC and endometrial carcinoma. Future comparisons with first-generation B-RAF inhibitors and exploration of lifirafenib alone or as combination therapy in patients with selected RAS mutations who are resistant/refractory to first-generation B-RAF inhibitors are warranted.

Spearfishing is currently the primary approach for removing invasive Indo-Pacific lionfish (Pterois volitans/miles complex) to mitigate their impacts to western Atlantic marine ecosystems. However, a substantial portion of lionfish spawning biomass is beyond the depth limits of SCUBA. Innovative technologies may offer an alternative means to target lionfish and allow for the development of a deepwater lionfish trap fishery, but the removal efficiency and potential environmental impacts of traps have not been evaluated. We tested a collapsible non-containment trap (the ‘Gittings trap’) near artificial reefs in the northern Gulf of Mexico. A total of 327 lionfish and 28 native fishes (4 of which regulated species) recruited to traps (i.e., number of fish observed within the trap footprint) during 82 trap sets, catching 144 lionfish and 29 native species. Lionfish recruitment was highest for single (versus paired) traps deployed 10X higher for lionfish versus native fishes. Gittings traps did not move on the bottom during two major storm events; however, further testing will be necessary to test trap movement with surface buoys. Additional research should also focus on design and operational modifications to improve Gittings trap deployment success (68% successfully opened on the seabed) and reduce lionfish escapement (56% escaped from traps upon retrieval). While removal efficiency for lionfish (12–24%) was far below that of spearfishing, study results demonstrate Gittings traps are suitable for future testing on deepwater natural reefs, which constitute >90% of the region’s reef habitat.

We examined the potential for Gulf of Mexico red snapper (RS) behavior to bias count estimates collected with a remotely operated vehicle (ROV), towed camera sled (TCS), subsurface towed acoustic sled (TAS), or SCUBA diver at artificial reef sites. Near- (≤ 5 m), mid- (≤ 15 m), and far-field (≤ 100 m) responses were examined using stationary stereo cameras, a horizontal acoustic profiler, and three-dimensional acoustic telemetry, respectively. Survey gears were deployed sequentially for 15 min with each gear immediately preceded by a 15-min control period. Near-field data (mean RS min−1) indicated counts were 7.3 times higher with the diver present and 1.9 times higher with the ROV. The TCS had a significant interaction effect with time on mean RS count in the near- and mid-field, as well as depth and acceleration. The TAS had no effect on RS behavior at any scale. Far-field data showed no significant effect of any gear on mean RS distance to reef. Overall, results indicate RS respond neutrally to survey gears at medium (≤ 15 m) to large (≤ 100 m) spatial scales, but small-scale (≤ 5 m) spatial attraction may bias RS counts with benthic survey gears, primarily by individuals near the periphery of the surveyed area approaching the gear.

The use of DNA barcoding in fish diet studies is becoming more widespread, but the effect of prey digestion on barcoding accuracy has been poorly studied. We conducted a series of controlled feeding experiments, with red lionfish (Pterois volitans) as predators and Gulf killifish (Fundulus grandis) as prey, designed to test the effect of digestion time (12–42 h), prey item (sample) preservation (inside versus outside stomach), and sample preparation (washed versus unwashed) on DNA barcoding classification accuracy. Competitive interactions occurred between lionfish and killifish DNA during PCR amplification when universal COI primers were utilized; thus, primers were designed that matched the same priming site in both killifish and lionfish DNA. The proportion of amplified killifish DNA relative to lionfish DNA per sample was estimated using multiplex quantitative PCR (qPCR) and shown to decrease with longer digestion times, especially when samples were retained within lionfish stomachs for preservation. The effects of digestion and preservation method on amplifiable DNA resulted in significant effects on barcoding accuracy, resulting in erroneous identification of the predator (i.e., self-DNA) for nearly 25% of samples. Removing prey from predator stomachs prior to preservation significantly increased the proportion of amplified killifish DNA from samples, and enhanced barcoding accuracy. Overall, study results have important implications for the probability of false negatives for prey items, as well as false positives for self-DNA, when utilizing barcoding to characterize piscine diet. Results also highlight the need to conduct more method validation research given the increasing prevalence of DNA barcoding as a means to identify specific prey items in fish diet studies.

DNA barcoding is used in a variety of ecological applications to identify organisms, including partially digested prey items from diet samples. That particular application can enhance the ability to characterize diet and predator–prey dynamics but is problematic when genetic sequences of prey match those of consumer species (i.e., self-DNA). Such a result may indicate cannibalism, but false positives can result from contamination of degraded prey samples with consumer DNA. Here, nuclear-encoded microsatellite markers were used to genotype invasive lionfish, Pterois volitans, consumers and their prey (n = 80 pairs) previously barcoded as lionfish. Cannibalism was confirmed when samples exhibited two or more different alleles between lionfish and prey DNA across multiple microsatellite loci. This occurred in 26.2% of all samples and in 42% of samples for which the data were considered conclusive. These estimates should be considered conservative given rigorous assignment criteria and low allelic diversity in invasive lionfish populations. The highest incidence of cannibalism corresponded to larger sized consumers from areas with high lionfish densities, suggesting cannibalism in northern Gulf of Mexico lionfish is size- and density-dependent. Cannibalism has the potential to influence population dynamics of lionfish which lack native western Atlantic predators. These results also have important implications for interpreting DNA barcoding analysis of diet in other predatory species where cannibalism may be underreported.

Radiocarbon (Δ14C) was analyzed in northern Gulf of Mexico (nGOM) red snapper (Lutjanus campechanus) otolith cores (n = 23), otolith edge samples (n = 12), and whole age-0 otoliths (n = 9), with edge samples and whole age-0 otoliths constituting known-age samples. There was no significant difference in the linear relationship of Δ14C versus year of formation between regional corals and known-age otolith samples, and a linear regression fit to the combined data from 1980 to 2015 extends the utility of the bomb radiocarbon chronometer for age validation. The entire regional coral and known-age otolith data set (1940 to 2015) was then utilized as a reference series to validate otolith-derived red snapper age estimates for cored otolith samples. A loess regression was fit to the reference data and then the sum of squared residuals (SSR) was computed from predicted versus observed birth years for cored adult otolith samples. This process was then repeated for ages biased ±1–4 years. Ages with no bias applied had the lowest SSR, thus validating red snapper age estimates and demonstrating the utility of the combined regional coral and known-age red snapper otolith Δ14C time series for age validation of nGOM marine fishes.

Growth zones in dorsal spines of grey triggerfish Balistes capriscus from the northern Gulf of Mexico were utilized to estimate growth and examine factors that may affect estimates of size at age. Age was estimated from dorsal-spine sections of 4687 individuals sampled from U.S. waters during 2003-2013, including both fishery-independent (n = 1312) and fishery-dependent (n = 3375) samples. Ninety-six per cent (n = 4498) of these sections were deemed suitable for ageing; average per cent error between two independent readers was 10·8%. Fork length (LF ) ranged from 65 to 697 mm and age estimates from 0 to 14 years. Both sex and sample source (fishery-independent v. recreational) significantly affected estimated size at age for 2-6 year-old fish. Data were pooled between sources to fit sex-specific von Bertalanffy growth functions. Results for the female model were L∞ = 387 mm LF , k = 0·52 year-1 and t0 = 0·01 year, while for males L∞ = 405 mm LF , k = 0·55 year-1 and t0 = 0·02 year. These results were significantly different between sexes and indicate clear sexual dimorphism. Thus, growth should be modelled separately by sex when examining population parameters or conducting stock assessment modelling. The positive bias in estimates of size at age computed for recreational v. fishery-independent samples also has clear implications for stock assessment as growth functions computed with fishery-dependent samples would tend to overestimate stock productivity.

Key methodological assumptions regarding the degree of natural variability and influence of sample handling and storage of elasmobranch vertebral chemistry were assessed using laser-ablation inductively coupled plasma mass spectrometry. Vertebral chemistry of juvenile blacktip sharks Carcharhinus limbatus was examined to identify whether differences existed among different regions of the vertebral column, between thoracic vertebrae of individual fish or within individual vertebrae. Additionally, the effects of bleach exposure and storage in ethanol on vertebral chemistry were compared. No significant variation in vertebral chemistry was found among different regions of the vertebral column or between thoracic vertebrae, but significant differences among transect locations within individual vertebrae were observed. The variation at all three levels appears comparable with published data on sagittal otoliths of bilaterally symmetrical teleost fishes. The experimental assessment of potential treatment effects indicated vertebral chemistry was not significantly affected by bleach or exposure to ethanol. Taken together, these results support the idea that vertebrae taken from the same region of the vertebral column can be treated as equivalent and at least certain elements remain robust to exposure to bleach and ethanol.

Species invasions in marine ecosystems pose a threat to native fish communities and can disrupt the food webs that support valuable commercial and recreational fisheries. In the Gulf of Mexico, densities of invasive Indo-Pacific Lionfish, Pterois volitans and P. miles, are among the highest in their invaded range. In a workshop setting held over a 2-week period, we adapted an existing trophic dynamic model of the West Florida Shelf, located in the eastern Gulf of Mexico, to simulate the lionfish (both species) invasion and community effects over a range of harvest scenarios for both lionfish and native predators. Our results suggest small increases in lionfish harvest can reduce peak biomass by up to 25% and also that reduced harvest of native reef fish predators can lead to lower lionfish densities. This model can help managers identify target harvest and benefits of a lionfish fishery and inform the assessment and management of valuable reef fish fisheries.

Invasive Indo-Pacific red lionfish (Pterois volitans) have become well-established residents within reef communities across the western Atlantic Ocean where they pose substantial threats to native fish communities and reef ecosystems. Species-specific identification of prey is necessary to elucidate predator–prey interactions, but can be challenging with traditional visual identification methods given prey are often highly digested, thus not identifiable visually. To supplement visual diet analysis of lionfish (n = 934) sampled in the northern Gulf of Mexico, we applied DNA barcoding to identify otherwise unidentifiable fish prey (n = 696) via amplification of the cytochrome c oxidase subunit I (COI) of the mitochondrial genome. Barcoding nearly doubled the number of identifiable fish prey, thereby greatly enhancing our ability to describe lionfish diet. Thirty-three fish prey species were identified via barcoding, twenty-four of which were not previously detected by traditional methods. Some exploited reef fishes were newly reported (e.g., red snapper, Lutjanus campechanus) or found to constitute higher proportions of lionfish diet than previously reported (e.g., vermilion snapper, Rhomboplites aurorubens). Barcoding added a significant amount of new dietary information, and we observed the highest prey diversity reported to date for invasive lionfish. Potential cannibalism on juveniles also was identified via DNA barcoding, with the highest incidence corresponding to high lionfish densities, thus suggesting density-dependent prey demand may have driven this response. Overall, DNA barcoding greatly enhanced our ability to describe invasive lionfish diet in this study, suggesting that even studies with relatively large diet sample sizes could benefit from barcoding analysis.

Few data exist to evaluate the performance or assess the potential impacts of hook regulations on catchability or selectivity of recreational fisheries in the northern Gulf of Mexico. The purpose of this study was to test the effects of hook type (circle vs. J hook) and hook size (1/0, 4/0, and 7/0) on catch composition, traumatic hooking, species-specific catches, and size-selectivity of red snapper, Lutjanus campechanus, and grey triggerfish, Balistes capriscus. Selectivity was estimated by conditioning size distributions from hook-specific catches against in situ size distributions observed with a remotely operated vehicle. Deep hooking (hook set in gills or beyond) was low in all hook treatments for red snapper (

Instruments are often deployed at depth for weeks to years for a variety of marine applications. In many cases, divers can be deployed to retrieve instruments, but divers are constrained by depth limitations and safety concerns. Acoustic release technology can also be employed but can add considerable expense and acoustic releases will at times fail. Here, we report a simple method that utilizes a commercially available mooring hook integrated with a mini remotely operated vehicle to attach lines to instruments deployed on the sea floor, which can then be winched to the surface. The mooring hook apparatus was tested in a pool setting and then used to retrieve acoustic telemetry receiver bases (50 kg) or fish traps (30-50 kg) from the northern Gulf of Mexico continental shelf at depths between 28 and 80 m. During 2013-2019, 539 retrievals (100% success rate) were made of receiver bases (n = 239) and traps (n = 300) on 30 sea days using this approach. This method could easily be applied to other types of instruments, or recovery and salvage of objects that are too deep for standard diving operations.

Direct exposure to petroleum compounds was widely reported for a variety of taxa following the DWH. Evidence of exposure ranged from oiling of skin, shells, or feathers, depending on the taxa, to observation of ingested oil in small translucent, invertebrates, to biomarkers of petroleum compounds within an organism’s tissues, such as PAHs in the hepatopancreas of invertebrates or the liver of fishes, or metabolic products of PAH catabolism in the bile of various vertebrate taxa. Development of natural biogeochemical tracers to examine indirect effects, especially over long (months to years) time scales, can be much more problematic. In this chapter, we describe the utility of employing stable isotopes and radioisotopes to 1) examine whether food web effects can be inferred from shifts in stable isotope values measured in vertebrate taxa; 2) examine the assimilation and trophic transfer of petrocarbon in marine food webs; and, 3) serve as long-term biogeochemical tracers either of petrocarbon assimilation or trophic shifts that are indicative of food web effects of marine oil spills. Data and analyses are largely drawn from DWH-related studies but with broader implications to marine oil spills in general.

Substantial declines in reef fishes were observed at northern Gulf of Mexico artificial reef sites between 2009�2010 and 2011�2012, a period that bracketed the appearance of invasive lionfish in this ecosystem. Small demersal reef fishes, the predominant prey of lionfish in other sys- tems, displayed the greatest declines. However, a confounding factor during this time was the Deepwater Horizon Oil Spill (DWH) in summer 2010. In some areas, targeted lionfish removals have been demonstrated to mitigate negative effects on native fishes. Therefore, we conducted a 2 yr experiment to examine the effectiveness and ecological benefits of targeted lionfish removals at artificial reefs (n = 27) off northwest Florida, USA, where lionfish densities reached the highest recorded in the western Atlantic by 2013. All lionfish were removed via spearfishing from 17 reefs in December 2013, 9 of which were periodically re-cleared of lionfish through May 2015. Remain- ing sites served as uncleared controls. Both juvenile and adult lionfish quickly recruited to cleared reefs, with lionfish reaching pre-clearance densities in