537 results on '"Wing C. Chan"'
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2. Nodal peripheral T-cell lymphomas in the new classification systems
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Catalina Amador and Wing C. Chan
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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3. MYC overexpression in natural killer cell lymphoma: prognostic and therapeutic implications
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Chengfeng Bi, Yuhua Huang, Roshia Ali, Fang Wang, Xia Yang, Alyssa Bouska, Lu Xu, Xinbao Hao, Matthew A. Lunning, Wing C. Chan, Javeed Iqbal, Dennis D. Weisenburger, Julie M. Vose, and Kai Fu
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
The current clinical management of Extranodal NK/T-cell lymphoma (ENKTL) primarily depends on conventional chemotherapy and radiotherapy, underscoring the need for innovative therapeutic strategies. This study explores the clinical significance and therapeutic implication of c-MYC (MYC) in ENKTL. Initially, we identified MYC protein overexpression in approximately 75% of cases within a large cohort of 111 patients. MYC overexpression was strongly correlated with lymphoma cell proliferation and poor clinical outcomes. Intriguingly, integrating MYC expression into the PINK-E prognostic model significantly enhanced its predictive power. Subsequently, we implemented MYC knockdown (KD) in NK malignancy cell lines with MYC overexpression, resulting in significant viability reduction. RNA-sequencing (RNA-seq) used to determine MYC function revealed a high overlap with canonical MYC-regulated genes and enrichment in metabolism and cell cycle regulation. Integrative analysis of the RNA-seq data upon MYC KD with gene expression profiles of primary ENKTL cases identified a subset of genes closely associated with MYC overexpression. Among these, CDK4 emerged as a potential therapeutic target, and its inhibition not only abrogated MYC function but also decreased MYC expression in NK malignancy cells. Furthermore, the clinical-grade CDK4/6 inhibitor palbociclib exhibited a potent anti-tumor effect in xenograft mouse models, especially when combined with gemcitabine. In summary, our study firmly establishes MYC as an oncogene with prognostic significance in ENKTL and highlights CDK4 inhibition as a promising therapeutic strategy for treating ENKTL with MYC overexpression.
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- 2024
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4. The impact of unexpected intensive care unit admission after cancer surgery on long-term symptom burden among older adults: a population-based longitudinal analysis
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Bourke W. Tillmann, Julie Hallet, Rinku Sutradhar, Matthew P. Guttman, Natalie Coburn, Tyler R. Chesney, Jesse Zuckerman, Alyson Mahar, Wing C. Chan, Barbara Haas, and members of the REcovery after Surgical Therapy for Older adults REsearch –Cancer (RESTORE-C) group
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Neoplasm/surgery ,Critical care ,Older adults ,Recovery of function ,Quality of life ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Older adults are at high-risk for a post-operative intensive care unit (ICU) admission, yet little is known about the impact of these admissions on quality of life. The objective of this study was to evaluate the impact of an unexpected post-operative ICU admission on the burden of cancer symptoms among older adults who underwent high-intensity cancer surgery and survived to hospital discharge. Methods We performed a population-based cohort study of older adults (age ≥ 70) who underwent high-intensity cancer surgery and survived to hospital discharge in Ontario, Canada (2007–2017). Using the Edmonton Symptom Assessment System (ESAS), a standardized tool that quantifies patient-reported physical, mental, and emotional symptoms, we described the burden of cancer symptoms during the year after surgery. Total symptom scores ≥ 40 indicated a moderate-to-severe symptom burden. Modified log-Poisson analysis was used to estimate the impact of an unexpected post-operative ICU admission (admission not related to routine monitoring) on the likelihood of experiencing a moderate-to-severe symptom burden during the year after surgery, accounting for potential confounders. We then used multivariable generalized linear mixed models to model symptom trajectories among patients with two or more ESAS assessments. A 10-point difference in total symptom scores was considered clinically significant. Results Among 16,560 patients (mean age 76.5 years; 43.4% female), 1,503 (9.1%) had an unexpected ICU admission. After accounting for baseline characteristics, patients with an unexcepted ICU admission were more likely to experience a moderate-to-severe symptom burden relative to those without an unexpected ICU admission (RR 1.64, 95% CI 1.31–2.05). Specifically, among patients with an unexcepted ICU admission the average probability of experiencing moderate-to-severe symptoms ranged from 6.9% (95 CI 5.8–8.3%) during the first month after surgery to 3.2% (95% CI 0.9–11.7%) at the end of the year. Among the 11,229 (67.8%) patients with multiple ESAS assessments, adjusted differences in total scores between patients with and without an unexpected ICU admission ranged from 2.0 to 5.7-points throughout the year (p
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- 2023
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5. Pain and Interventions in Stage IV Non-Small Cell Lung Cancer: A Province-Wide Analysis
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Vivian S. Tan, Michael C. Tjong, Wing C. Chan, Michael Yan, Victoria Delibasic, Gail Darling, Laura E. Davis, Mark Doherty, Julie Hallet, Biniam Kidane, Alyson Mahar, Nicole Mittmann, Ambika Parmar, Hendrick Tan, Frances C. Wright, Natalie G. Coburn, and Alexander V. Louie
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non-small cell lung cancer ,pain ,quality of life ,patient-reported outcomes ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Pain is a common symptom in stage IV non-small cell lung cancer (NSCLC). The objective of the study was to examine the use of interventions and factors associated with interventions for pain. A population-based cohort study in Ontario, Canada was conducted with patients diagnosed with stage IV NSCLC from January 2007 to September 2018. An Edmonton Symptom Assessment System (ESAS) score of ≥4 defined moderate-to-severe pain following diagnosis. The study cohort included 13,159 patients, of which 68.5% reported at least one moderate-to-severe pain score. Most patients were assessed by a palliative care team (85.4%), and the majority received radiation therapy (73.2%). The use of nerve block was rare (0.8%). For patients ≥65 years of age who had drug coverage, 59.6% received an opiate prescription. Patients with moderate-to-severe pain were more likely to receive palliative assessment or radiation therapy compared to patients with none or mild pain. Patients aged ≥70 years and with a greater comorbidity burden were associated with less likelihood to receive radiation therapy. Patients from rural/non-major urban residence and with a greater comorbidity burden were also less likely to receive palliative care assessment. Factors associated with interventions for pain are described to inform future symptom management in this population.
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- 2023
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6. The Era of Genomic Research for Lymphoma: Looking Back and Forward
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Wing C. Chan and Javeed Iqbal
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lymphoma ,gene expression profiling ,genetics ,tumor microenvironment ,diagnostics ,Medicine - Abstract
Technological and informatics advances as well as the availability of well-annotated and reliable genomic data have ushered in the era of genomics research. We describe in this brief review how the genomics approach has impacted lymphoma research in the understanding of the pathogenesis and biology of lymphoma, in lymphoma diagnosis and in targeted therapy. Some exciting directions that could be explored in the future are also discussed.
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- 2022
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7. Patterns of First-Line Systemic Therapy Delivery and Outcomes in Advanced Epithelial Ovarian Cancer in Ontario
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Shiru L. Liu, Wing C. Chan, Geneviève Bouchard-Fortier, Stephanie Lheureux, Sarah E. Ferguson, and Monika K. Krzyzanowska
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ovarian cancer ,bevacizumab ,real-world evidence ,health care utilization ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background: First-line treatment of epithelial ovarian cancer (EOC) consists of a combination of cytoreductive surgery and platinum-based chemotherapy. Recently, targeted therapies such as bevacizumab have been shown to improve oncologic outcomes in a subset of a high-risk population. The objective of this study is to evaluate the patterns of practice and outcomes of first-line systemic treatment of advanced EOC, focusing on the adoption of bevacizumab. Methods: A population cohort study was conducted using administrative data in Ontario, Canada. Patients diagnosed with advanced stage non-mucinous EOC between 2014 and 2018 were identified. Datasets were linked to obtaining information on first-line treatment including surgery, systemic therapy, providers of care, systemic therapy facilities, and acute care utilization (emergency department (ED) visits and hospitalizations) during systemic treatment. Multivariate logistic regression was used to determine factors associated with systemic therapy utilization. Results: Among 3726 patients with advanced EOC, 2838 (76%) received chemotherapy: 1316 (47%) received neoadjuvant chemotherapy, 1060 (37%) underwent primary cytoreductive surgery followed by chemotherapy, and 462 (16%) received chemotherapy only. The median age was 67 (range: 20–100). Most chemotherapies were prescribed by gynecologic oncologists (60%) and in level 1 academic cancer centres (58%). Only 54 patients (3.1%) received bevacizumab in the first-line setting after its approval in Ontario in 2016. Bevacizumab was more likely to be administered by medical oncologists compared to gynecologic oncologists (OR 3.95, 95% CI 2.11–7.14). In total, 1561 (55%) and 1594 (56%) patients had at least one ED visit and/or hospitalization during systemic treatment, respectively. The most common reasons for ED visits were fever and bowel obstruction. Conclusion: Patterns of care for EOC in Ontario differed between care providers. The uptake of bevacizumab for first-line treatment of EOC was low. Acute care utilization related to EOC was high.
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- 2022
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8. Low T-cell proportion in the tumor microenvironment is associated with immune escape and poor survival in diffuse large B-cell lymphoma
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Joo Y. Song, Mary Nwangwu, Ting-Fang He, Weiwei Zhang, Hany Meawad, Victoria Bedell, Joyce Murata-Collins, Pamela Skrabek, Michel R. Nasr, David Scott, James Godfrey, Peter Lee, Wing C. Chan, Dennis D. Weisenburger, Anamarija M. Perry, and Alex F. Herrera
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
The tumor microenvironment (TME) is important in the pathogenesis and prognosis of lymphoma. Previous studies have demonstrated that features of the diffuse large B-cell lymphoma (DLBCL) TME can be associated with prognosis, but questions remain about the mechanisms underlying these TME features, and the interplay between tumor cells and the local TME. Therefore, we performed multispectral immunofluorescence (mIF) using two 6-color panels to interrogate the cellular proportions of T-cell subsets, macrophages, and natural killer cells in 57 cases of de novo DLBCL treated with R-CHOP chemotherapy. We found that very low CD3+ T-cell proportion and low CD4+PD1+ and CD8+PD1+ T cells have poor survival compared to those with a high T-cell proportion. Also, cases with concurrently low TIM3 and PD1 have a poor prognosis. This poor prognosis with low T-cell proportion was validated using immune deconvolution of gene expression profiling data from 351 cases of DLBCL and an additional cohort of 53 cases of DLBCL using routine immunohistochemistry. In addition, cases with loss of B2M, HLA I and/or HLA II protein expression on the tumor cells also had a low T-cell proportion, providing evidence that lack of these proteins allows for immune evasion. Overall, our results show that patients with DLBCL with a low T-cell proportion in the TME have a poor survival when treated with R-CHOP and exhibit mechanisms of immune escape.
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- 2023
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9. Genomic Analysis of Cutaneous CD30-Positive Lymphoproliferative Disorders
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Farah R. Abdulla, Weiwei Zhang, Xiwei Wu, Kord Honda, Hanjun Qin, Hyejin Cho, Christiane Querfeld, Jasmine Zain, Steven Terry Rosen, Wing C. Chan, Vishwas Parekh, and Joo Y. Song
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Dermatology ,RL1-803 - Abstract
Primary cutaneous CD30+ T-cell lymphoproliferative disorders are the second most common cutaneous lymphomas. According to the World Health Organization, CD30+ T-cell lymphoproliferative disorders include primary cutaneous anaplastic large cell lymphoma (C-ALCL) and lymphomatoid papulosis (LyP) as well as borderline lesions. C-ALCL and LyP are thought to represent two ends of a spectrum of diseases that have different clinical presentations, clinical courses, and prognoses in their classic forms but share the same histology of medium to large CD30+ atypical lymphoid cell infiltrates. Because the behavior of these entities is different clinically and prognostically, we aim to search for oncogenic genomic variants using whole-exome sequencing that drive the development of LyP and C-ALCL. Clinical information, pathology, immunohistochemistry, and T-cell rearrangements on six cases of LyP and five cases of C-ALCL were reviewed to confirm the rendered diagnosis before whole-exome sequencing of all specimens. Both LyP and C-ALCL had recurrent alterations in epigenetic modifying genes affecting histone methylation and acetylation (SETD2, KMT2A, KMT2D, and CREBBP). However, they also harbor unique differences with mutations in signal transducer and activator of transcription gene STAT3 of the Jak/signal transducer and activator of transcription pathway and EOMES, a transcription factor involved in lymphocyte development, only noted in C-ALCL specimens. Genomic characterization of LyP and C-ALCL in this series confirms the role of multiple pathways involved in the biology and development of these lymphomatous processes. The identification of similar aberrations within the epigenetic modifying genes emphasizes common potential development mechanisms of lymphomagenesis within lymphoproliferative disorders being shared between LyP and C-ALCL; however, the presence of differences may account for the differences in clinical course.
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- 2022
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10. MAPK and JAK-STAT pathways dysregulation in plasmablastic lymphoma
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Joan Enric Ramis-Zaldivar, Blanca Gonzalez-Farre, Alina Nicolae, Svetlana Pack, Guillem Clot, Ferran Nadeu, Anja Mottok, Heike Horn, Joo Y. Song, Kai Fu, George Wright, Randy D. Gascoyne, Wing C. Chan, David W. Scott, Andrew L. Feldman, Alexandra Valera, Anna Enjuanes, Rita M. Braziel, Erlend B. Smeland, Louis M. Staudt, Andreas Rosenwald, Lisa M. Rimsza, German Ott, Elaine S. Jaffe, Itziar Salaverria, and Elias Campo
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Plasmablastic lymphoma (PBL) is an aggressive B-cell lymphoma with an immunoblastic/large-cell morphology and terminal B-cell differentiation. The differential diagnosis from Burkitt lymphoma, plasma cell myeloma and some variants of diffuse large B-cell lymphoma may be challenging because of the overlapping morphological, genetic and immunophenotypic features. Furthermore, the genomic landscape in PBL is not well known. To characterize the genetic and molecular heterogeneity of these tumors, we investigated 34 cases of PBL using an integrated approach, including fluorescence in situ hybridization, targeted sequencing of 94 B-cell lymphoma-related genes, and copy-number arrays. PBL were characterized by high genetic complexity including MYC translocations (87%), gains of 1q21.1-q44, trisomy 7, 8q23.2- q24.21, 11p13-p11.2, 11q14.2-q25, 12p and 19p13.3-p13.13, losses of 1p33, 1p31.1-p22.3, 13q and 17p13.3-p11.2, and recurrent mutations of STAT3 (37%), NRAS and TP53 (33%), MYC and EP300 (19%) and CARD11, SOCS1 and TET2 (11%). Pathway enrichment analysis suggested a cooperative action between MYC alterations and MAPK (49%) and JAK-STAT (40%) signaling pathways. Of note, Epstein-Barr virus (EBV)-negative PBL cases had higher mutational and copy-number load and more frequent TP53, CARD11 and MYC mutations, whereas EBVpositive PBL tended to have more mutations affecting the JAK-STAT pathway. In conclusion, these findings further unravel the distinctive molecular heterogeneity of PBL identifying novel molecular targets and the different genetic profile of these tumors in relation to EBV infection.
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- 2021
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11. Genetic manipulation of primary human natural killer cells to investigate the functional and oncogenic roles of PRDM1
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Gehong Dong, Yuping Li, Logan Lee, Xuxiang Liu, Yunfei Shi, Xiaoqian Liu, Alyssa Bouska, Qiang Gong, Lingbo Kong, Jinhui Wang, Chih-Hong Lou, Timothy W. McKeithan, Javeed Iqbal, and Wing C. Chan
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Extra-nodal natural killer/T-cell lymphoma, nasal type (ENKTCL) is a highly aggressive lymphoma, where the tumor suppressor gene (TSG) PRDM1 is frequently lost/inactivated. We employed two different CRISPR/Cas9 approaches to generate PRDM1-/- primary NK cells to study its role in NK-cell homeostasis. PRDM1-/- NK cells showed a marked increase in cloning efficiency, higher proliferation rate and less apoptosis compared with their wild type counterparts. Gene expression profiling demonstrated a marked enrichment in pathways associated with proliferation, cell cycle, MYC, MYB and TCR/NK signaling in PRDM1-/- NK cells, but pathways associated with normal cellular functions including cytotoxic functions were down-regulated, suggesting that the loss of PRDM1 shifted NK cells toward proliferation and survival rather than the performance of its normal functions. We were also able to further modify a PRDM1 deleted clone to introduce heterozygous deletions of common TSG in ENKTCL such as TP53, DDX3X, or PTPN6. We have established an in vitro model to elucidate the major pathways through which PRDM1 mediates its homeostatic control of NK-cells. This approach can be applied to the study of other relevant genetic lesions and oncogenic collaborations in lymphoma pathogenesis.
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- 2020
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12. Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target
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Olli Dufva, Matti Kankainen, Tiina Kelkka, Nodoka Sekiguchi, Shady Adnan Awad, Samuli Eldfors, Bhagwan Yadav, Heikki Kuusanmäki, Disha Malani, Emma I Andersson, Paavo Pietarinen, Leena Saikko, Panu E. Kovanen, Teija Ojala, Dean A. Lee, Thomas P. Loughran, Hideyuki Nakazawa, Junji Suzumiya, Ritsuro Suzuki, Young Hyeh Ko, Won Seog Kim, Shih-Sung Chuang, Tero Aittokallio, Wing C. Chan, Koichi Ohshima, Fumihiro Ishida, and Satu Mustjoki
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Science - Abstract
Aggressive natural killer-cell leukemia (ANKL) has few targeted therapies. Here ANKL patients are reported to harbor STAT3, RAS-MAPK pathway, DDX3X and epigenetic modifier mutations; and drug sensitivity profiling uncovers the importance of the JAK-STAT pathway, revealing potential ANKL therapeutic targets.
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- 2018
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13. Myeloproliferative and lymphoproliferative malignancies occurring in the same patient: a nationwide discovery cohort
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Johanne M. Holst, Trine L. Plesner, Martin B. Pedersen, Henrik Frederiksen, Michael B. Møller, Michael R. Clausen, Marcus C. Hansen, Stephen Jacques Hamilton-Dutoit, Peter Nørgaard, Preben Johansen, Tobias Ramm Eberlein, Bo K. Mortensen, Gustav Mathiasen, Andreas Øvlisen, Rui Wang, Chao Wang, Weiwei Zhang, Hans Beier Ommen, Jesper Stentoft, Maja Ludvigsen, Wayne Tam, Wing C. Chan, Giorgio Inghirami, and Francesco d'Amore
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Myeloid and lymphoid malignancies are postulated to have distinct pathogenetic mechanisms. The recent observation that patients with a myeloproliferative neoplasm have an increased risk of developing lymphoproliferative malignancy has challenged this assumption. We collected a nationwide cohort of patients with both malignancies. Patients diagnosed in 1990-2015 were identified through the national Danish Pathology Registry. We identified 599 patients with myeloproliferative neoplasm and a concomitant or subsequent diagnosis of lymphoma. Histopathological review of the diagnostic samples from each patient led to a final cohort of 97 individuals with confirmed dual diagnoses of myeloproliferative neoplasm and lymphoma. The age range at diagnosis was 19-94 years (median: 71 years). To avoid the inclusion of cases of therapy-induced myeloproliferative neoplasm occurring in patients previously treated for lymphoma, only patients with myeloproliferative neoplasm diagnosed unequivocally before the development of lymphoma were included. The average time interval between the diagnoses of the two malignancies was 1.5 years. In the majority of patients (90%) both diagnoses were established within 5 years from each other. Among the lymphoma entities, the frequency of peripheral T-cell lymphomas was markedly increased. Interestingly, all but one of the T-cell lymphomas were of angioimmunoblastic type. These findings suggest that myeloproliferative neoplasm and lymphoproliferative malignancy developing in the same patient may have common pathogenetic events, possibly already at progenitor level. We believe that the molecular characterization of the newly developed biorepository will help to highlight the mechanisms driving the genesis and clonal evolution of these hematopoietic malignancies.
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- 2019
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14. Inhibition of 4EBP phosphorylation mediates the cytotoxic effect of mechanistic target of rapamycin kinase inhibitors in aggressive B-cell lymphomas
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Chengfeng Bi, Xuan Zhang, Ting Lu, Xiaoyan Zhang, Xianhuo Wang, Bin Meng, Huilai Zhang, Ping Wang, Julie M. Vose, Wing C. Chan, Timothy W. McKeithan, and Kai Fu
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Mechanistic target of rapamycin (mTOR) complex 1 is a central integrator of nutrient and growth factor inputs that controls cell growth in eukaryotes. The second generation of mTOR kinase inhibitors (TORKi), directly targeting the mTOR catalytic site, are more effective than rapamycin and its analogs in cancer treatment, particularly in inducing apoptosis. However, the mechanism underlying the cytotoxic effect of TORKi remains elusive. Herein, we demonstrate that TORKi-induced apoptosis is predominantly dependent on the loss of mTOR complex 1-mediated 4EBP activation. Knocking out RICTOR, a key component of mTOR complex 2, or inhibiting p70S6K has little effect on TORKi-induced apoptosis. Conversely, increasing the eIF4E:4EBP ratio by either overexpressing eIF4E or knocking out 4EBP1/2 protects lymphoma cells from TORKi-induced cytotoxicity. Furthermore, downregulation of MCL1 expression plays an important role in TORKi-induced apoptosis, whereas BCL-2 overexpression confers resistance to TORKi treatment. We further show that the therapeutic effect of TORKi in aggressive B-cell lymphomas can be predicted by BH3 profiling, and improved by combining it with pro-apoptotic drugs, especially BCL-2 inhibitors, both in vitro and in vivo. Taken together, the study herein provides mechanistic insight into TORKi cytotoxicity and identified a potential way to optimize its efficacy in the clinical treatment of aggressive B-cell lymphoma.
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- 2017
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15. Comment on: Frequent CTLA4-CD28 gene fusion in diverse types of T-cell lymphoma, by Yoo et al.
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Qiang Gong, Chao Wang, Joseph Rohr, Andrew L. Feldman, Wing C. Chan, and Timothy W. McKeithan
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2016
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16. Suitability of Stratagene reference RNA for analysis of lymphoid tissues
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Karen Dybkær, Guimei Zhou, Javeed Iqbal, David Kelly, Li Xiao, Simon Sherman, Francesco d'Amore, and Wing C. Chan
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Biology (General) ,QH301-705.5 - Abstract
We evaluated a lymphoid RNA standard prepared in our laboratory for spotted microarrays against the Universal Human Reference standard from Stratagene. Our goal was to determine if the Stratagene standard, which contains only two lymphoid cell lines out of a pool of 10 human cancer cell lines, had acceptable gene coverage to serve as a comprehensive standard for gene expression profiling of lymphoid tissues. Our lymphoid standard was prepared from thymus, spleen, tonsil, and cell lines representing immature B cells, plasma cells, and natural killer (NK) cells, thus covering the entire spectrum of lymphoid cells and most stromal elements present in specialized lymphoid tissues. The two standards were co-hybridized on oligonucleotide microarrays containing 17,260 genes, and both had fluorescence intensities above background for approximately 85% of the genes. Despite the limited representation of lymphoid cells in the Stratagene standard, only 4.2% genes exhibited expression differences greater than 2-fold including only 0.35% with differences greater than 4-fold. Although the lymphoid standard reflected a more comprehensive representation of immune system-associated genes, the Stratagene standard has the advantage of being commercially available, enabling easier comparison across laboratories and allowing comparative studies across a long period of time.
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- 2004
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17. STAT3-mediated activation of microRNA cluster 17~92 promotes proliferation and survival of ALK-positive anaplastic large cell lymphoma
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Elisa Spaccarotella, Elisa Pellegrino, Manuela Ferracin, Cristina Ferreri, Giuditta Cuccuru, Cuiling Liu, Javeed Iqbal, Daniela Cantarella, Riccardo Taulli, Paolo Provero, Ferdinando Di Cunto, Enzo Medico, Massimo Negrini, Wing C. Chan, Giorgio Inghirami, and Roberto Piva
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Systemic anaplastic large cell lymphoma is a category of T-cell non-Hodgkin’s lymphoma which can be further subdivided into two distinct entities (ALK+ and ALK−) based on the presence or absence of ALK gene rearrangements. Among several pathways triggered by ALK signaling, constitutive activation of STAT3 is strictly required for ALK-mediated transformation and survival. Here we performed genome-wide microRNA profiling and identified 48 microRNA concordantly modulated by the inducible knock-down of ALK and STAT3. To evaluate the functional role of differentially expressed miRNA, we forced their expression in ALK+ anaplastic large cell lymphoma cells, and monitored their influence after STAT3 depletion. We found that the expression of the microRNA-17~92 cluster partially rescues STAT3 knock-down by sustaining proliferation and survival of ALK+ cells. Experiments in a xenograft mouse model indicated that forced expression of microRNA-17~92 interferes with STAT3 knock-down in vivo. High expression levels of the microRNA-17~92 cluster resulted in down-regulation of BIM and TGFβRII proteins, suggesting that their targeting might mediate resistance to STAT3 knock-down in anaplastic large cell lymphoma cells. We speculate that the microRNA-17~92 cluster is involved in lymphomagenesis of STAT3+ ALCL and that its inhibition might represent an alternative avenue to interfere with ALK signaling in anaplastic large cell lymphomas.
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- 2014
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18. Tobacco retailer density surrounding schools and youth smoking behaviour: a multi-level analysis
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Wing C. Chan and Scott T. Leatherdale
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smoking behaviour ,daily smoking ,neighbourhood disadvantage ,occasional smoker ,youth smoking ,Diseases of the respiratory system ,RC705-779 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Youth smoking prevention should be a public health priority. It is not only vital to prevent youth from smoking but also to prevent non-smoking youth from becoming susceptible to smoking. Past research has examined factors associated with youth’s susceptibility to become a future smoker, but research has yet to examine tobacco retailer density and susceptibility to smoking among never smokers. The objectives of this study are to examine how tobacco retailer density surrounding schools and social smoking influences are associated with smoking susceptibility among youth of never smokers, and occasional and daily smoking among youth of current smokers. Methods Data were collected in 2005-2006 from grade 9 to 12 students attending 76 secondary schools in Ontario, Canada, as part of the SHAPES-On study. A series of multi-level logistic regression analyses were performed to understand how student- and school-level factors are associated with three smoking behaviour outcomes: smoking susceptibility among never smokers, occasional smoking, and daily smoking. Results The number of tobacco retailers surrounding a school was found to be associated with the likelihood of a never smoker being susceptible to future smoking (OR 1.03, 95CI% 1.01, 1.05). We also identified that being surrounded by smoking social influences, specifically family and close friends, can substantially increase the likelihood that never smokers are at risk for future smoking or that youth are already occasional or daily smokers. Conclusions We identified that the number of tobacco retailers surrounding a school was associated with an increased odds of being susceptible to future smoking among male never smokers. Smoking social models surrounding youth also appears to have an important impact on their smoking behaviour regardless of their smoking status. It is important for youth smoking prevention programs to begin early, interrupt youths’ susceptibility to future smoking, and focus on subgroups that are at higher risk of smoking. The government should consider the impact of tobacco retailer density on youth smoking behaviour, and be cautious when granting licenses for establishments to sell tobacco products.
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- 2011
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19. High microvessel density determines a poor outcome in patients with diffuse large B-cell lymphoma treated with rituximab plus chemotherapy
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Teresa M. Cardesa-Salzmann, Luis Colomo, Gonzalo Gutierrez, Wing C. Chan, Dennis Weisenburger, Fina Climent, Eva González-Barca, Santiago Mercadal, Leonor Arenillas, Sergio Serrano, Ray Tubbs, Jan Delabie, Randy D. Gascoyne, Joseph M Connors, Jose L. Mate, Lisa Rimsza, Rita Braziel, Andreas Rosenwald, Georg Lenz, George Wright, Elaine S. Jaffe, Louis Staudt, Pedro Jares, Armando López-Guillermo, and Elias Campo
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Background Diffuse large B-cell lymphoma is a clinically and molecularly heterogeneous disease. Gene expression profiling studies have shown that the tumor microenvironment affects survival and that the angiogenesis-related signature is prognostically unfavorable. The contribution of histopathological microvessel density to survival in diffuse large B-cell lymphomas treated with immunochemotherapy remains unknown. The purpose of this study is to assess the prognostic impact of histopathological microvessel density in two independent series of patients with diffuse large B-cell lymphoma treated with immunochemotherapy.Design and Methods One hundred and forty-seven patients from the Leukemia Lymphoma Molecular Profiling Project (training series) and 118 patients from the Catalan Lymphoma-Study group-GELCAB (validation cohort) were included in the study. Microvessels were immunostained with CD31 and quantified with a computerized image analysis system. The stromal scores previously defined in 110 Leukemia Lymphoma Molecular Profiling Project cases were used to analyze correlations with microvessel density data.Results Microvessel density significantly correlated with the stromal score (r=0.3209; P
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- 2011
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20. Low levels of monoclonal small B cells in the bone marrow of patients with diffuse large B-cell lymphoma of activated B-cell type but not of germinal center B-cell type
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Anne M. Tierens, Harald Holte, Abdirashid Warsame, Ida M. Ikonomou, Junbai Wang, Wing C. Chan, and Jan Delabie
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Background Multiparameter flow cytometry allows the detection of minor monoclonal B-cell populations. Using this technique combined with morphology, we were struck by the presence of minor populations of small monoclonal B cells in bone marrows of patients with diffuse large B-cell lymphoma in routine diagnostic samples and performed a systematic retrospective study.Design and Methods Bone marrows of 165 patients with primary diffuse large B-cell lymphoma without histological evidence of concurrent non-Hodgkin’s lymphoma were studied by routine microscopy of trephines and smears, immunohistochemistry and multiparameter flow cytometry.Results Diffuse large B-cell lymphoma infiltration in marrows was documented in 11 of 165 patients. Morphological examination consistently revealed a higher tumor load than evidenced by flow cytometry. Of interest, only 3 of 119 patients with diffuse large B-cell lymphoma not otherwise specified, the largest subtype, showed marrow infiltration. By contrast, flow cytometry revealed a minor monoclonal B-cell population in 24 of 165 patients, none of whom showed diffuse large B-cell lymphoma infiltration by morphology. Of interest, morphological examination revealed the presence of small B cells in the marrows of those patients. Moreover, 11 of 39 (28.2%) of patients with diffuse large B-cell lymphoma not otherwise specified of ABC subtype and only 3 of 80 (3.7%) with the GCB subtype showed these monoclonal small B cells (P=0.0002). In addition 4 of 8 (50%), 4 of 15 (26.7%) and 2 of 3 (66.7%) patients with primary testicular, primary central nervous system and leg-type diffuse large B-cell lymphoma, respectively, showed monoclonal small B cells.Conclusions Bone marrow infiltration with diffuse large B-cell lymphoma in patients with diffuse large B-cell lymphoma not otherwise specified is rare at diagnosis. By contrast, a high number of diffuse large B-cell lymphoma not otherwise specified of the ABC subtype but not of GCB subtype is associated with monoclonal small B cells in the marrow. Whether these monoclonal small B cells are precursors of diffuse large B-cell lymphoma of the ABC type or arise in a common background that favors clonal B-cell expansion remains to be demonstrated.
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- 2010
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21. CIITA or RFX coding region loss of function mutations occur rarely in diffuse large B-cell lymphoma cases and cell lines with low levels of major histocompatibility complex class II expression
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Lisa M. Rimsza, Wing C. Chan, Randy D. Gascoyne, Elias Campo, Elaine S. Jaffe, Louis M. Staudt, Jan Delabie, Andreas Rosenwald, and Shawn P. Murphy
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2009
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22. Chromosomal alterations detected by comparative genomic hybridization in subgroups of gene expression-defined Burkitt’s lymphoma
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Itziar Salaverria, Andreas Zettl, Silvia Beà, Elena M. Hartmann, Sandeep S. Dave, George W. Wright, Evert-Jan Boerma, Philip M. Kluin, German Ott, Wing C. Chan, Dennis D. Weisenburger, Armando Lopez-Guillermo, Randy D. Gascoyne, Jan Delabie, Lisa M. Rimsza, Rita M. Braziel, Elaine S. Jaffe, Louis M. Staudt, Hans Konrad Müller-Hermelink, Elias Campo, Andreas Rosenwald, and for the Leukemia and Lymphoma Molecular Profiling Project (LLMPP)
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Background Burkitt’s lymphoma is an aggressive B-cell lymphoma characterized by typical morphological, immunophenotypic and molecular features. Gene expression profiling provided a molecular signature of Burkitt’s lymphoma, but also demonstrated that a subset of aggressive B-cell lymphomas not fulfilling the current World Health Organization criteria for the diagnosis of Burkitt’s lymphoma nonetheless show a molecular signature of Burkitt’s lymphoma (‘discrepant Burkitt’s lymphoma’). Given the different treatment of Burkitt’s lymphoma and diffuse large B-cell lymphomas we investigated molecular differences within gene expression-defined Burkitt’s lymphoma.Design and Methods We studied tumors from 51 Burkitt’s lymphoma patients, comprising 26 with classic Burkitt’s lymphoma, 17 with atypical Burkitt’s lymphoma and 8 with ‘discrepant Burkitt’s lymphoma’, by comparative genomic hybridization and gene expression profiling.Results Classic and atypical Burkitt’s lymphoma (excluding ‘discrepant Burkitt’s lymphoma’), in adult and pediatric cases do not differ in underlying genomic imbalances or gene expression suggesting that these subgroups are molecularly homogeneous. ‘Discrepant Burkitt’s lymphoma’, however, differ dramatically in the absolute number of alterations from classic/atypical Burkitt’s lymphoma and from diffuse large B-cell lymphoma. Moreover, this category includes lymphomas that carry both the t(14;18) and t(8;14) translocations and are clinically characterized by presentation in adult patients and an aggressive course.Conclusions Pediatric and adult Burkitt’s lymphoma are molecularly homogeneous, whereas ‘discrepant Burkitt’s lymphoma’ differ in underlying genetic and clinical features from typical/atypical Burkitt’s lymphoma. ‘Discrepant Burkitt’s lymphoma’ may therefore form a distinct genetic subgroup of aggressive B-cell lymphomas, which show poor response to multi-agent chemotherapy.
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- 2008
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23. The impact of a cancer diagnosis on nonfatal self-injury: a matched cohort study in Ontario
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Lena Nguyen, Julie Hallet, Antoine Eskander, Wing C. Chan, Christopher W. Noel, Alyson Mahar, and Rinku Sutradhar
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General Medicine - Published
- 2023
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24. Classification and diagnostic evaluation of nodal T- and NK-cell lymphomas
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Andrew L. Feldman, Camille Laurent, Marina Narbaitz, Shigeo Nakamura, Wing C. Chan, Laurence de Leval, and Philippe Gaulard
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Cell Biology ,General Medicine ,Molecular Biology ,Pathology and Forensic Medicine - Abstract
Nodal T- and NK-cell lymphomas are among the most frequent T-cell malignancies and most subtypes have aggressive clinical behavior. Evolving understanding of the biology and molecular characteristics of these lymphomas, as well as the development of new precision therapy approaches, underscores the importance of ongoing updates to the classification and diagnostic evaluation of this group of malignancies. Here, we discuss the classification of nodal T- and NK-cell lymphomas based on the 2022 International Consensus Classification of Mature Lymphoid Neoplasms (2022 ICC). Lymphomas of T-follicular helper cell origin are now grouped into a single entity, follicular helper T-cell lymphoma (TFH lymphoma), with three subtypes (angioimmunoblastic-type, follicular-type, and not otherwise specified), reflecting their common cellular origin and shared molecular and clinical characteristics. Classification of anaplastic large cell lymphoma (ALCL) remains essentially unchanged; DUSP22-rearranged cases are now considered a genetic subtype of ALK-negative ALCL. Primary nodal EBV-positive T-/NK-cell lymphoma is introduced as a new provisional entity; these cases were previously considered a variant of peripheral T-cell lymphoma, not otherwise specified (PTCL, NOS). PTCL, NOS remains a diagnosis of exclusion, with evolving molecular data indicating the presence of distinct subgroups, including PTCL-TBX21, PTCL-GATA3, and EBV-negative cytotoxic PTCLs. We also discuss diagnostic strategies to facilitate the 2022 ICC classification among nodal T- and NK-cell lymphomas and the distinction from nodal involvement by extranodal neoplasms.
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- 2022
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25. Incidence of psychiatric illness in patients with neuroendocrine tumors: a comparative population-based analysis
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Julie Hallet, Elie Isenberg-Grzeda, Calvin H. L. Law, Victoria Barabash, Jesse Zuckerman, Simron Singh, Sten D. Myrehaug, Angela Assal, Wing C. Chan, Natalie G. Coburn, and Alyson L. Mahar
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Oncology - Published
- 2022
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26. Diagnostic approaches and future directions in Burkitt lymphoma and high-grade B-cell lymphoma
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Rebecca L. King, Eric D. Hsi, Wing C. Chan, Miguel A. Piris, James R. Cook, David W. Scott, and Steven H. Swerdlow
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Cell Biology ,General Medicine ,Molecular Biology ,Pathology and Forensic Medicine - Published
- 2022
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27. Genetic characterization and drug sensitivity study of newly derived HGBL double/triple-hit lymphoma cell lines
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Jibin Zhang, Tingting Wang, Kunal Shetty, Serhan Alkan, Senlin Xu, Qiang Gong, Xuxiang Liu, Yuping Li, Zunsong Hu, Wendong Huang, Hans-Guido Wendel, Alex F. Herrera, Raju K. Pillai, Joo Y. Song, and Wing C. Chan
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Humans ,Lymphoma, Large B-Cell, Diffuse ,Hematology ,Cell Line - Published
- 2022
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28. Development and Validation of a Machine Learning Algorithm Predicting Emergency Department Use and Unplanned Hospitalization in Patients With Head and Neck Cancer
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Christopher W. Noel, Rinku Sutradhar, Lesley Gotlib Conn, David Forner, Wing C. Chan, Rui Fu, Julie Hallet, Natalie G. Coburn, and Antoine Eskander
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Hospitalization ,Machine Learning ,Ontario ,Otorhinolaryngology ,Head and Neck Neoplasms ,Humans ,Surgery ,Middle Aged ,Emergency Service, Hospital ,Algorithms ,Original Investigation - Abstract
ImportancePatient-reported symptom burden was recently found to be associated with emergency department use and unplanned hospitalization (ED/Hosp) in patients with head and neck cancer. It was hypothesized that symptom scores could be combined with administrative health data to accurately risk stratify patients.ObjectiveTo develop and validate a machine learning approach to predict future ED/Hosp in patients with head and neck cancer.Design, Setting, and ParticipantsThis was a population-based predictive modeling study of patients in Ontario, Canada, diagnosed with head and neck cancer from January 2007 through March 2018. All outpatient clinical encounters were identified. Edmonton Symptom Assessment System (ESAS) scores and clinical and demographic factors were abstracted. Training and test cohorts were randomly generated in a 4:1 ratio. Various machine learning algorithms were explored, including (1) logistic regression using a least absolute shrinkage and selection operator, (2) random forest, (3) gradient boosting machine, (4) k-nearest neighbors, and (5) an artificial neural network. Data analysis was performed from September 2021 to January 2022.Main Outcomes and MeasuresThe main outcome was any 14-day ED/Hosp event following symptom assessment. The performance of each model was assessed on the test cohort using the area under the receiver operator characteristic (AUROC) curve and calibration plots. Shapley values were used to identify the variables with greatest contribution to the model.ResultsThe training cohort consisted of 9409 patients (mean [SD] age, 63.3 [10.9] years) undergoing 59 089 symptom assessments (80%). The remaining 2352 patients (mean [SD] age, 63.3 [11] years) and 14 193 symptom assessments were set aside as the test cohort (20%). Several models had high predictive accuracy, particularly the gradient boosting machine (validation AUROC, 0.80 [95% CI, 0.78-0.81]). A Youden-based cutoff corresponded to a validation sensitivity of 0.77 and specificity of 0.66. Patient-reported symptom scores were consistently identified as being the most predictive features within models. A second model built only with symptom severity data had an AUROC of 0.72 (95% CI, 0.70-0.74).Conclusions and RelevanceIn this study, machine learning approaches predicted with a high degree of accuracy ED/Hosp in patients with head and neck cancer. These tools could be used to accurately risk stratify patients and may help direct targeted intervention.
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- 2023
29. Prevalence and Association of Frailty with Clinical Outcomes in Myeloproliferative Neoplasms: A Population-Based Study
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Aniket Bankar, Wing C. Chan, Ning Liu, Matthew C Cheung, Shabbir MH Alibhai, and Vikas Gupta
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Hematology - Abstract
Clinical implications of frailty in myeloproliferative neoplasms (MPN)- essential thrombocythemia (ET), polycythemia vera (PV), myelofibrosis (MF) is unknown. In this population-based study, all incident cases of MPN from Ontario cancer registry between 2004-2019 (N=10,336, ET=5,108; PV=3,843; MF=1,385) and their matched controls (for age, sex, residence, income) in 1:4 ratio were included. Baseline frailty measured using Johns Hopkins Adjusted Clinical Groups frailty indicator and McIsaac's frailty index (mFI), categorized as fit, prefrail, or frail if mFI 0.20) was significantly higher in ET, PV and MF compared to matched controls [standardized mean difference 0.27, 0.27 and 0.28]. Over 23%, 20% and 34% patients with ET, PV and MF were frail or prefrail despite younger age (
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- 2023
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30. Genomic profiling identifies distinct genetic subtypes in extra-nodal natural killer/T-cell lymphoma
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Gehong Dong, Xuxiang Liu, Lifu Wang, Wenjuan Yin, Alyssa Bouska, Qiang Gong, Kunal Shetty, Lu Chen, Sunandini Sharma, Jibin Zhang, Carmen Lome-Maldonado, Leticia Quintanilla-Martinez, Yuping Li, Joo Y. Song, Wenyan Zhang, Yunfei Shi, Jinhui Wang, Lingbo Kong, Xiwei Wu, Jingwen Wang, Hong-gang Liu, Lingfei Kong, Wenyong Sun, Weiping Liu, Lili Wang, Timothy W. McKeithan, Javeed Iqbal, and Wing C. Chan
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Killer Cells, Natural ,Lymphoma, Extranodal NK-T-Cell ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,Cancer Research ,Oncology ,Humans ,Lymphoma, T-Cell, Peripheral ,Genomics ,Hematology ,Genetic Profile - Abstract
Extra-nodal NK/T-cell lymphoma, nasal type (ENKTCL) is a highly aggressive Epstein-Barr virus associated lymphoma, typically presenting in the nasal and paranasal areas. We assembled a large series of ENKTCL (n = 209) for comprehensive genomic analysis and correlative clinical study. The International Lymphoma Prognostic Index (IPI), site of disease, stage, lymphadenopathy, and hepatomegaly were associated with overall survival. Genetic analysis revealed frequent oncogenic activation of the JAK/STAT3 pathway and alterations in tumor suppressor genes (TSGs) and genes associated with epigenomic regulation. Integrated genomic analysis including recurrent mutations and genomic copy number alterations using consensus clustering identified seven distinct genetic clusters that were associated with different clinical outcomes, thus constituting previously unrecognized risk groups. The genetic profiles of ENTKCLs from Asian and Hispanic ethnic groups showed striking similarity, indicating shared pathogenetic mechanism and tumor evolution. Interestingly, we discovered a novel functional cooperation between activating STAT3 mutations and loss of the TSG, PRDM1, in promoting NK-cell growth and survival. This study provides a genetic roadmap for further analysis and facilitates investigation of actionable therapeutic opportunities in this aggressive lymphoma.
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- 2022
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31. MiRNA-363-3p/DUSP10/JNK axis mediates chemoresistance by enhancing DNA damage repair in diffuse large B-cell lymphoma
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Wenping Zhou, Yuanlin Xu, Jiuyang Zhang, Peipei Zhang, Zhihua Yao, Zheng Yan, Haiying Wang, Junfeng Chu, Shuna Yao, Shuang Zhao, Shujun Yang, Yongjun Guo, Jinxin Miao, Kangdong Liu, Wing C. Chan, Qingxin Xia, and Yanyan Liu
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Cancer Research ,DNA End-Joining Repair ,DNA Repair ,JNK Mitogen-Activated Protein Kinases ,Hematology ,Mice ,MicroRNAs ,Oncology ,Doxorubicin ,Drug Resistance, Neoplasm ,Cell Line, Tumor ,Animals ,Dual-Specificity Phosphatases ,Humans ,Mitogen-Activated Protein Kinase Phosphatases ,Lymphoma, Large B-Cell, Diffuse ,DNA Damage - Abstract
Anthracycline-based chemotherapy resistance represents a major challenge in diffuse large B-cell lymphoma (DLBCL). MiRNA and gene expression profiles (n = 47) were determined to uncover potential chemoresistance mechanisms and therapeutic approaches. An independent correlation between high expression of miRNA-363-3p and chemoresistance was observed and validated in a larger cohort (n = 106). MiRNA-363-3p was shown to reduce doxorubicin-induced apoptosis and tumor shrinkage in in vitro and in vivo experiments by ectopic expression and CRISPR/Cas9-mediated knockout in DLBCL cell lines. DNA methylation was found to participate in transcriptional regulation of miRNA-363-3p. Further investigation revealed that dual specificity phosphatase 10 (DUSP10) is a target of miRNA-363-3p and its suppression promotes the phosphorylation of c-Jun N-terminal kinase (JNK). The miRNA-363-3p/DUSP10/JNK axis was predominantly associated with negative regulation of homologous recombination (HR) and DNA repair pathways. Ectopic expression of miRNA-363-3p more effectively repaired doxorubicin-induced double-strand break (DSB) while enhancing non-homologous end joining repair and reducing HR repair. Targeting JNK and poly (ADP-ribose) polymerase 1 significantly inhibited doxorubicin-induced DSB repair, increased doxorubicin-induced cell apoptosis and tumor shrinkage, and improved the survival of tumor-bearing mice. In conclusion, the miRNA-363-3p/DUSP10/JNK axis is a novel chemoresistance mechanism in DLBCL that may be reversed by targeted therapy.
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- 2022
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32. Impact of care by gynecologic oncologists on primary ovarian cancer survival: A population-based study
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Geneviève, Bouchard-Fortier, Lilian T, Gien, Rinku, Sutradhar, Wing C, Chan, Monika K, Krzyzanowska, Shiru Lucy, Liu, and Sarah E, Ferguson
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Oncologists ,Ovarian Neoplasms ,Oncology ,Multivariate Analysis ,Humans ,Obstetrics and Gynecology ,Female ,Carcinoma, Ovarian Epithelial ,Proportional Hazards Models - Abstract
Timely treatment of epithelial ovarian cancer (EOC) by gynecologic oncologists (GOs) with a combination of surgery and/or chemotherapy has been advocated. Nonetheless, some patients are not assessed by GOs prior to starting their treatment or have surgery by non-GOs. This study aims to determine trends over time in non-mucinous EOC care and to evaluate the impact of care on survival.Using province-wide administrative data, patients diagnosed with non-mucinous EOC between 2007 and 2018 were identified. Multivariate Cox proportional hazards regression models were used to evaluate the impact of GO assessment prior to initiating treatment or having surgery done by a non-GO on mortality.A total of 10,086 EOC patients were included between 2007 and 2018. During the study period, there was an 8% increase in GO assessment (79% in 2007 to 87% in 2018-19, p ≤ 0.001) and a 19% increase in surgeries performed by GOs (69% in 2007 to 88% in 2018-19, p ≤ 0.001). On multivariate analysis, there was an increased hazard of all-cause mortality for patients not assessed by GOs before first treatment (Hazard ratio (HR): 1.61; 95% CI 1.46-1.79). There was an increased hazard of all-cause mortality if ovarian cancer surgery was performed by non-GOs (HR 2.03; 95% CI 1.80-2.30).Assessment by GO before starting initial treatment is associated with improved survival in women with non-mucinous EOC as the type of surgeon performing primary ovarian cancer surgery. Assessment by GO for all patients with new or suspected ovarian cancer diagnosis before initiation of primary treatment should be advocated.
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- 2022
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33. Supplementary Fig. 4 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 149K, RNF31 peptides internalized equivalently in ABC DLBCL cells
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34. Supplementary Tables S1 - S10 from The Genetic Basis of Hepatosplenic T-cell Lymphoma
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Sandeep S. Davé, David B. Dunson, Jyotishka Datta, Yuan Zhuang, Shawn Levy, Cassandra Love, Anupama Reddy, Deepthi Rajagopalan, Jenny Zhang, Guojie Li, Nicholas S. Davis, Randy D. Gascoyne, Sandra Basic-Kinda, Igor Aurer, John R. Goodlad, William W. L. Choi, Gopesh Srivastava, Rex K.H. Au-Yeung, Amy Chadburn, Andrew M. Evens, Monika Pilichowska, Pierre Sujobert, Anne Moreau, Marie Parrens, Lucile Baseggio, Mayur Parihar, Anne W. Beaven, Christopher R. Flowers, Leon Bernal-Mizrachi, Steven Horwitz, Neha Mehta-Shah, Wing C. Chan, Dennis Weisenburger, Lawrence Low, Eric D. Hsi, Sarah L. Ondrejka, Yuri Fedoriw, Kristy L. Richards, Jennifer R. Chapman-Fredricks, Izidore S. Lossos, Magdalena B. Czader, Virginie Fataccioli, Marie Helene Delfau-Larue, Karim Belhadj, Javeed Iqbal, Tayla Heavican, Liqiang Xi, Stefania Pittaluga, Elaine S. Jaffe, Mark Raffeld, Alina Nicolae, Laurence De Leval, Marion Travert, Philippe Gaulard, Andrea B. Moffitt, and Matthew McKinney
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Supplementary Table S1. Sanger validated variants. Supplementary Table S2. Mutations in HSTL driver genes. Supplementary Table S3. Other mutations identified by exome sequencing. Supplementary Table S4. Copy number of HSTL patients and cell lines. Supplementary Table S5. Clinical and pathological characteristics of HSTL patients. Supplementary Tables S6, S7. Comparison to HSTL clinical data in the literature. Supplementary Table S8. Mutational frequencies in other lymphomas. Supplementary Table S9. HSTL mutations in other lymphoma driver genes. Supplementary Table S10. Gene set enrichment analysis of DERL2 SETD2 shRNA.
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35. Data from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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Constitutive activation of NF-κB is a hallmark of the activated B cell–like (ABC) subtype of diffuse large B-cell lymphoma (DLBCL), owing to upstream signals from the B-cell receptor (BCR) and MYD88 pathways. The linear polyubiquitin chain assembly complex (LUBAC) attaches linear polyubiquitin chains to IκB kinase-γ, a necessary event in some pathways that engage NF-κB. Two germline polymorphisms affecting the LUBAC subunit RNF31 are rare among healthy individuals (∼1%) but enriched in ABC DLBCL (7.8%). These polymorphisms alter RNF31 α-helices that mediate binding to the LUBAC subunit RBCK1, thereby increasing RNF31–RBCK1 association, LUBAC enzymatic activity, and NF-κB engagement. In the BCR pathway, LUBAC associates with the CARD11–MALT1–BCL10 adapter complex and is required for ABC DLBCL viability. A stapled RNF31 α-helical peptide based on the ABC DLBCL–associated Q622L polymorphism inhibited RNF31–RBCK1 binding, decreased NF-κB activation, and killed ABC DLBCL cells, credentialing this protein–protein interface as a therapeutic target.Significance: We provide genetic, biochemical, and functional evidence that the LUBAC ubiquitin ligase is a therapeutic target in ABC DLBCL, the DLBCL subtype that is most refractory to current therapy. More generally, our findings highlight the role of rare germline-encoded protein variants in cancer pathogenesis. Cancer Discov; 4(4); 480–93. ©2014 AACR.See related commentary by Grumati and Dikic, p. 394This article is highlighted in the In This Issue feature, p. 377
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36. Supplementary Table 2 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 42K, Co-occurrence of RNF31 SNPs with other genetic lesions in ABC DLBCL cases
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37. Supplementary Table 1 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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Supplementary Table 1 PDF file 53K, Enrichment of two rare SNPs among ABC DLBCL tumors
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38. Supplementary Fig. 3 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 124K, Involvement of LUBAC in CBM complex mediated NF-kappaB activation, related to main figure 3
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39. Supplementary Methods, Figures S1 - S9 from The Genetic Basis of Hepatosplenic T-cell Lymphoma
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Sandeep S. Davé, David B. Dunson, Jyotishka Datta, Yuan Zhuang, Shawn Levy, Cassandra Love, Anupama Reddy, Deepthi Rajagopalan, Jenny Zhang, Guojie Li, Nicholas S. Davis, Randy D. Gascoyne, Sandra Basic-Kinda, Igor Aurer, John R. Goodlad, William W. L. Choi, Gopesh Srivastava, Rex K.H. Au-Yeung, Amy Chadburn, Andrew M. Evens, Monika Pilichowska, Pierre Sujobert, Anne Moreau, Marie Parrens, Lucile Baseggio, Mayur Parihar, Anne W. Beaven, Christopher R. Flowers, Leon Bernal-Mizrachi, Steven Horwitz, Neha Mehta-Shah, Wing C. Chan, Dennis Weisenburger, Lawrence Low, Eric D. Hsi, Sarah L. Ondrejka, Yuri Fedoriw, Kristy L. Richards, Jennifer R. Chapman-Fredricks, Izidore S. Lossos, Magdalena B. Czader, Virginie Fataccioli, Marie Helene Delfau-Larue, Karim Belhadj, Javeed Iqbal, Tayla Heavican, Liqiang Xi, Stefania Pittaluga, Elaine S. Jaffe, Mark Raffeld, Alina Nicolae, Laurence De Leval, Marion Travert, Philippe Gaulard, Andrea B. Moffitt, and Matthew McKinney
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Supplementary Figure S1. Sanger sequencing chromatograms. Supplementary Figure S2. Cancer cell fraction for driver genes. Supplementary Figure S3. Ideogram with chromosome 7 alterations. Supplementary Figure S4. Examples of Exome Copy Number. Supplementary Figure S5. Exploratory Kaplan-Meier plots for clinical covariates. Supplementary Figure S6. Exploratory Kaplan-Meier plots for molecular covariates. Supplementary Figure S7. Sanger and exome sequencing validation of SETD2 biallelic mutation in one HSTL case. Supplementary Figure S8. SETD2 expression in mutant vs. wildtype cases. Supplementary Figure S9. Mutual exclusivity of STAT5B, PIK3CD, and STAT3 mutations.
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40. Supplementary Fig. 2 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 73K, Constitutive linear ubiquitination of NEMO in ABC comparing to GCB DLBCL cells
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41. Supplementary Fig. 5 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 132K, Specificity of RNF31 stapled peptides in ABC DLBCL
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42. Supplementary Fig. 1 from Essential Role of the Linear Ubiquitin Chain Assembly Complex in Lymphoma Revealed by Rare Germline Polymorphisms
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Louis M. Staudt, Federico Bernal, Kazuhiro Iwai, Michael J. Kruhlak, Adrian Wiestner, Wing C. Chan, Dennis D. Weisenburger, James R. Cook, Raymond R. Tubbs, Rita M. Braziel, Erlend B. Smeland, Jan Delabie, Elaine S. Jaffe, Elias Campo, Lisa M. Rimsza, Joseph M. Connors, Randy D. Gascoyne, German Ott, Andreas Rosenwald, Weihong Xu, Yandan Yang, Hong Zhao, George W. Wright, Michele Ceribelli, Wenming Xiao, Amanda Whiting, Joseph Mitala, Roland Schmitz, and Yibin Yang
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PDF file 283K, RNF31 DNA sequence electropherograms for the region corresponding to the single nucleotide polymorphisms (SNPs)
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- 2023
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43. Data from EZH2 Mutations in Follicular Lymphoma from Different Ethnic Groups and Associated Gene Expression Alterations
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Wing C. Chan, Timothy C. Greiner, Weiwei Zhang, Ruian Wang, Donglan Luo, Wah Cheuk, Yi Pan, Bin Meng, Kai Fu, Timothy McKeithan, Javeed Iqbal, John K.C. Chan, and Shuangping Guo
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Purpose: Gain-of-function mutations of enhancer of Zeste homolog 2 (EZH2) occur frequently in diffuse large B-cell lymphomas and in follicular lymphomas. However, the frequency of EZH2 mutation in Chinese follicular lymphomas and the potential targets affected by this mutation are unknown.Experimental Design: We determined EZH2 codon 641 mutations in Chinese follicular lymphomas (n = 124) and compared them with Western follicular lymphomas (n = 70) using a sensitive pyrosequencing assay. Gene expression profiling (GEP) was performed to determine differential gene expression between the mutated versus unmutated subgroups, and selected genes were validated using immunohistochemistry.Results: Our results showed similar frequencies of EZH2 codon 641 mutations in Chinese and Western follicular lymphoma cohorts (16.9% vs. 18.6%, χ2 test, P = 0.773), including all five reported mutation variants. We observed significant association of EZH2 mutation with low morphologic grade follicular lymphomas (grade 1–2, 23.6% vs. grade 3, 7.7%, χ2 test, P = 0.02). EZH2 mutations also showed significant association with BCL2 rearrangement in the Chinese cohort (26.8% vs. 8.8%, χ2 test, P = 0.008) and combined cohorts (26.3% vs. 9.1%, χ2 test, P = 0.002). GEP analysis identified several genes, including TCF4, FOXP1, TCL1A, BIK, and RASSF6P, with significantly lower mRNA expression (P < 0.01) in mutated cases, and the potential target TCL1A showed consistent results at the protein level.Conclusion: Similar prevalence of EZH2 mutation in two ethnic groups suggests shared pathogenetic mechanisms. The much lower frequency of EZH2 mutation in cases without BCL2 translocation suggests a different pattern of evolution of this subtype of follicular lymphoma. GEP studies showed a set of differentially expressed genes and suggested that EZH2 mutation may help to lock the tumor cells at the germinal center stage of differentiation. Clin Cancer Res; 20(12); 3078–86. ©2014 AACR.
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- 2023
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44. Supplementary Table 2 from EZH2 Mutations in Follicular Lymphoma from Different Ethnic Groups and Associated Gene Expression Alterations
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Wing C. Chan, Timothy C. Greiner, Weiwei Zhang, Ruian Wang, Donglan Luo, Wah Cheuk, Yi Pan, Bin Meng, Kai Fu, Timothy McKeithan, Javeed Iqbal, John K.C. Chan, and Shuangping Guo
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PDF file - 17KB, Summary of EZH2 mutation studies in FL.
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- 2023
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45. CTLA4 is epressed in human B cell lymphoma and multiple myeloma cells from CTLA4 Promotes Tyk2-STAT3–Dependent B-cell Oncogenicity
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Hua Yu, Thomas Blankenstein, Larry Kwak, Stephen Forman, Lihua E. Budde, John Williams, Kurt Jenkins, Wenzhao Li, Ronja Mülfarth, Thomas Look, Chanyu Yue, Heehyoung Lee, Wing C. Chan, Joo Y. Song, Toshikage Nagao, Christoph Lahtz, and Andreas Herrmann
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Suppl. Fig. S1 showing CTLA4 expression and CD86 cellular internalization by human BCL and human MM cells acquired by flow cytometry.
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- 2023
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46. Supplemental Figures 1-12 from Global Promoter Methylation Analysis Reveals Novel Candidate Tumor Suppressor Genes in Natural Killer Cell Lymphoma
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Wing C. Chan, Timothy W. McKeithan, Philippe Gaulard, Javeed Iqbal, Alyssa Bouska, Qiang Gong, Huimin Geng, David Klinkebiel, Bei Jiang, Xiaozhou Hu, and Can Küçük
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Supplemental Figures 1-12. Fig.1: The distribution of mappable HpaII sites(MSCC cut sites) and the distribution of MSCC reads in normal NK cells; Fig.2: Mean log2 cut counts per site for promoters and bodies of genes with differing normal NK expression levels; Fig.3: Correlation of promoter hypermethylation and gene expression of candidate genes in malignant NK samples; Fig.4: Genome-wide comparisons of MSCC and RRBS methodologies on detection of promoter methylation levels; Fig.5: Hypermethylated candidate tumor suppressor genes have low expression in malignant NK-cell lines.; Fig.6: BIM protein is silenced in NK-cell lines; Fig.7: Comparison of MSCC with locus-specific pyrosequencing; Fig.8: Pyrosequencing analysis of BIM, ASNS and DAPK1 promoters in NK-cell lines and normal NK-cells cross-validates MSCC results; Fig.9: Validation of BIM and ASNS promoter methylation with locus-specific q-MSP in malignant NK samples; Fig.10: BIM protein is induced after Decitabine treatment; Fig.11: Ectopic expression of BIM in NKYS cells 2 days post-transduction; Fig.12: Ectopic expression of SOCS6 in NK-cell lines
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- 2023
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47. CTLA4 blockade induces T cell activation from CTLA4 Promotes Tyk2-STAT3–Dependent B-cell Oncogenicity
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Hua Yu, Thomas Blankenstein, Larry Kwak, Stephen Forman, Lihua E. Budde, John Williams, Kurt Jenkins, Wenzhao Li, Ronja Mülfarth, Thomas Look, Chanyu Yue, Heehyoung Lee, Wing C. Chan, Joo Y. Song, Toshikage Nagao, Christoph Lahtz, and Andreas Herrmann
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Suppl. Fig. S2 showing improved Th1 and Th2 maturation and increased CD3 T cell activation upon CTLA4 blockade in vivo.
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- 2023
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48. Figure S1 from L-Type Cav 1.2 Calcium Channel-α-1C Regulates Response to Rituximab in Diffuse Large B-Cell Lymphoma
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Yan-Yan Liu, Javeed Iqbal, Wing C. Chan, Timothy W. McKeithan, Lynette M. Smith, Yong-Jun Guo, Zi-Gang Dong, Kang-Dong Liu, Shu-Jun Yang, Jie Ma, Qing-Xin Xia, Waseem Lone, Cheng Wang, Shu-Na Yao, Jun-Feng Chu, Zhi-Hua Yao, Jia-Yu Yu, Wen-Ping Zhou, Pei-Pei Zhang, and Jiu-Yang Zhang
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Figure S1 shows the design of regulating the expression of miRNA-363.(A) The construction of FUA based miRNA-363 lentiviral vector; (B) The scheme of miRNA-363 knockout using CRISPR/Cas9 system.
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- 2023
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49. Data from Inhibition of MDR1 Overcomes Resistance to Brentuximab Vedotin in Hodgkin Lymphoma
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Edward M. Newman, Steven T. Rosen, Larry W. Kwak, Stephen J. Forman, Wing C. Chan, Xiwei Wu, Shu Tao, Joo Y. Song, Shuhua Yi, Leslie Popplewell, Matthew Mei, Sandrine Puverel, Vu N. Ngo, Timothy W. Synold, Yuming Guo, Jun Wu, Lu Chen, Jessie Hou, Alex F. Herrera, and Robert Chen
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Purpose:In classical Hodgkin lymphoma, the malignant Reed–Sternberg cells express the cell surface marker CD30. Brentuximab vedotin is an antibody–drug conjugate (ADC) that selectively delivers a potent cytotoxic agent, monomethyl auristatin E (MMAE), to CD30-positive cells. Although brentuximab vedotin elicits a high response rate (75%) in relapsed/refractory Hodgkin lymphoma, most patients who respond to brentuximab vedotin eventually develop resistance.Patients and Methods:We developed two brentuximab vedotin–resistant Hodgkin lymphoma cell line models using a pulsatile approach and observed that resistance to brentuximab vedotin is associated with an upregulation of multidrug resistance-1 (MDR1). We then conducted a phase I trial combining brentuximab vedotin and cyclosporine A (CsA) in patients with relapsed/refractory Hodgkin lymphoma.Results:Here, we show that competitive inhibition of MDR1 restored sensitivity to brentuximab vedotin in our brentuximab vedotin–resistant cell lines by increasing intracellular MMAE levels, and potentiated brentuximab vedotin activity in brentuximab vedotin–resistant Hodgkin lymphoma tumors in a human xenograft mouse model. In our phase I trial, the combination of brentuximab vedotin and CsA was tolerable and produced an overall and complete response rate of 75% and 42% in a population of patients who were nearly all refractory to brentuximab vedotin.Conclusions:This study may provide a new therapeutic strategy to combat brentuximab vedotin resistance in Hodgkin lymphoma. This is the first study reporting an effect of multidrug resistance modulation on the therapeutic activity of an ADC in humans. The expansion phase of the trial is ongoing and enrolling patients who are refractory to brentuximab vedotin to confirm clinical activity in this population with unmet need.
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- 2023
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50. Table.S1 from Genome-Wide miRNA Expression Profiling of Molecular Subgroups of Peripheral T-cell Lymphoma
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Javeed Iqbal, Wing C. Chan, Julie M. Vose, Stefano Pileri, Giovanna Motta, Federica Melle, Dennis D. Weisenburger, Timothy C. Greiner, Timothy W. McKeithan, Lisa M. Rimsza, Andrew L. Feldman, James R. Cook, German Ott, Andreas Rosenwald, Kerry J. Savage, Graham W. Slack, Choon Kiat Ong, Soon Thye Lim, Jiayu Yu, Tayla B. Heavican, Tyler A. Herek, Mallick Saumyaranjan, Catalina Amador, Sunandini Sharma, Alyssa Bouska, and Waseem Lone
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Table S1. Patient Charactertistics and their mi-EP platform type
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- 2023
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