38 results on '"Wojciech Barczak"'
Search Results
2. Combination treatment of T1-44, a PRMT5 inhibitor with Vactosertib, an inhibitor of TGF-β signaling, inhibits invasion and prolongs survival in a mouse model of pancreatic tumors
- Author
-
Eunji Hong, Wojciech Barczak, Sujin Park, Jin Sun Heo, Akira Ooshima, Shonagh Munro, Chang Pyo Hong, Jinah Park, Haein An, Joon Oh Park, Seok Hee Park, Nick B. La Thangue, and Seong-Jin Kim
- Subjects
Cytology ,QH573-671 - Abstract
Abstract Pancreatic ductal adenocarcinoma (PDAC) is the most lethal type of cancer and the third leading cause of cancer death with the lowest 5-year survival rate. Heterogeneity, difficulty in diagnosis, and rapid metastatic progression are the causes of high mortality in pancreatic cancer. Recent studies have shown that Protein arginine methyltransferase 5 (PRMT5) is overexpressed in pancreatic cancers, and these patients have a worse prognosis. Recently, PRMT5 as an anti-cancer target has gained considerable interest. In this study, we investigated whether inhibition of PRMT5 activity was synergistic with blockade of TGF-β1 signaling, which plays an important role in the construction of the desmoplastic matrix in pancreatic cancer and induces therapeutic vulnerability. Compared with T1-44, a selective inhibitor of PRMT5 activity, the combination of T1-44 with the TGF-β1 signaling inhibitor Vactosertib significantly reduced tumor size and surrounding tissue invasion and significantly improved long-term survival. RNA sequencing analysis of mouse tumors revealed that the combination of T1-44 and Vactosertib significantly altered the expression of genes involved in cancer progression, such as cell migration, extracellular matrix, and apoptotic processes. In particular, the expression of Btg2, known as a tumor suppressor factor in various cancers, was markedly induced by combination treatment. Ectopic overexpression of Btg2 inhibited the EMT response, blocking cell migration, and promoted cancer cell death. These data demonstrate that the combination therapy of T1-44 with Vactosertib is synergistic for pancreatic cancer, suggesting that this novel combination therapy has value in the treatment strategy of patients with pancreatic cancer.
- Published
- 2023
- Full Text
- View/download PDF
3. The HDAC inhibitor zabadinostat is a systemic regulator of adaptive immunity
- Author
-
Geng Liu, Wojciech Barczak, Lian Ni Lee, Amit Shrestha, Nicholas M. Provine, Gulsah Albayrak, Hong Zhu, Claire Hutchings, Paul Klenerman, and Nicholas B. La Thangue
- Subjects
Biology (General) ,QH301-705.5 - Abstract
The clinical HDAC inhibitor zabadinostat increases MHC class I and II expression in dendritic cells, activates T and B cells, and enhances adaptive immune responses to COVID-19 spike protein in mice.
- Published
- 2023
- Full Text
- View/download PDF
4. Immune modulation underpins the anti‐cancer activity of HDAC inhibitors
- Author
-
Wiktoria Blaszczak, Geng Liu, Hong Zhu, Wojciech Barczak, Amit Shrestha, Gulsah Albayrak, Shunsheng Zheng, David Kerr, Anastasia Samsonova, and Nicholas B. La Thangue
- Subjects
checkpoints inhibitors ,HDAC inhibitors ,immunotherapy ,tumour microenvironment ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Aberrant protein acetylation is strongly linked to tumorigenesis, and modulating acetylation through targeting histone deacetylase (HDAC) with small‐molecule inhibitors has been the focus of clinical trials. However, clinical success on solid tumours, such as colorectal cancer (CRC), has been limited, in part because the cancer‐relevant mechanisms through which HDAC inhibitors act remain largely unknown. Here, we have explored, at the genome‐wide expression level, the effects of a novel HDAC inhibitor CXD101. In human CRC cell lines, a diverse set of differentially expressed genes were up‐ and downregulated upon CXD101 treatment. Functional profiling of the expression data highlighted immune‐relevant concepts related to antigen processing and natural killer cell‐mediated cytotoxicity. Similar profiles were apparent when gene expression was investigated in murine colon26 CRC cells treated with CXD101. Significantly, these changes were also apparent in syngeneic colon26 tumours growing in vivo. The ability of CXD101 to affect immune‐relevant gene expression coincided with changes in the tumour microenvironment (TME), especially in the subgroups of CD4 and CD8 tumour‐infiltrating T lymphocytes. The altered TME reflected enhanced antitumour activity when CXD101 was combined with immune checkpoint inhibitors (ICIs), such as anti‐PD‐1 and anti‐CTLA4. The ability of CXD101 to reinstate immune‐relevant gene expression in the TME and act together with ICIs provides a powerful rationale for exploring the combination therapy in human cancers.
- Published
- 2021
- Full Text
- View/download PDF
5. Tissue and serum microRNA profile of oral squamous cell carcinoma patients
- Author
-
Augusto Schneider, Berta Victoria, Yury Nunez Lopez, Wiktoria Suchorska, Wojciech Barczak, Agnieszka Sobecka, Wojciech Golusinski, Michal M. Masternak, and Pawel Golusinski
- Subjects
Medicine ,Science - Abstract
Abstract Head and neck cancer is characterized by malignant tumors arising from the epithelium covering the upper aerodigestive tract, and the majority of these epithelial malignancies are squamous cell carcinomas (SCCs) of the oral cavity (OSCCs). The aim of the current work was to identify miRNAs regulated in OSCC cancerous tissue when compared to a healthy adjacent tissue and to verify the presence of the same miRNAs in the circulation of these patients. For that serum samples and biopsies of healthy and tumor tissues were collected from five patients diagnosed with OSCC of the oral cavity, RNA was extracted from these samples and microRNAs libraries were prepared and sequenced. A total 255 miRNAs were identified in tissue and 381 different miRNAs were identified in serum samples. When comparing the miRNA expression between tumor and healthy tissue we identified 48 miRNAs (25 down- and 23 up-regulated) that were differentially expressed (FDR
- Published
- 2018
- Full Text
- View/download PDF
6. Addition of Popular Exogenous Antioxidant Agent, PBN, to Culture Media May Be an Important Step to Optimization of Myogenic Stem/Progenitor Cell Preparation Protocol
- Author
-
Magdalena Nowaczyk, Agnieszka Malcher, Agnieszka Zimna, Wojciech Łabędź, Łukasz Kubaszewski, Wojciech Barczak, Błażej Rubiś, Natalia Rozwadowska, and Maciej Kurpisz
- Subjects
α-phenyl-N-tert-butyl nitrone ,heart failure ,skeletal muscle derived stem cells ,apoptosis ,oxidative stress ,post-infarction heart ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The aim of the study was to modify human skeletal muscle-derived stem/progenitor cells (SkMDS/PCs) and demonstrate the optimal cell preparation protocol for application in post-infarction hearts. We used conditioned SkMDS/PC culture medium with α-phenyl-N-tert-butyl nitrone (PBN). SkMDS/PCs were cultured under hypoxic conditions and the results were compared to the standard ones. We observed a significant increase of CD-56 positive phenotypic marker the ability to form functional myotubes, increase in the proportion of young cells in cell primary suspensions, and a decrease in the percentage of apoptotic cells among PBN-conditioned cells in normoxia an hypoxia. We also observed significantly higher levels of SOD3 expression; maintained expression of SOD1, SOD2, and CAT; a higher level of BCL2 gene expression; and a rather significant decrease in Hsp70 gene expression in PBN-conditioned SkMDS/PCs compared to the WT population under hypoxic conditions. In addition, significant increase of myogenic genes expression was observed after PBN addition to culture medium, compared to WT population under hypoxia. Interestingly, PBN addition significantly increased the lengths of telomeres under hypoxia. Based on the data obtained, we can postulate that PBN conditioning of human SkMDS/PCs could be a promising step in improving myogenic cell preparation protocol for pro-regenerative treatment of post-infarction hearts.
- Published
- 2021
- Full Text
- View/download PDF
7. hTERT Downregulation Attenuates Resistance to DOX, Impairs FAK-Mediated Adhesion, and Leads to Autophagy Induction in Breast Cancer Cells
- Author
-
Aleksandra Romaniuk-Drapała, Ewa Totoń, Natalia Konieczna, Marta Machnik, Wojciech Barczak, Dagmar Kowal, Przemysław Kopczyński, Mariusz Kaczmarek, and Błażej Rubiś
- Subjects
hTERT ,RNAi ,adhesion ,migration ,senescence ,autophagy ,Cytology ,QH573-671 - Abstract
Telomerase is known to contribute to telomere maintenance and to provide cancer cell immortality. However, numerous reports are showing that the function of the enzyme goes far beyond chromosome ends. The study aimed to explore how telomerase downregulation in MCF7 and MDA-MB-231 breast cancer cells affects their ability to survive. Consequently, sensitivity to drug resistance, proliferation, and adhesion were assessed. The lentiviral-mediated human telomerase reverse transcriptase (hTERT) downregulation efficiency was performed at gene expression and protein level using qPCR and Western blot, respectively. Telomerase activity was evaluated using the Telomeric Repeat Amplification Protocol (TRAP) assay. The study revealed that hTERT downregulation led to an increased sensitivity of breast cancer cells to doxorubicin which was demonstrated in MTT and clonogenic assays. During a long-term doubling time assessment, a decreased population doubling level was observed. Interestingly, it did not dramatically affect cell cycle distribution. hTERT downregulation was accompanied by an alteration in β1-integrin- and by focal adhesion kinase (FAK)-driven pathways together with the reduction of target proteins phosphorylation, i.e., paxillin and c-Src. Additionally, autophagy activation was observed in MDA-MB-231 cells manifested by alternations in Atg5, Beclin 1, LC3II/I ratio, and p62. These results provide new evidence supporting the possible therapeutic potential of telomerase downregulation leading to induction of autophagy and cancer cells elimination.
- Published
- 2021
- Full Text
- View/download PDF
8. Contribution of Dopamine Transporter Gene Methylation Status to Cannabis Dependency
- Author
-
Anna Grzywacz, Wojciech Barczak, Jolanta Chmielowiec, Krzysztof Chmielowiec, Aleksandra Suchanecka, Grzegorz Trybek, Jolanta Masiak, Paweł Jagielski, Katarzyna Grocholewicz, and Blazej Rubiś
- Subjects
dopamine transporter gene ,DAT1 ,cannabis ,epigenetics ,dependency ,CpG sites ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The susceptibility to cannabis dependency results from the influence of numerous factors such as social, genetic, as well as epigenetic factors. Many studies have attempted to discover a molecular basis for this disease. However, our study aimed at evaluating the connection between altered methylation of the dopamine transporter gene (DAT1) promoter CpG sites and cannabis dependency. In the cases of some DNA sequences, including the DAT1 gene region, their methylation status in blood cells may reflect a systemic modulation in the whole organism. Consequently, we isolated the DNA from the peripheral blood cells from a group of 201 cannabis-dependent patients and 285 controls who were healthy volunteers and who were matched for age and sex. The DNA was subjected to bisulfite conversion and sequencing. Our analysis revealed no statistical differences in the general methylation status of the DAT1 gene promoter CpG island between the patients and controls. Yet, the analysis of individual CpG sites where methylation occurred indicated significant differences. These sites are known to be bound by transcription factors (e.g., SP1, p53, PAX5, or GR), which, apart from other functions, were shown to play a role in the development of the nervous system. Therefore, DAT1 gene promoter methylation studies may provide important insight into the mechanism of cannabis dependency.
- Published
- 2020
- Full Text
- View/download PDF
9. Blood Serum From Head and Neck Squamous Cell Carcinoma Patients Induces Altered MicroRNA and Target Gene Expression Profile in Treated Cells
- Author
-
Brittany Allen, Augusto Schneider, Berta Victoria, Yury O. Nunez Lopez, Mark Muller, Mateusz Szewczyk, Jakub Pazdrowski, Ewa Majchrzak, Wojciech Barczak, Wojciech Golusinski, Pawel Golusinski, and Michal M. Masternak
- Subjects
head and neck squamous cell carcinomas ,microRNA ,sequencing data analysis ,p53 pathway ,cancer-associated factors ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The head and neck squamous cell carcinoma (HNSCC) represents one of the most common cancers in humans. Close to 600,000 new diagnoses are made every year worldwide and over half of diagnosed patients will not survive. In view of this low survival rate, the development of novel cell-based assays for HNSCC will allow more mechanistic approaches for specific diagnostics for each individual patient. The cell-based assays will provide more informative data predicting cellular processes in treated patient, which in effect would improve patient follow up. More importantly, it will increase the specificity and effectiveness of therapeutic approaches. In this study, we investigated the role of serum from HNSCC patients on the regulation of microRNA (miRNA) expression in exposed cells in vitro. Next-generation sequencing of miRNA revealed that serum from HNSCC patients induced a different miRNA expression profile than the serum from healthy individuals. Out of 377 miRNA detected, we found that 16 miRNAs were differentially expressed when comparing cells exposed to serum from HNSCC or healthy individuals. The analysis of gene ontologies and pathway analysis revealed that these miRNA target genes were involved in biological cancer-related processes, including cell cycle and apoptosis. The real-time PCR analysis revealed that serum from HNSCC patients downregulate the expression level of five genes involved in carcinogenesis and two of these genes—P53 and SLC2A1—are direct targets of detected miRNAs. These novel findings provide new insight into how cancer-associated factors in circulation regulate the expression of genes and regulatory elements in distal cells in favor of tumorigenesis. This has the potential for new therapeutic approaches and more specific diagnostics with tumor-specific cell lines or single-cell in vitro assays for personalized treatment and early detection of primary tumors or metastasis.
- Published
- 2018
- Full Text
- View/download PDF
10. Vitamin C as a Modulator of the Response to Cancer Therapy
- Author
-
Wiktoria Blaszczak, Wojciech Barczak, Julia Masternak, Przemysław Kopczyński, Anatoly Zhitkovich, and Błażej Rubiś
- Subjects
vitamin C ,ascorbate ,cancer ,cancer therapy ,chemotherapy ,oxidative stress ,ROS ,hypoxia ,Organic chemistry ,QD241-441 - Abstract
Ascorbic acid (vitamin C) has been gaining attention as a potential treatment for human malignancies. Various experimental studies have shown the ability of pharmacological doses of vitamin C alone or in combinations with clinically used drugs to exert beneficial effects in various models of human cancers. Cytotoxicity of high doses of vitamin C in cancer cells appears to be related to excessive reactive oxygen species generation and the resulting suppression of the energy production via glycolysis. A hallmark of cancer cells is a strongly upregulated aerobic glycolysis, which elevates its relative importance as a source of ATP (Adenosine 5′-triphosphate). Aerobic glycolysis is maintained by a highly increased uptake of glucose, which is made possible by the upregulated expression of its transporters, such as GLUT-1, GLUT-3, and GLUT-4. These proteins can also transport the oxidized form of vitamin C, dehydroascorbate, permitting its preferential uptake by cancer cells with the subsequent depletion of critical cellular reducers as a result of ascorbate formation. Ascorbate also has a potential to affect other aspects of cancer cell metabolism due to its ability to promote reduction of iron(III) to iron(II) in numerous cellular metalloenzymes. Among iron-dependent dioxygenases, important targets for stimulation by vitamin C in cancer include prolyl hydroxylases targeting the hypoxia-inducible factors HIF-1/HIF-2 and histone and DNA demethylases. Altered metabolism of cancer cells by vitamin C can be beneficial by itself and promote activity of specific drugs.
- Published
- 2019
- Full Text
- View/download PDF
11. Fucoidan Exerts Anticancer Effects Against Head and Neck Squamous Cell Carcinoma In Vitro
- Author
-
Wiktoria Blaszczak, Michal Stefan Lach, Wojciech Barczak, and Wiktoria Maria Suchorska
- Subjects
fucoidan ,head and neck cancer ,marine algae ,complementary therapy ,HNSCC ,Organic chemistry ,QD241-441 - Abstract
Fucoidans have been reported to exert anticancer effects with simultaneous low toxicity against healthy tissue. That correlation was observed in several cancer models, however, it has never been investigated in head and neck cancer before. To magnify the efficacy of conventional therapy, the administration of agents like fucoidan could be beneficial. The aim of this study was to evaluate the anticancer effect of Fucus vesiculosus (FV) extract alone and with co-administration of cisplatin in head and neck squamous cell carcinoma (HNSCC) in vitro. MTT assay results revealed an FV-induced inhibition of proliferation in all tested cell lines (H103, FaDu, KB). Flow cytometric cell cycle analysis showed an FV-induced, dose-dependent arrest in either S/G2 phase (H103, FaDu) or G1 arrest (KB). Furthermore, a dose-dependent gain in apoptotic fraction was observed. Western blot analysis confirmed the induction of apoptosis. A significant dose-dependent increase in reactive oxygen species (ROS) production was revealed in the H103 cell line, while FaDu cells remained unresponsive. On the contrary, an HPV-positive cell line, KB, demonstrated a dose-dependent decrease in ROS synthesis. Moreover, fucoidan enhanced the response to cisplatin (synergistic effect) in all cell lines with the HPV-positive one (KB) being the most sensitive. These results have been confirmed by flow-cytometric apoptosis analysis. In conclusion, we confirmed that fucoidan exhibits anticancer properties against HNSCC, which are manifested by the induction of apoptosis, regulation of ROS production, cell cycle arrest, and inhibition of proliferation.
- Published
- 2018
- Full Text
- View/download PDF
12. Immune modulation underpins the anti‐cancer activity of HDAC inhibitors
- Author
-
Shunsheng Zheng, Amit Shrestha, Wojciech Barczak, Anastasia Samsonova, Hong Zhu, Gulsah Albayrak, Wiktoria Blaszczak, Geng Liu, David J. Kerr, and Nicholas B. La Thangue
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_treatment ,Biology ,Histone Deacetylases ,Mice ,03 medical and health sciences ,0302 clinical medicine ,HDAC inhibitors ,Neoplasms ,Gene expression ,Tumor Microenvironment ,Genetics ,medicine ,Animals ,Humans ,Research Articles ,RC254-282 ,HDAC Inhibitor CXD101 ,Antigen processing ,Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,checkpoints inhibitors ,General Medicine ,Immunotherapy ,medicine.disease ,Histone Deacetylase Inhibitors ,030104 developmental biology ,Oncology ,Acetylation ,030220 oncology & carcinogenesis ,Cancer research ,Molecular Medicine ,Histone deacetylase ,immunotherapy ,tumour microenvironment ,CD8 ,Research Article - Abstract
Aberrant protein acetylation is strongly linked to tumorigenesis, and modulating acetylation through targeting histone deacetylase (HDAC) with small‐molecule inhibitors has been the focus of clinical trials. However, clinical success on solid tumours, such as colorectal cancer (CRC), has been limited, in part because the cancer‐relevant mechanisms through which HDAC inhibitors act remain largely unknown. Here, we have explored, at the genome‐wide expression level, the effects of a novel HDAC inhibitor CXD101. In human CRC cell lines, a diverse set of differentially expressed genes were up‐ and downregulated upon CXD101 treatment. Functional profiling of the expression data highlighted immune‐relevant concepts related to antigen processing and natural killer cell‐mediated cytotoxicity. Similar profiles were apparent when gene expression was investigated in murine colon26 CRC cells treated with CXD101. Significantly, these changes were also apparent in syngeneic colon26 tumours growing in vivo. The ability of CXD101 to affect immune‐relevant gene expression coincided with changes in the tumour microenvironment (TME), especially in the subgroups of CD4 and CD8 tumour‐infiltrating T lymphocytes. The altered TME reflected enhanced antitumour activity when CXD101 was combined with immune checkpoint inhibitors (ICIs), such as anti‐PD‐1 and anti‐CTLA4. The ability of CXD101 to reinstate immune‐relevant gene expression in the TME and act together with ICIs provides a powerful rationale for exploring the combination therapy in human cancers., CXD101 is a novel histone deacetylase inhibitor with potent antitumour activity. We find that CXD101 reinstates immune‐relevant gene expression in tumours, which includes major histocompatibility complex class I and class II genes. This enables CXD101 to enhance the activity of immune checkpoint therapies, such as anti‐PD‐1, on tumours that would otherwise be poorly responsive and coincides with increased T lymphocyte infiltration into the tumour microenvironment.
- Published
- 2021
13. No Association between ABCB1 G2677T/A or C3435T Polymorphisms and Survival of Breast Cancer Patients—A 10-Year Follow-Up Study in the Polish Population
- Author
-
Ewa Totoń, Barbara Jacczak, Wojciech Barczak, Paweł Jagielski, Robert Gryczka, Hanna Hołysz, Sylwia Grodecka-Gazdecka, and Błażej Rubiś
- Subjects
ATP Binding Cassette Transporter, Subfamily B ,Genetics ,Humans ,Breast Neoplasms ,Estrogens ,Female ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,Poland ,Polymorphism, Single Nucleotide ,breast cancer risk ,ABCB1 ,polymorphism ,glycoprotein P ,drug resistance ,hormone receptors ,Genetics (clinical) ,Follow-Up Studies - Abstract
Many intensive studies are devoted to identifying novel cancer diagnostics or therapy strategies that would boost cancer therapy efficacy and recovery rates. Importantly, polymorphisms in the genes coding for ABC family proteins were considered good candidates for cancer development risk or cancer drug resistance markers. For this reason, we decided to assess the contribution of ABCB1’s most common variants (i.e., G2677T/A in exon 21/rs2032582 and C3435T in exon 26/rs1045642) to the cancer therapy response in breast cancer patients. A 10-year follow-up analysis of 157 breast cancer patients was performed. Clinical assessment, ABCB1 polymorphism status, estrogen/progesterone/human epidermal receptors status, and other characteristics were compared according to the follow-up status using the Chi-square statistic. For the analysis of overall survival curves in TCGA breast cancer patients, the Xena browser was used. We show that neither 2677 nor 3435 polymorphisms contributed to the survival of breast cancer patients. Interestingly, but not surprisingly, estrogen and progesterone receptors status were good prognostic factors and positively correlated with a disease-free survival for up to 10 years. To summarize, ABCB1 polymorphisms status may be one of the numerous factors that affect cancer development. However, they may not be the critical ones when it comes to risk or recovery assessment. Consequently, they may not be treated as reliable prognostic or predictive markers in breast cancer patients’ evaluation, which supports the previous findings and current knowledge.
- Published
- 2022
- Full Text
- View/download PDF
14. Telomere length: how the length makes a difference
- Author
-
J Bajsert, Wojciech Barczak, M Lulkiewicz, Blazej Rubis, and Przemysław Kopczyński
- Subjects
0301 basic medicine ,Aging ,Telomerase ,Somatic cell ,media_common.quotation_subject ,Longevity ,Cell ,Review ,Biology ,Bioinformatics ,Affect (psychology) ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,medicine ,Humans ,Molecular Biology ,media_common ,Immortality ,Telomere Homeostasis ,General Medicine ,Telomere ,Hormones ,Telomeres ,030104 developmental biology ,Trustworthiness ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Sex ,Cell Division - Abstract
Telomerase is perceived as an immortality enzyme that might provide longevity to cells and whole organisms. Importantly, it is generally inactive in most somatic cells of healthy, adult men. Consequently, its substrates, i.e. telomeres, get shorter in most human cells with time. Noteworthy, cell life limitation due to telomere attrition during cell divisions, may not be as bad as it looks since longer cell life means longer exposition to harmful factors. Consequently, telomere length (attrition rate) becomes a factor that is responsible for inducing the signaling that leads to the elimination of cells that lived long enough to acquire severe damage. It seems that telomere length that depends on many different factors (including telomerase activity but also genetic factors, a hormonal profile that reflects sex, etc.) might become a useful marker of aging and exposition to stress. Thus in the current paper, we review the factors that affect telomere length in human cells focusing on sex that all together with different environmental and hormonal regulations as well as parental aspect affect telomere attrition rate. We also raise some limitations in the assessment of telomere length that hinders a trustworthy meta-analysis that might lead to acknowledgment of the real value of this parameter.
- Published
- 2020
- Full Text
- View/download PDF
15. The Kinetics of γ-H2AX During Radiotherapy of Head and Neck Cancer Potentially Allow for Prediction of Severe Mucositis
- Author
-
Wiktoria Maria Suchorska, Tomasz Winiecki, J. Kazmierska, Łukasz Łuczewski, Wojciech Barczak, and Magdalena Marciniak
- Subjects
Male ,Mucositis ,medicine.medical_specialty ,Radiation-Sensitizing Agents ,Time Factors ,peripheral blood lymphocytes ,medicine.medical_treatment ,Lymphocyte ,R895-920 ,macromolecular substances ,Gastroenterology ,Severity of Illness Index ,030218 nuclear medicine & medical imaging ,Histones ,03 medical and health sciences ,Medical physics. Medical radiology. Nuclear medicine ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Lymphocytes ,Prospective Studies ,Phosphorylation ,skin and connective tissue diseases ,Chemotherapy ,Radiotherapy ,business.industry ,Head and neck cancer ,Significant difference ,Chemoradiotherapy ,medicine.disease ,Peripheral ,Radiation therapy ,medicine.anatomical_structure ,Oncology ,γ-H2AX ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Concomitant ,Female ,sense organs ,Cisplatin ,business ,Research Article - Abstract
Background The aim of the study was to evaluate the changes in γ-H2AX expression in peripheral blood lymphocytes (PBL) according to severity of radiation-induced mucositis. Patients and method Fifty patients with head and neck cancer treated with radiotherapy (RT) or chemoradiation were included in the study. Blood samples were collected before treatment to measure baseline γ-H2AX levels. Second sample was taken 45 minutes after the first RT fraction and then once a week, 45 min after irradiation. In patients treated with chemoradiation the blood sample was taken the day after chemotherapy. Mucositis was evaluated once a week and reported according to CTCAE v4 and RTOG/EORTC scales. PBL were analyzed with flow cytometry and level of H2AX phosphorylation at every time point was evaluated. Results In 35 patients mild to moderate (grade 1–2) mucositis was observed and 15 patients developed severe (grade 3) mucositis. No cases of grade 4 mucositis were observed. The difference in baseline levels of γ-H2AX between groups with mild and severe mucositis was statistically insignificant (p = 0.25). The statistically significant difference in γ-H2AX level was observed in week 7 of treatment (p = 0.01). No significant differences in γ-H2AX level were found neither between group treated with concomitant chemoradiation or RT alone neither between groups with and without common comorbidities. In the analysis of the kinetics of γ-H2AX during treatment, a statistically significant difference (p = 0.0088) between groups with mild and severe mucositis was observed. After fourth week of treatment levels of γ-H2AX decreased significantly in the group with severe mucositis and increased in patients with mild side effects. The observed difference was not caused by the decrease in peripheral lymphocyte count, which was similar in both groups. Conclusions Presented results indicate that severity of radiation-induced mucositis does not correlate directly with γ-H2AX levels measured in vivo in PBL. Prediction of mucositis grade based on γ-H2AX level is not yet possible, either before treatment or early during treatment, but preliminary results, indicating significant differences in γ-H2AX kinetics between groups, encourage further studies.
- Published
- 2020
16. miRNAs as Biomarkers for Diagnosing and Predicting Survival of Head and Neck Squamous Cell Carcinoma Patients
- Author
-
Augusto Schneider, Wojciech Barczak, Xiang Zhu, Sarah Ashiqueali, Michal M. Masternak, Allancer D. C. Nunes, Wojciech Golusiński, Agnieszka Sobecka, Mateusz Szewczyk, Sarah Noureddine, Tatiana D. Saccon, Paweł Golusiński, and Igor Piotrowski
- Subjects
Larynx ,Cancer Research ,oropharyngeal cancer ,Differentially expressed mirnas ,Oral cavity ,medicine.disease_cause ,head and neck squamous cell carcinoma ,Article ,Pathogenesis ,stomatognathic system ,microRNA ,medicine ,otorhinolaryngologic diseases ,RC254-282 ,miRNA ,business.industry ,Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,oral cancer ,medicine.disease ,Head and neck squamous-cell carcinoma ,stomatognathic diseases ,medicine.anatomical_structure ,Oncology ,Cancer research ,laryngeal cancer ,Carcinogenesis ,business - Abstract
Simple Summary Head and Neck Squamous Cell Carcinoma (HNSCC) is the sixth most common cancer worldwide. It arises from the epithelium of the upper aerodigestive tract. Increasing evidence suggests that there is a significant role of microRNAs in HNSCC formation and progression. The aim of this study was to explore and compare the expression of HNSCC related miRNAs in tumor vs neighboring healthy tissue of HNSCC patients with tumors located in either the oral cavity, oropharynx, or larynx. Our results demonstrated that expression of these miRNAs was significantly different not only between healthy and tumor tissues, but also among tumor locations. Further analysis indicated that microRNA expression could be used to distinguish between tumor and healthy tissues, and prognose the overall survival of patients. Abstract Head and Neck Squamous Cell Carcinoma (HNSCC) is the sixth most common cancer worldwide. These tumors originate from epithelial cells of the upper aerodigestive tract. HNSCC tumors in different regions can have significantly different molecular characteristics. While many microRNAs (miRNAs) have been found to be involved in the regulation of the carcinogenesis and pathogenesis of HNSCC, new HNSCC related miRNAs are still being discovered. The aim of this study was to explore potential miRNA biomarkers that can be used to diagnose HNSCC and prognose survival of HNSCC patients. For this purpose, we chose a panel of 12 miRNAs: miR-146a-5p, miR-449a, miR-126-5p, miR-34a-5p, miR-34b-5p, miR-34c-5p, miR-217-5p, miR-378c, miR-6510-3p, miR-96-5p, miR-149-5p, and miR-133a-5p. Expression of these miRNAs was measured in tumor tissue and neighboring healthy tissue collected from patients diagnosed with HNSCC (n = 79) in either the oral cavity, oropharynx, or larynx. We observed a pattern of differentially expressed miRNAs at each of these cancer locations. Our study showed that some of these miRNAs, separately or in combination, could serve as biomarkers distinguishing between healthy and tumor tissue, and their expression correlated with patients’ overall survival.
- Published
- 2021
- Full Text
- View/download PDF
17. Addition of Popular Exogenous Antioxidant Agent, PBN, to Culture Media May Be an Important Step to Optimization of Myogenic Stem/Progenitor Cell Preparation Protocol
- Author
-
Agnieszka Zimna, Agnieszka Malcher, Łukasz Kubaszewski, Natalia Rozwadowska, Magdalena Nowaczyk, Wojciech Barczak, Błażej Rubiś, Maciej Kurpisz, and Wojciech Łabędź
- Subjects
0301 basic medicine ,Physiology ,Clinical Biochemistry ,Population ,SOD2 ,heart failure ,RM1-950 ,medicine.disease_cause ,Biochemistry ,Article ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,medicine ,α-phenyl-N-tert-butyl nitrone ,oxidative stress ,Progenitor cell ,education ,Molecular Biology ,education.field_of_study ,Chemistry ,Myogenesis ,apoptosis ,Cell Biology ,Hypoxia (medical) ,Cell biology ,030104 developmental biology ,Apoptosis ,post-infarction heart ,Therapeutics. Pharmacology ,medicine.symptom ,skeletal muscle derived stem cells ,030217 neurology & neurosurgery ,Oxidative stress - Abstract
The aim of the study was to modify human skeletal muscle-derived stem/progenitor cells (SkMDS/PCs) and demonstrate the optimal cell preparation protocol for application in post-infarction hearts. We used conditioned SkMDS/PC culture medium with α-phenyl-N-tert-butyl nitrone (PBN). SkMDS/PCs were cultured under hypoxic conditions and the results were compared to the standard ones. We observed a significant increase of CD-56 positive phenotypic marker the ability to form functional myotubes, increase in the proportion of young cells in cell primary suspensions, and a decrease in the percentage of apoptotic cells among PBN-conditioned cells in normoxia an hypoxia. We also observed significantly higher levels of SOD3 expression, maintained expression of SOD1, SOD2, and CAT, a higher level of BCL2 gene expression, and a rather significant decrease in Hsp70 gene expression in PBN-conditioned SkMDS/PCs compared to the WT population under hypoxic conditions. In addition, significant increase of myogenic genes expression was observed after PBN addition to culture medium, compared to WT population under hypoxia. Interestingly, PBN addition significantly increased the lengths of telomeres under hypoxia. Based on the data obtained, we can postulate that PBN conditioning of human SkMDS/PCs could be a promising step in improving myogenic cell preparation protocol for pro-regenerative treatment of post-infarction hearts.
- Published
- 2021
18. Skin barrier function in patients under radiation therapy due to the head and neck cancers - Preliminary study
- Author
-
Aleksandra Daſczak-Pazdrowska, Wojciech Barczak, Paweſ Golusiſski, Zygmunt Adamski, Ryszard Żaba, Adriana Polaſska, Wojciech Golusiſski, Mateusz Szewczyk, Joanna Kaźmierska, and Jakub Pazdrowski
- Subjects
Target lesion ,medicine.medical_specialty ,Transepidermal water loss ,business.industry ,medicine.medical_treatment ,Head and neck cancer ,Original research article ,Common Terminology Criteria for Adverse Events ,medicine.disease ,030218 nuclear medicine & medical imaging ,Radiation therapy ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Concomitant ,medicine ,Radiodermatitis ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Prospective cohort study - Abstract
Aim To present the possibility of non-invasive monitoring of the skin after radiotherapy in regards of epidermal barrier function. Background Radiodermatitis constitutes 95% of all side effects in patients after radiotherapy. The proper assessment of the severity of radiodermatitis can be determined using semi-quantitative clinical scores [Common Terminology Criteria for Adverse Events v 4.0 (CTCAE)].The most accepted way to analyze the epidermal barrier function is to determine Transepidermal Water Loss (TEWL). Material and methods In prospective study, we included 16 patients diagnosed with head and neck cancer treated with radiotherapy or concomitant chemoradiation in whom we performed non-invasive assessments of the skin barrier function, including TEWL measurement. The final analysis included 6 patients (4 treated with adjuvant radiotherapy, 2 with radical chemoradiation). Clinical assessment of irradiated skin was based on target lesion score (TLS) and CTCAE v 4.0 Results The mean TLS score in the middle of irradiation was 1.6 points, after last irradiation it was 2.3 points; 3 months later the mean TLS score was: 0. CTCAE v 4.0 criteria: 2 patients had grade 0, 3 patients - grade 1; 1 patient - grade 2. There were statistically significant differences in TEWL related to irradiated skin in the following time intervals: before vs. in the middle; before vs. day after; in the middle vs. day after; in the middle vs. 3 months after; day after vs. 3 months after. Conclusions The study showed that radiotherapy causes skin barrier dysfunction in all patients independently of clinical radiodermatitis. The biophysical features of this dysfunction can precede clinical symptoms and they can be assessed by non-invasive and objective methods.
- Published
- 2019
- Full Text
- View/download PDF
19. Contribution of Dopamine Transporter Gene Methylation Status to Cannabis Dependency
- Author
-
Grzegorz Trybek, Krzysztof Chmielowiec, Jolanta Chmielowiec, Jolanta Masiak, Aleksandra Suchanecka, Błażej Rubiś, Wojciech Barczak, Katarzyna Grocholewicz, Anna Grzywacz, and Paweł Jagielski
- Subjects
cannabis ,Bisulfite sequencing ,CpG sites ,Article ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,DAT1 ,Epigenetics ,Gene ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,030304 developmental biology ,Dopamine transporter ,Genetics ,0303 health sciences ,biology ,epigenetics ,General Neuroscience ,Promoter ,Methylation ,dopamine transporter gene ,CpG site ,DNA methylation ,biology.protein ,030217 neurology & neurosurgery ,dependency - Abstract
The susceptibility to cannabis dependency results from the influence of numerous factors such as social, genetic, as well as epigenetic factors. Many studies have attempted to discover a molecular basis for this disease. However, our study aimed at evaluating the connection between altered methylation of the dopamine transporter gene (DAT1) promoter CpG sites and cannabis dependency. In the cases of some DNA sequences, including the DAT1 gene region, their methylation status in blood cells may reflect a systemic modulation in the whole organism. Consequently, we isolated the DNA from the peripheral blood cells from a group of 201 cannabis-dependent patients and 285 controls who were healthy volunteers and who were matched for age and sex. The DNA was subjected to bisulfite conversion and sequencing. Our analysis revealed no statistical differences in the general methylation status of the DAT1 gene promoter CpG island between the patients and controls. Yet, the analysis of individual CpG sites where methylation occurred indicated significant differences. These sites are known to be bound by transcription factors (e.g., SP1, p53, PAX5, or GR), which, apart from other functions, were shown to play a role in the development of the nervous system. Therefore, DAT1 gene promoter methylation studies may provide important insight into the mechanism of cannabis dependency.
- Published
- 2020
20. hTERT promoter methylation status in peripheral blood leukocytes as a molecular marker of head and neck cancer progression
- Author
-
Wiktoria Maria Suchorska, Blazej Rubis, Wojciech Golusiński, Wojciech Barczak, Agnieszka Sobecka, Paweł Golusiński, Wiktoria Blaszczak, and Michal M. Masternak
- Subjects
0301 basic medicine ,Telomerase ,Head and neck cancer ,Cancer ,General Medicine ,Methylation ,Biology ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,CpG site ,030220 oncology & carcinogenesis ,Cancer cell ,Genetics ,Cancer research ,medicine ,Biomarker (medicine) ,Telomerase reverse transcriptase ,neoplasms - Abstract
Cancer cells, including head and neck cancer cell carcinoma (HNSCC), are characterized by an increased telomerase activity. This enzymatic complex is active in approximately 80–90% of all malignancies, and is regulated by various factors, including methylation status of hTERT gene promoter. hTERT methylation pattern has been thoroughly studied so far. It was proved that hTERT is aberrantly methylated in tumor tissue versus healthy counterparts. However, such effect has not yet been investigated in PBLs (peripheral blood leukocytes) of cancer patients. The aim of this study was to analyze the hTERT gene promoter methylation status in blood leukocytes. DNA was extracted from PBL of 92 patients with histologically diagnosed HNSCC and 53 healthy controls. Methylation status of whole hTERT promoter fragment with independent analysis of each 19 CpG sites was performed using bisulfide conversion technique followed by sequencing of PCR products. Not significant (p = 0.0532) differences in the general frequency of hTERT CpG sites methylation were detected between patients and healthy controls. However, it was discovered that some of analyzed positions (CpG islands: 1 [p = 0.0235], 5 [p = 0.0462], 8 [p = 0.0343]) are significantly more often methylated in HNSCC patients than in controls. The opposite finding was observed in case of CpG position 2 (p = 0.0210). Furthermore, closer analysis of single CpG positions revealed differences in methylation status dependent on anatomical site and TNM classification. To conclude, hTERT promoter methylation status (general or single CpG sites) would be considered as a molecular markers of HNSCC diagnostics.
- Published
- 2018
- Full Text
- View/download PDF
21. hTERT gene knockdown enhances response to radio- and chemotherapy in head and neck cancer cell lines through a DNA damage pathway modification
- Author
-
Wojciech Golusiński, Paweł Golusiński, Agnieszka Sobecka, Wiktoria Maria Suchorska, Michal M. Masternak, Wojciech Barczak, and Blazej Rubis
- Subjects
0301 basic medicine ,Small interfering RNA ,Cell cycle checkpoint ,DNA Repair ,DNA repair ,cells ,Down-Regulation ,lcsh:Medicine ,Apoptosis ,Article ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Gene silencing ,Humans ,Telomerase reverse transcriptase ,DNA Breaks, Double-Stranded ,RNA, Small Interfering ,lcsh:Science ,Telomerase ,neoplasms ,Gene knockdown ,Multidisciplinary ,medicine.diagnostic_test ,Chemistry ,lcsh:R ,Cell Cycle Checkpoints ,enzymes and coenzymes (carbohydrates) ,030104 developmental biology ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Gene Knockdown Techniques ,embryonic structures ,Cancer research ,lcsh:Q ,biological phenomena, cell phenomena, and immunity ,DNA Damage - Abstract
The aim of the study was to analyze the effect of hTERT gene knockdown in HNSCC cells by using novel in vitro models of head and neck cancer (HNSCC), as well as improving its personalized therapy. To obtain the most efficient knockdown siRNA, shRNA-bearing lentiviral vectors were used. The efficiency of hTERT silencing was verified with qPCR, Western blot, and immunofluorescence staining. Subsequently, the type of cell death and DNA repair mechanism induction after hTERT knockdown was assessed with the same methods, followed by flow cytometry. The effect of a combined treatment with hTERT gene knockdown on Double-Strand Breaks levels was also evaluated by flow cytometry. Results showed that the designed siRNAs and shRNAs were effective in hTERT knockdown in HNSCC cells. Depending on a cell line, hTERT knockdown led to a cell cycle arrest either in phase G1 or phase S/G2. Induction of apoptosis after hTERT downregulation with siRNA was observed. Additionally, hTERT targeting with lentiviruses, followed by cytostatics administration, led to induction of apoptosis. Interestingly, an increase in Double-Strand Breaks accompanied by activation of the main DNA repair mechanism, NER, was also observed. Altogether, we conclude that hTERT knockdown significantly contributes to the efficacy of HNSCC treatment.
- Published
- 2018
- Full Text
- View/download PDF
22. Potencjał fukoidyny jako środka wspomagającego w terapii onkologicznej
- Author
-
Wiktoria Maria Suchorska, Wojciech Barczak, Wiktoria Blaszczak, and Agnieszka Sobecka
- Subjects
Cancer Research ,Oncology - Abstract
Nowotwory nadal stanowią jedną z głównych przyczyn śmiertelności w populacji światowej, a długotrwałe ich leczenie jest trudne i wysoce problematyczne, pomimo znacznego pogłębienia wiedzy z zakresu ich biologii. Obecnie wykorzystywane metody terapeutyczne cechują się wysoką toksycznością, tym samym często udaremniając skuteczne wyleczenie i pogarszając jakość życia chorych. Z tego względu wzrasta zainteresowane środkami, które mogłyby wzmocnić skuteczność konwencjonalnej terapii lub ograniczyć występowanie poważnych skutków ubocznych. Przykładem takiej substancji jest fukoidyna - sulfonowany fukan pochodzenia naturalnego, pozyskiwany z alg i brunatnic. Istnieją liczne doniesienia potwierdzające jej efekty terapeutyczne obejmujące właściwości przeciwnowotworowe, przeciwwirusowe oraz immunomodulujące. Poniższa praca zawiera opis efektów terapeutycznych wywoływanych przez fukoidynę wyekstrahowaną z różnych gatunków alg w poszczególnych modelach nowotworów. Praca uwzględnia poznane dotychczas i proponowane mechanizmy indukcji efektów przeciwnowotworowych oraz krytyczną ocenę ograniczeń fukoidyny jako potencjalnego środka wspomagającego w terapii onkologicznej.
- Published
- 2017
- Full Text
- View/download PDF
23. Telomeraza jako potencjalny cel terapii nowotworów głowy i szyi
- Author
-
Agata Dylawerska, Wiktoria Maria Suchorska, and Wojciech Barczak
- Subjects
Cancer Research ,Oncology - Abstract
Telomeraza to duży, złożony kompleks enzymatyczny, który odpowiada za proces syntezy telomerów budujących zakończenia eukariotycznych chromosomów. Podwyższona ekspresja genu kodującego katalityczną podjednostkę tego enzymu – hTERT – jest obserwowana w około 88% przypadków nowotworów rejonu głowy i szyi. Komórki rakowe zyskują wówczas wysoki potencjał replikacyjny, a także zdolność do unikania apoptozy. Zahamowanie aktywności telomerazy w terapii przeciwnowotworowej stało się priorytetem badań naukowych już kilkanaście lat temu. Istnieją różne metody wykorzystujące obniżenie ekspresji telomerazy, od terapii genowej do wykorzystania przeciwutleniaczy. Pomimo wielu danych zebranych w ostatnich latach pojawia się coraz więcej pytań w odniesieniu do roli telomerazy w powstawaniu raka. Należy przeprowadzić więcej szczegółowych badań w celu zrozumienia udziału tego enzymu w procesie rozwoju nowotworu w obrębie narządów głowy i szyi. Celem niniejszego artykułu jest zebranie dotychczasowej wiedzy na temat zastosowania telomerazy w terapii onkologicznej.
- Published
- 2017
- Full Text
- View/download PDF
24. Arginine methylation expands the regulatory mechanisms and extends the genomic landscape under E2F control
- Author
-
Anastasia Samsonova, Simon M. Carr, Alexander Kanapin, Wojciech Barczak, Alice Poppy Roworth, Geng Liu, Shonagh Munro, Nicholas B. La Thangue, and Rebecca L. Miller
- Subjects
endocrine system ,Tudor domain ,Computational biology ,Biology ,Arginine ,Methylation ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Transcription (biology) ,Endopeptidases ,Humans ,Transcription factor ,Research Articles ,Cancer ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Protein arginine methyltransferase 5 ,Alternative splicing ,SciAdv r-articles ,Cell Biology ,Genomics ,Chromatin ,E2F Transcription Factors ,Alternative Splicing ,030220 oncology & carcinogenesis ,RNA splicing ,RNA ,biological phenomena, cell phenomena, and immunity ,Small nuclear RNA ,Research Article - Abstract
Arginine methylation widens the mechanism of control by E2F1 from a transcription factor to a regulator of alternative RNA splicing., E2F is a family of master transcription regulators involved in mediating diverse cell fates. Here, we show that residue-specific arginine methylation (meR) by PRMT5 enables E2F1 to regulate many genes at the level of alternative RNA splicing, rather than through its classical transcription-based mechanism. The p100/TSN tudor domain protein reads the meR mark on chromatin-bound E2F1, allowing snRNA components of the splicing machinery to assemble with E2F1. A large set of RNAs including spliced variants associate with E2F1 by virtue of the methyl mark. By focusing on the deSUMOylase SENP7 gene, which we identified as an E2F target gene, we establish that alternative splicing is functionally important for E2F1 activity. Our results reveal an unexpected consequence of arginine methylation, where reader-writer interplay widens the mechanism of control by E2F1, from transcription factor to regulator of alternative RNA splicing, thereby extending the genomic landscape under E2F1 control.
- Published
- 2019
- Full Text
- View/download PDF
25. An ultrasonographic monitoring of skin condition in patients receiving radiotherapy for head and neck cancers
- Author
-
Wojciech Golusiński, Jakub Pazdrowski, Ryszard Żaba, Paweł Golusiński, Mateusz Szewczyk, Joanna Kaźmierska, Adriana Polańska, Wojciech Barczak, Aleksandra Dańczak-Pazdrowska, and Zygmunt Adamski
- Subjects
Target lesion ,medicine.medical_specialty ,medicine.medical_treatment ,Dermatology ,01 natural sciences ,010309 optics ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,0103 physical sciences ,Image Interpretation, Computer-Assisted ,medicine ,Radiodermatitis ,Humans ,In patient ,Prospective Studies ,Head and neck ,Skin ,Ultrasonography ,business.industry ,Echogenicity ,medicine.disease ,Radiation therapy ,Head and Neck Neoplasms ,Concomitant ,Radiology ,business - Abstract
Radiodermatitis is one of the commonest side effects of radiotherapy. They are usually assessed by semi-quantitative clinical scores, which are not validated and may be subject to inter-observer variability. A few previous studies suggested that high-frequency ultrasonography (HF-USG) is useful in the assessment of the acute phase of radiation dermatitis in breast cancer patients. (a) To monitor skin changes by HF-USG during the course of radiotherapy due to head and neck cancers, and (b) to determine whether there is any connection between skin sonograms and the skin scoring criteria. This prospective, observational study includes patients diagnosed with head and neck cancers, treated with radiotherapy or concomitant chemoradiation. The final analysis includes six patients. In every patient, the HF-USG as well as dermatological assessment (target lesion score-TLS and CACE v. 4.0) were performed 4×: before, in the middle, day after, and 3 months after radiotherapy. There were significant differences between non-irradiated skin thickness and thickness of skin with clinically obvious radiodermatitis (TLS grade 1-4; P < .0001), as well as between irradiated, unchanged skin thickness (TLS grade 0) and thickness of skin with clinically obvious radiodermatitis (TLS grade 1-4; P = .0002). There was no significant difference between non-irradiated and irradiated, unchanged skin thickness (TLS grade 0; P = .9318). In four patients, we demonstrated subepidermal low echogenic band (SLEB). HF-USG can be useful tool to noninvasive and objective assessment of skin changes during radiotherapy.
- Published
- 2019
26. hTERT Downregulation Attenuates Resistance to DOX, Impairs FAK-Mediated Adhesion, and Leads to Autophagy Induction in Breast Cancer Cells
- Author
-
Marta Machnik, Ewa Toton, Błażej Rubiś, Wojciech Barczak, Natalia Konieczna, Mariusz Kaczmarek, Przemysław Kopczyński, Dagmar Kowal, and Aleksandra Romaniuk-Drapała
- Subjects
autophagy ,Telomerase ,senescence ,Cell Survival ,ATG5 ,Down-Regulation ,Breast Neoplasms ,migration ,Article ,Focal adhesion ,breast cancer ,Downregulation and upregulation ,Cell Movement ,Cell Line, Tumor ,Humans ,Telomerase reverse transcriptase ,Gene Silencing ,lcsh:QH301-705.5 ,Tumor Stem Cell Assay ,Cell Proliferation ,Chemistry ,Cell Cycle ,General Medicine ,Cell cycle ,Neoplasm Proteins ,Telomere ,adhesion ,lcsh:Biology (General) ,Doxorubicin ,Drug Resistance, Neoplasm ,Focal Adhesion Protein-Tyrosine Kinases ,RNAi ,Cancer cell ,Cancer research ,Female ,hTERT - Abstract
Telomerase is known to contribute to telomere maintenance and to provide cancer cell immortality. However, numerous reports are showing that the function of the enzyme goes far beyond chromosome ends. The study aimed to explore how telomerase downregulation in MCF7 and MDA-MB-231 breast cancer cells affects their ability to survive. Consequently, sensitivity to drug resistance, proliferation, and adhesion were assessed. The lentiviral-mediated human telomerase reverse transcriptase (hTERT) downregulation efficiency was performed at gene expression and protein level using qPCR and Western blot, respectively. Telomerase activity was evaluated using the Telomeric Repeat Amplification Protocol (TRAP) assay. The study revealed that hTERT downregulation led to an increased sensitivity of breast cancer cells to doxorubicin which was demonstrated in MTT and clonogenic assays. During a long-term doubling time assessment, a decreased population doubling level was observed. Interestingly, it did not dramatically affect cell cycle distribution. hTERT downregulation was accompanied by an alteration in β1-integrin- and by focal adhesion kinase (FAK)-driven pathways together with the reduction of target proteins phosphorylation, i.e., paxillin and c-Src. Additionally, autophagy activation was observed in MDA-MB-231 cells manifested by alternations in Atg5, Beclin 1, LC3II/I ratio, and p62. These results provide new evidence supporting the possible therapeutic potential of telomerase downregulation leading to induction of autophagy and cancer cells elimination.
- Published
- 2021
- Full Text
- View/download PDF
27. The importance of stem cell engineering in head and neck oncology
- Author
-
Wiktoria Maria Suchorska, Wojciech Barczak, Wojciech Golusiński, Paweł Golusiński, Michal M. Masternak, and Lukasz Luczewski
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Reconstructive surgery ,Bioengineering ,Review ,Vocal Cords ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,Tissue engineering ,Internal medicine ,medicine ,Humans ,Induced pluripotent stem cell ,Head and neck cancer ,Tissue Engineering ,HESC ,Stem Cells ,Mesenchymal stem cell ,Cancer ,Cell Differentiation ,General Medicine ,Plastic Surgery Procedures ,medicine.disease ,Head and neck squamous-cell carcinoma ,Trachea ,Induced pluripotent stem cells ,030104 developmental biology ,Cartilage ,Head and Neck Neoplasms ,Carcinoma, Squamous Cell ,Quality of Life ,Mesenchymal stem cells ,Stem cell ,Stem cell tissue engineering ,Biotechnology - Abstract
Head and neck squamous cell carcinoma is the sixth leading cause of cancer worldwide. The most common risk factors are carcinogens (tobacco, alcohol), and infection of the human papilloma virus. Surgery is still considered as the treatment of choice in case of head and neck cancer, followed by a reconstructive surgery to enhance the quality of life in the patients. However, the widespread use of artificial implants does not provide appropriate physiological activities and often cannot act as a long-term solution for the patients. Here we review the applicability of multiple stem cell types for tissue engineering of cartilage, trachea, vocal folds and nerves for head and neck injuries. The ability of the cells to self-renew and maintain their pluripotency state makes them an attractive tool in tissue engineering.
- Published
- 2016
28. Telomere length assessment in leukocytes presents potential diagnostic value in patients with breast cancer
- Author
-
Błażej Rubiś, Krzysztof Książek, Sylwia Grodecka‑Gazdecka, Wojciech Barczak, Aleksandra Romaniuk, Natalia Rozwadowska, Natalia Lisiak, and Natalia Lipińska
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,Telomerase ,Oncogene ,business.industry ,Cancer ,Estrogen receptor ,Articles ,Bioinformatics ,medicine.disease ,Telomere ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Breast cancer ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,Internal medicine ,Progesterone receptor ,medicine ,skin and connective tissue diseases ,business - Abstract
Telomere shortening is associated with cancer development, primarily through the induction of genomic instability. The majority of studies have indicated that individuals with shorter blood telomeres may be at a higher risk of developing various types of cancer. There is increasing evidence that the study of the alterations in telomere length may improve cancer prognosis. The aim of the present study was to verify the use of telomere length parameters in the diagnostics of breast cancer stage. Telomere length was analyzed in the blood leukocytes of 52 patients with breast cancer relative to 47 control subjects using quantitative polymerase chain reaction. The effects of stage, grade, estrogen receptor, progesterone receptor and human epidermal growth factor 2 (HER2) status were assessed. The current study demonstrated that the average telomeric sequence length was significantly shorter in leukocytes from individuals diagnosed with a more severe stage of breast cancer (T2N1M0) than in leukocytes in the early stages of the disease (T1N0M0) (P=0.0207). Furthermore, the data indicated that telomeres in leukocytes derived from patients with HER2+ breast cancer were significantly longer compared with those with the HER2− type (P=0.0347). These results suggest that the assessment of telomeres in blood leukocytes may, at least partially, correspond with breast cancer staging and HER2 receptor status.
- Published
- 2016
- Full Text
- View/download PDF
29. hTERT promoter methylation status in peripheral blood leukocytes as a molecular marker of head and neck cancer progression
- Author
-
Agnieszka, Sobecka, Wiktoria, Blaszczak, Wojciech, Barczak, Pawel, Golusinski, Blazej, Rubis, Michal M, Masternak, Wiktoria M, Suchorska, and Wojciech, Golusinski
- Subjects
Adult ,Aged, 80 and over ,Male ,Sequence Analysis, DNA ,DNA Methylation ,Middle Aged ,Head and Neck Neoplasms ,Case-Control Studies ,Disease Progression ,Leukocytes ,Humans ,CpG Islands ,Female ,Promoter Regions, Genetic ,Telomerase ,Aged - Abstract
Cancer cells, including head and neck cancer cell carcinoma (HNSCC), are characterized by an increased telomerase activity. This enzymatic complex is active in approximately 80-90% of all malignancies, and is regulated by various factors, including methylation status of hTERT gene promoter. hTERT methylation pattern has been thoroughly studied so far. It was proved that hTERT is aberrantly methylated in tumor tissue versus healthy counterparts. However, such effect has not yet been investigated in PBLs (peripheral blood leukocytes) of cancer patients. The aim of this study was to analyze the hTERT gene promoter methylation status in blood leukocytes. DNA was extracted from PBL of 92 patients with histologically diagnosed HNSCC and 53 healthy controls. Methylation status of whole hTERT promoter fragment with independent analysis of each 19 CpG sites was performed using bisulfide conversion technique followed by sequencing of PCR products. Not significant (p = 0.0532) differences in the general frequency of hTERT CpG sites methylation were detected between patients and healthy controls. However, it was discovered that some of analyzed positions (CpG islands: 1 [p = 0.0235], 5 [p = 0.0462], 8 [p = 0.0343]) are significantly more often methylated in HNSCC patients than in controls. The opposite finding was observed in case of CpG position 2 (p = 0.0210). Furthermore, closer analysis of single CpG positions revealed differences in methylation status dependent on anatomical site and TNM classification. To conclude, hTERT promoter methylation status (general or single CpG sites) would be considered as a molecular markers of HNSCC diagnostics.
- Published
- 2018
30. Tissue and serum microRNA profile of oral squamous cell carcinoma patients
- Author
-
Wojciech Barczak, Wiktoria Maria Suchorska, Agnieszka Sobecka, Berta Victoria, Wojciech Golusiński, Yury O. Nunez Lopez, Michal M. Masternak, Augusto Schneider, and Paweł Golusiński
- Subjects
Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Science ,Cell ,Article ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,microRNA ,Biomarkers, Tumor ,Carcinoma ,Humans ,Medicine ,Aged ,Regulation of gene expression ,Multidisciplinary ,Sequence Analysis, RNA ,business.industry ,Gene Expression Profiling ,Head and neck cancer ,RNA ,Middle Aged ,medicine.disease ,Epithelium ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,stomatognathic diseases ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Carcinoma, Squamous Cell ,Female ,Mouth Neoplasms ,business - Abstract
Head and neck cancer is characterized by malignant tumors arising from the epithelium covering the upper aerodigestive tract, and the majority of these epithelial malignancies are squamous cell carcinomas (SCCs) of the oral cavity (OSCCs). The aim of the current work was to identify miRNAs regulated in OSCC cancerous tissue when compared to a healthy adjacent tissue and to verify the presence of the same miRNAs in the circulation of these patients. For that serum samples and biopsies of healthy and tumor tissues were collected from five patients diagnosed with OSCC of the oral cavity, RNA was extracted from these samples and microRNAs libraries were prepared and sequenced. A total 255 miRNAs were identified in tissue and 381 different miRNAs were identified in serum samples. When comparing the miRNA expression between tumor and healthy tissue we identified 48 miRNAs (25 down- and 23 up-regulated) that were differentially expressed (FDR
- Published
- 2018
- Full Text
- View/download PDF
31. Association of DNA repair genes polymorphisms and mutations with increased risk of head and neck cancer: a review
- Author
-
Anna Wegner, Wojciech Golusiński, Wiktoria Maria Suchorska, Agata Dylawerska, and Wojciech Barczak
- Subjects
0301 basic medicine ,Genome instability ,Cancer Research ,medicine.medical_specialty ,DNA Repair ,DNA repair ,DNA damage ,Review Article ,03 medical and health sciences ,0302 clinical medicine ,Radioresistance ,Internal medicine ,medicine ,Humans ,Head and neck cancer ,Genetics ,Hematology ,Polymorphism, Genetic ,business.industry ,Squamous Cell Carcinoma of Head and Neck ,General Medicine ,medicine.disease ,Head and neck squamous-cell carcinoma ,Cancer susceptibility ,030104 developmental biology ,Oncology ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Cancer cell ,Mutation ,Cancer research ,Carcinoma, Squamous Cell ,business ,Polymorphisms ,DNA Damage - Abstract
DNA repair mechanisms allow maintain genomic stability and proper functioning within the cells. Any aberrations may cause an increased risk of many diseases such as cancer. The most crucial risk factors for head and neck squamous cell carcinoma are behavioral factors, predominantly chronic exposure to tobacco, alcohol addiction, and infection with human papillomavirus or Epstein–Barr virus. These agents can induce DNA damage; therefore, cells must activate appropriate mechanisms in order to function correctly. Cancer cells are marked with genomic instability, which is associated with a greater tendency for the accumulation of a DNA damage and increased chemo- and radioresistance. Multiple studies have assessed the correlation of increased head and neck cancer (HNC) risk with polymorphism in the DNA repair genes. However, they suggest that interaction of DNA repair genes mutations with susceptibility to HNC depends on a patient’s race and risk factors, especially tobacco smoking. Further identification of these sequence variations must be performed. In this review, we discuss the current knowledge about the DNA repair genes mutations and polymorphisms associated with the high risk of head and neck treatment.
- Published
- 2017
32. Clinical value of monoclonal antibodies and tyrosine kinase inhibitors in the treatment of head and neck squamous cell carcinoma
- Author
-
Wiktoria Blaszczak, Wojciech Golusiński, Anna Wegner, Wiktoria Maria Suchorska, and Wojciech Barczak
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,medicine.drug_class ,medicine.medical_treatment ,Context (language use) ,Review Article ,Biology ,Monoclonal antibody ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,Humans ,Epidermal growth factor receptor ,Head and neck cancer ,Protein Kinase Inhibitors ,mAb ,Cetuximab ,Squamous Cell Carcinoma of Head and Neck ,Antibodies, Monoclonal ,Hematology ,General Medicine ,medicine.disease ,TKI ,Head and neck squamous-cell carcinoma ,030104 developmental biology ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Carcinoma, Squamous Cell ,biology.protein ,Therapy ,Tyrosine kinase ,medicine.drug - Abstract
Head and neck squamous cell carcinoma (HNSCC) is a heterogeneous group of malignant tumours that affects over 500,000 patients per year. Treatment failure is generally due to the heterogeneity of these tumours and to the serious adverse effects associated with treatment. Immunological system impairment, which is common in HNSCC, further contributes to treatment failure by mediating tumour escape mechanisms. To date, the only clinically approved targeted therapy agent is cetuximab, a monoclonal antibody (mAb) that binds to, and inhibits, epidermal growth factor receptor, which is widely overexpressed in HNSCC. Cetuximab has been proven to induce antibody-dependent cellular cytotoxicity, further magnifying its therapeutic effect. DNA sequencing of HNSCC cells has identified the presence of mutated genes, thus making their protein products potential targets for therapeutic inhibition. Immune mechanisms have been found to have a significant impact on carcinogenesis, thus providing the rationale to support efforts to identify anticancer compounds with immunomodulatory properties. In the context of the rapid development of novel targeted agents, the aim of the present paper is to review our current understanding of HNSCC and to review the novel anticancer agents (mAbs and TKIs) introduced in recent years, including an assessment of their efficacy and mechanisms of action.
- Published
- 2017
- Full Text
- View/download PDF
33. Vitamin C as a Modulator of the Response to Cancer Therapy
- Author
-
Przemysław Kopczyński, Błażej Rubiś, Wiktoria Blaszczak, Julia Masternak, Wojciech Barczak, and Anatoly Zhitkovich
- Subjects
vitamin C ,Pharmaceutical Science ,Review ,Ascorbic Acid ,Pharmacology ,chemotherapy ,medicine.disease_cause ,Analytical Chemistry ,lcsh:QD241-441 ,03 medical and health sciences ,0302 clinical medicine ,lcsh:Organic chemistry ,Neoplasms ,Drug Discovery ,medicine ,Animals ,Humans ,cancer ,oxidative stress ,Glycolysis ,Physical and Theoretical Chemistry ,030304 developmental biology ,0303 health sciences ,Vitamin C ,hypoxia ,Chemistry ,Organic Chemistry ,Cancer ,Drug Synergism ,ROS ,Metabolism ,ascorbate ,medicine.disease ,Ascorbic acid ,Combined Modality Therapy ,Treatment Outcome ,Chemistry (miscellaneous) ,Anaerobic glycolysis ,030220 oncology & carcinogenesis ,Cancer cell ,cancer therapy ,Molecular Medicine ,Reactive Oxygen Species ,Oxidation-Reduction ,Oxidative stress - Abstract
Ascorbic acid (vitamin C) has been gaining attention as a potential treatment for human malignancies. Various experimental studies have shown the ability of pharmacological doses of vitamin C alone or in combinations with clinically used drugs to exert beneficial effects in various models of human cancers. Cytotoxicity of high doses of vitamin C in cancer cells appears to be related to excessive reactive oxygen species generation and the resulting suppression of the energy production via glycolysis. A hallmark of cancer cells is a strongly upregulated aerobic glycolysis, which elevates its relative importance as a source of ATP (Adenosine 5′-triphosphate). Aerobic glycolysis is maintained by a highly increased uptake of glucose, which is made possible by the upregulated expression of its transporters, such as GLUT-1, GLUT-3, and GLUT-4. These proteins can also transport the oxidized form of vitamin C, dehydroascorbate, permitting its preferential uptake by cancer cells with the subsequent depletion of critical cellular reducers as a result of ascorbate formation. Ascorbate also has a potential to affect other aspects of cancer cell metabolism due to its ability to promote reduction of iron(III) to iron(II) in numerous cellular metalloenzymes. Among iron-dependent dioxygenases, important targets for stimulation by vitamin C in cancer include prolyl hydroxylases targeting the hypoxia-inducible factors HIF-1/HIF-2 and histone and DNA demethylases. Altered metabolism of cancer cells by vitamin C can be beneficial by itself and promote activity of specific drugs.
- Published
- 2019
- Full Text
- View/download PDF
34. hTERT C250T promoter mutation and telomere length as a molecular markers of cancer progression in patients with head and neck cancer
- Author
-
Piotr Machczyński, Wiktoria Maria Suchorska, Agnieszka Sobecka, Karolina Anna Bednarowicz, Wojciech Golusiński, Michal M. Masternak, Paweł Golusiński, Blazej Rubis, and Wojciech Barczak
- Subjects
0301 basic medicine ,Oncology ,Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Telomerase ,DNA Mutational Analysis ,Biology ,medicine.disease_cause ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,Telomerase reverse transcriptase ,Promoter Regions, Genetic ,neoplasms ,Molecular Biology ,Alleles ,Aged ,Neoplasm Staging ,Aged, 80 and over ,Cancer ,Telomere Homeostasis ,Middle Aged ,Telomere ,medicine.disease ,Molecular medicine ,stomatognathic diseases ,030104 developmental biology ,Real-time polymerase chain reaction ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Cancer cell ,Mutation ,Cancer research ,Disease Progression ,Molecular Medicine ,Female ,Carcinogenesis - Abstract
Squamous cell carcinoma of the head and neck (HNSCC) is the sixth leading cause of cancer worldwide, representing over half a million incidents every year. Cancer cells, including HNSCC, are characterized by increased telomerase activity. This enzymatic complex is active in ~90% of all cancer types and is responsible for the lengthening of telomeres. Highly recurrent point mutations in the human telomerase reverse transcriptase (hTERT) promoter have recently been reported in a number of human neoplasms. The aim of the present study was to analyze the prevalence of the hTERT promoter C250T mutation and telomere length in the blood leukocytes of 61 patients with HNSCC and 49 healthy individuals. Quantitative polymerase chain reaction identified the hTERT promoter mutation in 36% of patients with HNSCC. To the best of our knowledge this is first report indicating the presence of shorter telomeres in early stage tumors. In addition, the results suggest that the C250T hTERT promoter mutation and telomere length assessment may serve as important molecular markers of HNSCC progression.
- Published
- 2016
35. Telomere shortening in Down syndrome patients--when does it start?
- Author
-
Aleksandra Gruszecka, Błażej Rubiś, Aleksandra Romaniuk, Wojciech Barczak, Natalia Lipińska, Dorota Cudziło, Natalia Rozwadowska, Przemysław Kopczyński, and Ewa Toton
- Subjects
Premature aging ,Male ,Down syndrome ,Adolescent ,Population ,Aneuploidy ,Physiology ,Biology ,Young Adult ,Genetics ,medicine ,Humans ,education ,Child ,Molecular Biology ,Telomere Shortening ,education.field_of_study ,Cell Biology ,General Medicine ,Telomere ,medicine.disease ,Menopause ,Case-Control Studies ,Child, Preschool ,Female ,Molecular Genetics/Genomics/Epigenetics ,Down Syndrome ,Trisomy ,Chromosome 21 - Abstract
Down syndrome (DS) is one of the most common aneuploidy. In general population, its prevalence is 1:600-1:800 live births. It is caused by a trisomy of chromosome 21. DS is phenotypically manifested by premature aging, upward slant to the eyes, epicanthus, flattened face, and poor muscle tone. In addition to physical changes, this syndrome is characterized by early onset of diseases specific to old age, such as Alzheimer's disease, vision and hearing problems, and precocious menopause. Since DS symptoms include premature aging, the shortening of telomeres might be one of the markers of cellular aging. Consequently, the aim of the study was to determine the length of the telomeres in leukocytes from the blood of juvenile patients with DS (n=68) compared to an age-matched control group (n=56) and also to determine the diagnostic or predictive value for this parameter. We show that, for the first time, in juveniles, the average relative telomere length in studied subjects is significantly longer than in the control group (50.46 vs. 40.56, respectively arbitrary units [AU]; p=0.0026). The results provide interesting basis for further research to determine the causes and consequences of telomere maintaining and the dynamics of this process in patients with DS.
- Published
- 2015
36. Study of ABCB1 polymorphism frequency in breast cancer patients from Poland
- Author
-
Robert Gryczka, Karolina Morze, Sylwia Grodecka-Gazdecka, Paweł Jagielski, Paweł Białek, Maria Rybczynska, Wojciech Barczak, Mariusz Łaciński, Anna Czernikiewicz, Błażej Rubiś, Przemyslaw M. Mrozikiewicz, Natalia Lisiak, Hanna Hołysz, Anna Polrolniczak, Zuzanna Kanduła, Aneta Wojewoda, and Katarzyna Perz
- Subjects
Heterozygote ,ATP Binding Cassette Transporter, Subfamily B ,Population ,Breast Neoplasms ,Biology ,medicine.disease_cause ,Real-Time Polymerase Chain Reaction ,Breast cancer ,Gene Frequency ,Risk Factors ,Genotype ,medicine ,Odds Ratio ,Humans ,Genetic Predisposition to Disease ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,Amplified Fragment Length Polymorphism Analysis ,education ,Gene ,Aged ,Pharmacology ,Genetics ,education.field_of_study ,Chi-Square Distribution ,Polymorphism, Genetic ,Homozygote ,General Medicine ,Sequence Analysis, DNA ,Middle Aged ,medicine.disease ,Prognosis ,Molecular biology ,Genotype frequency ,Restriction enzyme ,Phenotype ,Case-Control Studies ,Female ,Poland ,Restriction fragment length polymorphism ,Carcinogenesis ,Polymorphism, Restriction Fragment Length - Abstract
Background The accumulation of mutagenic substances in the human body may result in DNA metabolism disruption followed by carcinogenesis. As a consequence of mutations in the genes coding for transmembrane protein pumps, the intracellular concentration of xenobiotics may significantly increase. This, in turn, may provoke altered risk for cancer development. The gene known to be the most relevant in the transport of numerous compounds is ABCB1 (also known as MDR1 ). Numerous mutations and polymorphisms that affect the encoded protein's (PgP) function were identified in this gene. The aim of the study was to define the frequency of 2677G > A,T and 3435C > T polymorphisms in a population of Polish breast cancer patients and to estimate their contribution to cancer development. Methods The polymorphism frequency analysis (209 patients vs. 202 control subjects) was performed either by allele-specific amplification (2677G > A,T) or by restriction fragment length polymorphism (RFLP) using the SAU3AI restriction enzyme (3435C > T) followed by verification with hybridization probe assays in a Real-Time system and sequencing. Results In the control group the frequency of individual 2677 genotypes was: wild homozygous GG = 34%, heterozygous G/T or G/A = 52.5% and variant homozygous AA or TT = 13.5%, while the genotype frequency in the group of studied patients was 43.5, 44.5 and 12%, respectively. In the control group, the frequency of individual 3435 genotypes was: CC = 25.4%, CT = 50.2%, TT = 24.4%, while the genotype frequency in the group of studied patients was 23, 46 and 31%, respectively. Conclusions Thus, no significant differences in the studied polymorphism frequencies were observed. It is then suggested that the studied polymorphisms, although probably good candidates in other tissue cancer types, might not be good predictive factors in breast cancer risk or development in Caucasians.
- Published
- 2011
37. [Nr 91] TRIM28/KAP1 protein controls self-renewal of human induced pluripotent stem cells
- Author
-
Wojciech Barczak, Maciej Wiznerowicz, and Katarzyna Kulcenty
- Subjects
Cancer Research ,Induced stem cells ,TRIM28 ,Oncology ,Human Induced Pluripotent Stem Cells ,Self renewal ,Biology ,Cell biology - Published
- 2013
- Full Text
- View/download PDF
38. Universal Real-Time PCR-Based Assay for Lentiviral Titration
- Author
-
Błażej Rubiś, Wiktoria Maria Suchorska, Wojciech Barczak, and Katarzyna Kulcenty
- Subjects
Genetic Vectors ,Green Fluorescent Proteins ,Gene Expression ,Bioengineering ,Regulatory Sequences, Nucleic Acid ,Real-Time Polymerase Chain Reaction ,Applied Microbiology and Biotechnology ,Biochemistry ,Poor quality ,Viral vector ,Titration methods ,Transduction (genetics) ,Transduction, Genetic ,Humans ,Stable gene ,Molecular Biology ,biology ,Research ,Albumin ,Woodchuck hepatitis virus ,Lentivirus ,biology.organism_classification ,Virology ,WPRE ,Titer ,qPCR ,Real-time polymerase chain reaction ,Research studies ,HeLa Cells ,Biotechnology - Abstract
Lentiviral vectors are efficient vehicles for stable gene transfer in both dividing and non-dividing cells. This feature among others makes lentiviral vectors a powerful tool in molecular research. However, the use of lentiviruses in research studies and clinical trials requires a precise and validated titration method. In this study, we describe a qPCR-based approach for estimation of lentiviral vector titer (pLV-THM-GFP). The use of WPRE (Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element) and albumin genes as templates for an SYBR green-based real-time qPCR method allows for a rapid, sensitive, reproducible, and accurate assessment of lentiviral copy number at an integrated lentiviral DNA level. Furthermore, this optimization enables measurement of lentiviral concentration even in very poor quality and small quantity material. Consequently, this approach provides researchers with a tool to perform low-cost assessment with highly repeatable results.
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.