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The structure of water molecules in contact with zwitterionic lipid molecules is of great biological relevance, because biological membranes are largely composed of such lipids. The interaction of the interfacial water molecules with the amphiphilic lipid molecules drives the formation of membranes and greatly influences various processes at the membrane surface, as the field that arises from the aligned interfacial water molecules masks the charges of the lipid headgroups from the approaching metabolites. To increase our understanding of the influence of water molecules on biological processes we study their structure at the interface using sum-frequency generation spectroscopy and molecular dynamics simulations. Interestingly, we find that water molecules at zwitterionic lipid molecules are mainly oriented by the field arising between the two oppositely charged molecular moieties within the lipid headgroups.

A combined experimental and theoretical method to simultaneously determine diffusivity and free-energy profiles of particles that penetrate into inhomogeneous hydrogel systems is presented. As the only input, arbitrarily normalized concentration profiles from fluorescence intensity data of labeled tracer particles for different penetration times are needed. The method is applied to dextran molecules of varying size that penetrate into hydrogels of polyethylene-glycol chains with different lengths that are covalently cross-linked by hyperbranched polyglycerol hubs. Extracted dextran bulk diffusivities agree well with fluorescence correlation spectroscopy data obtained separately. Empirical scaling laws for dextran diffusivities and free energies inside the hydrogel are identified as a function of the dextran mass. An elastic free-volume model that includes dextran as well as polyethylene-glycol linker flexibility quantitively describes the repulsive dextran-hydrogel interaction free energy, which is of steric origin, and furthermore suggests that the hydrogel mesh-size distribution is rather broad and particle penetration is dominated by large hydrogel pores. Particle penetration into hydrogels for steric particle-hydrogel interactions is thus suggested to be governed by an elastic size-filtering mechanism that involves the tail of the hydrogel pore-size distribution.

The properties of biological interfaces play a role in all processes where organisms interact with their environment. The mucus barrier encountered in higher organisms is a prominent example of such an interface and regulates passage of nutrients and pathogens. On a molecular level, cellular membranes composed of lipid bilayers represent another fundamental biological interface, which is almost always in contact with solutions containing ions or other solutes. This thesis studies the properties of these two interfaces and the interactions with their environment. First, the barrier properties of an uncharged mucus analogous hydrogel are analyzed based on non-normalized experimental concentration profiles of penetrating tracer molecules. For this, a numerical model of the diffusion process is developed that allows for the extraction of diffusion constants of the tracer particles in the bulk solution and in the hydrogel, as well as free energy differences from which partition coefficients are computed. The computational extraction method is validated by comparison of the obtained diffusion constants with results from experiments and with scaling laws from polymer theory. Based on the extracted partition coefficients a free volume model is developed, which takes into account the tracer and hydrogel flexibility. The model suggests a broad pore size distribution of the unordered hydrogel, in which the larger pores are found to predominantly determine the partitioning process, a phenomenon which might be general to unordered biological hydrogels like mucus. The second part of this thesis covers the interactions of lipid bilayers in contact with solutions containing different co-solutes or ions, which are analyzed using atomistic molecular dynamics simulations. The hydration repulsion of lipid bilayers, commonly observed for nanometer separations, is found to be universally increased by the presence of co-solutes. This effect is quantitatively reproduced from experiments, thus validating the modeling approach. The added repulsion is in a next step modeled as an osmotic pressure afforded by the co-solutes and further augmented by the incorporation of solute-solute and solute-lipid interactions. Finally, ionic adsorption to the lipid interface is investigated in detail by computation of the surface potential obtained from a combination of equilibrium and non-equilibrium simulations in the presence of an electric field. By developing an electrostatic continuum model, which additionally incorporates the presence of minute amounts of negatively charged surface active impurities, initially counterintuitive experimental data is unified for the first time with simulation results. The assumption of contaminations existing in experiments has previously explained a range of other puzzling surface properties and is found to also allow for in detail modeling of electrophoresis experiments on lipid bilayers in ionic solutions.

Dielectric water properties, which significantly change in confinement, determine electrostatic interactions and thereby influence all molecular forces and chemical reactions. We present comparative simulations of water between graphene sheets, decanol monolayers, and phospholipid and glycolipid bilayers. Generally, dielectric profiles strongly differ in perpendicular and parallel surface directions and for large surface separation decay to the bulk value 1-2 nm away from the surface. Polar surface groups enhance the local interfacial dielectric response and for phospholipid bilayers induce a giant parallel contribution. A mapping on a box model with asymptotically determined effective water layer widths demonstrates that the perpendicular effective dielectric constant for all systems decreases for confinement below a nanometer, while the parallel one stays rather constant. The confinement-dependent perpendicular effective dielectric constant for graphene is in agreement with experimental data only if the effective water layer width is suitably adjusted. The interactions between two charges at small separation depend on the product of parallel and perpendicular effective water dielectric components; for large separation the interactions depend on the confining medium. For metallic confining media the interactions at large separation decay exponentially with a decay length that depends on the ratio of the effective parallel and perpendicular water dielectric components.

The influence of the co-solutes TMAO, urea, and NaCl on the hydration repulsion between lipid membranes is investigated in a combined experimental/simulation approach. Pressure-hydration curves obtained via sorption experiments reveal that the repulsion significantly increases when the membranes are loaded with co-solutes, most strongly for TMAO. As a result, the co-solutes retain additional water molecules and therefore provide membranes with a fluid and more physiological environment. The experimental data are quantitatively reproduced in complementary solvent-explicit atomistic molecular dynamics simulations, which yield the chemical potential of water. Simulation analysis reveals that the additional repulsion arises from the osmotic pressure generated by the co-solutes, an effect which is maximal for TMAO, due to its unfavorable interactions with the lipid headgroup layer and its extraordinarily high osmotic coefficient.

Most land-living organisms regularly experience dehydration. In nature, one commonly applied strategy to protect against this osmotic stress is to introduce small polar molecules with low vapor pressure, commonly called osmolytes. Two examples of naturally occurring small polar compounds are urea and trimethylamine N-oxide (TMAO), which are known to have counteracting effects on protein stability. In this work, we investigate the effects of urea and TMAO on lipid self-assembly at varying water contents, focusing on dehydrated conditions. By using complementary experimental techniques, including sorption microcalorimetry, NMR, and X-ray scattering, together with molecular dynamics simulations in model systems composed of phosphatidylcholine lipids, water, and solute, we characterize interactions and self-assembly over a large range of hydration conditions. It is shown that urea and TMAO show qualitatively similar effects on lipid self-assembly at high water contents, whereas they have clearly different effects in dehydrated conditions. The latter can be explained by differences in the molecular interactions between the solutes and the lipid headgroups. TMAO is repelled from the bilayer interface, and it is thereby expelled from lipid lamellar systems with low water contents and narrow inter-bilayer regions. In these conditions, TMAO shows no effect on the lipid phase behavior. Urea, on the other hand, shows a slight affinity for the lipid headgroup layer, and it is present in the lipid lamellar system at all water contents. As a result, urea may exchange with water in dry conditions and thereby prevent dehydration-induced phase transitions. In nature, urea and TMAO are sometimes found together in the same organisms and it is possible that their combined effect is to both protect lipid membranes against dehydration and still avoid denaturation of proteins.