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We consider the computational complexity of winning this turn (mate-in-1 or "finding lethal") in Hearthstone as well as several other single turn puzzle types introduced in the Boomsday Lab expansion. We consider three natural generalizations of Hearthstone (in which hand size, board size, and deck size scale) and prove the various puzzle types in each generalization NP-hard., Comment: 17 pages, 4 appendix, 1 figure

We show that, unlike the Yao-Yao graph $YY_6$, the Theta-Theta graph $\Theta\Theta_6$ defined by six cones is a spanner for sets of points in convex position. We also show that, for sets of points in non-convex position, the spanning ratio of $\Theta\Theta_6$ is unbounded., Comment: 13 pages, 9 figures

We consider the computational complexity of reconfiguration problems, in which one is given two combinatorial configurations satisfying some constraints, and is asked to transform one into the other using elementary transformations, while satisfying the constraints at all times. Such problems appear naturally in many contexts, such as model checking, motion planning, enumeration and sampling, and recreational mathematics. We provide hardness results for problems in this family, in which the constraints and operations are particularly simple. More precisely, we prove the PSPACE-completeness of the following decision problems: $\bullet$ Given two satisfying assignments to a planar monotone instance of Not-All-Equal 3-SAT, can one assignment be transformed into the other by single variable `flips' (assignment changes), preserving satisfiability at every step? $\bullet$ Given two subsets of a set S of integers with the same sum, can one subset be transformed into the other by adding or removing at most three elements of S at a time, such that the intermediate subsets also have the same sum? $\bullet$ Given two points in $\{0,1\}^n$ contained in a polytope P specified by a constant number of linear inequalities, is there a path in the n-hypercube connecting the two points and contained in P? These problems can be interpreted as reconfiguration analogues of standard problems in NP. Interestingly, the instances of the NP problems that appear as input to the reconfiguration problems in our reductions can be shown to lie in P. In particular, the elements of S and the coefficients of the inequalities defining P can be restricted to have logarithmic bit-length., Comment: An abstract version will appear in COCOON 2018

We prove the unique assembly and unique shape verification problems, benchmark measures of self-assembly model power, are $\mathrm{coNP}^{\mathrm{NP}}$-hard and contained in $\mathrm{PSPACE}$ (and in $\mathrm{\Pi}^\mathrm{P}_{2s}$ for staged systems with $s$ stages). En route, we prove that unique shape verification problem in the 2HAM is $\mathrm{coNP}^{\mathrm{NP}}$-complete., Comment: An abstract version will appear in the proceedings of UCNC 2017

We characterize the complexity of the PATS problem for patterns of fixed height and color count in variants of the model where seed glues are either chosen or fixed and identical (so-called non-uniform and uniform variants). We prove that both variants are NP-complete for patterns of height 2 or more and admit O(n)-time algorithms for patterns of height 1. We also prove that if the height and number of colors in the pattern is fixed, the non-uniform variant admits a O(n)-time algorithm while the uniform variant remains NP-complete. The NP-completeness results use a new reduction from a constrained version of a problem on finite state transducers., Comment: An abstract version appears in the proceedings of CIAA 2016

An example of a nonspecific molecular bond is the affinity of any positive charge for any negative charge (like-unlike), or of nonpolar material for itself when in aqueous solution (like-like). This contrasts specific bonds such as the affinity of the DNA base A for T, but not for C, G, or another A. Recent experimental breakthroughs in DNA nanotechnology demonstrate that a particular nonspecific like-like bond ("blunt-end DNA stacking" that occurs between the ends of any pair of DNA double-helices) can be used to create specific "macrobonds" by careful geometric arrangement of many nonspecific blunt ends, motivating the need for sets of macrobonds that are orthogonal: two macrobonds not intended to bind should have relatively low binding strength, even when misaligned. To address this need, we introduce geometric orthogonal codes that abstractly model the engineered DNA macrobonds as two-dimensional binary codewords. While motivated by completely different applications, geometric orthogonal codes share similar features to the optical orthogonal codes studied by Chung, Salehi, and Wei. The main technical difference is the importance of 2D geometry in defining codeword orthogonality., Comment: Accepted to appear in IEEE Transactions on Molecular, Biological, and Multi-Scale Communications

Dipole words are sequences of magnetic dipoles, in which alike elements repel and opposite elements attract. Magnetic dipoles contrast with more general sets of bonding types, called glues, in which pairwise bonding strength is specified by a glue function. We prove that every glue function $g$ has a set of dipole words, called a dipole code, that attractively encodes $g$: the pairwise attractions (positive or non-positive bond strength) between the words are identical to those of $g$. Moreover, we give such word sets of asymptotically optimal length. Similar results are obtained for a commonly used subclass of glue functions., Comment: To appear in Theoretical Computer Science

We analyze the number of tile types $t$, bins $b$, and stages necessary to assemble $n \times n$ squares and scaled shapes in the staged tile assembly model. For $n \times n$ squares, we prove $\mathcal{O}(\frac{\log{n} - tb - t\log t}{b^2} + \frac{\log \log b}{\log t})$ stages suffice and $\Omega(\frac{\log{n} - tb - t\log t}{b^2})$ are necessary for almost all $n$. For shapes $S$ with Kolmogorov complexity $K(S)$, we prove $\mathcal{O}(\frac{K(S) - tb - t\log t}{b^2} + \frac{\log \log b}{\log t})$ stages suffice and $\Omega(\frac{K(S) - tb - t\log t}{b^2})$ are necessary to assemble a scaled version of $S$, for almost all $S$. We obtain similarly tight bounds when the more powerful flexible glues are permitted., Comment: Abstract version appeared in ESA 2016

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this model, this constant temperature requirement is replaced by an nondecreasing temperature function $\tau : \mathbb{N} \rightarrow \mathbb{N}$ that depends on the size of the smaller of the two halves. This generalization allows supertiles to become unstable and break apart, and captures the increased forces that large structures may place on the bonds holding them together. We demonstrate the power of this model in two ways. First, we give fixed tile sets that assemble constant-height rectangles and squares of arbitrary input size given an appropriate temperature function. Second, we prove that deciding whether a supertile is stable is coNP-complete. Both results contrast with known results for fixed temperature., Comment: In proceedings of ISAAC 2015

A plane tiling consisting of congruent copies of a shape is isohedral provided that for any pair of copies, there exists a symmetry of the tiling mapping one copy to the other. We give a $O(n\log^2{n})$-time algorithm for deciding if a polyomino with $n$ edges can tile the plane isohedrally. This improves on the $O(n^{18})$-time algorithm of Keating and Vince and generalizes recent work by Brlek, Proven\c{c}al, F\'{e}dou, and the second author., Comment: An abstract version appears in the proceedings of SOCG 2016

We give a $O(n)$-time algorithm for determining whether translations of a polyomino with $n$ edges can tile the plane. The algorithm is also a $O(n)$-time algorithm for enumerating all such tilings that are also regular, and we prove that at most $\Theta(n)$ such tilings exist., Comment: In proceedings of ISAAC 2015

We prove several limits on the behavior of a model of self-assembling particles introduced by Dabby and Chen (SODA 2013), called insertion systems, where monomers insert themselves into the middle of a growing linear polymer. First, we prove that the expressive power of these systems is equal to context-free grammars, answering a question posed by Dabby and Chen. Second, we give tight bounds on the maximum length and minimum expected time of constructed polymers in systems of three increasingly restricted classes. We prove that systems of $k$ monomer types can deterministically construct polymers of length $n = 2^{\Theta(k^{3/2})}$ in $O(\log^{5/3}(n))$ expected time. We also prove that if non-deterministic construction of a finite number of polymers is permitted, then the expected construction time can be reduced to $O(\log^{3/2}(n))$ at the trade-off of decreasing the length to $2^{\Theta(k)}$. If the system is allowed to construct an infinite number of polymers, then constructing polymers of unbounded length in $O(\log{n})$ expected time is possible. We follow these positive results with a set of lower bounds proving that these are the best possible polymer lengths and expected construction times., Comment: A subset of the results appear in arXiv:1401.0359 and the proceedings of ESA 2014

Can folding a piece of paper flat make it larger? We explore whether a shape $S$ must be scaled to cover a flat-folded copy of itself. We consider both single folds and arbitrary folds (continuous piecewise isometries $S\rightarrow R^2$). The underlying problem is motivated by computational origami, and is related to other covering and fixturing problems, such as Lebesgue's universal cover problem and force closure grasps. In addition to considering special shapes (squares, equilateral triangles, polygons and disks), we give upper and lower bounds on scale factors for single folds of convex objects and arbitrary folds of simply connected objects., Comment: 19 pages, 10 figures, to appear in Journal of Computational Geometry (JoCG)

We introduce a new property of tile self-assembly systems that we call size-separability. A system is size-separable if every terminal assembly is a constant factor larger than any intermediate assembly. Size-separability is motivated by the practical problem of filtering completed assemblies from a variety of incomplete "garbage" assemblies using gel electrophoresis or other mass-based filtering techniques. Here we prove that any system without cooperative bonding assembling a unique mismatch-free terminal assembly can be used to construct a size-separable system uniquely assembling the same shape. The proof achieves optimal scale factor and temperature for the size-separable system. As part of the proof, we obtain two results of independent interest on mismatch-free temperature-1 two-handed systems.

It is shown that every simple polygon in general position with $n$ walls can be illuminated from a single point light source $s$ after at most $\lfloor (n-2)/4\rfloor$ diffuse reflections, and this bound is the best possible. A point $s$ with this property can be computed in $O(n\log n)$ time. It is also shown that the minimum number of diffuse reflections needed to illuminate a given simple polygon from a single point can be approximated up to an additive constant in polynomial time.

We prove two tight bounds on the behavior of a model of self-assembling particles introduced by Dabby and Chen (SODA 2013), called insertion systems, where monomers insert themselves into the middle of a growing linear polymer. First, we prove that the expressive power of these systems is equal to context-free grammars, answering a question posed by Dabby and Chen. Second, we prove that systems of $k$ monomer types can deterministically construct polymers of length $n = 2^{\Theta(k^{3/2})}$ in $O(\log^{5/3}(n))$ expected time, and that this is optimal in both the number of monomer types and expected time., Comment: To appear in Algorithmica. An abstract (12-page) version of this paper appeared in the proceedings of ESA 2014

Previous work by Demaine et al. (2012) developed a strong connection between smallest context-free grammars and staged self-assembly systems for one-dimensional strings and assemblies. We extend this work to two-dimensional polyominoes and assemblies, comparing staged self-assembly systems to a natural generalization of context-free grammars we call polyomino context-free grammars (PCFGs). We achieve nearly optimal bounds on the largest ratios of the smallest PCFG and staged self-assembly system for a given polyomino with n cells. For the ratio of PCFGs over assembly systems, we show the smallest PCFG can be an Omega(n/(log(n))^3)-factor larger than the smallest staged assembly system, even when restricted to square polyominoes. For the ratio of assembly systems over PCFGs, we show that the smallest staged assembly system is never more than a O(log(n))-factor larger than the smallest PCFG and is sometimes an Omega(log(n)/loglog(n))-factor larger., Comment: 34 pages, 23 figures. An abstract version has been accepted to DNA 19

We prove a negative result on the power of a model of algorithmic self-assembly for which it has been notoriously difficult to find general techniques and results. Specifically, we prove that Winfree's abstract Tile Assembly Model, when restricted to use noncooperative tile binding, is not intrinsically universal. This stands in stark contrast to the recent result that, via cooperative binding, the abstract Tile Assembly Model is indeed intrinsically universal. Noncooperative self-assembly, also known as "temperature 1", is where tiles bind to each other if they match on one or more sides, whereas cooperative binding requires binding on multiple sides. Our result shows that the change from single- to multi-sided binding qualitatively improves the kinds of dynamics and behavior that these models of nanoscale self-assembly are capable of. Our lower bound on simulation power holds in both two and three dimensions; the latter being quite surprising given that three-dimensional noncooperative tile assembly systems simulate Turing machines. On the positive side, we exhibit a three-dimensional noncooperative self-assembly tile set capable of simulating any two-dimensional noncooperative self-assembly system. Our negative result can be interpreted to mean that Turing universal algorithmic behavior in self-assembly does not imply the ability to simulate arbitrary algorithmic self-assembly processes., Comment: Added references. Improved presentation of definitions and proofs. This article uses definitions from arXiv:1212.4756. arXiv admin note: text overlap with arXiv:1006.2897 by other authors

We prove a conjecture of Aanjaneya, Bishnu, and Pal that the minimum number of diffuse reflections sufficient to illuminate the interior of any simple polygon with $n$ walls from any interior point light source is $\lfloor n/2 \rfloor - 1$. Light reflecting diffusely leaves a surface in all directions, rather than at an identical angle as with specular reflections., Comment: To appear in Discrete Applied Mathematics

In this paper we explore the power of tile self-assembly models that extend the well-studied abstract Tile Assembly Model (aTAM) by permitting tiles of shapes beyond unit squares. Our main result shows the surprising fact that any aTAM system, consisting of many different tile types, can be simulated by a single tile type of a general shape. As a consequence, we obtain a single universal tile type of a single (constant-size) shape that serves as a "universal tile machine": the single universal tile type can simulate any desired aTAM system when given a single seed assembly that encodes the desired aTAM system. We also show how to adapt this result to convert any of a variety of plane tiling systems (such as Wang tiles) into a "nearly" plane tiling system with a single tile (but with small gaps between the tiles). All of these results rely on the ability to both rotate and translate tiles; by contrast, we show that a single nonrotatable tile, of arbitrary shape, can produce assemblies which either grow infinitely or cannot grow at all, implying drastically limited computational power. On the positive side, we show how to simulate arbitrary cellular automata for a limited number of steps using a single nonrotatable tile and a linear-size seed assembly.

We consider the \emph{smallest superpolyomino problem}: given a set of colored polyominoes, find the smallest polyomino containing each input polyomino as a subshape. This problem is shown to be NP-hard, even when restricted to a set of polyominoes using a single common color. Moreover, for sets of polyominoes using two or more colors, the problem is shown to be NP-hard to approximate within a $O(n^{1/3-\varepsilon})$-factor for any $\varepsilon > 0$., Comment: An abstract version has been submitted to Fall Workshop on Computational Geometry 2012

We consider guarding classes of simple polygons using mobile guards (polygon edges and diagonals) under the constraint that no two guards may see each other. In contrast to most other art gallery problems, existence is the primary question: does a specific type of polygon admit some guard set? Types include simple polygons and the subclasses of orthogonal, monotone, and starshaped polygons. Additionally, guards may either exclude or include the endpoints (so-called open and closed guards). We provide a nearly complete set of answers to existence questions of open and closed edge, diagonal, and mobile guards in simple, orthogonal, monotone, and starshaped polygons, with some surprising results. For instance, every monotone or starshaped polygon can be guarded using hidden open mobile (edge or diagonal) guards, but not necessarily with hidden open edge or hidden open diagonal guards., Comment: An abstract (6-page) version of this paper is to appear in the proceedings of CCCG 2012

We study the difference between the standard seeded model of tile self-assembly, and the "seedless" two-handed model of tile self-assembly. Most of our results suggest that the two-handed model is more powerful. In particular, we show how to simulate any seeded system with a two-handed system that is essentially just a constant factor larger. We exhibit finite shapes with a busy-beaver separation in the number of distinct tiles required by seeded versus two-handed, and exhibit an infinite shape that can be constructed two-handed but not seeded. Finally, we show that verifying whether a given system uniquely assembles a desired supertile is co-NP-complete in the two-handed model, while it was known to be polynomially solvable in the seeded model.

The Rubik's Cube is perhaps the world's most famous and iconic puzzle, well-known to have a rich underlying mathematical structure (group theory). In this paper, we show that the Rubik's Cube also has a rich underlying algorithmic structure. Specifically, we show that the n x n x n Rubik's Cube, as well as the n x n x 1 variant, has a "God's Number" (diameter of the configuration space) of Theta(n^2/log n). The upper bound comes from effectively parallelizing standard Theta(n^2) solution algorithms, while the lower bound follows from a counting argument. The upper bound gives an asymptotically optimal algorithm for solving a general Rubik's Cube in the worst case. Given a specific starting state, we show how to find the shortest solution in an n x O(1) x O(1) Rubik's Cube. Finally, we show that finding this optimal solution becomes NP-hard in an n x n x 1 Rubik's Cube when the positions and colors of some of the cubies are ignored (not used in determining whether the cube is solved)., Comment: 34 pages, 9 figures. A short version of this paper is to appear at the 19th Annual European Symposium on Algorithms