19 results on '"Xiao-Hong Bao"'
Search Results
2. Olink proteomics profiling platform reveals non-invasive inflammatory related protein biomarkers in autism spectrum disorder
- Author
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Xiao-Hong Bao, Bao-Fu Chen, Jun Liu, Yu-Hua Tan, Shu Chen, Fan Zhang, Hong-Sheng Lu, and Ji-Cheng Li
- Subjects
autism spectrum disorder ,biomarkers ,inflammation ,proteomic ,Olink ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
BackgroundOwing to the lack of valid biomarkers, the diagnosis of autism spectrum disorder (ASD) diagnosis relies solely on the behavioral phenotypes of children. Several researchers have suggested an association between ASD and inflammation; however, the complex relationship between the two is unelucidated to date. Therefore, the current study aims to comprehensively identify novel circulating ASD inflammatory biomarkers.MethodsOlink proteomics was applied to compare the plasma inflammation-related protein changes in a group of the healthy children (HC, n = 33) and another with ASD (n = 31). The areas under the receiver operating characteristic curves (AUCs) of the differentially expressed proteins (DEPs) were calculated. The functional analysis of the DEPs was performed using Gene Ontology and Kyoto Encyclopedia Genes and Genomes. Pearson correlation tests were used employed to analyze the correlation between the DEPs and clinical features.ResultsA total of 13 DEPs were significantly up-regulated in the ASD group compared with the HC group. The four proteins, namely, STAMBP, ST1A1, SIRT2, and MMP-10 demonstrated good diagnostic accuracy with the corresponding AUCs (95% confidence interval, CI) of 0.7218 (0.5946–0.8489), 0.7107 (0.5827–0.8387), 0.7016 (0.5713–0.8319), and 0.7006 (0.568–0.8332). Each panel of STAMBP and any other differential protein demonstrated a better classification performance [AUC values from 0.7147 (0.5858–0.8436, STAMBP/AXIN1) to 0.7681 (0.6496–0.8867, STAMBP/MMP-10)]. These DEP profiles were enriched in immune and inflammatory response pathways, including TNF and NOD-like receptor signaling pathways. The interaction between STAMBP and SIRT2 (R = 0.97, p = 8.52 × 10−39) was found to be the most significant. In addition, several DEPs related to clinical features in patients with ASD, particularly AXIN1 (R = 0.36, p = 0.006), SIRT2 (R = 0.34, p = 0.010) and STAMBP (R = 0.34, p = 0.010), were positively correlated with age and parity, indicating that older age and higher parity may be the inflammation-related clinical factors in ASD.ConclusionInflammation plays a crucial role in ASD, and the up-regulated inflammatory proteins may serve as potential early diagnostic biomarkers for ASD.
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- 2023
- Full Text
- View/download PDF
3. Inhibition of the growth factor MDK/midkine by a novel small molecule compound to treat non-small cell lung cancer.
- Author
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Huifang Hao, Yutaka Maeda, Takuya Fukazawa, Tomoki Yamatsuji, Munenori Takaoka, Xiao-Hong Bao, Junji Matsuoka, Tatsuo Okui, Tsuyoshi Shimo, Nagio Takigawa, Yasuko Tomono, Motowo Nakajima, Iris M Fink-Baldauf, Sandra Nelson, William Seibel, Ruben Papoian, Jeffrey A Whitsett, and Yoshio Naomoto
- Subjects
Medicine ,Science - Abstract
Midkine (MDK) is a heparin-binding growth factor that is highly expressed in many malignant tumors, including lung cancers. MDK activates the PI3K pathway and induces anti-apoptotic activity, in turn enhancing the survival of tumors. Therefore, the inhibition of MDK is considered a potential strategy for cancer therapy. In the present study, we demonstrate a novel small molecule compound (iMDK) that targets MDK. iMDK inhibited the cell growth of MDK-positive H441 lung adenocarcinoma cells that harbor an oncogenic KRAS mutation and H520 squamous cell lung cancer cells, both of which are types of untreatable lung cancer. However, iMDK did not reduce the cell viability of MDK-negative A549 lung adenocarcinoma cells or normal human lung fibroblast (NHLF) cells indicating its specificity. iMDK suppressed the endogenous expression of MDK but not that of other growth factors such as PTN or VEGF. iMDK suppressed the growth of H441 cells by inhibiting the PI3K pathway and inducing apoptosis. Systemic administration of iMDK significantly inhibited tumor growth in a xenograft mouse model in vivo. Inhibition of MDK with iMDK provides a potential therapeutic approach for the treatment of lung cancers that are driven by MDK.
- Published
- 2013
- Full Text
- View/download PDF
4. Clinical effects of warmed humidified carbon dioxide insufflation in infants undergoing major laparoscopic surgery
- Author
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Meng-Meng, Tong, Xue-Jun, Xu, and Xiao-Hong, Bao
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- 2019
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5. Differentiating Curculigo Orchioides Rhizoma and Curculigo glabrescens Rhizoma by a Unique New Compound
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Yu-shi Liu, Yi-ping Guo, Juan-ru Liu, Xiao-hong Bao, Juan Zhou, Jia Pan, Fei Liu, Juan Liu, Zhong Wu, and Li Guo
- Abstract
Background: Market research found that Curculigo glabrescens Rhizoma (CGR) is the major counterfeit of the Curculigo orchioides Rhizoma (COR). C. orchioides Gaertn and C. glabrescens (Ridl.) Merr. belong to the same family and genus, with close plant relationships and high genetic similarity, and rhizomes of the herbs part have less distinguished characteristics, which make the identification difficult.Methods: In order to distinguish COR from CGR more accurately and conveniently, HPLC method was used to establish a characteristic chromatogram of the two herbs, and a unique component in CGR was discovered for first time. Based on that, the characteristic component was systematically separated and purified.Results: The unique component was a new neolignans and named glabrescenin, which could specifically distinguish COR from CGR. The HPLC method we used could establish a characteristic chromatography of CGR.Conclusion: This study was conducive to the quality control of Curculigo, and could promote the correct application of genuine COR in clinical practice.
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- 2020
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6. Information Security Risk Analysis of Airborne Communication Network
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Shi-Dong Luo, Yu Xin, and Xiao-Hong Bao
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Risk analysis ,Risk analysis (engineering) ,Computer science ,business.industry ,Reliability (computer networking) ,Attack tree ,Key (cryptography) ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Information security ,Complex network ,business ,Telecommunications network ,Risk management - Abstract
Under the conditions of informationization and networked operations, the airborne communication network faces serious threats. Any unit under the network system needs to acquire and share real-time information. In this process, the information security problem of the airborne communication network is particularly important, ensuring the confidentiality, integrity and availability of the transmitted information can largely guarantee the smooth completion of the task. In view of this, this paper uses the decision of the key nodes of complex networks and the risk analysis method of the attack tree model to evaluate the information security of the airborne communication network. This method helps decision-makers find important communication nodes in the airborne communication network and the attack methods most likely to be exploited by attackers, then taking targeted defense measures.
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- 2019
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7. Study on the Structure of a Horizontal Shear Line over the Tibetan Plateau Based on CRA-Interim Datasets and Its Comparison with ERA-Interim Datasets
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Xiu-ping, YAO, primary, Shuo, ZHANG, additional, Xiao-hong, BAO, additional, Chun-xiang, SHI, additional, and Jing-wei, LIU, additional
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- 2020
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8. [Study on Quality Evaluation of Ophiopogonis Radix in Sichuan]
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Fa-ming, Wu, Hai-yan, Yang, Rui-shan, Yang, Min, Li, Xiao-hong, Bao, and Juan, Zhou
- Abstract
To evaluate the quality of Ophiopogonis Radix from produce area, circulation link and clinical application in Sichuan, and to provide the theoretical basis for the quality control of Ophiopogonis Radix in Sichuan.105 samples were collected from different produce area, market, factory of decoction pieces, drugstore in Sichuan. The content of moisture,total ash, extractum, total saponin, heavy metal, harmful element, pesticide residues, sulfur dioxide were measured by the methods which recorded in Chinese pharmacopoeia. The content of ophiopogonin D, methylophiopogonanone A, methylophiopogonanone B were measured by HPLC.The content of moisture, total ash, extractum, total saponin in 105 samples Ophiopogonis Radix in Sichuan were at 5. 7%~ 17. 9%,0. 9% ~ 3. 4%,68. 7% ~ 95. 1%,0. 12% ~ 0. 57%,respectively. Over standard rate of sulfur dioxide was 23. 81%. The content of heavy metal and harmful element was conform to the limitation requirement of Chinese pharmacopoeia. Three kinds of organic pesticide had not been checked out. The content of ophiopogonin D, methylophiopogonanone A,methylophiopogonanone B were at 0. 04~ 0. 30 mg/kg,0. 0170 ~ 0. 0837 mg/kg,0. 0049 ~ 0. 0370 mg/kg, respectively.The quality of 105 samples are up to the requirement with the provisions of the Chinese pharmacopoeia. Actually,the mandatory standard was not perfect, especially lack of standard in security. It is suggested that strengthening supervision of sulfur dioxide and paclobutrazol residual according to the actual situation for ensuring the safe and effective of Ophiopogonis Radix in clinical application.
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- 2018
9. [HPLC simultaneous determination of contents of 5 saponin constituents in Ophiopogonis Radix]
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Fa-ming, Wu, Xiao-yang, Cai, Pan, Wang, Xiao-hong, Bao, Min, Li, and Juan, Zhou
- Subjects
Ophiopogon ,Saponins ,Plant Roots ,Chromatography, High Pressure Liquid ,Drugs, Chinese Herbal - Abstract
This research is to establish an HPLC method for the simultaneous determination of ophiopogonin D, ophiopogonin D', ophiopogonin C, deacetylophiopojaponin A and ophiogenin-3-O-α-L-rhamnosyl-(1--2)-β-D-glucoside in Ophiopogonis Radix. HPLC-ELSD analysis was performed on a Kromasil 100-5 C₁₈ column (4.6 mm x 250 mm, 5 µm), with the mobile phase of acetonitrile (A) -water (B) in gradient elution mode (0-45 min, 35%-55% A), at a flow rate of 1 mL · min⁻¹. The column temperature was 35 °C and the drift tube temperature was 100 °C in a gas flow rate of 3.0 L · min⁻¹. The result showed that baseline of all the 5 constituents was well separated, and every constituent had wide linearity range and good linear relation (r0.999). The recovery rate was between 95.75% and 103.1%. The new established method for simultaneous determination of saponin constituents in Ophiopogonis Radix was sensitive and has good, repeatability. It could be applied to quality evaluation of Ophiopogonis Radix.
- Published
- 2016
10. Oral administration of FAK inhibitor TAE226 inhibits the progression of peritoneal dissemination of colorectal cancer
- Author
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Tomoki Yamatsuji, Xiao Hong Bao, Hui Fang Hao, Kazufumi Sakurama, Yasuko Tomono, Munenori Takaoka, Takuya Fukazawa, Toshiyoshi Fujiwara, Toshiaki Ohara, Yoshio Naomoto, and Zhigang Wang
- Subjects
Male ,Colorectal cancer ,medicine.drug_class ,Morpholines ,Cell ,Biophysics ,Administration, Oral ,Biochemistry ,Tyrosine-kinase inhibitor ,Focal adhesion ,Mice ,Peritoneum ,In vivo ,medicine ,Animals ,Humans ,Neoplasm Invasiveness ,RNA, Small Interfering ,Protein Kinase Inhibitors ,Molecular Biology ,Cell Proliferation ,Mice, Inbred BALB C ,Cell growth ,business.industry ,TAE226 ,Focal adhesion kinase ,Cancer ,Cell Biology ,HCT116 Cells ,medicine.disease ,Colon cancer ,medicine.anatomical_structure ,Anti-proliferation ,Focal Adhesion Protein-Tyrosine Kinases ,Immunology ,Disease Progression ,Cancer research ,Prolonged survival ,Colorectal Neoplasms ,business ,Peritoneal dissemination - Abstract
Peritoneal dissemination is one of the most terrible types of colorectal cancer progression. Focal adhesion kinase (FAK) plays a crucial role in the biological processes of cancer, such as cell attachment, migration, proliferation and survival, all of which are essential for the progression of peritoneal dissemination. Since we and other groups have reported that the inhibition of FAK activity exhibited a potent anticancer effect in several cancer models, we hypothesized that TAE226, a novel ATP-competitive tyrosine kinase inhibitor designed to target FAK, can prevent the occurrence and progression of peritoneal dissemination. In vitro, TAE226 greatly inhibited the proliferation and migration of HCT116 colon cancer cells, while their adhesion on the matrix surface was minimally inhibited when FAK activity and expression was suppressed by TAE226 and siRNA. In vivo, when HCT116 cells were intraperitoneally inoculated in mice, the cells could attach to the peritoneum and begin to grow within 24 h regardless of the pretreatment of cells with TAE226 or FAK-siRNA, suggesting that FAK is not essential, at least for the initial integrin-matrix contact. Interestingly, the treatment of mice before and after inoculation significantly suppressed cell attachment to the peritoneum. Furthermore, oral administration of TAE226 greatly reduced the size of disseminated tumors and prolonged survival in tumor-bearing mice. Taken together, a possible strategy for inhibiting peritoneal dissemination by targeting FAK with TAE226 appears to be applicable through anti-proliferative and anti-invasion/anti-migration mechanisms.
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- 2012
11. IGF-IR and its inhibitors in gastrointestinal carcinomas (Review)
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Yasuhiro Shirakawa, Munenori Takaoka, Tomoki Yamatsuji, Yasuko Tomono, Junji Matsuoka, Xiao Hong Bao, Nobuyuki Watanabe, Kazuhiro Noma, Takayuki Motoki, Hui Fang Hao, Takuya Fukazawa, Kazufumi Sakurama, and Yoshio Naomoto
- Subjects
Cancer Research ,Oncogene ,medicine.drug_class ,Cancer ,Articles ,Biology ,Monoclonal antibody ,medicine.disease ,medicine.disease_cause ,Molecular medicine ,Tyrosine-kinase inhibitor ,Oncology ,Growth factor receptor ,medicine ,Cancer research ,Carcinogenesis ,Tyrosine kinase - Abstract
The type I insulin-like growth factor receptor (IGF-IR) and its associated signaling system play a significant role in tumorigenesis, tumor survival and progression, and cancer therapeutic resistance, and thus has provoked great interest as a promising target for cancer treatment. In this report we present the role of IGF-IR in gastrointestinal carcinomas whose pathology has been identified as tightly correlated with an abnormal expression and activation of IGF-IR. Reported data from experimental studies suggest the feasibility of targeted IGF-IR therapy in gastrointestinal carcinomas. Many types of inhibitors against IGF-IR have been developed. Inhibitors with anti-IGF-IR monoclonal antibodies and tyrosine kinase inhibitors currently undergoing preclinical and clinical evolution are also reviewed.
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- 2010
- Full Text
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12. Inhibition of the growth factor MDK/midkine by a novel small molecule compound to treat non-small cell lung cancer
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Tomoki Yamatsuji, Iris M. Fink-Baldauf, Sandra Nelson, Motowo Nakajima, Ruben Papoian, Munenori Takaoka, Jeffrey A. Whitsett, Huifang Hao, Nagio Takigawa, Yasuko Tomono, William L. Seibel, Yutaka Maeda, Tsuyoshi Shimo, Junji Matsuoka, Takuya Fukazawa, Yoshio Naomoto, Tatsuo Okui, and Xiao Hong Bao
- Subjects
Vascular Endothelial Growth Factor A ,Lung Neoplasms ,Mouse ,medicine.medical_treatment ,Cancer Treatment ,lcsh:Medicine ,Apoptosis ,Squamous Cell Lung Carcinoma ,Lung and Intrathoracic Tumors ,Mice ,Phosphatidylinositol 3-Kinases ,0302 clinical medicine ,Coumarins ,Carcinoma, Non-Small-Cell Lung ,RNA, Small Interfering ,lcsh:Science ,Midkine ,0303 health sciences ,Mice, Inbred BALB C ,Multidisciplinary ,biology ,Adenocarcinoma of the Lung ,Thoracic Surgery ,Animal Models ,3. Good health ,Tumor Burden ,Gene Expression Regulation, Neoplastic ,Oncology ,030220 oncology & carcinogenesis ,Adenocarcinoma ,Cytokines ,Medicine ,Female ,Signal Transduction ,Research Article ,Biotechnology ,Drugs and Devices ,Drug Research and Development ,Antineoplastic Agents ,03 medical and health sciences ,Model Organisms ,Cell Line, Tumor ,medicine ,Adenocarcinoma of the lung ,Animals ,Humans ,Nerve Growth Factors ,Lung cancer ,Biology ,PI3K/AKT/mTOR pathway ,030304 developmental biology ,Cell growth ,Growth factor ,lcsh:R ,Cancers and Neoplasms ,Neoplasms, Experimental ,Fibroblasts ,Chemotherapy and Drug Treatment ,medicine.disease ,Molecular biology ,Non-Small Cell Lung Cancer ,Molecular Weight ,Thiazoles ,Pharmacodynamics ,Cell culture ,Small Molecules ,biology.protein ,Surgery ,lcsh:Q ,Carrier Proteins - Abstract
Midkine (MDK) is a heparin-binding growth factor that is highly expressed in many malignant tumors, including lung cancers. MDK activates the PI3K pathway and induces anti-apoptotic activity, in turn enhancing the survival of tumors. Therefore, the inhibition of MDK is considered a potential strategy for cancer therapy. In the present study, we demonstrate a novel small molecule compound (iMDK) that targets MDK. iMDK inhibited the cell growth of MDK-positive H441 lung adenocarcinoma cells that harbor an oncogenic KRAS mutation and H520 squamous cell lung cancer cells, both of which are types of untreatable lung cancer. However, iMDK did not reduce the cell viability of MDK-negative A549 lung adenocarcinoma cells or normal human lung fibroblast (NHLF) cells indicating its specificity. iMDK suppressed the endogenous expression of MDK but not that of other growth factors such as PTN or VEGF. iMDK suppressed the growth of H441 cells by inhibiting the PI3K pathway and inducing apoptosis. Systemic administration of iMDK significantly inhibited tumor growth in a xenograft mouse model in vivo. Inhibition of MDK with iMDK provides a potential therapeutic approach for the treatment of lung cancers that are driven by MDK.
- Published
- 2013
13. Esophageal cancer exhibits resistance to a novel IGF-1R inhibitor NVP-AEW541 with maintained RAS-MAPK activity
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Xiao-Hong, Bao, Munenori, Takaoka, Hui-Fang, Hao, Zhi-Gang, Wang, Takuya, Fukazawa, Tomoki, Yamatsuji, Kazufumi, Sakurama, Dong-Sheng, Sun, Takeshi, Nagasaka, Toshiyoshi, Fujiwara, and Yoshio, Naomoto
- Subjects
Esophageal Neoplasms ,MAP Kinase Signaling System ,Cell Growth Processes ,Receptor, IGF Type 1 ,Phosphatidylinositol 3-Kinases ,Pyrimidines ,Drug Resistance, Neoplasm ,Cell Line, Tumor ,ras Proteins ,Humans ,Pyrroles ,raf Kinases ,Mitogen-Activated Protein Kinases ,Proto-Oncogene Proteins c-akt ,Phosphoinositide-3 Kinase Inhibitors - Abstract
To assess the effects of a novel type 1 insulin-like growth factor receptor (IGF-1R) inhibitor, NVP-AEW541, on cell proliferation and signal transduction of esophageal cancer.Cell proliferation assay and western blot were conducted to assess the antitumor effects of NVP-AEW541. Genetic modification of RAS by expression vector was applied for overexpression of mutant RAS.More than 2 μmol/l of NVP-AEW541 was required to effectively inhibit the proliferation of esophageal cancer. NVP-AEW541 potently blocked the activation of IGF-1R and protein kinase B (PKB, also known as AKT), but not of mitogen-activated protein kinase kinase (MEK) and extracellular-signal-regulated kinases (ERK). Active RAS was not reduced by NVP-AEW541 in esophageal cancer cells TE-1, suggesting that insensitivity of esophageal cancer to NVP-AEW541 is due to the maintained RAS-MAPK activity, which did not arise from RAS mutation. Moreover, the transduction of mutant RAS reduced the sensitivity of TE-1 cells to NVP-AEW541.Stimulation of RAS-MAPK pathway is associated with resistance to NVP-AEW541 in esophageal cancer. Combining NVP-AEW541 with inhibitors/antibodies against RAS-MAPK signaling molecules might be more effective for use against esophageal cancer.
- Published
- 2012
14. Antiproliferative effect of the HSP90 inhibitor NVP-AUY922 is determined by the expression of PTEN in esophageal cancer
- Author
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Hui Fang Hao, Yoshio Naomoto, Kazufumi Sakurama, Tomoki Yamatsuji, Nagio Takigawa, Toshiyoshi Fujiwara, Xiao Hong Bao, Takuya Fukazawa, Munenori Takaoka, and Motowo Nakajima
- Subjects
Cancer Research ,Esophageal Neoplasms ,Cell ,Blotting, Western ,Apoptosis ,Hsp90 inhibitor ,medicine ,Tumor Cells, Cultured ,PTEN ,Humans ,HSP90 Heat-Shock Proteins ,RNA, Small Interfering ,Protein kinase B ,Cell Proliferation ,biology ,Oncogene ,Cell growth ,PTEN Phosphohydrolase ,General Medicine ,Isoxazoles ,Resorcinols ,Cell cycle ,Molecular medicine ,medicine.anatomical_structure ,Oncology ,Cancer research ,biology.protein ,Carcinoma, Squamous Cell ,Proto-Oncogene Proteins c-akt - Abstract
Heat shock protein 90 (HSP90), a molecular chaperone, has provoked great interest as a promising molecular target for cancer treatment, due to its involvement in regulating the conformation, stability and functions of key oncogenic proteins. At present, a variety of chemical compounds targeting HSP90 have been developed and have shown convincing anti-neoplastic activity in various preclinical tumor models. The aim of our study was to evaluate the antitumor effects of a novel HSP90 inhibitor, NVP-AUY922, in esophageal squamous cancer cells (ESCC). Four ESCC cell lines (TE-1, TE-4, TE-8, TE-10) were examined. NVP-AUY922 potently inhibited the proliferation of ESCC, particularly in PTEN-null TE-4 cells with a 2-3 times lower IC50 than the other three cell lines. Western blot analysis showed that PTEN-null TE-4 cells exhibited higher AKT and ERK activity, which contribute to cell proliferation and survival. NVP-AUY922 significantly suppressed the activity of AKT and ERK in TE-4 but not in PTEN-proficient TE-10 cells. Genetic modification experiments demonstrated that the sensitivity to NVP-AUY922 was decreased by exogenous transduction of PTEN in TE-4 and increased by silencing PTEN expression in intact PTEN-expressing TE-10, suggesting that the expression of PTEN may be associated with cell sensitivity in HSP90 inhibition. Furthermore, the enhanced activity of AKT in PTEN-silenced TE-10 was more easily suppressed by NVP-AUY922. Collectively, NVP-AUY922 exhibits a strong antiproliferative effect, revealing its potential as a novel therapeutic alternative to current ESCC treatment. The effect may be improved further by impeding PTEN expression.
- Published
- 2012
15. Autophagy: Can it become a potential therapeutic target?
- Author
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Xiao Hong, Bao, Yoshio, Naomoto, Hui Fang, Hao, Nobuyuki, Watanabe, Kazufumi, Sakurama, Kazuhiro, Noma, Takayuki, Motoki, Yasuko, Tomono, Takuya, Fukazawa, Yasuhiro, Shirakawa, Tomoki, Yamatsuji, Junji, Matsuoka, and Munenori, Takaoka
- Subjects
Autophagy ,Animals ,Humans ,Disease ,Therapeutics - Abstract
Autophagy is a cellular lysosomal degradation pathway involved in proteins and organelles recycling for promoting cell survival, development and homeostasis. It is a multistep process and genetic studies have identified many proteins that participate in autophagosome formation and fusion with lysosomes, and various signaling factors that associate with the regulation of autophagy. In general, autophagy acts as a cell protector and its dysfunction is correlated with diverse pathologies, such as neurodegeneration, liver, heart and muscle diseases, cancer, inflammation and ageing. However, its role in cell death increases the complexity of the autophagic degradation system. A broad understanding of autophagy, ranging from detailed processes, including induction, formation and degradation, to function in physiology and pathology, revealed by accumulating studies, may be helpful for formulating therapeutic strategies for autophagy-associated human diseases.
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- 2010
16. Autophagy: Can it become a potential therapeutic target? (Review)
- Author
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Kazufumi Sakurama, Hui Fang Hao, Munenori Takaoka, Xiao Hong Bao, Tomoki Yamatsuji, Yasuhiro Shirakawa, Takayuki Motoki, Yasuko Tomono, Nobuyuki Watanabe, Kazuhiro Noma, Yoshio Naomoto, Junji Matsuoka, and Takuya Fukazawa
- Subjects
Autophagy database ,Neurodegeneration ,Autophagy ,Cell ,Inflammation ,General Medicine ,Cell cycle ,Biology ,medicine.disease ,Molecular medicine ,Cell biology ,medicine.anatomical_structure ,Apoptosis ,Genetics ,medicine ,medicine.symptom - Abstract
Autophagy is a cellular lysosomal degradation pathway involved in proteins and organelles recycling for promoting cell survival, development and homeostasis. It is a multistep process and genetic studies have identified many proteins that participate in autophagosome formation and fusion with lysosomes, and various signaling factors that associate with the regulation of autophagy. In general, autophagy acts as a cell protector and its dysfunction is correlated with diverse pathologies, such as neurodegeneration, liver, heart and muscle diseases, cancer, inflammation and ageing. However, its role in cell death increases the complexity of the autophagic degradation system. A broad understanding of autophagy, ranging from detailed processes, including induction, formation and degradation, to function in physiology and pathology, revealed by accumulating studies, may be helpful for formulating therapeutic strategies for autophagy-associated human diseases.
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- 2010
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17. Molecular cloning and characterization of Izumo1 gene from sheep and cashmere goat reveal alternative splicing
- Author
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Xiao-Hong Bao, Bao-Da Han, Wanjin Xing, Li Zhao, Shorgan Bou, and Qi Wu
- Subjects
Male ,Molecular Sequence Data ,Biology ,Molecular cloning ,Species Specificity ,Complementary DNA ,Genetics ,Capra hircus ,Cashmere goat ,Animals ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Phylogeny ,Genome ,Sheep ,Base Sequence ,Sequence Homology, Amino Acid ,Goats ,Alternative splicing ,Membrane Proteins ,Molecular Sequence Annotation ,General Medicine ,Exons ,Sequence Analysis, DNA ,Molecular biology ,Introns ,genomic DNA ,Open reading frame ,Alternative Splicing ,RNA splicing ,Sequence Alignment - Abstract
We cloned the cDNA and genomic DNA encoding for Izumo1 of cashmere goat (Capra hircus) and sheep (Ovis aries). Analysis of 4.6 kb Izumo1 genomic sequences in sheep and goat revealed a canonical open reading frame (ORF) of 963 bp spliced by eight exons. Sheep and goat Izumo1 genes share >99% identity at both DNA and protein levels and are also highly homologous to the orthologues in cattle, mouse, rat and human. Extensive cloning and analysis of Izumo1 cDNA revealed three (del 69, del 182 and del 217) and two (del 69 and ins 30) alternative splicing isoforms in goat and sheep, respectively. All of the isoforms are derived from splicing at typical GT-AG sites leading to partial or complete truncation of the immunoglobulin (Ig)-like domain. Bioinformatics analysis showed that caprine and ovine Izumo1 proteins share similar structure with their murine orthologue. There are a signal peptide at the N-terminus (1–22 aa), a transmembrane domain at the C-terminus (302–319 aa), and an extracellular Ig-like region in the middle (161–252 aa) with a putative N-linked glycosylation site (N205-N-S). Alignment of Izumo1 protein sequences among 15 mammalian species displayed several highly conserved regions, including LDC and YRC motifs with cysteine residues for potential disulfide bridge formation, CPNKCG motif upstream of the Ig-like domain, GLTDYSFYRVW motif upstream of the putative N-linked glycosylation site, and a number of scattered cysteine residues. These distinctive features are very informative to pinpoint the important gene motifs and functions. The C-terminal regions, however, are more variable across species. Izumo1 cDNA sequences of goat, sheep, and cow were found to be largely homologous, and the molecular phylogenetic analysis is consistent with their morphological taxonomy. This implies the Izumo1 gene evolves from the same ancestor, and the mechanism of sperm–egg fusion in mammals may be under the same principle in which Izumo1 plays an important role.
- Published
- 2010
18. Progress in researches about focal adhesion kinase in gastrointestinal tract
- Author
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Yoshio Naomoto, Tomoki Yamatsuji, Yasuhiro Shirakawa, Munenori Takaoka, Hui Fang Hao, Kazuhiro Noma, Yasuko Tomono, Nobuyuki Watanabe, Kazufumi Sakurama, Junji Matsuoka, Takuya Fukazawa, and Xiao Hong Bao
- Subjects
Cell Survival ,Integrin ,PTK2 ,Apoptosis ,Review ,Biology ,medicine.disease_cause ,Focal adhesion ,medicine ,Animals ,Humans ,Kinase activity ,Enzyme Inhibitors ,Gastrointestinal Neoplasms ,Gastroenterology ,General Medicine ,Gastrointestinal Tract ,Focal Adhesion Protein-Tyrosine Kinases ,Cancer cell ,biology.protein ,Cancer research ,Phosphorylation ,Signal transduction ,biological phenomena, cell phenomena, and immunity ,Carcinogenesis ,Signal Transduction - Abstract
Focal adhesion kinase (FAK) is a 125-kDa non-receptor protein tyrosine. Growth factors or the clustering of integrins facilitate the rapid phosphorylation of FAK at Tyr-397 and this in turn recruits Src-family protein tyrosine kinases, resulting in the phosphorylation of Tyr-576 and Tyr-577 in the FAK activation loop and full catalytic FAK activation. FAK plays a critical role in the biological processes of normal and cancer cells including the gastrointestinal tract. FAK also plays an important role in the restitution, cell survival and apoptosis and carcinogenesis of the gastrointestinal tract. FAK is over-expressed in cancer cells and its over-expression and elevated activities are associated with motility and invasion of cancer cells. FAK has been proposed as a potential target in cancer therapy. Small molecule inhibitors effectively inhibit the kinase activity of FAK and show a potent inhibitory effect for the proliferation and migration of tumor cells, indicating a high potential for application in cancer therapy.
- Published
- 2009
19. Molecular cloning and characterization of Izumo1 gene from sheep and cashmere goat reveal alternative splicing.
- Author
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Wan-Jin Xing, Bao-Da Han, Qi Wu, Li Zhao, Xiao-Hong Bao, and Shorgan Bou
- Abstract
We cloned the cDNA and genomic DNA encoding for Izumo1 of cashmere goat ( Capra hircus) and sheep ( Ovis aries). Analysis of 4.6 kb Izumo1 genomic sequences in sheep and goat revealed a canonical open reading frame (ORF) of 963 bp spliced by eight exons. Sheep and goat Izumo1 genes share >99% identity at both DNA and protein levels and are also highly homologous to the orthologues in cattle, mouse, rat and human. Extensive cloning and analysis of Izumo1 cDNA revealed three (del 69, del 182 and del 217) and two (del 69 and ins 30) alternative splicing isoforms in goat and sheep, respectively. All of the isoforms are derived from splicing at typical GT-AG sites leading to partial or complete truncation of the immunoglobulin (Ig)-like domain. Bioinformatics analysis showed that caprine and ovine Izumo1 proteins share similar structure with their murine orthologue. There are a signal peptide at the N-terminus (1-22 aa), a transmembrane domain at the C-terminus (302-319 aa), and an extracellular Ig-like region in the middle (161-252 aa) with a putative N-linked glycosylation site (N-N-S). Alignment of Izumo1 protein sequences among 15 mammalian species displayed several highly conserved regions, including LDC and YRC motifs with cysteine residues for potential disulfide bridge formation, CPNKCG motif upstream of the Ig-like domain, GLTDYSFYRVW motif upstream of the putative N-linked glycosylation site, and a number of scattered cysteine residues. These distinctive features are very informative to pinpoint the important gene motifs and functions. The C-terminal regions, however, are more variable across species. Izumo1 cDNA sequences of goat, sheep, and cow were found to be largely homologous, and the molecular phylogenetic analysis is consistent with their morphological taxonomy. This implies the Izumo1 gene evolves from the same ancestor, and the mechanism of sperm-egg fusion in mammals may be under the same principle in which Izumo1 plays an important role. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
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